BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034203
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60182|GLNA_METJA Glutamine synthetase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=glnA PE=3 SV=1
Length = 454
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 31 PEFFLFKKDGRRPFQLVY--HGQFDDSRPSNNLPVTGRDIRLAIE 73
PEFFL K+D P + V G + D P ++ P RDI LA+E
Sbjct: 143 PEFFLLKRDPHNPHRWVPADDGGYFDVEPLDDAPDIRRDIVLALE 187
>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii
GN=LRRC40 PE=2 SV=1
Length = 602
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 36 FKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ---PVSSNQKPSVGCS 92
FK+ GR V G +R S L ++GR++ +CV P +NQ S G +
Sbjct: 16 FKEGGRDCGTSVPQGLLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGAT 75
Query: 93 IKWHPQT 99
+W QT
Sbjct: 76 ERWWEQT 82
>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens
GN=LRRC40 PE=1 SV=1
Length = 602
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 36 FKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ---PVSSNQKPSVGCS 92
FK GR V G +R S L ++GR++ +CV P +NQ S G +
Sbjct: 16 FKAGGRDCGTSVPQGLLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGAT 75
Query: 93 IKWHPQT 99
+W QT
Sbjct: 76 ERWWEQT 82
>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis
GN=LRRC40 PE=2 SV=1
Length = 602
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 36 FKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ---PVSSNQKPSVGCS 92
FK GR V G +R S L ++GR++ +CV P +NQ S G +
Sbjct: 16 FKAAGRDCGTSVPQGLLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGAT 75
Query: 93 IKWHPQT 99
+W QT
Sbjct: 76 ERWWEQT 82
>sp|B3NC86|UBP36_DROER Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila erecta
GN=Usp36 PE=3 SV=1
Length = 1085
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 52 FDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVG 90
F S+PS + P T R + +L+G PV S+Q+P VG
Sbjct: 834 FSSSKPSTDSPATPGAKR---QKLLNGSPVKSHQQPRVG 869
>sp|P12425|GLNA_BACSU Glutamine synthetase OS=Bacillus subtilis (strain 168) GN=glnA PE=1
SV=3
Length = 444
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 126 DFNLGPEPEFFLFKLDEKGEPTLELNDKGGYFDLAPTDLGENCRRDIVLELE 177
>sp|P99095|GLNA_STAAN Glutamine synthetase OS=Staphylococcus aureus (strain N315) GN=glnA
PE=1 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|P60890|GLNA_STAAM Glutamine synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=glnA PE=1 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|P0A039|GLNA_STAAW Glutamine synthetase OS=Staphylococcus aureus (strain MW2) GN=glnA
PE=3 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|P0A040|GLNA_STAAU Glutamine synthetase OS=Staphylococcus aureus GN=glnA PE=3 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q6G9Q4|GLNA_STAAS Glutamine synthetase OS=Staphylococcus aureus (strain MSSA476)
GN=glnA PE=3 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q5HGC3|GLNA_STAAC Glutamine synthetase OS=Staphylococcus aureus (strain COL) GN=glnA
PE=3 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q6GHC6|GLNA_STAAR Glutamine synthetase OS=Staphylococcus aureus (strain MRSA252)
GN=glnA PE=3 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q8CSR8|GLNA_STAES Glutamine synthetase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=glnA PE=3 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q5HPN2|GLNA_STAEQ Glutamine synthetase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=glnA PE=3 SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|P19064|GLNA_BACCE Glutamine synthetase OS=Bacillus cereus GN=glnA PE=1 SV=3
Length = 444
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L +G + D P + RDI L +E
Sbjct: 126 DFNLGPEPEFFLFKVDEKGNPTLELNDNGGYFDLAPMDLGENCRRDIVLELE 177
>sp|Q21CE8|MUTS_RHOPB DNA mismatch repair protein MutS OS=Rhodopseudomonas palustris
(strain BisB18) GN=mutS PE=3 SV=2
Length = 905
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP---SNNLPVTGRDIRLAIEC 74
S+D+A++F A + L K+DG + YH D++R + L V R A +C
Sbjct: 427 SRDLAQEFSRALADDLPLMKRDGGF-VREGYHDALDETRKLRDDSRLIVAAMQARYADDC 485
Query: 75 VLSGQPVSSN 84
+ G + N
Sbjct: 486 GVKGLKIRHN 495
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,766,160
Number of Sequences: 539616
Number of extensions: 1503858
Number of successful extensions: 3006
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3002
Number of HSP's gapped (non-prelim): 17
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)