Query 034201
Match_columns 101
No_of_seqs 135 out of 542
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 18:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_6 Ribosomal protein L36; 100.0 8.5E-54 2.9E-58 303.3 2.2 100 1-101 1-104 (104)
2 3r8s_4 50S ribosomal protein L 99.9 1.4E-26 4.7E-31 139.6 3.1 38 1-38 1-38 (38)
3 2zjr_4 50S ribosomal protein L 99.9 1.8E-25 6.1E-30 133.9 1.4 37 1-38 1-37 (37)
4 2ju4_A GMP-PDE gamma, retinal 26.8 18 0.0006 24.7 0.6 9 30-38 27-35 (87)
5 1cz6_A Protein (androctonin); 19.3 27 0.00092 19.1 0.2 22 10-31 3-24 (26)
6 2vy4_A U11/U12 small nuclear r 15.2 53 0.0018 18.3 0.8 13 24-36 5-17 (37)
7 1j0t_A MIH, MOLT-inhibiting ho 13.1 1 3.5E-05 29.8 -7.8 24 7-30 21-44 (78)
8 3ga3_A Interferon-induced heli 13.1 61 0.0021 23.0 0.9 30 5-36 9-46 (133)
9 4g9j_C Synthetic peptide, seri 12.0 43 0.0015 18.2 -0.2 19 29-47 3-21 (26)
10 4a18_O RPL28, ribosomal protei 12.0 2.1E+02 0.0071 20.0 3.3 32 12-43 12-43 (134)
No 1
>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=8.5e-54 Score=303.28 Aligned_cols=100 Identities=60% Similarity=0.950 Sum_probs=37.8
Q ss_pred CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC-cccccccC--CCCC-cccccccccccccccccccccccccc
Q 034201 1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG-MSTFANEG--LIPF-TSVETNVKQEIAPNHNIRAGLASLIP 76 (101)
Q Consensus 1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG-~~t~a~~~--~~~p-~~~e~~~~~~i~~~~~~~~g~as~~~ 76 (101)
||||+|||++|++|++|||+||||||||+||||||||| |+|+|+++ |+|| .|.|++++++|.|+|++++||||++|
T Consensus 1 MKVRaSlKk~C~~CkvVRRkGRvyVICK~NPRHKQRQG~~~T~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gla~~~~ 80 (104)
T 3bbo_6 1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEGITPSPLFAEPIASQELVRLPGQGVSAGLASLLH 80 (104)
T ss_dssp CBCCSCCCCCSTTBCCEEETTEEEBCBSSCGGGCBCCC------------------------------------------
T ss_pred CccchhhHHhhccCeEEEECCEEEEEcCCCcchhhhccceeeeeccCCCCCCccccccccccccccccccccccceeccc
Confidence 99999999999999999999999999999999999999 99999999 7777 55566669999999999999999999
Q ss_pred CCCCcchhhcchhhhhhhhhhhcCC
Q 034201 77 KKHESWSIIYGWRASLASLLFKQGN 101 (101)
Q Consensus 77 ~~~~~~s~~~~wr~glas~l~k~~n 101 (101)
+||| |||+||||+|||||||+|||
T Consensus 81 ~~~~-~s~~~~wr~glas~l~~~~~ 104 (104)
T 3bbo_6 81 KRPM-PTAYFGWRSGLASILFKQGN 104 (104)
T ss_dssp -------------------------
T ss_pred cCcC-cchhhCchhhHHHHhhccCC
Confidence 9999 99999999999999999998
No 2
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=99.92 E-value=1.4e-26 Score=139.57 Aligned_cols=38 Identities=71% Similarity=1.111 Sum_probs=37.7
Q ss_pred CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201 1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38 (101)
Q Consensus 1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG 38 (101)
|||++|||++|++|++|||+|+|||||++|||||||||
T Consensus 1 MKVr~Svk~~c~~C~vvrR~grv~Vick~nPrhKqRQG 38 (38)
T 3r8s_4 1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 (38)
T ss_dssp CEECSCCCCCSTTEEEEEETTEEEEEETTCGGGCEECC
T ss_pred CccchhhhhhccCCeEEEECCEEEEEeCCCCchhhcCC
Confidence 99999999999999999999999999999999999998
No 3
>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...
Probab=99.90 E-value=1.8e-25 Score=133.89 Aligned_cols=37 Identities=78% Similarity=1.301 Sum_probs=36.6
Q ss_pred CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201 1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38 (101)
Q Consensus 1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG 38 (101)
|||++|||++|++|++|||+|||||||+ |||||||||
T Consensus 1 MKVr~slk~~c~~C~vvrR~grv~Vick-nPrhKqrQg 37 (37)
T 2zjr_4 1 MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37 (37)
T ss_dssp CEECSSCCCCSTTCCCEECSSCEEECCS-SSTTCEECC
T ss_pred CccchhHHHhhcCCEEEEECCEEEEECC-CCcccccCC
Confidence 9999999999999999999999999999 999999998
No 4
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=26.83 E-value=18 Score=24.68 Aligned_cols=9 Identities=56% Similarity=0.405 Sum_probs=7.7
Q ss_pred CCCcccccC
Q 034201 30 NLKHKQRQG 38 (101)
Q Consensus 30 NPRHKQRQG 38 (101)
-||+||||-
T Consensus 27 PPKFKQR~T 35 (87)
T 2ju4_A 27 PPKCKQRQT 35 (87)
T ss_dssp SCCCSSCSS
T ss_pred CCccchhhc
Confidence 499999994
No 5
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=19.34 E-value=27 Score=19.05 Aligned_cols=22 Identities=36% Similarity=0.741 Sum_probs=16.1
Q ss_pred cCCCceEEEeCCEEEEEcCCCC
Q 034201 10 MCEFCKIIKRRGRVYVICSANL 31 (101)
Q Consensus 10 ~C~~C~vVRRkGRlyViCk~NP 31 (101)
.|+.=++-||+|--|--|...|
T Consensus 3 vcrqikicrrrggcyykctnrp 24 (26)
T 1cz6_A 3 VCRQIKICRRRGGCYYKCTNRP 24 (26)
T ss_dssp CCCEEEECCSSSCCEEEECCCC
T ss_pred HhhhhHHHHhcCceEEEccCCC
Confidence 4666667788898898897544
No 6
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=15.16 E-value=53 Score=18.30 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=10.7
Q ss_pred EEEcCCCCCcccc
Q 034201 24 YVICSANLKHKQR 36 (101)
Q Consensus 24 yViCk~NPRHKQR 36 (101)
+|+|.-||.|.-.
T Consensus 5 ~v~CPyd~~H~i~ 17 (37)
T 2vy4_A 5 VVICPYDSNHHMP 17 (37)
T ss_dssp CEECTTTSSCEEC
T ss_pred EEECCCCCCeEeC
Confidence 6899999999754
No 7
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=13.14 E-value=1 Score=29.81 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.2
Q ss_pred hhhcCCCceEEEeCCEEEEEcCCC
Q 034201 7 VKKMCEFCKIIKRRGRVYVICSAN 30 (101)
Q Consensus 7 lKk~C~~C~vVRRkGRlyViCk~N 30 (101)
|-++|+|||=+=|.-.|+..|++|
T Consensus 21 ldrVCdDCyNLyR~p~v~~~CR~n 44 (78)
T 1j0t_A 21 VVRVCEDCTNIFRLPGLDGMCRNR 44 (78)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTSS
T ss_pred HHHHHHHHHHHhcCccHHHHHHHh
Confidence 456799999888888888888765
No 8
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=13.12 E-value=61 Score=23.00 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=20.5
Q ss_pred chhhhcCCCceEE--------EeCCEEEEEcCCCCCcccc
Q 034201 5 SSVKKMCEFCKII--------KRRGRVYVICSANLKHKQR 36 (101)
Q Consensus 5 sSlKk~C~~C~vV--------RRkGRlyViCk~NPRHKQR 36 (101)
+.++..|++|... .+.+-=||.+ ||-++.+
T Consensus 9 s~vkllCrkC~~~~C~g~DIR~ie~~HhVnv--~p~F~~~ 46 (133)
T 3ga3_A 9 SLITFLCKNCSVLACSGEDIHVIEKMHHVNM--TPEFKEL 46 (133)
T ss_dssp GGEEEEETTTCCEEEEGGGCEEETTTEEECC--CTGGGGS
T ss_pred ceEEEEccCCCeeEEeccceEEeccceEEee--Chhheee
Confidence 4578889999854 3456666665 5887665
No 9
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=12.01 E-value=43 Score=18.23 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=14.9
Q ss_pred CCCCcccccCcccccccCC
Q 034201 29 ANLKHKQRQGMSTFANEGL 47 (101)
Q Consensus 29 ~NPRHKQRQG~~t~a~~~~ 47 (101)
+.|+.|.+....|+|.++.
T Consensus 3 krpkrkrknarvtfaeaae 21 (26)
T 4g9j_C 3 KRPKRKRKNARVTFAEAAE 21 (26)
T ss_pred cccccccccceeeHHHhhh
Confidence 4688888888899987664
No 10
>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O 4a1d_O
Probab=11.96 E-value=2.1e+02 Score=20.03 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=21.8
Q ss_pred CCceEEEeCCEEEEEcCCCCCcccccCccccc
Q 034201 12 EFCKIIKRRGRVYVICSANLKHKQRQGMSTFA 43 (101)
Q Consensus 12 ~~C~vVRRkGRlyViCk~NPRHKQRQG~~t~a 43 (101)
.+|++|+|+|..|=.-+-|.+-+.-..|+-++
T Consensus 12 nnsFLvKr~g~~FS~eP~NL~n~~S~kysGLa 43 (134)
T 4a18_O 12 NNAFLVKNNGVAFTTDPFSVTGRNTQVGLGFT 43 (134)
T ss_dssp TCTTEEEETTEEEECCTTCSSSBCSTTTCTTT
T ss_pred cceEEEeeCCccccCCCCCccceecccccccc
Confidence 58999999997776666666655444444444
Done!