Query 034203
Match_columns 101
No_of_seqs 113 out of 649
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02969 PRX_like1 Peroxiredoxi 99.7 3.2E-17 7E-22 115.4 9.1 85 7-95 87-171 (171)
2 PTZ00253 tryparedoxin peroxida 99.3 1.5E-12 3.3E-17 94.6 5.6 77 8-99 99-181 (199)
3 cd03016 PRX_1cys Peroxiredoxin 98.8 2.5E-08 5.3E-13 72.9 7.6 78 7-99 86-171 (203)
4 cd03015 PRX_Typ2cys Peroxiredo 98.8 3.1E-08 6.7E-13 70.1 7.4 77 7-98 91-173 (173)
5 PRK15412 thiol:disulfide inter 98.7 4.7E-08 1E-12 70.2 6.4 59 8-79 120-179 (185)
6 PRK13190 putative peroxiredoxi 98.7 7.2E-08 1.6E-12 70.5 7.2 77 8-99 89-171 (202)
7 PRK15000 peroxidase; Provision 98.7 6.9E-08 1.5E-12 70.8 7.0 77 8-99 97-179 (200)
8 TIGR00385 dsbE periplasmic pro 98.6 1E-07 2.3E-12 67.6 6.3 57 8-77 115-172 (173)
9 cd03012 TlpA_like_DipZ_like Tl 98.6 5.9E-08 1.3E-12 65.1 4.8 42 7-50 83-124 (126)
10 TIGR01626 ytfJ_HI0045 conserve 98.6 8.3E-08 1.8E-12 70.3 5.7 59 8-76 121-183 (184)
11 PRK13189 peroxiredoxin; Provis 98.6 2E-07 4.3E-12 69.4 7.4 77 8-99 97-180 (222)
12 PRK10382 alkyl hydroperoxide r 98.5 3.4E-07 7.4E-12 66.7 7.3 79 7-99 90-174 (187)
13 PF08534 Redoxin: Redoxin; In 98.5 3.4E-07 7.4E-12 62.2 6.4 42 7-52 83-133 (146)
14 TIGR03137 AhpC peroxiredoxin. 98.5 6.1E-07 1.3E-11 64.7 7.1 79 7-99 90-174 (187)
15 PRK13599 putative peroxiredoxi 98.5 7.6E-07 1.6E-11 66.1 7.6 75 8-97 90-171 (215)
16 PRK13191 putative peroxiredoxi 98.5 7.1E-07 1.5E-11 66.2 7.4 75 8-97 95-176 (215)
17 cd03010 TlpA_like_DsbE TlpA-li 98.5 3.1E-07 6.7E-12 61.2 4.7 45 8-54 78-123 (127)
18 cd03017 PRX_BCP Peroxiredoxin 98.4 5.1E-07 1.1E-11 60.6 4.8 45 7-53 78-131 (140)
19 PRK03147 thiol-disulfide oxido 98.4 1.8E-06 3.9E-11 59.9 6.9 56 7-75 116-171 (173)
20 PTZ00137 2-Cys peroxiredoxin; 98.4 2.1E-06 4.6E-11 65.8 7.8 78 7-99 160-242 (261)
21 PLN02412 probable glutathione 98.3 8.2E-07 1.8E-11 63.0 4.9 58 8-78 93-166 (167)
22 PRK13728 conjugal transfer pro 98.3 2.1E-06 4.6E-11 62.8 7.0 58 8-78 112-173 (181)
23 PRK09437 bcp thioredoxin-depen 98.3 2.2E-06 4.7E-11 59.0 6.2 42 8-51 86-139 (154)
24 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 1.3E-06 2.9E-11 57.2 4.8 38 8-49 81-124 (124)
25 PLN02399 phospholipid hydroper 98.2 2.1E-06 4.6E-11 64.9 5.4 58 7-77 162-235 (236)
26 cd02970 PRX_like2 Peroxiredoxi 98.2 2.1E-06 4.7E-11 57.7 4.5 35 7-41 78-141 (149)
27 cd03011 TlpA_like_ScsD_MtbDsbE 98.2 3.6E-06 7.9E-11 55.4 4.8 43 8-53 72-114 (123)
28 cd02966 TlpA_like_family TlpA- 98.1 4.7E-06 1E-10 52.3 4.3 41 8-50 76-116 (116)
29 TIGR02661 MauD methylamine deh 98.1 1.1E-05 2.5E-10 58.1 6.6 57 8-79 126-182 (189)
30 COG1225 Bcp Peroxiredoxin [Pos 98.1 1.2E-05 2.6E-10 57.8 6.5 40 7-48 85-136 (157)
31 cd02967 mauD Methylamine utili 98.1 5.6E-06 1.2E-10 53.8 4.4 38 8-51 75-113 (114)
32 cd03018 PRX_AhpE_like Peroxire 98.1 1.2E-05 2.6E-10 54.5 5.8 43 8-54 84-134 (149)
33 cd02971 PRX_family Peroxiredox 98.0 1.1E-05 2.4E-10 53.9 5.0 42 8-51 79-129 (140)
34 PRK00522 tpx lipid hydroperoxi 98.0 2.2E-05 4.8E-10 55.5 5.9 43 8-54 98-151 (167)
35 TIGR02540 gpx7 putative glutat 98.0 1E-05 2.3E-10 55.9 4.0 57 7-76 85-153 (153)
36 PTZ00256 glutathione peroxidas 97.9 1.7E-05 3.7E-10 56.9 4.9 58 7-77 104-182 (183)
37 TIGR02738 TrbB type-F conjugat 97.9 3.8E-05 8.1E-10 54.5 5.8 54 10-76 95-153 (153)
38 cd00340 GSH_Peroxidase Glutath 97.9 1.3E-05 2.8E-10 55.5 3.1 45 7-53 84-144 (152)
39 PLN02919 haloacid dehalogenase 97.8 6.2E-05 1.3E-09 66.9 6.8 58 7-77 480-537 (1057)
40 cd02950 TxlA TRX-like protein 97.8 0.00017 3.6E-09 50.1 7.7 52 19-83 66-117 (142)
41 PRK14018 trifunctional thiored 97.8 5.9E-05 1.3E-09 62.9 6.2 42 10-53 120-161 (521)
42 cd03014 PRX_Atyp2cys Peroxired 97.7 0.00012 2.7E-09 49.5 5.6 41 9-51 82-129 (143)
43 COG0450 AhpC Peroxiredoxin [Po 97.6 0.00028 6.2E-09 52.3 6.7 61 8-77 96-162 (194)
44 cd02968 SCO SCO (an acronym fo 97.6 0.0001 2.3E-09 49.4 4.1 41 8-50 85-142 (142)
45 PTZ00056 glutathione peroxidas 97.5 0.00016 3.5E-09 52.9 4.5 60 7-79 101-181 (199)
46 cd02951 SoxW SoxW family; SoxW 97.4 0.00054 1.2E-08 45.6 5.3 48 18-78 73-121 (125)
47 PF13098 Thioredoxin_2: Thiore 97.2 0.0007 1.5E-08 43.7 4.7 33 19-53 72-104 (112)
48 cd03008 TryX_like_RdCVF Trypar 97.2 0.00039 8.5E-09 49.1 3.4 36 12-51 95-130 (146)
49 cd03009 TryX_like_TryX_NRX Try 97.2 0.0002 4.3E-09 47.8 1.7 26 16-41 86-111 (131)
50 cd02975 PfPDO_like_N Pyrococcu 96.6 0.014 2.9E-07 38.8 7.0 58 8-77 53-111 (113)
51 cd02953 DsbDgamma DsbD gamma f 96.5 0.003 6.4E-08 40.6 3.1 34 18-53 61-95 (104)
52 PF13905 Thioredoxin_8: Thiore 96.4 0.0011 2.4E-08 41.6 0.7 31 11-41 64-94 (95)
53 cd03013 PRX5_like Peroxiredoxi 96.4 0.0063 1.4E-07 42.6 4.6 39 9-52 90-139 (155)
54 PRK09381 trxA thioredoxin; Pro 96.4 0.015 3.2E-07 37.5 5.9 52 11-76 57-108 (109)
55 cd02956 ybbN ybbN protein fami 96.4 0.008 1.7E-07 37.7 4.5 37 13-52 50-86 (96)
56 TIGR02740 TraF-like TraF-like 96.3 0.011 2.4E-07 45.3 5.9 54 11-77 212-265 (271)
57 cd03065 PDI_b_Calsequestrin_N 96.3 0.014 3E-07 39.9 5.7 49 13-76 71-119 (120)
58 TIGR01126 pdi_dom protein disu 96.3 0.01 2.3E-07 37.0 4.7 46 15-74 55-100 (102)
59 cd02964 TryX_like_family Trypa 96.1 0.0068 1.5E-07 40.7 3.4 30 18-51 88-117 (132)
60 cd02963 TRX_DnaJ TRX domain, D 96.0 0.017 3.8E-07 37.9 4.7 48 13-74 63-110 (111)
61 TIGR00411 redox_disulf_1 small 96.0 0.024 5.2E-07 34.3 5.1 46 13-76 37-82 (82)
62 TIGR01068 thioredoxin thioredo 95.9 0.028 6.2E-07 34.7 5.1 47 15-75 54-100 (101)
63 PRK10996 thioredoxin 2; Provis 95.8 0.028 6.1E-07 38.6 5.3 48 14-75 91-138 (139)
64 cd02985 TRX_CDSP32 TRX family, 95.3 0.06 1.3E-06 34.8 5.2 30 19-51 61-90 (103)
65 cd03005 PDI_a_ERp46 PDIa famil 95.3 0.03 6.6E-07 35.1 3.7 36 15-53 59-94 (102)
66 cd02994 PDI_a_TMX PDIa family, 95.2 0.068 1.5E-06 33.8 5.2 34 15-52 57-90 (101)
67 PRK11509 hydrogenase-1 operon 95.2 0.095 2.1E-06 36.6 6.2 55 12-80 74-128 (132)
68 cd02949 TRX_NTR TRX domain, no 95.2 0.048 1E-06 34.6 4.5 34 15-51 53-86 (97)
69 COG2143 Thioredoxin-related pr 95.1 0.031 6.6E-07 40.9 3.6 33 19-53 105-137 (182)
70 cd02973 TRX_GRX_like Thioredox 95.0 0.064 1.4E-06 31.6 4.4 39 6-51 28-67 (67)
71 cd02958 UAS UAS family; UAS is 95.0 0.12 2.6E-06 33.9 6.1 35 17-53 64-99 (114)
72 cd02948 TRX_NDPK TRX domain, T 94.9 0.069 1.5E-06 34.4 4.6 43 18-75 60-102 (102)
73 PRK10606 btuE putative glutath 94.8 0.077 1.7E-06 38.6 5.1 34 33-77 149-182 (183)
74 PF00085 Thioredoxin: Thioredo 94.7 0.11 2.3E-06 32.3 5.1 45 16-74 58-102 (103)
75 cd02999 PDI_a_ERp44_like PDIa 94.6 0.11 2.3E-06 33.7 5.0 44 5-53 46-92 (100)
76 PF09695 YtfJ_HI0045: Bacteria 94.5 0.1 2.2E-06 37.8 5.1 56 7-75 100-157 (160)
77 cd02961 PDI_a_family Protein D 94.4 0.059 1.3E-06 32.8 3.3 36 15-52 57-92 (101)
78 PLN00410 U5 snRNP protein, DIM 94.2 0.18 3.9E-06 35.6 5.8 64 11-78 59-122 (142)
79 cd03002 PDI_a_MPD1_like PDI fa 94.1 0.059 1.3E-06 34.3 3.0 35 18-52 63-99 (109)
80 PTZ00051 thioredoxin; Provisio 93.8 0.091 2E-06 32.9 3.4 34 15-51 57-90 (98)
81 TIGR02187 GlrX_arch Glutaredox 93.8 0.24 5.1E-06 36.2 6.0 47 17-76 65-111 (215)
82 cd03004 PDI_a_ERdj5_C PDIa fam 93.6 0.11 2.3E-06 33.0 3.5 38 13-52 57-94 (104)
83 KOG0910 Thioredoxin-like prote 93.6 0.17 3.7E-06 36.2 4.8 53 11-77 97-149 (150)
84 cd03003 PDI_a_ERdj5_N PDIa fam 93.6 0.072 1.6E-06 33.8 2.6 36 13-51 56-91 (101)
85 cd03000 PDI_a_TMX3 PDIa family 93.5 0.24 5.1E-06 31.7 5.0 32 16-51 59-90 (104)
86 cd02997 PDI_a_PDIR PDIa family 93.1 0.16 3.5E-06 31.8 3.6 33 18-53 64-96 (104)
87 cd02998 PDI_a_ERp38 PDIa famil 93.1 0.11 2.3E-06 32.5 2.8 33 18-52 64-96 (105)
88 cd03001 PDI_a_P5 PDIa family, 93.0 0.15 3.2E-06 31.9 3.4 36 15-52 58-93 (103)
89 PRK00293 dipZ thiol:disulfide 93.0 0.16 3.5E-06 42.7 4.5 45 18-75 523-569 (571)
90 cd02962 TMX2 TMX2 family; comp 92.8 0.3 6.6E-06 34.5 5.1 55 13-71 86-147 (152)
91 KOG0854 Alkyl hydroperoxide re 92.8 0.6 1.3E-05 34.9 6.8 62 9-79 98-171 (224)
92 COG3054 Predicted transcriptio 92.5 0.37 8.1E-06 35.1 5.2 39 13-54 129-169 (184)
93 cd02947 TRX_family TRX family; 92.4 0.52 1.1E-05 27.8 5.1 41 8-51 41-82 (93)
94 KOG0907 Thioredoxin [Posttrans 92.3 0.61 1.3E-05 31.1 5.8 47 13-74 58-104 (106)
95 cd02984 TRX_PICOT TRX domain, 92.1 0.26 5.7E-06 30.6 3.7 33 16-51 55-87 (97)
96 PF00837 T4_deiodinase: Iodoth 91.4 0.96 2.1E-05 34.6 6.7 54 9-74 181-235 (237)
97 cd02965 HyaE HyaE family; HyaE 91.3 0.5 1.1E-05 32.0 4.5 39 12-53 66-104 (111)
98 KOG0855 Alkyl hydroperoxide re 90.9 0.94 2E-05 33.6 5.9 44 7-52 145-195 (211)
99 cd03026 AhpF_NTD_C TRX-GRX-lik 90.9 0.33 7.3E-06 31.1 3.3 42 4-52 39-81 (89)
100 cd02989 Phd_like_TxnDC9 Phosdu 90.7 2 4.4E-05 28.3 7.1 45 6-53 51-96 (113)
101 PF13192 Thioredoxin_3: Thiore 90.6 0.88 1.9E-05 27.9 4.9 39 18-73 38-76 (76)
102 cd02957 Phd_like Phosducin (Ph 90.6 1.2 2.6E-05 29.0 5.8 59 6-72 53-112 (113)
103 PTZ00443 Thioredoxin domain-co 90.4 1.2 2.5E-05 33.5 6.2 49 15-77 92-140 (224)
104 PRK11657 dsbG disulfide isomer 90.3 0.52 1.1E-05 35.7 4.3 34 16-52 206-239 (251)
105 PF13728 TraF: F plasmid trans 90.3 0.69 1.5E-05 34.3 4.9 42 11-53 154-206 (215)
106 COG0386 BtuE Glutathione perox 89.9 0.63 1.4E-05 33.7 4.2 34 32-78 129-162 (162)
107 cd02996 PDI_a_ERp44 PDIa famil 89.8 0.47 1E-05 30.4 3.3 41 9-51 57-98 (108)
108 cd02954 DIM1 Dim1 family; Dim1 89.7 1.5 3.4E-05 29.7 5.9 61 11-75 50-110 (114)
109 PTZ00102 disulphide isomerase; 89.4 0.85 1.8E-05 36.3 5.1 50 16-78 418-467 (477)
110 KOG0852 Alkyl hydroperoxide re 89.4 0.43 9.3E-06 35.4 3.1 34 8-41 96-135 (196)
111 cd02992 PDI_a_QSOX PDIa family 88.7 1.5 3.2E-05 28.9 5.2 25 16-40 65-89 (114)
112 TIGR00412 redox_disulf_2 small 88.5 3.7 8E-05 25.1 6.6 36 10-52 30-65 (76)
113 cd02955 SSP411 TRX domain, SSP 88.4 4.7 0.0001 27.4 7.6 31 11-41 52-92 (124)
114 cd02959 ERp19 Endoplasmic reti 88.4 0.77 1.7E-05 30.6 3.6 30 12-41 56-88 (117)
115 cd03006 PDI_a_EFP1_N PDIa fami 87.6 0.8 1.7E-05 30.6 3.3 35 16-53 70-105 (113)
116 cd02995 PDI_a_PDI_a'_C PDIa fa 85.5 2.2 4.7E-05 26.4 4.4 34 18-52 62-95 (104)
117 smart00594 UAS UAS domain. 85.3 1 2.3E-05 30.0 3.0 25 16-40 73-97 (122)
118 cd02993 PDI_a_APS_reductase PD 85.3 1.1 2.4E-05 29.0 3.0 31 19-51 67-98 (109)
119 TIGR02739 TraF type-F conjugat 85.0 4.5 9.7E-05 31.1 6.6 48 19-78 203-250 (256)
120 PTZ00102 disulphide isomerase; 83.8 3.6 7.9E-05 32.7 5.9 48 15-77 92-139 (477)
121 cd02991 UAS_ETEA UAS family, E 82.4 1.8 3.9E-05 29.1 3.2 36 18-53 65-101 (116)
122 TIGR01130 ER_PDI_fam protein d 81.9 3.9 8.4E-05 32.0 5.3 36 15-53 61-97 (462)
123 PRK13703 conjugal pilus assemb 81.5 8.6 0.00019 29.5 6.9 49 20-80 197-245 (248)
124 PF13743 Thioredoxin_5: Thiore 81.0 0.85 1.8E-05 32.6 1.2 25 16-40 134-158 (176)
125 cd03023 DsbA_Com1_like DsbA fa 80.6 3.3 7.2E-05 27.2 4.0 27 18-52 118-144 (154)
126 PF13462 Thioredoxin_4: Thiore 79.8 4.8 0.0001 26.9 4.6 38 18-74 125-162 (162)
127 COG1651 DsbG Protein-disulfide 79.6 3.6 7.7E-05 30.1 4.2 42 16-76 202-243 (244)
128 cd02983 P5_C P5 family, C-term 79.5 6.8 0.00015 26.7 5.3 47 20-80 70-119 (130)
129 cd02960 AGR Anterior Gradient 79.4 3.9 8.5E-05 28.4 4.1 28 28-57 78-105 (130)
130 COG2761 FrnE Predicted dithiol 79.1 7.9 0.00017 29.4 5.9 49 18-84 173-221 (225)
131 COG3118 Thioredoxin domain-con 78.8 4.9 0.00011 31.9 4.9 27 14-41 82-108 (304)
132 TIGR03143 AhpF_homolog putativ 78.3 5.7 0.00012 33.0 5.5 36 16-52 406-441 (555)
133 TIGR02187 GlrX_arch Glutaredox 76.8 6.8 0.00015 28.4 4.9 31 15-51 172-202 (215)
134 PF13778 DUF4174: Domain of un 76.5 7.2 0.00016 26.2 4.7 43 20-75 68-111 (118)
135 COG1999 Uncharacterized protei 76.3 5.8 0.00013 29.2 4.5 52 15-79 141-207 (207)
136 PF01323 DSBA: DSBA-like thior 75.6 7.8 0.00017 26.7 4.8 39 17-73 155-193 (193)
137 PHA02125 thioredoxin-like prot 74.9 4.4 9.4E-05 24.5 3.0 31 15-51 32-62 (75)
138 PHA02278 thioredoxin-like prot 74.7 4.9 0.00011 26.3 3.4 30 19-51 62-91 (103)
139 PF05176 ATP-synt_10: ATP10 pr 73.0 19 0.00042 27.5 6.8 38 10-51 193-234 (252)
140 cd02987 Phd_like_Phd Phosducin 69.2 29 0.00062 24.7 6.6 59 6-72 112-171 (175)
141 cd02986 DLP Dim1 family, Dim1- 68.2 22 0.00047 24.2 5.5 64 11-78 50-113 (114)
142 PRK10954 periplasmic protein d 68.2 15 0.00034 26.4 5.1 21 18-41 156-176 (207)
143 cd02982 PDI_b'_family Protein 67.5 18 0.0004 22.3 4.8 23 17-39 54-78 (103)
144 smart00685 DM14 Repeats in fly 66.4 8.3 0.00018 23.4 2.8 23 66-88 35-57 (59)
145 TIGR02743 TraW type-F conjugat 64.3 8.1 0.00017 28.8 3.0 37 3-41 159-195 (202)
146 PF04592 SelP_N: Selenoprotein 64.1 14 0.0003 28.4 4.2 65 4-79 81-149 (238)
147 PRK10877 protein disulfide iso 63.5 14 0.0003 27.6 4.2 42 15-74 188-229 (232)
148 PF11009 DUF2847: Protein of u 63.4 14 0.00031 24.8 3.8 28 17-49 65-93 (105)
149 cd03007 PDI_a_ERp29_N PDIa fam 63.1 7.5 0.00016 26.4 2.4 33 18-51 67-101 (116)
150 PRK13738 conjugal transfer pil 62.7 12 0.00026 28.1 3.6 39 3-41 157-195 (209)
151 PLN02861 long-chain-fatty-acid 62.2 16 0.00035 30.6 4.8 54 17-74 482-538 (660)
152 PF02630 SCO1-SenC: SCO1/SenC; 61.9 2.6 5.6E-05 29.9 -0.0 21 28-50 153-173 (174)
153 KOG1651 Glutathione peroxidase 61.8 12 0.00027 27.4 3.5 33 32-77 138-170 (171)
154 cd03024 DsbA_FrnE DsbA family, 61.8 11 0.00024 26.3 3.2 20 16-35 162-181 (201)
155 PF03190 Thioredox_DsbH: Prote 61.2 26 0.00055 25.3 5.0 38 11-52 74-121 (163)
156 COG0365 Acs Acyl-coenzyme A sy 60.8 10 0.00023 32.0 3.4 58 13-75 382-441 (528)
157 KOG0908 Thioredoxin-like prote 60.6 23 0.00049 27.9 4.9 61 6-81 50-111 (288)
158 cd03025 DsbA_FrnE_like DsbA fa 59.0 10 0.00022 26.3 2.6 24 17-40 157-180 (193)
159 cd02972 DsbA_family DsbA famil 57.7 8.1 0.00018 22.9 1.7 21 17-37 71-91 (98)
160 PF14595 Thioredoxin_9: Thiore 57.0 7.4 0.00016 26.6 1.6 29 13-41 78-109 (129)
161 PHA02516 W baseplate wedge sub 56.5 15 0.00032 24.1 2.9 30 65-94 12-41 (103)
162 cd02988 Phd_like_VIAF Phosduci 55.7 66 0.0014 23.3 6.5 59 6-73 131-189 (192)
163 PF13590 DUF4136: Domain of un 55.3 29 0.00063 23.1 4.3 44 33-81 107-150 (151)
164 cd02952 TRP14_like Human TRX-r 55.1 12 0.00026 25.4 2.3 24 17-40 77-101 (119)
165 PLN02614 long-chain acyl-CoA s 54.0 26 0.00056 29.6 4.7 53 18-74 486-541 (666)
166 PLN02736 long-chain acyl-CoA s 52.7 28 0.0006 29.0 4.6 54 17-74 475-532 (651)
167 PTZ00237 acetyl-CoA synthetase 51.9 27 0.00058 29.3 4.4 52 19-74 481-536 (647)
168 PRK06087 short chain acyl-CoA 51.0 35 0.00076 27.3 4.8 45 27-75 411-455 (547)
169 cd03019 DsbA_DsbA DsbA family, 49.6 15 0.00032 25.0 2.2 21 17-40 131-151 (178)
170 PRK05788 cobalamin biosynthesi 49.4 1.1E+02 0.0023 24.1 7.2 73 5-88 48-125 (315)
171 PRK06145 acyl-CoA synthetase; 47.3 37 0.0008 26.6 4.3 45 27-75 374-418 (497)
172 PRK08279 long-chain-acyl-CoA s 46.3 24 0.00051 28.8 3.2 43 28-74 441-483 (600)
173 COG1021 EntE Peptide arylation 45.5 32 0.0007 29.1 3.8 52 17-72 402-456 (542)
174 PLN03051 acyl-activating enzym 45.4 29 0.00063 27.7 3.5 43 28-74 359-401 (499)
175 TIGR03443 alpha_am_amid L-amin 45.0 24 0.00053 32.0 3.3 43 28-74 680-722 (1389)
176 TIGR02188 Ac_CoA_lig_AcsA acet 45.0 34 0.00074 28.1 4.0 43 28-74 477-519 (625)
177 cd01659 TRX_superfamily Thiore 44.9 24 0.00052 18.0 2.2 17 23-39 47-63 (69)
178 PRK10524 prpE propionyl-CoA sy 44.9 29 0.00063 28.5 3.5 44 27-74 474-517 (629)
179 COG0117 RibD Pyrimidine deamin 44.9 38 0.00082 24.2 3.7 31 64-95 6-36 (146)
180 cd03020 DsbA_DsbC_DsbG DsbA fa 44.5 23 0.0005 25.1 2.6 26 14-41 157-182 (197)
181 PF11760 CbiG_N: Cobalamin syn 44.4 85 0.0018 20.2 6.5 74 2-86 5-83 (84)
182 PF07449 HyaE: Hydrogenase-1 e 43.5 67 0.0014 21.6 4.6 24 16-40 69-92 (107)
183 PRK06164 acyl-CoA synthetase; 42.8 37 0.0008 27.0 3.8 44 27-74 407-450 (540)
184 cd07984 LPLAT_LABLAT-like Lyso 42.5 95 0.0021 21.3 5.4 59 18-79 122-180 (192)
185 PRK06334 long chain fatty acid 42.1 32 0.0007 27.8 3.4 44 28-75 412-455 (539)
186 TIGR01217 ac_ac_CoA_syn acetoa 41.6 33 0.00071 28.7 3.4 44 27-74 500-543 (652)
187 KOG2501 Thioredoxin, nucleored 41.1 14 0.00031 26.6 1.1 34 15-51 101-134 (157)
188 PF02563 Poly_export: Polysacc 40.8 23 0.00049 22.0 1.9 38 33-78 32-69 (82)
189 PLN02654 acetate-CoA ligase 40.6 42 0.00092 28.2 3.9 45 26-74 513-557 (666)
190 PRK08276 long-chain-fatty-acid 39.5 59 0.0013 25.6 4.4 45 26-74 369-413 (502)
191 PHA03303 envelope glycoprotein 39.4 41 0.00088 24.3 3.1 30 64-93 119-148 (159)
192 PRK13390 acyl-CoA synthetase; 39.2 71 0.0015 25.2 4.8 42 29-74 382-423 (501)
193 PHA00415 25 baseplate wedge su 39.2 38 0.00083 23.4 2.9 30 65-94 30-59 (131)
194 PRK00174 acetyl-CoA synthetase 39.2 48 0.0011 27.3 4.0 44 27-74 484-527 (637)
195 PRK06155 crotonobetaine/carnit 38.8 53 0.0011 26.5 4.1 45 27-75 401-445 (542)
196 PF05225 HTH_psq: helix-turn-h 38.7 36 0.00079 19.0 2.3 16 64-79 1-16 (45)
197 TIGR00495 crvDNA_42K 42K curve 38.3 24 0.00052 28.5 2.1 60 8-76 303-363 (389)
198 PTZ00342 acyl-CoA synthetase; 38.3 47 0.001 28.9 3.9 53 18-74 559-615 (746)
199 PRK08633 2-acyl-glycerophospho 38.3 53 0.0012 28.8 4.3 45 28-76 1021-1065(1146)
200 TIGR02372 4_coum_CoA_lig 4-cou 37.8 33 0.00072 27.2 2.8 43 29-75 278-320 (386)
201 PF13911 AhpC-TSA_2: AhpC/TSA 37.6 33 0.00072 22.1 2.3 22 7-28 34-55 (115)
202 PRK06839 acyl-CoA synthetase; 37.6 36 0.00078 26.6 2.9 44 27-74 372-415 (496)
203 PRK03584 acetoacetyl-CoA synth 37.4 42 0.00092 27.8 3.4 44 27-74 499-542 (655)
204 PTZ00216 acyl-CoA synthetase; 37.2 54 0.0012 27.7 4.1 52 19-74 526-581 (700)
205 smart00775 LNS2 LNS2 domain. T 37.2 46 0.00099 23.2 3.1 34 8-41 118-153 (157)
206 TIGR02316 propion_prpE propion 37.2 45 0.00098 27.6 3.5 43 28-74 474-516 (628)
207 PRK08162 acyl-CoA synthetase; 36.9 57 0.0012 26.0 4.0 43 28-74 418-460 (545)
208 PRK07788 acyl-CoA synthetase; 36.8 43 0.00093 26.9 3.3 44 27-74 428-471 (549)
209 PTZ00062 glutaredoxin; Provisi 36.6 1.4E+02 0.0031 22.0 5.8 71 2-83 42-117 (204)
210 PLN02574 4-coumarate--CoA liga 36.5 56 0.0012 26.4 4.0 44 27-74 431-474 (560)
211 PRK07769 long-chain-fatty-acid 36.3 52 0.0011 27.1 3.8 42 28-74 466-507 (631)
212 KOG4614 Inner membrane protein 36.3 67 0.0014 25.2 4.1 42 27-78 245-286 (287)
213 TIGR02275 DHB_AMP_lig 2,3-dihy 35.9 67 0.0014 25.6 4.2 43 28-74 410-452 (527)
214 PRK05850 acyl-CoA synthetase; 35.8 62 0.0013 26.1 4.1 43 28-75 439-481 (578)
215 PRK07445 O-succinylbenzoic aci 35.4 41 0.00089 26.7 3.0 44 28-75 326-369 (452)
216 PLN03102 acyl-activating enzym 35.4 44 0.00095 27.3 3.2 43 28-74 422-464 (579)
217 PRK08315 AMP-binding domain pr 34.5 54 0.0012 26.2 3.5 44 28-75 429-472 (559)
218 PF12357 PLD_C: Phospholipase 34.5 9.5 0.00021 24.3 -0.6 24 9-32 41-64 (74)
219 PF00383 dCMP_cyt_deam_1: Cyti 33.8 38 0.00083 21.1 2.1 31 65-98 5-35 (102)
220 PF13848 Thioredoxin_6: Thiore 33.7 1.5E+02 0.0032 19.9 6.5 39 8-51 22-60 (184)
221 PRK07656 long-chain-fatty-acid 33.5 62 0.0013 25.3 3.7 44 28-75 394-437 (513)
222 PRK08751 putative long-chain f 33.4 63 0.0014 25.9 3.7 44 28-75 439-482 (560)
223 PRK06184 hypothetical protein; 33.0 1.4E+02 0.0029 24.3 5.6 53 13-80 447-499 (502)
224 KOG2792 Putative cytochrome C 32.8 73 0.0016 25.1 3.8 43 19-74 216-273 (280)
225 TIGR03098 ligase_PEP_1 acyl-Co 32.3 65 0.0014 25.3 3.6 42 29-74 397-438 (515)
226 TIGR03143 AhpF_homolog putativ 32.2 59 0.0013 27.1 3.5 29 17-52 517-545 (555)
227 COG1560 HtrB Lauroyl/myristoyl 32.1 1.4E+02 0.003 23.6 5.3 60 18-79 226-285 (308)
228 COG0694 Thioredoxin-like prote 31.6 1.1E+02 0.0025 20.0 4.1 44 32-83 34-78 (93)
229 PRK07638 acyl-CoA synthetase; 31.5 59 0.0013 25.5 3.2 43 29-75 364-406 (487)
230 PLN02860 o-succinylbenzoate-Co 31.5 57 0.0012 26.4 3.2 43 28-74 416-458 (563)
231 PRK09274 peptide synthase; Pro 31.1 47 0.001 26.6 2.7 42 29-74 423-464 (552)
232 PLN02309 5'-adenylylsulfate re 30.9 1.2E+02 0.0026 25.2 5.1 47 17-75 409-456 (457)
233 PRK06814 acylglycerophosphoeth 30.7 61 0.0013 28.7 3.5 44 28-75 1012-1055(1140)
234 COG3628 Phage baseplate assemb 30.5 93 0.002 21.4 3.6 32 64-95 18-49 (116)
235 PRK09029 O-succinylbenzoic aci 30.5 67 0.0015 25.0 3.4 44 27-75 333-376 (458)
236 PRK03640 O-succinylbenzoic aci 30.4 68 0.0015 25.0 3.4 44 27-74 361-404 (483)
237 PRK07470 acyl-CoA synthetase; 30.0 83 0.0018 25.0 3.9 45 27-75 395-439 (528)
238 PLN03052 acetate--CoA ligase; 29.4 70 0.0015 27.5 3.5 42 28-73 591-632 (728)
239 PF02743 Cache_1: Cache domain 29.4 25 0.00055 21.1 0.7 27 20-50 43-69 (81)
240 TIGR01130 ER_PDI_fam protein d 29.3 1.6E+02 0.0034 23.0 5.3 51 19-81 280-332 (462)
241 PLN02246 4-coumarate--CoA liga 29.2 64 0.0014 25.8 3.1 44 28-75 414-457 (537)
242 cd03022 DsbA_HCCA_Iso DsbA fam 29.0 48 0.001 22.7 2.1 19 17-35 155-173 (192)
243 PRK07867 acyl-CoA synthetase; 28.8 57 0.0012 26.3 2.8 46 26-75 381-426 (529)
244 PF13459 Fer4_15: 4Fe-4S singl 28.5 1.3E+02 0.0028 17.6 4.1 15 27-41 15-29 (65)
245 PRK13388 acyl-CoA synthetase; 28.5 84 0.0018 25.3 3.7 45 26-74 380-424 (540)
246 PF02484 Rhabdo_NV: Rhabdoviru 28.4 1E+02 0.0022 20.7 3.4 45 22-80 16-60 (111)
247 TIGR03027 pepcterm_export puta 28.4 92 0.002 21.7 3.5 40 31-78 20-59 (165)
248 PRK05852 acyl-CoA synthetase; 28.3 67 0.0015 25.6 3.1 44 27-74 409-452 (534)
249 PRK12583 acyl-CoA synthetase; 28.0 76 0.0016 25.3 3.4 43 28-74 430-472 (558)
250 PRK07059 Long-chain-fatty-acid 28.0 86 0.0019 25.2 3.7 45 27-75 436-480 (557)
251 PRK06553 lipid A biosynthesis 27.8 1.8E+02 0.0039 22.2 5.3 59 19-79 235-296 (308)
252 PF11211 DUF2997: Protein of u 27.7 1.3E+02 0.0028 17.3 3.7 36 33-79 2-37 (48)
253 PRK07514 malonyl-CoA synthase; 27.5 73 0.0016 24.9 3.1 44 28-75 379-422 (504)
254 PRK09088 acyl-CoA synthetase; 27.3 68 0.0015 25.1 2.9 43 28-74 363-405 (488)
255 COG1141 Fer Ferredoxin [Energy 26.9 1.1E+02 0.0024 18.9 3.3 15 27-41 17-31 (68)
256 PRK07868 acyl-CoA synthetase; 26.8 63 0.0014 28.9 2.9 43 28-74 838-880 (994)
257 PRK12406 long-chain-fatty-acid 26.7 80 0.0017 24.9 3.2 42 29-74 382-423 (509)
258 PRK11586 napB nitrate reductas 26.6 64 0.0014 23.1 2.4 33 19-57 89-121 (149)
259 PRK07529 AMP-binding domain pr 26.5 81 0.0018 26.2 3.4 43 28-74 447-489 (632)
260 PRK12755 phospho-2-dehydro-3-d 26.4 3.5E+02 0.0077 22.0 7.1 71 2-78 173-258 (353)
261 PRK08043 bifunctional acyl-[ac 26.3 87 0.0019 26.4 3.6 43 28-74 593-635 (718)
262 PRK13382 acyl-CoA synthetase; 26.3 74 0.0016 25.6 3.0 45 27-75 417-461 (537)
263 KOG4277 Uncharacterized conser 26.1 68 0.0015 26.2 2.7 29 19-51 90-118 (468)
264 PRK07008 long-chain-fatty-acid 26.1 85 0.0018 25.2 3.3 43 28-74 411-453 (539)
265 PRK06183 mhpA 3-(3-hydroxyphen 26.1 1.8E+02 0.0038 23.9 5.2 28 12-40 483-510 (538)
266 PF00571 CBS: CBS domain CBS d 25.4 90 0.002 16.9 2.5 31 17-53 17-47 (57)
267 TIGR01923 menE O-succinylbenzo 25.4 90 0.002 23.8 3.3 43 28-74 322-364 (436)
268 PRK13295 cyclohexanecarboxylat 25.4 87 0.0019 25.1 3.3 43 28-74 421-463 (547)
269 PRK05851 long-chain-fatty-acid 25.4 88 0.0019 25.1 3.3 42 29-75 399-440 (525)
270 TIGR01733 AA-adenyl-dom amino 25.4 61 0.0013 24.4 2.3 43 28-74 357-399 (408)
271 PLN02387 long-chain-fatty-acid 25.4 1.2E+02 0.0026 25.8 4.2 52 18-73 520-579 (696)
272 PRK12492 long-chain-fatty-acid 25.3 1.1E+02 0.0024 24.7 3.9 44 27-74 442-485 (562)
273 PLN02330 4-coumarate--CoA liga 25.2 79 0.0017 25.4 3.0 43 28-74 419-461 (546)
274 PRK08316 acyl-CoA synthetase; 25.0 80 0.0017 24.7 2.9 44 28-75 397-440 (523)
275 PTZ00032 60S ribosomal protein 24.9 38 0.00081 25.6 1.0 16 32-52 182-197 (211)
276 cd03072 PDI_b'_ERp44 PDIb' fam 24.3 2.1E+02 0.0045 18.6 5.2 55 13-79 53-111 (111)
277 PRK07798 acyl-CoA synthetase; 24.3 1.1E+02 0.0023 24.1 3.5 42 29-74 411-452 (533)
278 PRK06060 acyl-CoA synthetase; 24.1 87 0.0019 26.3 3.1 43 28-74 367-409 (705)
279 PRK05605 long-chain-fatty-acid 23.8 1.2E+02 0.0025 24.5 3.7 43 28-74 447-489 (573)
280 KOG1507 Nucleosome assembly pr 23.8 35 0.00076 27.7 0.7 13 86-98 245-257 (358)
281 PF06718 DUF1203: Protein of u 23.7 1.1E+02 0.0025 20.8 3.1 30 65-94 82-113 (117)
282 PRK08308 acyl-CoA synthetase; 23.6 91 0.002 24.0 3.0 42 29-74 294-335 (414)
283 PRK05677 long-chain-fatty-acid 23.6 90 0.0019 25.2 3.1 44 28-75 435-478 (562)
284 PLN02430 long-chain-fatty-acid 23.3 1.6E+02 0.0034 24.9 4.5 52 19-74 484-538 (660)
285 PRK06178 acyl-CoA synthetase; 23.0 1E+02 0.0023 24.7 3.3 43 28-74 444-486 (567)
286 PRK07768 long-chain-fatty-acid 23.0 1.1E+02 0.0023 24.5 3.3 42 29-74 417-458 (545)
287 cd06401 PB1_TFG The PB1 domain 22.9 2.2E+02 0.0048 18.3 4.5 49 44-98 3-51 (81)
288 PRK04319 acetyl-CoA synthetase 22.8 1.3E+02 0.0028 24.4 3.8 44 28-75 434-477 (570)
289 PRK05620 long-chain-fatty-acid 22.5 1E+02 0.0022 25.0 3.2 43 28-74 432-474 (576)
290 PLN02479 acetate-CoA ligase 22.5 1.2E+02 0.0025 24.6 3.5 43 28-74 432-474 (567)
291 PF07912 ERp29_N: ERp29, N-ter 22.5 2E+02 0.0043 20.1 4.2 30 17-48 69-100 (126)
292 PF04260 DUF436: Protein of un 22.5 27 0.00058 25.6 -0.2 27 67-93 2-28 (172)
293 TIGR03208 cyc_hxne_CoA_lg cycl 22.4 91 0.002 24.9 2.8 43 28-74 419-461 (538)
294 PRK06710 long-chain-fatty-acid 22.3 91 0.002 25.1 2.8 44 28-75 433-476 (563)
295 PF13899 Thioredoxin_7: Thiore 22.1 98 0.0021 18.6 2.4 11 28-38 72-82 (82)
296 PF00462 Glutaredoxin: Glutare 21.8 1E+02 0.0022 17.2 2.3 16 20-35 40-55 (60)
297 PRK07824 O-succinylbenzoic aci 21.5 1.1E+02 0.0023 23.0 3.0 43 28-75 236-278 (358)
298 PRK08314 long-chain-fatty-acid 21.4 1E+02 0.0022 24.5 3.0 44 28-75 418-461 (546)
299 smart00701 PGRP Animal peptido 21.4 74 0.0016 21.9 1.9 18 30-52 63-80 (142)
300 KOG0191 Thioredoxin/protein di 21.3 2.9E+02 0.0063 21.7 5.5 52 13-78 85-136 (383)
301 PRK10252 entF enterobactin syn 20.7 92 0.002 27.9 2.8 43 28-74 839-881 (1296)
302 PRK05857 acyl-CoA synthetase; 20.6 1.3E+02 0.0028 24.2 3.4 43 28-74 404-446 (540)
303 PHA00447 lysozyme 20.3 81 0.0018 21.8 1.9 22 28-54 41-62 (142)
304 PRK06187 long-chain-fatty-acid 20.1 1.3E+02 0.0028 23.4 3.2 43 28-74 397-439 (521)
305 PRK12476 putative fatty-acid-- 20.1 1.9E+02 0.004 23.8 4.3 41 29-74 479-519 (612)
No 1
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.72 E-value=3.2e-17 Score=115.45 Aligned_cols=85 Identities=55% Similarity=1.033 Sum_probs=76.9
Q ss_pred cccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCC
Q 034203 7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQK 86 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v~~~~t 86 (101)
..++||++.|+++.+++.||+..+|++||||++| +++|+|.+++.+.+....++.+.+++||+++|+|+..+..+|
T Consensus 87 ~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G----~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 162 (171)
T cd02969 87 HGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDG----KLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQT 162 (171)
T ss_pred CCCCceEEECCchHHHHHcCCCcCCcEEEECCCC----eEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCcccc
Confidence 4678999999999999999999999999999999 689999988765543345678999999999999999999999
Q ss_pred CCCcceeee
Q 034203 87 PSVGCSIKW 95 (101)
Q Consensus 87 ~~~GC~I~~ 95 (101)
+++||.++|
T Consensus 163 ~~~~~~~~~ 171 (171)
T cd02969 163 PSIGCSIKW 171 (171)
T ss_pred CCCCcccCC
Confidence 999999998
No 2
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.34 E-value=1.5e-12 Score=94.59 Aligned_cols=77 Identities=14% Similarity=0.298 Sum_probs=60.5
Q ss_pred ccceeEEEeChhHHHHHhCCc------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034203 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v 81 (101)
.++||++.|++++++++||+. ..|.+||||++|+ |+..+.+.+. ....++++++.|.+.+.+
T Consensus 99 ~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~--i~~~~~~~~~----------~~r~~~e~l~~l~a~~~~ 166 (199)
T PTZ00253 99 TMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGM--LRQITVNDMP----------VGRNVEEVLRLLEAFQFV 166 (199)
T ss_pred ccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCE--EEEEEecCCC----------CCCCHHHHHHHHHhhhhH
Confidence 589999999999999999986 4689999999995 3333333322 123678888989888887
Q ss_pred CCCCCCCCcceeeeeCCC
Q 034203 82 SSNQKPSVGCSIKWHPQT 99 (101)
Q Consensus 82 ~~~~t~~~GC~I~~~~~~ 99 (101)
.. +++||+++|++|+
T Consensus 167 ~~---~~~~cp~~w~~g~ 181 (199)
T PTZ00253 167 EK---HGEVCPANWKKGD 181 (199)
T ss_pred Hh---cCCEeCCCCCcCC
Confidence 75 5799999998875
No 3
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.80 E-value=2.5e-08 Score=72.87 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=56.4
Q ss_pred cccceeEEEeChhHHHHHhCCc--------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 7 LFLMWLITLFQSQDVARDFGAA--------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~--------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
..++||++.|++++++++||+. ..|.+||||++|+ |+..+.|.+...+ ...++.++|++|-..
T Consensus 86 ~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~--I~~~~~~~~~~gr-------~~~ell~~l~~lq~~ 156 (203)
T cd03016 86 VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKK--IRLILYYPATTGR-------NFDEILRVVDALQLT 156 (203)
T ss_pred CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCe--EEEEEecCCCCCC-------CHHHHHHHHHHHhhH
Confidence 5799999999999999999976 2457999999996 5555555543221 356788888876443
Q ss_pred CCCCCCCCCCCcceeeeeCCC
Q 034203 79 QPVSSNQKPSVGCSIKWHPQT 99 (101)
Q Consensus 79 ~~v~~~~t~~~GC~I~~~~~~ 99 (101)
. ...+-|.-.|.+|+
T Consensus 157 ~------~~~~~~p~~w~~g~ 171 (203)
T cd03016 157 D------KHKVATPANWKPGD 171 (203)
T ss_pred h------hcCcCcCCCCCCCC
Confidence 2 22577888887764
No 4
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.78 E-value=3.1e-08 Score=70.07 Aligned_cols=77 Identities=10% Similarity=0.236 Sum_probs=51.0
Q ss_pred cccceeEEEeChhHHHHHhCCc------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 7 LFLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
..++||++.|++++++++||+. ..|++||||++|+ |+.++.+..... .....+.++|+.+..
T Consensus 91 ~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~--I~~~~~~~~~~~-------~~~~~il~~l~~~~~--- 158 (173)
T cd03015 91 GKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGI--IRHITVNDLPVG-------RSVDETLRVLDALQF--- 158 (173)
T ss_pred cCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCe--EEEEEecCCCCC-------CCHHHHHHHHHHhhh---
Confidence 3589999999999999999986 5789999999995 444444332111 123455566655422
Q ss_pred CCCCCCCCCcceeeeeCC
Q 034203 81 VSSNQKPSVGCSIKWHPQ 98 (101)
Q Consensus 81 v~~~~t~~~GC~I~~~~~ 98 (101)
....-.-|...|+.|
T Consensus 159 ---~~~~~~~~~~~~~~~ 173 (173)
T cd03015 159 ---VEEHGEVCPANWKPG 173 (173)
T ss_pred ---hhhcCCCcCCCCCCC
Confidence 223445577777764
No 5
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.70 E-value=4.7e-08 Score=70.21 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=48.0
Q ss_pred cccee-EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 8 ~l~fp-vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
+++|| ++.|+++.++++||+..+|++||||++|+ ++.++.|.++ ...++..|+.+++..
T Consensus 120 ~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~--i~~~~~G~~~-----------~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 120 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGI--IRYRHAGDLN-----------PRVWESEIKPLWEKY 179 (185)
T ss_pred CCCCceEEEcCCccHHHhcCCCcCCeEEEECCCce--EEEEEecCCC-----------HHHHHHHHHHHHHHH
Confidence 57888 58899999999999999999999999996 5666666643 457888888877543
No 6
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.69 E-value=7.2e-08 Score=70.54 Aligned_cols=77 Identities=9% Similarity=0.179 Sum_probs=55.3
Q ss_pred ccceeEEEeChhHHHHHhCCc------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034203 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v 81 (101)
.++||++.|++++++++||+. ..|++||||++| +++|.-..+.... .+..++.++|+++.....
T Consensus 89 ~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G----~I~~~~~~~~~~g-----r~~~ellr~l~~l~~~~~- 158 (202)
T PRK13190 89 KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQ----IVRWMIYYPAETG-----RNIDEIIRITKALQVNWK- 158 (202)
T ss_pred CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCC----EEEEEEEeCCCCC-----CCHHHHHHHHHHhhhHHh-
Confidence 378999999999999999985 589999999999 4666654222111 146788888888765321
Q ss_pred CCCCCCCCcceeeeeCCC
Q 034203 82 SSNQKPSVGCSIKWHPQT 99 (101)
Q Consensus 82 ~~~~t~~~GC~I~~~~~~ 99 (101)
+ ..-|+-.|++|+
T Consensus 159 ----~-~~~~p~~w~~g~ 171 (202)
T PRK13190 159 ----R-KVATPANWQPGQ 171 (202)
T ss_pred ----c-CCCcCCCCCcCC
Confidence 1 356777776654
No 7
>PRK15000 peroxidase; Provisional
Probab=98.68 E-value=6.9e-08 Score=70.75 Aligned_cols=77 Identities=9% Similarity=0.206 Sum_probs=54.6
Q ss_pred ccceeEEEeChhHHHHHhCCc------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034203 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v 81 (101)
.++||++.|++++++++||+. ..|.+||||++|+ |+..+.|...-.+ ...++-++|+++.....
T Consensus 97 ~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~--I~~~~~~~~~~gr-------~~~eilr~l~al~~~~~- 166 (200)
T PRK15000 97 PVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGI--VRHQVVNDLPLGR-------NIDEMLRMVDALQFHEE- 166 (200)
T ss_pred ccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCE--EEEEEecCCCCCC-------CHHHHHHHHHHhhhHHh-
Confidence 479999999999999999987 6999999999995 4444555433221 35666677776544221
Q ss_pred CCCCCCCCcceeeeeCCC
Q 034203 82 SSNQKPSVGCSIKWHPQT 99 (101)
Q Consensus 82 ~~~~t~~~GC~I~~~~~~ 99 (101)
+ -.-|+..|.+|+
T Consensus 167 ----~-~~~~p~~w~~g~ 179 (200)
T PRK15000 167 ----H-GDVCPAQWEKGK 179 (200)
T ss_pred ----c-CCCcCCCCCCCC
Confidence 1 256788887664
No 8
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.62 E-value=1e-07 Score=67.55 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=46.4
Q ss_pred cccee-EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 8 ~l~fp-vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
+++|| ++.|++++++++|++..+|++|+||++|+ ++.++.|.++ ..++++.|+++++
T Consensus 115 ~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~--i~~~~~G~~~-----------~~~l~~~l~~~~~ 172 (173)
T TIGR00385 115 GNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGV--ILYRHAGPLN-----------NEVWTEGFLPAME 172 (173)
T ss_pred CCCCceEEECCCCchHHhcCCeeCCeEEEEcCCce--EEEEEeccCC-----------HHHHHHHHHHHhh
Confidence 46787 67899999999999999999999999996 5555667643 5678888887764
No 9
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.62 E-value=5.9e-08 Score=65.09 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=36.8
Q ss_pred cccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEee
Q 034203 7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHG 50 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G 50 (101)
.+++||++.|++++++++||+..+|++||||++|+ ++.++.|
T Consensus 83 ~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~--v~~~~~G 124 (126)
T cd03012 83 YGITYPVANDNDYATWRAYGNQYWPALYLIDPTGN--VRHVHFG 124 (126)
T ss_pred cCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCc--EEEEEec
Confidence 36899999999999999999999999999999996 5555555
No 10
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.61 E-value=8.3e-08 Score=70.28 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=47.3
Q ss_pred cccee---EEEeChhHHHHHhCCcccceE-EEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 8 FLMWL---ITLFQSQDVARDFGAACTPEF-FLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 8 ~l~fp---vl~D~~~~vA~~yga~~tP~~-fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
...|| ++.|+++.++.+||+...|++ ||||++|+ |+.++.|.++.. ....+...|+++|
T Consensus 121 ~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~Gk--Vv~~~~G~l~~e--------e~e~~~~li~~ll 183 (184)
T TIGR01626 121 KKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGK--VKFVKEGALSDS--------DIQTVISLVNGLL 183 (184)
T ss_pred cccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCc--EEEEEeCCCCHH--------HHHHHHHHHHHHh
Confidence 56777 999999999999999999999 99999998 888899987642 1233566666655
No 11
>PRK13189 peroxiredoxin; Provisional
Probab=98.59 E-value=2e-07 Score=69.38 Aligned_cols=77 Identities=12% Similarity=0.236 Sum_probs=53.4
Q ss_pred ccceeEEEeChhHHHHHhCCc-------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~-------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
.++||++.|.+++++++||+. ..|.+||||++|+ |+..+.+..... + +..++.++|+++.....
T Consensus 97 ~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~--Ir~~~~~~~~~g----r---~~~eilr~l~alq~~~~ 167 (222)
T PRK13189 97 EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGI--IRAILYYPQEVG----R---NMDEILRLVKALQTSDE 167 (222)
T ss_pred CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCe--EEEEEecCCCCC----C---CHHHHHHHHHHhhhHhh
Confidence 589999999999999999975 4699999999995 444443332211 1 35677788887654321
Q ss_pred CCCCCCCCCcceeeeeCCC
Q 034203 81 VSSNQKPSVGCSIKWHPQT 99 (101)
Q Consensus 81 v~~~~t~~~GC~I~~~~~~ 99 (101)
...-|...|.+|+
T Consensus 168 ------~~~~~p~~w~~g~ 180 (222)
T PRK13189 168 ------KGVATPANWPPND 180 (222)
T ss_pred ------cCcCcCCCCCCCC
Confidence 1366777777665
No 12
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.54 E-value=3.4e-07 Score=66.72 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=53.5
Q ss_pred cccceeEEEeChhHHHHHhCCc----cc--ceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 7 LFLMWLITLFQSQDVARDFGAA----CT--PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~----~t--P~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
.+++||+|.|++++++++||+. .. |.+||||++| +++|.-.-+.... .+..++-++|+++-.-+
T Consensus 90 ~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G----~I~~~~~~~~~~~-----~~~~eil~~l~alq~~~- 159 (187)
T PRK10382 90 AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQG----IIQAIEVTAEGIG-----RDASDLLRKIKAAQYVA- 159 (187)
T ss_pred cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCC----EEEEEEEeCCCCC-----CCHHHHHHHHHhhhhHh-
Confidence 4789999999999999999983 34 9999999999 4666543222111 13566666666654321
Q ss_pred CCCCCCCCCcceeeeeCCC
Q 034203 81 VSSNQKPSVGCSIKWHPQT 99 (101)
Q Consensus 81 v~~~~t~~~GC~I~~~~~~ 99 (101)
.+.=.-|+..|++|+
T Consensus 160 ----~~~g~~~p~~w~~~~ 174 (187)
T PRK10382 160 ----SHPGEVCPAKWKEGE 174 (187)
T ss_pred ----hcCCeEeCCCCCcCC
Confidence 122356888887664
No 13
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.52 E-value=3.4e-07 Score=62.23 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=37.0
Q ss_pred cccceeEEEeChhHHHHHhCCc---------ccceEEEEeCCCCCceeEEEeecC
Q 034203 7 LFLMWLITLFQSQDVARDFGAA---------CTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~---------~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
.+++||++.|++++++++||+. .+|++||||++|+ ++|++.-
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~----V~~~~~g 133 (146)
T PF08534_consen 83 YGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGK----VVYRHVG 133 (146)
T ss_dssp TTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSB----EEEEEES
T ss_pred hCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCE----EEEEEeC
Confidence 5689999999999999999999 9999999999994 6666553
No 14
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.48 E-value=6.1e-07 Score=64.68 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=50.9
Q ss_pred cccceeEEEeChhHHHHHhCCc------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 7 LFLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
..++||++.|++++++++||+. ..|++||||++|+ ++|.-.-+.... ....++.++|+++--
T Consensus 90 ~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~----I~~~~~~~~~~~-----~~~~~ll~~l~~~~~--- 157 (187)
T TIGR03137 90 GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGV----IQAVEITDNGIG-----RDASELLRKIKAAQY--- 157 (187)
T ss_pred cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCE----EEEEEEeCCCCC-----CCHHHHHHHHHHhhh---
Confidence 3689999999999999999986 4699999999995 555443222111 124455555543322
Q ss_pred CCCCCCCCCcceeeeeCCC
Q 034203 81 VSSNQKPSVGCSIKWHPQT 99 (101)
Q Consensus 81 v~~~~t~~~GC~I~~~~~~ 99 (101)
+. .+.-..|+..|..++
T Consensus 158 ~~--~~~~~~~~~~~~~~~ 174 (187)
T TIGR03137 158 VA--AHPGEVCPAKWKEGA 174 (187)
T ss_pred HH--hcCCeeeCCCCCcCC
Confidence 11 121367888886654
No 15
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.47 E-value=7.6e-07 Score=66.10 Aligned_cols=75 Identities=12% Similarity=0.183 Sum_probs=52.5
Q ss_pred ccceeEEEeChhHHHHHhCCc-------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~-------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
.++||++.|++++++++||+. ..|++||||++| ++++......... -...++.++|++|....
T Consensus 90 ~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG----~Ir~~~~~p~~~g-----r~~~eilr~l~~lq~~~- 159 (215)
T PRK13599 90 AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKG----TIRLIMYYPQEVG-----RNVDEILRALKALQTAD- 159 (215)
T ss_pred CCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCC----EEEEEEEcCCCCC-----CCHHHHHHHHHHhhhhh-
Confidence 689999999999999999973 679999999999 4666654222111 13567777887763322
Q ss_pred CCCCCCCCCcceeeeeC
Q 034203 81 VSSNQKPSVGCSIKWHP 97 (101)
Q Consensus 81 v~~~~t~~~GC~I~~~~ 97 (101)
...+.|...|.+
T Consensus 160 -----~~~~~~p~~w~~ 171 (215)
T PRK13599 160 -----QYGVALPEKWPN 171 (215)
T ss_pred -----hcCCCcCCCCCC
Confidence 124566777765
No 16
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.47 E-value=7.1e-07 Score=66.20 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=52.3
Q ss_pred ccceeEEEeChhHHHHHhCCc-------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~-------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
.++||++.|.+++++++||+. ..|.+||||++|+ |+.++.+.+.-.+ ...++-++|++|-.
T Consensus 95 ~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~--Ir~~~~~~~~~gr-------~~~eilr~l~alq~--- 162 (215)
T PRK13191 95 EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGT--VRLILYYPMEIGR-------NIDEILRAIRALQL--- 162 (215)
T ss_pred CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCE--EEEEEecCCCCCC-------CHHHHHHHHHHhhh---
Confidence 689999999999999999963 4699999999995 4444455432211 35666677776532
Q ss_pred CCCCCCCCCcceeeeeC
Q 034203 81 VSSNQKPSVGCSIKWHP 97 (101)
Q Consensus 81 v~~~~t~~~GC~I~~~~ 97 (101)
. .....-|+..|++
T Consensus 163 ~---~~~~~~~P~~w~~ 176 (215)
T PRK13191 163 V---DKAGVVTPANWPN 176 (215)
T ss_pred h---hhcCCCcCCCCCC
Confidence 1 1114668888875
No 17
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.45 E-value=3.1e-07 Score=61.21 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=38.7
Q ss_pred cccee-EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCC
Q 034203 8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDD 54 (101)
Q Consensus 8 ~l~fp-vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd 54 (101)
.++|| ++.|..+.+++.||+..+|++|+||++|+ ++.+|.|.++.
T Consensus 78 ~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~--v~~~~~G~~~~ 123 (127)
T cd03010 78 GNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGI--IRYKHVGPLTP 123 (127)
T ss_pred CCCCceEEECCcchHHHhcCCCCCCeEEEECCCce--EEEEEeccCCh
Confidence 34564 77899999999999999999999999997 67778898764
No 18
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.40 E-value=5.1e-07 Score=60.61 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=40.2
Q ss_pred cccceeEEEeChhHHHHHhCCccc---------ceEEEEeCCCCCceeEEEeecCC
Q 034203 7 LFLMWLITLFQSQDVARDFGAACT---------PEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~~t---------P~~fliD~~G~~~v~~~Y~G~id 53 (101)
..++||++.|++++++++||+..+ |++||||++|+ |+.+|.|...
T Consensus 78 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~--v~~~~~g~~~ 131 (140)
T cd03017 78 YGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGK--IVKVWRKVKP 131 (140)
T ss_pred hCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCE--EEEEEecCCc
Confidence 367899999999999999999988 99999999997 7778888864
No 19
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.36 E-value=1.8e-06 Score=59.94 Aligned_cols=56 Identities=21% Similarity=0.387 Sum_probs=45.1
Q ss_pred cccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..++||++.|.+++++++||+..+|++|+||++|+ +.-.+.|..+ ...+++.++++
T Consensus 116 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~--i~~~~~g~~~-----------~~~l~~~l~~~ 171 (173)
T PRK03147 116 YGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGK--VVKVITGEMT-----------EEQLEEYLEKI 171 (173)
T ss_pred hCCCceEEECCcchHHHHcCCCCcCeEEEECCCCc--EEEEEeCCCC-----------HHHHHHHHHHh
Confidence 35789999999999999999999999999999996 4445666643 45677766654
No 20
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.36 E-value=2.1e-06 Score=65.83 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=53.8
Q ss_pred cccceeEEEeChhHHHHHhCCc-----ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034203 7 LFLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~-----~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v 81 (101)
..++||++.|++++++++||+. ..|.+||||++| +++|.-..+.... -..+++-++|+++-.-+
T Consensus 160 ~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG----~I~~~~~~~~~~g-----r~v~eiLr~l~alq~~~-- 228 (261)
T PTZ00137 160 SPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAG----VVKHVAVYDLGLG-----RSVDETLRLFDAVQFAE-- 228 (261)
T ss_pred cCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCC----EEEEEEEeCCCCC-----CCHHHHHHHHHHhchhh--
Confidence 4689999999999999999985 589999999999 4666544332211 13566667777665322
Q ss_pred CCCCCCCCcceeeeeCCC
Q 034203 82 SSNQKPSVGCSIKWHPQT 99 (101)
Q Consensus 82 ~~~~t~~~GC~I~~~~~~ 99 (101)
..-.-|+-.|.+|+
T Consensus 229 ----~~g~~cPanW~~g~ 242 (261)
T PTZ00137 229 ----KTGNVCPVNWKQGD 242 (261)
T ss_pred ----hcCCCcCCCCCcCC
Confidence 11355777776654
No 21
>PLN02412 probable glutathione peroxidase
Probab=98.34 E-value=8.2e-07 Score=62.96 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=45.4
Q ss_pred ccceeEEEe--Chh-HHHHHhC-------------CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHH
Q 034203 8 FLMWLITLF--QSQ-DVARDFG-------------AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLA 71 (101)
Q Consensus 8 ~l~fpvl~D--~~~-~vA~~yg-------------a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~A 71 (101)
+++||++.| .++ .+++.|+ +...|++||||++|+ |+.+|.|.++ ...++.+
T Consensus 93 ~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~--vv~~~~g~~~-----------~~~l~~~ 159 (167)
T PLN02412 93 KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGK--VVQRYAPTTS-----------PLKIEKD 159 (167)
T ss_pred CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCc--EEEEECCCCC-----------HHHHHHH
Confidence 689999974 554 7777775 455799999999998 7777877754 4579999
Q ss_pred HHHHHcC
Q 034203 72 IECVLSG 78 (101)
Q Consensus 72 I~alLag 78 (101)
|+++|+.
T Consensus 160 i~~~l~~ 166 (167)
T PLN02412 160 IQNLLGQ 166 (167)
T ss_pred HHHHHhh
Confidence 9998864
No 22
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.33 E-value=2.1e-06 Score=62.79 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=46.8
Q ss_pred ccceeEEEe-ChhHHHHHhCC--cccceEEEEeCCCCCceeE-EEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 8 FLMWLITLF-QSQDVARDFGA--ACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 8 ~l~fpvl~D-~~~~vA~~yga--~~tP~~fliD~~G~~~v~~-~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
.++||++.| ..+.+++.||. ..+|++||||++|+ ++. ++.|.++ ...+++.|+.+++-
T Consensus 112 ~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~--i~~~~~~G~~~-----------~~~L~~~I~~ll~~ 173 (181)
T PRK13728 112 DTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL--EALPLLQGATD-----------AAGFMARMDTVLQM 173 (181)
T ss_pred CCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc--EEEEEEECCCC-----------HHHHHHHHHHHHhh
Confidence 368999996 67788899995 69999999999996 332 6899875 45888888888864
No 23
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.30 E-value=2.2e-06 Score=59.03 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=36.5
Q ss_pred ccceeEEEeChhHHHHHhCCccc------------ceEEEEeCCCCCceeEEEeec
Q 034203 8 FLMWLITLFQSQDVARDFGAACT------------PEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~t------------P~~fliD~~G~~~v~~~Y~G~ 51 (101)
+++||++.|+++.++++||+... |++||||++|+ |+.+|.|.
T Consensus 86 ~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~g~ 139 (154)
T PRK09437 86 LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGK--IEHVFDKF 139 (154)
T ss_pred CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCE--EEEEEcCC
Confidence 67999999999999999998754 77899999997 77778774
No 24
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.29 E-value=1.3e-06 Score=57.19 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=35.3
Q ss_pred ccceeEEEeChhHHHHHhCCc------ccceEEEEeCCCCCceeEEEe
Q 034203 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH 49 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~------~tP~~fliD~~G~~~v~~~Y~ 49 (101)
.++||++.|.+++++++||+. .+|++||||++| +++|+
T Consensus 81 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g----~I~~~ 124 (124)
T PF00578_consen 81 GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDG----KIRYA 124 (124)
T ss_dssp TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTS----BEEEE
T ss_pred ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCC----EEEeC
Confidence 489999999999999999999 999999999999 57774
No 25
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.24 E-value=2.1e-06 Score=64.90 Aligned_cols=58 Identities=19% Similarity=0.105 Sum_probs=43.9
Q ss_pred cccceeEEE--eChh-HHHHHhC-------------CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHH
Q 034203 7 LFLMWLITL--FQSQ-DVARDFG-------------AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRL 70 (101)
Q Consensus 7 ~~l~fpvl~--D~~~-~vA~~yg-------------a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~ 70 (101)
.+++||++. |.++ .++..|+ +...|++||||++|+ |+.+|.|.++ ..+|+.
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk--Vv~~~~G~~~-----------~~~le~ 228 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK--VVERYPPTTS-----------PFQIEK 228 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCc--EEEEECCCCC-----------HHHHHH
Confidence 478999985 4445 5555553 234699999999998 7888888763 468999
Q ss_pred HHHHHHc
Q 034203 71 AIECVLS 77 (101)
Q Consensus 71 AI~alLa 77 (101)
.|+++|+
T Consensus 229 ~I~~lL~ 235 (236)
T PLN02399 229 DIQKLLA 235 (236)
T ss_pred HHHHHhc
Confidence 9999986
No 26
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.21 E-value=2.1e-06 Score=57.74 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.0
Q ss_pred cccceeEEEeChhHHHHHhCCc-----------------------------ccceEEEEeCCCC
Q 034203 7 LFLMWLITLFQSQDVARDFGAA-----------------------------CTPEFFLFKKDGR 41 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~-----------------------------~tP~~fliD~~G~ 41 (101)
..++||++.|++++++++||+. ..|.+||||++|+
T Consensus 78 ~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~ 141 (149)
T cd02970 78 KFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGT 141 (149)
T ss_pred cCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCe
Confidence 3679999999999999999984 7999999999995
No 27
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.17 E-value=3.6e-06 Score=55.38 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=38.9
Q ss_pred ccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
.++||++.|++++++++|++..+|+.||||++| ++.++.|..+
T Consensus 72 ~~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g---i~~~~~g~~~ 114 (123)
T cd03011 72 GYGFPVINDPDGVISARWGVSVTPAIVIVDPGG---IVFVTTGVTS 114 (123)
T ss_pred CCCccEEECCCcHHHHhCCCCcccEEEEEcCCC---eEEEEeccCC
Confidence 579999999999999999999999999999988 5778888764
No 28
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.12 E-value=4.7e-06 Score=52.32 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=35.4
Q ss_pred ccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEee
Q 034203 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHG 50 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G 50 (101)
+++||++.|...+++++||+..+|++||+|++|+ ++.+|.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~--v~~~~~g 116 (116)
T cd02966 76 GITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGR--IRARHVG 116 (116)
T ss_pred CCCcceEEcCcchHHHhcCcCccceEEEECCCCc--EEEEecC
Confidence 3789999999999999999999999999999996 4444544
No 29
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.10 E-value=1.1e-05 Score=58.15 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=44.4
Q ss_pred ccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
+++||.+ +.+++++++||+..+|++|+||++| +++++|.++ +.+.+++.++++-+|-
T Consensus 126 ~~~~~~~-~~~~~i~~~y~v~~~P~~~lID~~G----~I~~~g~~~----------~~~~le~ll~~l~~~~ 182 (189)
T TIGR02661 126 ELGGERY-VVSAEIGMAFQVGKIPYGVLLDQDG----KIRAKGLTN----------TREHLESLLEADREGF 182 (189)
T ss_pred CCCccee-echhHHHHhccCCccceEEEECCCC----eEEEccCCC----------CHHHHHHHHHHHHcCc
Confidence 3556543 3578999999999999999999999 588887543 3567899888886664
No 30
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.2e-05 Score=57.77 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=33.8
Q ss_pred cccceeEEEeChhHHHHHhCCcc------------cceEEEEeCCCCCceeEEE
Q 034203 7 LFLMWLITLFQSQDVARDFGAAC------------TPEFFLFKKDGRRPFQLVY 48 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~~------------tP~~fliD~~G~~~v~~~Y 48 (101)
.+|+||.|-|++++++++||+.. -+.+||||++|+ |+..|
T Consensus 85 ~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~--I~~~~ 136 (157)
T COG1225 85 HGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGK--IRYVW 136 (157)
T ss_pred hCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCe--EEEEe
Confidence 47899999999999999999854 588999999996 44444
No 31
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.09 E-value=5.6e-06 Score=53.80 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=32.7
Q ss_pred cc-ceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 8 FL-MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 8 ~l-~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.+ .||++.| ++++++||+..+|++||||++| +++|+|-
T Consensus 75 ~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G----~v~~~~~ 113 (114)
T cd02967 75 GLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAG----VIAAKGL 113 (114)
T ss_pred CCCCCcEEec--HHHHhhcCCCCcCeEEEECCCC----eEEeccc
Confidence 44 4898885 5699999999999999999999 6999884
No 32
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.06 E-value=1.2e-05 Score=54.52 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=35.8
Q ss_pred ccceeEEEeCh--hHHHHHhCCcc------cceEEEEeCCCCCceeEEEeecCCC
Q 034203 8 FLMWLITLFQS--QDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDD 54 (101)
Q Consensus 8 ~l~fpvl~D~~--~~vA~~yga~~------tP~~fliD~~G~~~v~~~Y~G~idd 54 (101)
+++||++.|.+ +++++.||+.. .|++||||++| +++|+....+
T Consensus 84 ~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G----~v~~~~~~~~ 134 (149)
T cd03018 84 GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDG----IIRYAWVSDD 134 (149)
T ss_pred CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCC----EEEEEEecCC
Confidence 58999999988 99999999884 34899999999 5777766555
No 33
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.02 E-value=1.1e-05 Score=53.92 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=34.7
Q ss_pred ccceeEEEeChhHHHHHhCCcccc---------eEEEEeCCCCCceeEEEeec
Q 034203 8 FLMWLITLFQSQDVARDFGAACTP---------EFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~tP---------~~fliD~~G~~~v~~~Y~G~ 51 (101)
.++||++.|+++.++++||+..+| ++||||++|+ |+.+|.|.
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~--i~~~~~~~ 129 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGK--IRYVEVEP 129 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCc--EEEEEecC
Confidence 678999999999999999999776 7999999995 44444444
No 34
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.97 E-value=2.2e-05 Score=55.52 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=34.9
Q ss_pred ccc-eeEEEe-ChhHHHHHhCCcccc---------eEEEEeCCCCCceeEEEeecCCC
Q 034203 8 FLM-WLITLF-QSQDVARDFGAACTP---------EFFLFKKDGRRPFQLVYHGQFDD 54 (101)
Q Consensus 8 ~l~-fpvl~D-~~~~vA~~yga~~tP---------~~fliD~~G~~~v~~~Y~G~idd 54 (101)
+++ ||++.| ++++++++||+...| ++||||++| +++|....++
T Consensus 98 ~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G----~I~~~~~~~~ 151 (167)
T PRK00522 98 GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENN----KVVYSELVPE 151 (167)
T ss_pred CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCC----eEEEEEECCC
Confidence 566 799999 566999999998877 999999999 5777765443
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.96 E-value=1e-05 Score=55.94 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=41.7
Q ss_pred cccceeEEEe-----ChhHHHHHhCCc---ccce----EEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 7 LFLMWLITLF-----QSQDVARDFGAA---CTPE----FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 7 ~~l~fpvl~D-----~~~~vA~~yga~---~tP~----~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.+++||++.| ++...+-.|.+. ..|+ +||||++|+ |+.+|.|.++ .+.++..|++
T Consensus 85 ~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~--v~~~~~g~~~-----------~~~l~~~i~~ 151 (153)
T TIGR02540 85 YGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQ--VVKFWRPEEP-----------VEEIRPEITA 151 (153)
T ss_pred cCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCc--EEEEECCCCC-----------HHHHHHHHHH
Confidence 3789999987 333444455433 4898 999999998 7888888854 3578888887
Q ss_pred HH
Q 034203 75 VL 76 (101)
Q Consensus 75 lL 76 (101)
+|
T Consensus 152 l~ 153 (153)
T TIGR02540 152 LV 153 (153)
T ss_pred hC
Confidence 64
No 36
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.93 E-value=1.7e-05 Score=56.87 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=41.9
Q ss_pred cccceeEEEe--ChhHH-HHHh---------------CCcccce---EEEEeCCCCCceeEEEeecCCCCCCCCCCCCcH
Q 034203 7 LFLMWLITLF--QSQDV-ARDF---------------GAACTPE---FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTG 65 (101)
Q Consensus 7 ~~l~fpvl~D--~~~~v-A~~y---------------ga~~tP~---~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~ 65 (101)
.+++||++.| .++.. ++.| ++...|+ +||||++|+ |+.+|.|.++ .
T Consensus 104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~--Iv~~~~g~~~-----------~ 170 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGK--VVKYFSPKVN-----------P 170 (183)
T ss_pred cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCC--EEEEECCCCC-----------H
Confidence 4789999955 55543 3444 5667895 699999997 6777777653 3
Q ss_pred HHHHHHHHHHHc
Q 034203 66 RDIRLAIECVLS 77 (101)
Q Consensus 66 ~~L~~AI~alLa 77 (101)
..+++.|+.+|+
T Consensus 171 ~~l~~~I~~ll~ 182 (183)
T PTZ00256 171 NEMIQDIEKLLN 182 (183)
T ss_pred HHHHHHHHHHhc
Confidence 468888888875
No 37
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.88 E-value=3.8e-05 Score=54.48 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=38.6
Q ss_pred ceeEEEeChhHHH-HHh---CCcccceEEEEeCCCCCceeE-EEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 10 MWLITLFQSQDVA-RDF---GAACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 10 ~fpvl~D~~~~vA-~~y---ga~~tP~~fliD~~G~~~v~~-~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
+||+.+|.++... ..| ++..+|++||||++|+ ++. ++.|.++ ...+++.|+.+|
T Consensus 95 ~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~--~i~~~~~G~~s-----------~~~l~~~I~~ll 153 (153)
T TIGR02738 95 GFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTR--KAYPVLQGAVD-----------EAELANRMDEIL 153 (153)
T ss_pred ccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCC--EEEEEeecccC-----------HHHHHHHHHHhC
Confidence 4777777656655 445 7899999999999985 222 4667654 457888888765
No 38
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.86 E-value=1.3e-05 Score=55.49 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=34.8
Q ss_pred cccceeEEEeC--hhH-HHHHhC--Ccccc-----------eEEEEeCCCCCceeEEEeecCC
Q 034203 7 LFLMWLITLFQ--SQD-VARDFG--AACTP-----------EFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 7 ~~l~fpvl~D~--~~~-vA~~yg--a~~tP-----------~~fliD~~G~~~v~~~Y~G~id 53 (101)
.+++||++.|. ++. .+++|+ ....| ++||||++|+ ++.+|.|.++
T Consensus 84 ~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~--i~~~~~G~~~ 144 (152)
T cd00340 84 YGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGE--VVKRFAPTTD 144 (152)
T ss_pred cCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCc--EEEEECCCCC
Confidence 46899999863 444 577777 45677 7999999998 7778888864
No 39
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.78 E-value=6.2e-05 Score=66.89 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=48.1
Q ss_pred cccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
..++||++.|.+++++++|++..+|++||||++|+ +..++.|... ...|++.|+++|.
T Consensus 480 ~~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~--iv~~~~G~~~-----------~~~l~~~l~~~l~ 537 (1057)
T PLN02919 480 YNISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGK--LIAQLSGEGH-----------RKDLDDLVEAALQ 537 (1057)
T ss_pred hCCCccEEECCchHHHHhcCCCccceEEEECCCCe--EEEEEecccC-----------HHHHHHHHHHHHH
Confidence 36789999999999999999999999999999997 5566777543 4677777777755
No 40
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.78 E-value=0.00017 Score=50.06 Aligned_cols=52 Identities=12% Similarity=0.270 Sum_probs=42.9
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCC
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSS 83 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v~~ 83 (101)
.+++++|++..+|++++||++|+ +.-++.|... ...+++.|++++++++.+.
T Consensus 66 ~~~~~~~~V~~iPt~v~~~~~G~--~v~~~~G~~~-----------~~~l~~~l~~l~~~~~~~~ 117 (142)
T cd02950 66 LPEIDRYRVDGIPHFVFLDREGN--EEGQSIGLQP-----------KQVLAQNLDALVAGEPLPY 117 (142)
T ss_pred HHHHHHcCCCCCCEEEEECCCCC--EEEEEeCCCC-----------HHHHHHHHHHHHcCCCCCc
Confidence 47899999999999999999997 5556777632 5789999999999986554
No 41
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.78 E-value=5.9e-05 Score=62.86 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=37.6
Q ss_pred ceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 10 ~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
+||++.|.+++++++|++...|++||||++|+ ++-++.|.++
T Consensus 120 ~~pV~~D~~~~lak~fgV~giPTt~IIDkdGk--IV~~~~G~~~ 161 (521)
T PRK14018 120 KLPVLTDNGGTLAQSLNISVYPSWAIIGKDGD--VQRIVKGSIS 161 (521)
T ss_pred ccceeccccHHHHHHcCCCCcCeEEEEcCCCe--EEEEEeCCCC
Confidence 47999999999999999999999999999997 6667888764
No 42
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.67 E-value=0.00012 Score=49.48 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=34.0
Q ss_pred cceeEEEeCh-hHHHHHhCCcc------cceEEEEeCCCCCceeEEEeec
Q 034203 9 LMWLITLFQS-QDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 9 l~fpvl~D~~-~~vA~~yga~~------tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
..||++.|.. +.++++||+.. .|++||||++|+ |+..+.|.
T Consensus 82 ~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~--I~~~~~~~ 129 (143)
T cd03014 82 DNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGK--VIYVELVP 129 (143)
T ss_pred CCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCe--EEEEEECC
Confidence 3799999996 99999999864 799999999996 55555554
No 43
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00028 Score=52.30 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=44.4
Q ss_pred ccceeEEEeChhHHHHHhCCcc------cceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 8 FLMWLITLFQSQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~------tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
.++||++-|.++++|++||+-. .-.+||||++| ++++.=..+...++ ...++-+.|++|.-
T Consensus 96 ~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g----~ir~~~v~~~~iGR-----n~dEilR~idAlq~ 162 (194)
T COG0450 96 KIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDG----VIRHILVNPLTIGR-----NVDEILRVIDALQF 162 (194)
T ss_pred ceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCC----eEEEEEEecCCCCc-----CHHHHHHHHHHHHH
Confidence 4899999999999999999763 55789999999 46655443332222 24677777777654
No 44
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.58 E-value=0.0001 Score=49.36 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=32.7
Q ss_pred ccceeEEEeCh---hHHHHHhCCccc--------------ceEEEEeCCCCCceeEEEee
Q 034203 8 FLMWLITLFQS---QDVARDFGAACT--------------PEFFLFKKDGRRPFQLVYHG 50 (101)
Q Consensus 8 ~l~fpvl~D~~---~~vA~~yga~~t--------------P~~fliD~~G~~~v~~~Y~G 50 (101)
+++||++.|+. +.++++||+... |.+||||++|+ |+-.|.|
T Consensus 85 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~~ 142 (142)
T cd02968 85 GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGK--LVRYYGG 142 (142)
T ss_pred CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCC--EEEeecC
Confidence 46899999975 899999997643 56999999997 5555654
No 45
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.50 E-value=0.00016 Score=52.85 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=40.1
Q ss_pred cccceeEEEeC------hhH--------HHHHhCCccc-------ceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcH
Q 034203 7 LFLMWLITLFQ------SQD--------VARDFGAACT-------PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTG 65 (101)
Q Consensus 7 ~~l~fpvl~D~------~~~--------vA~~yga~~t-------P~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~ 65 (101)
.+++||++.|. .+. ++..|++... |++||||++|+ |+.+|.|.++ .
T Consensus 101 ~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~--iv~~~~g~~~-----------~ 167 (199)
T PTZ00056 101 NKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGN--VVAYFSPRTE-----------P 167 (199)
T ss_pred cCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCc--EEEEeCCCCC-----------H
Confidence 36899999762 222 2334544322 37999999997 6666666542 3
Q ss_pred HHHHHHHHHHHcCC
Q 034203 66 RDIRLAIECVLSGQ 79 (101)
Q Consensus 66 ~~L~~AI~alLag~ 79 (101)
..++..|+.+|+.+
T Consensus 168 ~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 168 LELEKKIAELLGVK 181 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 57999999998765
No 46
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.36 E-value=0.00054 Score=45.56 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=38.2
Q ss_pred hhHHHHHhCCcccceEEEEeCC-CCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 18 SQDVARDFGAACTPEFFLFKKD-GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~-G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
..+++++|++..+|+++++|++ |+ +..++.|..+ ...+...|+.++++
T Consensus 73 ~~~l~~~~~v~~~Pt~~~~~~~gg~--~~~~~~G~~~-----------~~~~~~~l~~~~~~ 121 (125)
T cd02951 73 EKELARKYRVRFTPTVIFLDPEGGK--EIARLPGYLP-----------PDEFLAYLEYVQEK 121 (125)
T ss_pred HHHHHHHcCCccccEEEEEcCCCCc--eeEEecCCCC-----------HHHHHHHHHHHHhh
Confidence 3789999999999999999999 76 4566777642 45788888887765
No 47
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.23 E-value=0.0007 Score=43.74 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=24.8
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
.++++.||+..||+.+++|++|+ +..++.|.++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~--~v~~~~G~~~ 104 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGK--IVYRIPGYLS 104 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSC--EEEEEESS--
T ss_pred HHHHHHcCCCccCEEEEEcCCCC--EEEEecCCCC
Confidence 46999999999999999999997 4456788864
No 48
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.20 E-value=0.00039 Score=49.09 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=28.2
Q ss_pred eEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 12 pvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
|+.-+..+.++++||+...|++||||++|+ ++.++.
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~----Vv~~~~ 130 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGD----VLAANA 130 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCc----EEeeCh
Confidence 334344679999999999999999999994 555544
No 49
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.17 E-value=0.0002 Score=47.85 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=23.8
Q ss_pred eChhHHHHHhCCcccceEEEEeCCCC
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDGR 41 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G~ 41 (101)
|..+.++++||+..+|++||||++|+
T Consensus 86 ~~~~~~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 86 ERRSRLNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCC
Confidence 56678999999999999999999995
No 50
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.62 E-value=0.014 Score=38.83 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=42.1
Q ss_pred ccceeE-EEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 8 FLMWLI-TLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 8 ~l~fpv-l~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
.+.|-. =.|...+++++|++...|+.++++..|+.+ .++|.|... .+++...|++++.
T Consensus 53 ~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~-~~~~~G~~~-----------~~el~~~i~~i~~ 111 (113)
T cd02975 53 KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG-GIRYYGLPA-----------GYEFASLIEDIVR 111 (113)
T ss_pred ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc-eEEEEecCc-----------hHHHHHHHHHHHh
Confidence 344443 367888999999999999999998654311 457888643 4688888888764
No 51
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.50 E-value=0.003 Score=40.57 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=27.4
Q ss_pred hhHHHHHhCCcccceEEEEeC-CCCCceeEEEeecCC
Q 034203 18 SQDVARDFGAACTPEFFLFKK-DGRRPFQLVYHGQFD 53 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~-~G~~~v~~~Y~G~id 53 (101)
..+++++|++..+|+.+++++ +|+ ...++.|..+
T Consensus 61 ~~~~~~~~~i~~~Pti~~~~~~~g~--~~~~~~G~~~ 95 (104)
T cd02953 61 ITALLKRFGVFGPPTYLFYGPGGEP--EPLRLPGFLT 95 (104)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCC--CCcccccccC
Confidence 468999999999999999998 776 3456667653
No 52
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.42 E-value=0.0011 Score=41.65 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=24.8
Q ss_pred eeEEEeChhHHHHHhCCcccceEEEEeCCCC
Q 034203 11 WLITLFQSQDVARDFGAACTPEFFLFKKDGR 41 (101)
Q Consensus 11 fpvl~D~~~~vA~~yga~~tP~~fliD~~G~ 41 (101)
+|+-.|....+.+.|++..+|+.+|+|++|+
T Consensus 64 ~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 64 VPFDDDNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp EETTTHHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred EeeCcchHHHHHHHCCCCcCCEEEEECCCCC
Confidence 3434445789999999999999999999994
No 53
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.42 E-value=0.0063 Score=42.61 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=31.2
Q ss_pred cceeEEEeChhHHHHHhCCc-----------ccceEEEEeCCCCCceeEEEeecC
Q 034203 9 LMWLITLFQSQDVARDFGAA-----------CTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 9 l~fpvl~D~~~~vA~~yga~-----------~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
++||+|-|.+++++++||+. ..+.+|||| +| +++|.-.-
T Consensus 90 ~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g----~I~~~~~~ 139 (155)
T cd03013 90 DKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DG----KVKYLFVE 139 (155)
T ss_pred CcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CC----EEEEEEEe
Confidence 48999999999999999974 246789999 69 46666543
No 54
>PRK09381 trxA thioredoxin; Provisional
Probab=96.38 E-value=0.015 Score=37.48 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=37.4
Q ss_pred eeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 11 WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 11 fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
+.+=.|....++++|++..+|+.+++ ++|+ +..++.|..+ ...++..|+..|
T Consensus 57 ~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~i~~~~ 108 (109)
T PRK09381 57 AKLNIDQNPGTAPKYGIRGIPTLLLF-KNGE--VAATKVGALS-----------KGQLKEFLDANL 108 (109)
T ss_pred EEEECCCChhHHHhCCCCcCCEEEEE-eCCe--EEEEecCCCC-----------HHHHHHHHHHhc
Confidence 34556778899999999999999888 5785 3444556532 456777777655
No 55
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.38 E-value=0.008 Score=37.75 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=29.8
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
+=.|...+++++|++..+|+.++++ +|+ ...+|.|..
T Consensus 50 vd~~~~~~l~~~~~i~~~Pt~~~~~-~g~--~~~~~~g~~ 86 (96)
T cd02956 50 VNCDAQPQIAQQFGVQALPTVYLFA-AGQ--PVDGFQGAQ 86 (96)
T ss_pred EeccCCHHHHHHcCCCCCCEEEEEe-CCE--EeeeecCCC
Confidence 4467889999999999999999998 785 344677764
No 56
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.34 E-value=0.011 Score=45.32 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=36.9
Q ss_pred eeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 11 WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 11 fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
||... .++.++++||+..+|+.||+|++|+. +..+..|.++ ...|.+-|..+..
T Consensus 212 fp~~~-~d~~la~~~gV~~vPtl~Lv~~~~~~-v~~v~~G~~s-----------~~eL~~~i~~~a~ 265 (271)
T TIGR02740 212 FPNAR-PDAGQAQQLKIRTVPAVFLADPDPNQ-FTPIGFGVMS-----------ADELVDRILLAAH 265 (271)
T ss_pred CCccc-CCHHHHHHcCCCcCCeEEEEECCCCE-EEEEEeCCCC-----------HHHHHHHHHHHhc
Confidence 44442 34568999999999999999996531 3334556543 5678877776655
No 57
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.31 E-value=0.014 Score=39.91 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=38.6
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
|=.|...++|++||+...||.+++. +|+ .+.|.|..+ ...+...|++|+
T Consensus 71 VD~d~~~~La~~~~I~~iPTl~lfk-~G~---~v~~~G~~~-----------~~~l~~~l~~~~ 119 (120)
T cd03065 71 VDSKKDAKVAKKLGLDEEDSIYVFK-DDE---VIEYDGEFA-----------ADTLVEFLLDLI 119 (120)
T ss_pred EeCCCCHHHHHHcCCccccEEEEEE-CCE---EEEeeCCCC-----------HHHHHHHHHHHh
Confidence 4457889999999999999999996 686 455888743 467888888775
No 58
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.30 E-value=0.01 Score=37.01 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=35.2
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|....+++.|+++.+|+.+++++++. ...|.|.++ ...|...|++
T Consensus 55 ~~~~~~~~~~~~i~~~P~~~~~~~~~~---~~~~~g~~~-----------~~~l~~~i~~ 100 (102)
T TIGR01126 55 ATAEKDLASRFGVSGFPTIKFFPKGKK---PVDYEGGRD-----------LEAIVEFVNE 100 (102)
T ss_pred ccchHHHHHhCCCCcCCEEEEecCCCc---ceeecCCCC-----------HHHHHHHHHh
Confidence 457789999999999999999999884 567888643 3456666554
No 59
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.12 E-value=0.0068 Score=40.69 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.9
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.+.+++.||+..+|+++|||++|+ ++++..
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~----iv~~~~ 117 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGD----VVTTNA 117 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCC----EEchhH
Confidence 468899999999999999999995 555444
No 60
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.98 E-value=0.017 Score=37.91 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=33.6
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
|=.|....++++||+..+|+.++++ +|+ ....+.|..+ ...|.+.|+.
T Consensus 63 vd~d~~~~l~~~~~V~~~Pt~~i~~-~g~--~~~~~~G~~~-----------~~~l~~~i~~ 110 (111)
T cd02963 63 VNAGHERRLARKLGAHSVPAIVGII-NGQ--VTFYHDSSFT-----------KQHVVDFVRK 110 (111)
T ss_pred EeccccHHHHHHcCCccCCEEEEEE-CCE--EEEEecCCCC-----------HHHHHHHHhc
Confidence 3345778999999999999999996 785 3333455432 4567776654
No 61
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.96 E-value=0.024 Score=34.33 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=33.7
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
|=.|.+.+.+++||+..+|+.++ +| +.++.|..+ ...+++.|+.+|
T Consensus 37 vd~~~~~~~~~~~~v~~vPt~~~---~g----~~~~~G~~~-----------~~~l~~~l~~~~ 82 (82)
T TIGR00411 37 INVMENPQKAMEYGIMAVPAIVI---NG----DVEFIGAPT-----------KEELVEAIKKRL 82 (82)
T ss_pred EeCccCHHHHHHcCCccCCEEEE---CC----EEEEecCCC-----------HHHHHHHHHhhC
Confidence 33457889999999999999886 67 357778642 457777777653
No 62
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.85 E-value=0.028 Score=34.73 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=33.4
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
.|.+.+++++||+..+|+.++++ +|+ ...++.|..+ ...+.+.|++.
T Consensus 54 ~~~~~~~~~~~~v~~~P~~~~~~-~g~--~~~~~~g~~~-----------~~~l~~~l~~~ 100 (101)
T TIGR01068 54 VDENPDIAAKYGIRSIPTLLLFK-NGK--EVDRSVGALP-----------KAALKQLINKN 100 (101)
T ss_pred CCCCHHHHHHcCCCcCCEEEEEe-CCc--EeeeecCCCC-----------HHHHHHHHHhh
Confidence 45777899999999999999995 674 3344555532 45677777654
No 63
>PRK10996 thioredoxin 2; Provisional
Probab=95.77 E-value=0.028 Score=38.56 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=34.9
Q ss_pred EEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 14 TLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 14 l~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
=.|...+++++|+++.+|+.++++ +|+ +.-++.|.. +.+.+++.|+.+
T Consensus 91 d~~~~~~l~~~~~V~~~Ptlii~~-~G~--~v~~~~G~~-----------~~e~l~~~l~~~ 138 (139)
T PRK10996 91 NTEAERELSARFRIRSIPTIMIFK-NGQ--VVDMLNGAV-----------PKAPFDSWLNEA 138 (139)
T ss_pred eCCCCHHHHHhcCCCccCEEEEEE-CCE--EEEEEcCCC-----------CHHHHHHHHHHh
Confidence 356778999999999999988875 785 344456653 245777777664
No 64
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.26 E-value=0.06 Score=34.81 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=23.7
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.+++++|+++.+||.+++ ++|+ +..++.|.
T Consensus 61 ~~l~~~~~V~~~Pt~~~~-~~G~--~v~~~~G~ 90 (103)
T cd02985 61 MELCRREKIIEVPHFLFY-KDGE--KIHEEEGI 90 (103)
T ss_pred HHHHHHcCCCcCCEEEEE-eCCe--EEEEEeCC
Confidence 379999999999995555 8896 55667776
No 65
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=95.26 E-value=0.03 Score=35.10 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=28.6
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
.|....++++|++..+|+.+++ ++|+ ...+|.|..+
T Consensus 59 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~~~ 94 (102)
T cd03005 59 CTQHRELCSEFQVRGYPTLLLF-KDGE--KVDKYKGTRD 94 (102)
T ss_pred CCCChhhHhhcCCCcCCEEEEE-eCCC--eeeEeeCCCC
Confidence 3566789999999999999999 4675 3567888754
No 66
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=95.20 E-value=0.068 Score=33.79 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.3
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
.|....++++|+++..|+.+++ ++|+ ..+|.|..
T Consensus 57 ~~~~~~~~~~~~i~~~Pt~~~~-~~g~---~~~~~G~~ 90 (101)
T cd02994 57 VTQEPGLSGRFFVTALPTIYHA-KDGV---FRRYQGPR 90 (101)
T ss_pred ccCCHhHHHHcCCcccCEEEEe-CCCC---EEEecCCC
Confidence 4667789999999999999987 7785 36777753
No 67
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.17 E-value=0.095 Score=36.64 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=41.2
Q ss_pred eEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 12 pvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
-|=.|...++|.+||+..+|+.+++.. |+ ..-+..|..+ ...+.+.|+++|+...
T Consensus 74 kVDiD~~~~LA~~fgV~siPTLl~Fkd-Gk--~v~~i~G~~~-----------k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 74 IADLEQSEAIGDRFGVFRFPATLVFTG-GN--YRGVLNGIHP-----------WAELINLMRGLVEPQQ 128 (132)
T ss_pred EEECCCCHHHHHHcCCccCCEEEEEEC-CE--EEEEEeCcCC-----------HHHHHHHHHHHhcCcC
Confidence 355678999999999999998888874 64 3445556533 4688889999888653
No 68
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.16 E-value=0.048 Score=34.61 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=26.5
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.|.+.+++++|++..+|+.++++ +|+ +.-++.|.
T Consensus 53 ~d~~~~l~~~~~v~~vPt~~i~~-~g~--~v~~~~g~ 86 (97)
T cd02949 53 IDEDQEIAEAAGIMGTPTVQFFK-DKE--LVKEISGV 86 (97)
T ss_pred CCCCHHHHHHCCCeeccEEEEEE-CCe--EEEEEeCC
Confidence 34677899999999999999996 685 44456664
No 69
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.031 Score=40.86 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=27.4
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
.++|+.|+|+.|||.+++|++|++ .+.--|.++
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~--Il~lPGY~p 137 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKT--ILELPGYMP 137 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCE--EEecCCCCC
Confidence 489999999999999999999972 455567665
No 70
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.00 E-value=0.064 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=28.4
Q ss_pred hcccceeEE-EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 6 YLFLMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 6 ~~~l~fpvl-~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
+..+.|-.+ .|..++++++||+..+|+.++ +| +++|.|+
T Consensus 28 ~~~i~~~~id~~~~~~l~~~~~i~~vPti~i---~~----~~~~~g~ 67 (67)
T cd02973 28 NPNISAEMIDAAEFPDLADEYGVMSVPAIVI---NG----KVEFVGR 67 (67)
T ss_pred CCceEEEEEEcccCHhHHHHcCCcccCEEEE---CC----EEEEecC
Confidence 334666544 456688999999999999866 45 5888875
No 71
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.99 E-value=0.12 Score=33.86 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=28.6
Q ss_pred ChhHHHHHhCCcccceEEEEeC-CCCCceeEEEeecCC
Q 034203 17 QSQDVARDFGAACTPEFFLFKK-DGRRPFQLVYHGQFD 53 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fliD~-~G~~~v~~~Y~G~id 53 (101)
+..++++.|++..+|+.++||+ +|+ +..+..|.++
T Consensus 64 e~~~~~~~~~~~~~P~~~~i~~~~g~--~l~~~~G~~~ 99 (114)
T cd02958 64 EGQRFLQSYKVDKYPHIAIIDPRTGE--VLKVWSGNIT 99 (114)
T ss_pred cHHHHHHHhCccCCCeEEEEeCccCc--EeEEEcCCCC
Confidence 4558999999999999999999 786 4556777764
No 72
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=94.87 E-value=0.069 Score=34.39 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=29.5
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..+++++|+++.+|+.+++ ++|+ ..-+..|. +..+++++|++|
T Consensus 60 ~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~------------~~~~~~~~i~~~ 102 (102)
T cd02948 60 TIDTLKRYRGKCEPTFLFY-KNGE--LVAVIRGA------------NAPLLNKTITEL 102 (102)
T ss_pred CHHHHHHcCCCcCcEEEEE-ECCE--EEEEEecC------------ChHHHHHHHhhC
Confidence 6789999999999975555 5785 23334442 246788888754
No 73
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=94.76 E-value=0.077 Score=38.58 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=25.4
Q ss_pred EEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 33 FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 33 ~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
-||||++|+ ++.+|...+.. ....++.+|+++|+
T Consensus 149 KFLv~~~G~--vv~r~~~~~~p---------~~~~i~~~i~~~l~ 182 (183)
T PRK10606 149 KFLVGRDGQ--VIQRFSPDMTP---------EDPIVMESIKLALA 182 (183)
T ss_pred EEEECCCCc--EEEEECCCCCC---------CHHHHHHHHHHHhc
Confidence 899999997 55666655331 35679999999984
No 74
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.74 E-value=0.11 Score=32.29 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=34.2
Q ss_pred eChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
|....++++|++..+|+.+++..... ..+|.|..+ ...|.+.|+.
T Consensus 58 ~~~~~l~~~~~v~~~Pt~~~~~~g~~---~~~~~g~~~-----------~~~l~~~i~~ 102 (103)
T PF00085_consen 58 DENKELCKKYGVKSVPTIIFFKNGKE---VKRYNGPRN-----------AESLIEFIEK 102 (103)
T ss_dssp TTSHHHHHHTTCSSSSEEEEEETTEE---EEEEESSSS-----------HHHHHHHHHH
T ss_pred hccchhhhccCCCCCCEEEEEECCcE---EEEEECCCC-----------HHHHHHHHHc
Confidence 45668999999999999999976553 457888743 5677777764
No 75
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=94.56 E-value=0.11 Score=33.66 Aligned_cols=44 Identities=16% Similarity=0.384 Sum_probs=32.4
Q ss_pred hhcccceeEEEeC---hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 5 LYLFLMWLITLFQ---SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 5 ~~~~l~fpvl~D~---~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
.|..+.|-- .|. ...++++|+++..||.+++++. . ..+|.|..+
T Consensus 46 ~~~~~~~~~-vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~---~~~~~G~~~ 92 (100)
T cd02999 46 MFPQIRHLA-IEESSIKPSLLSRYGVVGFPTILLFNST-P---RVRYNGTRT 92 (100)
T ss_pred HhccCceEE-EECCCCCHHHHHhcCCeecCEEEEEcCC-c---eeEecCCCC
Confidence 344555533 353 4789999999999999999865 4 688998743
No 76
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=94.49 E-value=0.1 Score=37.77 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=42.9
Q ss_pred ccccee-EEEeChhHHHHHhCCc-ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 7 LFLMWL-ITLFQSQDVARDFGAA-CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 7 ~~l~fp-vl~D~~~~vA~~yga~-~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
+.+++. ++.|.+|.+.++++.. ..=..+|+|++|+ |+.+..|+++ ..++++.|+-+
T Consensus 100 k~~p~s~~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~--V~F~k~G~Ls-----------~~Ev~qVi~Ll 157 (160)
T PF09695_consen 100 KEFPWSQFVLDSNGVVRKAWQLQEESSAIIVLDKQGK--VQFVKEGALS-----------PAEVQQVIALL 157 (160)
T ss_pred hhCCCcEEEEcCCCceeccccCCCCCceEEEEcCCcc--EEEEECCCCC-----------HHHHHHHHHHH
Confidence 346666 6899999999999944 6678999999997 6666777765 45777776643
No 77
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=94.40 E-value=0.059 Score=32.82 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=28.6
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
.|....+++.|++..+|+.++++++|+ ...+|.|..
T Consensus 57 ~~~~~~~~~~~~i~~~Pt~~~~~~~~~--~~~~~~g~~ 92 (101)
T cd02961 57 CTANNDLCSEYGVRGYPTIKLFPNGSK--EPVKYEGPR 92 (101)
T ss_pred ccchHHHHHhCCCCCCCEEEEEcCCCc--ccccCCCCc
Confidence 455679999999999999999998853 356677763
No 78
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=94.22 E-value=0.18 Score=35.58 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=44.0
Q ss_pred eeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 11 WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 11 fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
+-|=.|+.+++|+.|+++..|+++++=++|. ..+.+|.-++.. -+....+.+.|.+.|+.++.|
T Consensus 59 ~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~---~~vd~~tG~~~k-~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 59 YLVDITEVPDFNTMYELYDPCTVMFFFRNKH---IMIDLGTGNNNK-INWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred EEEECCCCHHHHHHcCccCCCcEEEEEECCe---EEEEEecccccc-cccccCCHHHHHHHHHHHHHH
Confidence 3444567889999999998888886667784 366666543321 112234678899999888876
No 79
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=94.15 E-value=0.059 Score=34.32 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=25.9
Q ss_pred hhHHHHHhCCcccceEEEEeCCCC--CceeEEEeecC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGR--RPFQLVYHGQF 52 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~--~~v~~~Y~G~i 52 (101)
..+++++|++..+|+.+++++.+. +.....|.|..
T Consensus 63 ~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~ 99 (109)
T cd03002 63 NKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGER 99 (109)
T ss_pred cHHHHHHcCCCcCCEEEEEeCCCcccccccccccCcc
Confidence 668999999999999999998862 00134566653
No 80
>PTZ00051 thioredoxin; Provisional
Probab=93.81 E-value=0.091 Score=32.85 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=26.3
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.|....++++|++..+|+.+++ ++|+ +.-++.|.
T Consensus 57 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~ 90 (98)
T PTZ00051 57 VDELSEVAEKENITSMPTFKVF-KNGS--VVDTLLGA 90 (98)
T ss_pred CcchHHHHHHCCCceeeEEEEE-eCCe--EEEEEeCC
Confidence 3456789999999999986555 6886 45678886
No 81
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=93.78 E-value=0.24 Score=36.18 Aligned_cols=47 Identities=19% Similarity=0.408 Sum_probs=34.0
Q ss_pred ChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
...++++.|++..+|+..+++. |+. +..+|.|... .+++...|+.++
T Consensus 65 ~~~~l~~~~~V~~~Pt~~~f~~-g~~-~~~~~~G~~~-----------~~~l~~~i~~~~ 111 (215)
T TIGR02187 65 EDKEEAEKYGVERVPTTIILEE-GKD-GGIRYTGIPA-----------GYEFAALIEDIV 111 (215)
T ss_pred ccHHHHHHcCCCccCEEEEEeC-Cee-eEEEEeecCC-----------HHHHHHHHHHHH
Confidence 7899999999999999999885 541 1247888643 345666666654
No 82
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.63 E-value=0.11 Score=33.03 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=30.0
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
+=.|...++++.|++...|+.+++++.|+ ...+|.|..
T Consensus 57 vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~--~~~~~~G~~ 94 (104)
T cd03004 57 VDCQKYESLCQQANIRAYPTIRLYPGNAS--KYHSYNGWH 94 (104)
T ss_pred EECCchHHHHHHcCCCcccEEEEEcCCCC--CceEccCCC
Confidence 33467788999999999999999988744 357788864
No 83
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.17 Score=36.22 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=42.2
Q ss_pred eeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 11 WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 11 fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
|-|=.|+..++|..|++...|++++++. |+ .+-++.|..+ .+.|+..|+..|.
T Consensus 97 ~kvdtD~~~ela~~Y~I~avPtvlvfkn-Ge--~~d~~vG~~~-----------~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 97 YKVDTDEHPELAEDYEISAVPTVLVFKN-GE--KVDRFVGAVP-----------KEQLRSLIKKFLK 149 (150)
T ss_pred EEEccccccchHhhcceeeeeEEEEEEC-CE--EeeeecccCC-----------HHHHHHHHHHHhc
Confidence 4566789999999999999999999985 64 2446777754 5789999988774
No 84
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=93.57 E-value=0.072 Score=33.81 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=27.2
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
|=.|....++++|+++..|+.+++ ++|+ ...+|.|.
T Consensus 56 vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~ 91 (101)
T cd03003 56 VNCGDDRMLCRSQGVNSYPSLYVF-PSGM--NPEKYYGD 91 (101)
T ss_pred EeCCccHHHHHHcCCCccCEEEEE-cCCC--CcccCCCC
Confidence 334567899999999999999999 5675 23456664
No 85
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=93.50 E-value=0.24 Score=31.69 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=25.5
Q ss_pred eChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
|...++++.|++...|+.++++ +|. ..+|.|.
T Consensus 59 ~~~~~~~~~~~I~~~Pt~~l~~-~~~---~~~~~G~ 90 (104)
T cd03000 59 TAYSSIASEFGVRGYPTIKLLK-GDL---AYNYRGP 90 (104)
T ss_pred ccCHhHHhhcCCccccEEEEEc-CCC---ceeecCC
Confidence 4567999999999999999995 343 4667775
No 86
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=93.10 E-value=0.16 Score=31.76 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=25.0
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
...++++||+..+|+.+++. +|+ +..+|.|..+
T Consensus 64 ~~~~~~~~~i~~~Pt~~~~~-~g~--~~~~~~g~~~ 96 (104)
T cd02997 64 HDALKEEYNVKGFPTFKYFE-NGK--FVEKYEGERT 96 (104)
T ss_pred cHHHHHhCCCccccEEEEEe-CCC--eeEEeCCCCC
Confidence 67899999999999866665 675 4566777653
No 87
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=93.05 E-value=0.11 Score=32.46 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=26.5
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
...+++.|++..+|+.+++++.|+ ....|.|..
T Consensus 64 ~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~~g~~ 96 (105)
T cd02998 64 NKDLAKKYGVSGFPTLKFFPKGST--EPVKYEGGR 96 (105)
T ss_pred chhhHHhCCCCCcCEEEEEeCCCC--CccccCCcc
Confidence 578999999999999999998764 245566653
No 88
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=93.02 E-value=0.15 Score=31.93 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=28.0
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
.|...+++++|+++.+|+.+++++..+ ....|.|..
T Consensus 58 ~~~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~~g~~ 93 (103)
T cd03001 58 ADVHQSLAQQYGVRGFPTIKVFGAGKN--SPQDYQGGR 93 (103)
T ss_pred CcchHHHHHHCCCCccCEEEEECCCCc--ceeecCCCC
Confidence 467788999999999999999986522 246677764
No 89
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=93.02 E-value=0.16 Score=42.69 Aligned_cols=45 Identities=11% Similarity=0.264 Sum_probs=33.4
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCce--eEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPF--QLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v--~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
.++++++|++..+|+.+++|++|+ . ..++.|.++ .+.+.+.++++
T Consensus 523 ~~~l~~~~~v~g~Pt~~~~~~~G~--~i~~~r~~G~~~-----------~~~f~~~L~~~ 569 (571)
T PRK00293 523 DVALLKHYNVLGLPTILFFDAQGQ--EIPDARVTGFMD-----------AAAFAAHLRQL 569 (571)
T ss_pred hHHHHHHcCCCCCCEEEEECCCCC--CcccccccCCCC-----------HHHHHHHHHHh
Confidence 468999999999999999999996 1 134556543 45677777664
No 90
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=92.85 E-value=0.3 Score=34.50 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=36.6
Q ss_pred EEEeChhHHHHHhCCcc------cceEEEEeCCCCCceeEEEeecCCCCCCC-CCCCCcHHHHHHH
Q 034203 13 ITLFQSQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDSRPS-NNLPVTGRDIRLA 71 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~------tP~~fliD~~G~~~v~~~Y~G~idd~~~~-~~~~~~~~~L~~A 71 (101)
|=.|...+++++|++.. +||.+++. +|+ ..-++.|. ++.++. .+.-.+.+.+..+
T Consensus 86 VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~-~Gk--~v~r~~G~-~~~~~~~~~~~~~~~~~~~~ 147 (152)
T cd02962 86 IDIGRFPNVAEKFRVSTSPLSKQLPTIILFQ-GGK--EVARRPYY-NDSKGRAVPFTFSKENVIRH 147 (152)
T ss_pred EECCCCHHHHHHcCceecCCcCCCCEEEEEE-CCE--EEEEEecc-ccCccccccccccHHHHHHh
Confidence 33467889999999988 99998886 675 45678885 555443 2233444444443
No 91
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.6 Score=34.92 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=44.0
Q ss_pred cceeEEEeChhHHHHHhCCc------------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 9 LMWLITLFQSQDVARDFGAA------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 9 l~fpvl~D~~~~vA~~yga~------------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
++||++-|+..++|-.|+.- +.-.+||||++-+ +++.+-=.-.-.+ ...++-.+|++|.
T Consensus 98 ~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkK--irLs~lYP~ttGR-------N~dEiLRvidsLq 168 (224)
T KOG0854|consen 98 VPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKK--IRLSFLYPSTTGR-------NFDEILRVIDSLQ 168 (224)
T ss_pred CCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCce--EEEEEEcccccCc-------CHHHHHHHHHHHh
Confidence 88999999999999888732 2567899999997 6665432222211 2567778888876
Q ss_pred cCC
Q 034203 77 SGQ 79 (101)
Q Consensus 77 ag~ 79 (101)
-..
T Consensus 169 lt~ 171 (224)
T KOG0854|consen 169 LTD 171 (224)
T ss_pred hhc
Confidence 543
No 92
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=92.51 E-value=0.37 Score=35.13 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=32.6
Q ss_pred EEEeChhHHHH-HhCCc-ccceEEEEeCCCCCceeEEEeecCCC
Q 034203 13 ITLFQSQDVAR-DFGAA-CTPEFFLFKKDGRRPFQLVYHGQFDD 54 (101)
Q Consensus 13 vl~D~~~~vA~-~yga~-~tP~~fliD~~G~~~v~~~Y~G~idd 54 (101)
+++|..| +|+ +++.. ..-..+|+|++|+ ++.+..|++++
T Consensus 129 ~vlD~~g-vak~AWqL~e~~SaivVlDk~G~--VkfvkeGaLt~ 169 (184)
T COG3054 129 FVLDSNG-VAKNAWQLKEESSAVVVLDKDGR--VKFVKEGALTQ 169 (184)
T ss_pred eEEccch-hhhhhhccccccceEEEEcCCCc--EEEEecCCccH
Confidence 7899999 666 99965 6778899999998 88888898764
No 93
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.42 E-value=0.52 Score=27.79 Aligned_cols=41 Identities=20% Similarity=0.462 Sum_probs=28.8
Q ss_pred cccee-EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 8 ~l~fp-vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.+.|- +=.|...++++.|++..+|+.+++++ |+ +...|.|.
T Consensus 41 ~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~-g~--~~~~~~g~ 82 (93)
T cd02947 41 KVKFVKVDVDENPELAEEYGVRSIPTFLFFKN-GK--EVDRVVGA 82 (93)
T ss_pred CceEEEEECCCChhHHHhcCcccccEEEEEEC-CE--EEEEEecC
Confidence 34443 33445688999999999999999975 43 35556665
No 94
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.61 Score=31.08 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=34.4
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
|=.|+.+++|+.|++..+||+.++ ++|+ .+..+.|+ + ...+++.|++
T Consensus 58 vdvde~~~~~~~~~V~~~PTf~f~-k~g~--~~~~~vGa-~-----------~~~l~~~i~~ 104 (106)
T KOG0907|consen 58 VDVDELEEVAKEFNVKAMPTFVFY-KGGE--EVDEVVGA-N-----------KAELEKKIAK 104 (106)
T ss_pred EecccCHhHHHhcCceEeeEEEEE-ECCE--EEEEEecC-C-----------HHHHHHHHHh
Confidence 444556999999999999999999 5675 35667777 2 3467766654
No 95
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=92.10 E-value=0.26 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=25.0
Q ss_pred eChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
|...++++.|++..+|+.++++ +|+ +..++.|.
T Consensus 55 ~~~~~~~~~~~i~~~Pt~~~~~-~g~--~~~~~~g~ 87 (97)
T cd02984 55 EELPEISEKFEITAVPTFVFFR-NGT--IVDRVSGA 87 (97)
T ss_pred ccCHHHHHhcCCccccEEEEEE-CCE--EEEEEeCC
Confidence 4567899999999999988886 685 33445554
No 96
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=91.42 E-value=0.96 Score=34.63 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=38.9
Q ss_pred cceeEEEeC-hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 9 LMWLITLFQ-SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 9 l~fpvl~D~-~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..+|++.|. +....++|||. |+-+.|=++| ++.|.|....-.+ ..+++++.+++
T Consensus 181 ~~~pi~vD~mdN~~~~~YgA~--PeRlyIi~~g----kv~Y~Gg~GP~~y------~~~e~r~~L~~ 235 (237)
T PF00837_consen 181 PQCPIVVDTMDNNFNKAYGAL--PERLYIIQDG----KVVYKGGPGPFGY------SPEELREWLEK 235 (237)
T ss_pred CCCCEEEEccCCHHHHHhCCC--cceEEEEECC----EEEEeCCCCCCcC------CHHHHHHHHHh
Confidence 568999995 55677999985 6655444689 6999999654322 35788887775
No 97
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=91.31 E-value=0.5 Score=32.03 Aligned_cols=39 Identities=33% Similarity=0.566 Sum_probs=30.1
Q ss_pred eEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 12 pvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
-|=.|...++|.+|+++..||.+++. +|+ ..-...|.++
T Consensus 66 kVdid~~~~la~~f~V~sIPTli~fk-dGk--~v~~~~G~~~ 104 (111)
T cd02965 66 VVGRADEQALAARFGVLRTPALLFFR-DGR--YVGVLAGIRD 104 (111)
T ss_pred EEECCCCHHHHHHcCCCcCCEEEEEE-CCE--EEEEEeCccC
Confidence 46667889999999999999888887 475 3456677643
No 98
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=0.94 Score=33.64 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=34.9
Q ss_pred cccceeEEEeChhHHHHHhCCcccc-------eEEEEeCCCCCceeEEEeecC
Q 034203 7 LFLMWLITLFQSQDVARDFGAACTP-------EFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~~tP-------~~fliD~~G~~~v~~~Y~G~i 52 (101)
-.|+|..|-|+.+++-+.+||..+| ..||+|+.|. ..+.|.-.|
T Consensus 145 qnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~--k~~ik~~~i 195 (211)
T KOG0855|consen 145 QNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV--KQLIKNNQI 195 (211)
T ss_pred ccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe--EEEEEeccc
Confidence 3688999999999999999999876 6899999884 234454443
No 99
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=90.89 E-value=0.33 Score=31.07 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=29.7
Q ss_pred hhhcccceeEEE-eChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 4 ELYLFLMWLITL-FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 4 ~~~~~l~fpvl~-D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
+.+-.++|-+.- |...++|+.||+..+|++++ +| ++++.|+.
T Consensus 39 ~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi---dG----~~~~~G~~ 81 (89)
T cd03026 39 VLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL---NG----ELFGFGRM 81 (89)
T ss_pred HHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE---CC----EEEEeCCC
Confidence 334456654443 35567999999999999975 58 58888853
No 100
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=90.74 E-value=2 Score=28.26 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=31.8
Q ss_pred hcccce-eEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 6 YLFLMW-LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 6 ~~~l~f-pvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
|..+.| -|=.|...+++++|++..+|+..++. +|+ ..-++.|.-+
T Consensus 51 ~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk-~G~--~v~~~~g~~~ 96 (113)
T cd02989 51 HLETKFIKVNAEKAPFLVEKLNIKVLPTVILFK-NGK--TVDRIVGFEE 96 (113)
T ss_pred cCCCEEEEEEcccCHHHHHHCCCccCCEEEEEE-CCE--EEEEEECccc
Confidence 444554 35566777899999999999998887 574 3446777643
No 101
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.60 E-value=0.88 Score=27.90 Aligned_cols=39 Identities=15% Similarity=0.501 Sum_probs=25.9
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHH
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~ 73 (101)
+..-..+||+..+|+. +|| | +++|.|++- +...++..|+
T Consensus 38 ~~~~~~~ygv~~vPal-vIn--g----~~~~~G~~p----------~~~el~~~l~ 76 (76)
T PF13192_consen 38 DFEEIEKYGVMSVPAL-VIN--G----KVVFVGRVP----------SKEELKELLE 76 (76)
T ss_dssp THHHHHHTT-SSSSEE-EET--T----EEEEESS------------HHHHHHHHHH
T ss_pred CHHHHHHcCCCCCCEE-EEC--C----EEEEEecCC----------CHHHHHHHhC
Confidence 3333499999999999 555 7 699999742 3566666553
No 102
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=90.59 E-value=1.2 Score=29.03 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=37.7
Q ss_pred hcccceeEEEeChh-HHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHH
Q 034203 6 YLFLMWLITLFQSQ-DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAI 72 (101)
Q Consensus 6 ~~~l~fpvl~D~~~-~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI 72 (101)
|..+.|. -.|.+. .++++|++..+|+.+++. +|+ ..-++.|..+.. +...+...|++++
T Consensus 53 ~~~v~f~-~vd~~~~~l~~~~~i~~~Pt~~~f~-~G~--~v~~~~G~~~~~----~~~~~~~~l~~~l 112 (113)
T cd02957 53 YPETKFV-KINAEKAFLVNYLDIKVLPTLLVYK-NGE--LIDNIVGFEELG----GDDFTTEDLEKFL 112 (113)
T ss_pred CCCcEEE-EEEchhhHHHHhcCCCcCCEEEEEE-CCE--EEEEEecHHHhC----CCCCCHHHHHHHh
Confidence 4445543 344433 999999999999887776 575 455677865432 1344566776654
No 103
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=90.41 E-value=1.2 Score=33.51 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=33.0
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
.|...+++++|+++..|+.++++ +|+ ...|.+... +.+.+.+-++..+.
T Consensus 92 ~~~~~~l~~~~~I~~~PTl~~f~-~G~---~v~~~~G~~----------s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 92 ATRALNLAKRFAIKGYPTLLLFD-KGK---MYQYEGGDR----------STEKLAAFALGDFK 140 (224)
T ss_pred CcccHHHHHHcCCCcCCEEEEEE-CCE---EEEeeCCCC----------CHHHHHHHHHHHHH
Confidence 35677899999999999999999 574 344443211 24556666555543
No 104
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=90.28 E-value=0.52 Score=35.66 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=27.2
Q ss_pred eChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
+.+.++++++|++.||+.|+.|.+|+ .....|..
T Consensus 206 ~~n~~l~~~lGv~GTPaiv~~d~~G~---~~~v~G~~ 239 (251)
T PRK11657 206 ADNQKLMDDLGANATPAIYYMDKDGT---LQQVVGLP 239 (251)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCC---EEEecCCC
Confidence 45667899999999999999999994 33566764
No 105
>PF13728 TraF: F plasmid transfer operon protein
Probab=90.26 E-value=0.69 Score=34.32 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=32.5
Q ss_pred eeEEEeC-----------hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 11 WLITLFQ-----------SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 11 fpvl~D~-----------~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
+||=.|. +..++++||+..||+.||+++++.. +..+-.|.++
T Consensus 154 ~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~-~~pv~~G~~s 206 (215)
T PF13728_consen 154 IPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK-WYPVSQGFMS 206 (215)
T ss_pred EEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe-EEEEeeecCC
Confidence 6677773 4778999999999999999998842 4555666654
No 106
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=0.63 Score=33.74 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=24.8
Q ss_pred eEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 32 EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 32 ~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
|-||||++|+ |+-||.-.. +..+++.+|+++|+.
T Consensus 129 tKFLvdr~G~--VV~Rf~p~t-----------~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 129 TKFLVDRDGN--VVKRFSPKT-----------KPEDIELAIEKLLAE 162 (162)
T ss_pred EEEEEcCCCc--EEEeeCCCC-----------ChhhHHHHHHHHhcC
Confidence 6799999997 655554331 245788899999873
No 107
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=89.77 E-value=0.47 Score=30.40 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=29.6
Q ss_pred ccee-EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 9 LMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 9 l~fp-vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
+.|- |=.|...+++++||++..|+.+++ ++|+. ....|.|.
T Consensus 57 ~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~-~~g~~-~~~~~~g~ 98 (108)
T cd02996 57 VVWGKVDCDKESDIADRYRINKYPTLKLF-RNGMM-MKREYRGQ 98 (108)
T ss_pred EEEEEEECCCCHHHHHhCCCCcCCEEEEE-eCCcC-cceecCCC
Confidence 4543 336788899999999999999999 56741 12556664
No 108
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=89.72 E-value=1.5 Score=29.69 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=42.3
Q ss_pred eeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 11 WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 11 fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
+-|=.|+..+++++||+...||.+++. +|+ ..-+..|..|.... +....+...+-+.|+.+
T Consensus 50 ~kVDvD~~~~la~~~~V~~iPTf~~fk-~G~--~v~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 50 YLVDIDEVPDFNKMYELYDPPTVMFFF-RNK--HMKIDLGTGNNNKI-NWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEEECCCCHHHHHHcCCCCCCEEEEEE-CCE--EEEEEcCCCCCceE-EEecCcHHHHHHHHHHH
Confidence 456678999999999999999988888 475 45667788776433 22223455666655543
No 109
>PTZ00102 disulphide isomerase; Provisional
Probab=89.43 E-value=0.85 Score=36.33 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=37.9
Q ss_pred eChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
|.+...++.|+++.+|+.+++++.++ +..+|.|..+ ...+.+-|++....
T Consensus 418 ~~~~~~~~~~~v~~~Pt~~~~~~~~~--~~~~~~G~~~-----------~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 418 TANETPLEEFSWSAFPTILFVKAGER--TPIPYEGERT-----------VEGFKEFVNKHATN 467 (477)
T ss_pred CCCccchhcCCCcccCeEEEEECCCc--ceeEecCcCC-----------HHHHHHHHHHcCCC
Confidence 44566789999999999999998775 3457888743 46778878776654
No 110
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=0.43 Score=35.42 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.1
Q ss_pred ccceeEEEeChhHHHHHhCCcc------cceEEEEeCCCC
Q 034203 8 FLMWLITLFQSQDVARDFGAAC------TPEFFLFKKDGR 41 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~------tP~~fliD~~G~ 41 (101)
.+.+|+|.|.+.++++.||+-. .--.|+||++|.
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi 135 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGI 135 (196)
T ss_pred ccccceeeccchhhHHhcCceecCCCcceeeeEEEccccc
Confidence 4669999999999999999753 566899999993
No 111
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=88.70 E-value=1.5 Score=28.88 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.4
Q ss_pred eChhHHHHHhCCcccceEEEEeCCC
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDG 40 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G 40 (101)
|...++++.|+++.+|+.+++.+..
T Consensus 65 ~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 65 EENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred hhhHHHHHhCCCCCCCEEEEECCCC
Confidence 3467899999999999999997765
No 112
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=88.55 E-value=3.7 Score=25.08 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=25.0
Q ss_pred ceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 10 ~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
.+.+..-.+...+.+||+..+|+.++ +| ++.+.|.+
T Consensus 30 ~~~~~~v~~~~~a~~~~v~~vPti~i---~G----~~~~~G~~ 65 (76)
T TIGR00412 30 DAEFEKVTDMNEILEAGVTATPGVAV---DG----ELVIMGKI 65 (76)
T ss_pred CeEEEEeCCHHHHHHcCCCcCCEEEE---CC----EEEEEecc
Confidence 34433333455688899999998888 78 45688873
No 113
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=88.39 E-value=4.7 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=22.5
Q ss_pred eeEEEeCh--hHHHH--------HhCCcccceEEEEeCCCC
Q 034203 11 WLITLFQS--QDVAR--------DFGAACTPEFFLFKKDGR 41 (101)
Q Consensus 11 fpvl~D~~--~~vA~--------~yga~~tP~~fliD~~G~ 41 (101)
.+|-.|.+ .++++ .||+..+|+.+++|++|+
T Consensus 52 v~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 52 VPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred EEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 35666643 34444 258899999999999995
No 114
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=88.36 E-value=0.77 Score=30.63 Aligned_cols=30 Identities=13% Similarity=0.407 Sum_probs=22.8
Q ss_pred eEEEeChh-HHHHHhCCcc--cceEEEEeCCCC
Q 034203 12 LITLFQSQ-DVARDFGAAC--TPEFFLFKKDGR 41 (101)
Q Consensus 12 pvl~D~~~-~vA~~yga~~--tP~~fliD~~G~ 41 (101)
.+-.|.+. ...++|+... +|+.+++|++|+
T Consensus 56 ~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 56 MVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred EEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 34555543 4568898875 999999999996
No 115
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=87.63 E-value=0.8 Score=30.65 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=26.4
Q ss_pred eChhHHH-HHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 16 FQSQDVA-RDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 16 D~~~~vA-~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
|....++ +.|++...||..++ ++|+ ...+|.|..+
T Consensus 70 d~~~~l~~~~~~I~~~PTl~lf-~~g~--~~~~y~G~~~ 105 (113)
T cd03006 70 WWPQGKCRKQKHFFYFPVIHLY-YRSR--GPIEYKGPMR 105 (113)
T ss_pred CCChHHHHHhcCCcccCEEEEE-ECCc--cceEEeCCCC
Confidence 3455677 58999999999999 5675 2578888743
No 116
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=85.46 E-value=2.2 Score=26.38 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=25.2
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
..+++..+++..+|+.+++.+.++. -..+|.|..
T Consensus 62 ~~~~~~~~~~~~~Pt~~~~~~~~~~-~~~~~~g~~ 95 (104)
T cd02995 62 ANDVPSEFVVDGFPTILFFPAGDKS-NPIKYEGDR 95 (104)
T ss_pred chhhhhhccCCCCCEEEEEcCCCcC-CceEccCCc
Confidence 3468889999999999999876621 146677764
No 117
>smart00594 UAS UAS domain.
Probab=85.32 E-value=1 Score=29.99 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=22.5
Q ss_pred eChhHHHHHhCCcccceEEEEeCCC
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDG 40 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G 40 (101)
++..++++.|++...|+..++|++|
T Consensus 73 ~eg~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 73 SEGQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hhHHHHHHhcCcCCCCEEEEEecCC
Confidence 3567899999999999999999998
No 118
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=85.26 E-value=1.1 Score=28.96 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=23.7
Q ss_pred hHHHH-HhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 19 QDVAR-DFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 19 ~~vA~-~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
..+++ .|+++..|+.+++++++. ....|.|.
T Consensus 67 ~~~~~~~~~v~~~Pti~~f~~~~~--~~~~y~g~ 98 (109)
T cd02993 67 REFAKEELQLKSFPTILFFPKNSR--QPIKYPSE 98 (109)
T ss_pred hhhHHhhcCCCcCCEEEEEcCCCC--CceeccCC
Confidence 45665 599999999999998764 24667774
No 119
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=84.99 E-value=4.5 Score=31.12 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=34.7
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
...|+.+|+..||+.||++++.++ +.-+=.|.+ +..+|.+-|..++.+
T Consensus 203 ~gqa~~l~v~~~Pal~Lv~~~t~~-~~pv~~G~i-----------S~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 203 SGQAQHLGVKYFPALYLVNPKSQK-MSPLAYGFI-----------SQDELKERILNVLTQ 250 (256)
T ss_pred hHHHHhcCCccCceEEEEECCCCc-EEEEeeccC-----------CHHHHHHHHHHHHhc
Confidence 447999999999999999999642 233334443 467887777777665
No 120
>PTZ00102 disulphide isomerase; Provisional
Probab=83.83 E-value=3.6 Score=32.71 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=36.4
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
.+...+++++|++...|+.++++..+ .+.|.|..+ ...+.+-++.++.
T Consensus 92 ~~~~~~l~~~~~i~~~Pt~~~~~~g~----~~~y~g~~~-----------~~~l~~~l~~~~~ 139 (477)
T PTZ00102 92 ATEEMELAQEFGVRGYPTIKFFNKGN----PVNYSGGRT-----------ADGIVSWIKKLTG 139 (477)
T ss_pred CCCCHHHHHhcCCCcccEEEEEECCc----eEEecCCCC-----------HHHHHHHHHHhhC
Confidence 45788999999999999999999765 358888632 3566666666554
No 121
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=82.41 E-value=1.8 Score=29.06 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=26.1
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCC-ceeEEEeecCC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRR-PFQLVYHGQFD 53 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~-~v~~~Y~G~id 53 (101)
..++|+++++...|...+|+.+.++ .+..+..|.++
T Consensus 65 g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~ 101 (116)
T cd02991 65 GYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQ 101 (116)
T ss_pred HHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCC
Confidence 4779999999999999999654432 14456677653
No 122
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=81.91 E-value=3.9 Score=32.03 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=27.4
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCce-eEEEeecCC
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPF-QLVYHGQFD 53 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v-~~~Y~G~id 53 (101)
.|...++++.|++..+|+.+++. +|+ . ...|.|..+
T Consensus 61 ~~~~~~l~~~~~i~~~Pt~~~~~-~g~--~~~~~~~g~~~ 97 (462)
T TIGR01130 61 ATEEKDLAQKYGVSGYPTLKIFR-NGE--DSVSDYNGPRD 97 (462)
T ss_pred CCCcHHHHHhCCCccccEEEEEe-CCc--cceeEecCCCC
Confidence 44667899999999999988886 454 2 367888643
No 123
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=81.54 E-value=8.6 Score=29.46 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=35.8
Q ss_pred HHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 20 DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 20 ~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
..+..+|+..+|..||++++.++ +.-+=.|.+ +..+|.+-|..++.+-.
T Consensus 197 gqa~~l~v~~~PAl~Lv~~~t~~-~~pv~~G~i-----------S~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 197 GQAQRLGVKYFPALMLVDPKSGS-VRPLSYGFI-----------TQDDLAKRFLNVSTDFK 245 (248)
T ss_pred hHHHhcCCcccceEEEEECCCCc-EEEEeeccC-----------CHHHHHHHHHHHHhccC
Confidence 36689999999999999999852 233334443 46788888888777653
No 124
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=81.00 E-value=0.85 Score=32.57 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=18.6
Q ss_pred eChhHHHHHhCCcccceEEEEeCCC
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDG 40 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G 40 (101)
..++++|+++|++.+|+.+++|.+.
T Consensus 134 ~~D~~la~~m~I~~~Ptlvi~~~~~ 158 (176)
T PF13743_consen 134 QEDQQLAREMGITGFPTLVIFNENN 158 (176)
T ss_dssp HHHHHHHHHTT-SSSSEEEEE----
T ss_pred HHHHHHHHHcCCCCCCEEEEEeccc
Confidence 4678999999999999999999443
No 125
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=80.65 E-value=3.3 Score=27.19 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=19.3
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
+.+.++.+|+..||+.+| | | ..+.|..
T Consensus 118 ~~~~~~~~gi~gtPt~~v-~--g-----~~~~G~~ 144 (154)
T cd03023 118 NRQLARALGITGTPAFII-G--D-----TVIPGAV 144 (154)
T ss_pred HHHHHHHcCCCcCCeEEE-C--C-----EEecCCC
Confidence 356788999999999665 4 6 2456653
No 126
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=79.76 E-value=4.8 Score=26.90 Aligned_cols=38 Identities=29% Similarity=0.554 Sum_probs=25.9
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..+.++++|+..||++|| +|+ . +.|. .+...+..+|++
T Consensus 125 ~~~~~~~~~i~~tPt~~i---nG~---~--~~~~-----------~~~~~l~~~Id~ 162 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI---NGK---Y--VVGP-----------YTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE---TTC---E--EETT-----------TSHHHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEE---CCE---E--eCCC-----------CCHHHHHHHHcC
Confidence 346779999999999999 785 2 2222 146788888764
No 127
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.61 E-value=3.6 Score=30.06 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=31.4
Q ss_pred eChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
..+.+.++.+|+..||++|+-++ .|.|.++ ...|..+|+..+
T Consensus 202 ~~~~~~a~~~gv~gTPt~~v~~~--------~~~g~~~-----------~~~l~~~i~~~~ 243 (244)
T COG1651 202 AKNYKLAQQLGVNGTPTFIVNGK--------LVPGLPD-----------LDELKAIIDEAL 243 (244)
T ss_pred HHHHHHHHhcCCCcCCeEEECCe--------eecCCCC-----------HHHHHHHHHHhh
Confidence 45678899999999999999764 4566654 357777777654
No 128
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=79.54 E-value=6.8 Score=26.69 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=35.5
Q ss_pred HHHHHhCCc--ccceEEEEeCCCCCceeEE-EeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 20 DVARDFGAA--CTPEFFLFKKDGRRPFQLV-YHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 20 ~vA~~yga~--~tP~~fliD~~G~~~v~~~-Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
.+++.||+. ..|..++++.++. +.. +.|.+ +...+..-++..++|+-
T Consensus 70 ~~~~~fgl~~~~~P~v~i~~~~~~---KY~~~~~~~-----------t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 70 DLEEALNIGGFGYPAMVAINFRKM---KFATLKGSF-----------SEDGINEFLRELSYGRG 119 (130)
T ss_pred HHHHHcCCCccCCCEEEEEecccC---ccccccCcc-----------CHHHHHHHHHHHHcCCc
Confidence 499999975 5899999999762 122 44554 46789999999999985
No 129
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=79.39 E-value=3.9 Score=28.39 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=23.6
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCC
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRP 57 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~ 57 (101)
..+|+.+++|++|+ ++.+..|...+..+
T Consensus 78 ~~vPtivFld~~g~--vi~~i~Gy~~~~~~ 105 (130)
T cd02960 78 QYVPRIMFVDPSLT--VRADITGRYSNRLY 105 (130)
T ss_pred cccCeEEEECCCCC--CcccccccccCccc
Confidence 67999999999997 67888898877654
No 130
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.09 E-value=7.9 Score=29.43 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=36.9
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN 84 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v~~~ 84 (101)
+...|+++|++..|++.+ +| ++.-.|+- +.+.+..||+.+++.++.+..
T Consensus 173 d~~~A~e~gI~gVP~fv~---d~----~~~V~Gaq-----------~~~v~~~al~~~~~~~~~~~~ 221 (225)
T COG2761 173 DEAAAQEMGIRGVPTFVF---DG----KYAVSGAQ-----------PYDVLEDALRQLLAEKAEEHK 221 (225)
T ss_pred HHHHHHHCCCccCceEEE---cC----cEeecCCC-----------CHHHHHHHHHHHHhcccccCC
Confidence 356899999999998777 45 24445652 468999999999999875543
No 131
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.83 E-value=4.9 Score=31.89 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.7
Q ss_pred EEeChhHHHHHhCCcccceEEEEeCCCC
Q 034203 14 TLFQSQDVARDFGAACTPEFFLFKKDGR 41 (101)
Q Consensus 14 l~D~~~~vA~~yga~~tP~~fliD~~G~ 41 (101)
=.|..+.||..||++..|++|++- +|+
T Consensus 82 N~D~~p~vAaqfgiqsIPtV~af~-dGq 108 (304)
T COG3118 82 NCDAEPMVAAQFGVQSIPTVYAFK-DGQ 108 (304)
T ss_pred cCCcchhHHHHhCcCcCCeEEEee-CCc
Confidence 358899999999999999999996 574
No 132
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=78.26 E-value=5.7 Score=33.02 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=29.3
Q ss_pred eChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
+.+.++++.|++...|++.+++.+|+. -.++|+|..
T Consensus 406 ~~~~~~~~~~~v~~~P~~~i~~~~~~~-~~i~f~g~P 441 (555)
T TIGR03143 406 GEEPESETLPKITKLPTVALLDDDGNY-TGLKFHGVP 441 (555)
T ss_pred ccchhhHhhcCCCcCCEEEEEeCCCcc-cceEEEecC
Confidence 457789999999999999999877742 148999984
No 133
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=76.76 E-value=6.8 Score=28.44 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=24.3
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.|...+++++||+..+|+.++. ++|+ .|.|.
T Consensus 172 ~~~~~~~~~~~~V~~vPtl~i~-~~~~-----~~~G~ 202 (215)
T TIGR02187 172 ANENPDLAEKYGVMSVPKIVIN-KGVE-----EFVGA 202 (215)
T ss_pred CCCCHHHHHHhCCccCCEEEEe-cCCE-----EEECC
Confidence 4578899999999999998875 5572 27776
No 134
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=76.54 E-value=7.2 Score=26.19 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHhCCc-ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 20 DVARDFGAA-CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 20 ~vA~~yga~-~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
.+-+.|+.. ..-+++||+|+|. ++++|...++ -..+.+.|+++
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~--vK~r~~~p~~-----------~~~lf~~ID~M 111 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGG--VKLRWPEPID-----------PEELFDTIDAM 111 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCc--EEEecCCCCC-----------HHHHHHHHhCC
Confidence 677888854 3467899999997 7887666653 56888888875
No 135
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=76.26 E-value=5.8 Score=29.16 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=33.9
Q ss_pred EeChhHHHHHhCCc---------------ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 15 LFQSQDVARDFGAA---------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 15 ~D~~~~vA~~yga~---------------~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
.+...+++++|++. .+..+||||++|+ |...|.+.-+ ...+.+.|+.+++++
T Consensus 141 ~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~--~~~~~~~~~~-----------~~~i~~~l~~l~~~~ 207 (207)
T COG1999 141 PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGR--FLGTYDYGEP-----------PEEIAADLKKLLKER 207 (207)
T ss_pred HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCe--EEEEecCCCC-----------hHHHHHHHHHHhhcC
Confidence 34555677777655 4667899999995 4333333311 468888888888653
No 136
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=75.59 E-value=7.8 Score=26.73 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=28.4
Q ss_pred ChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHH
Q 034203 17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~ 73 (101)
.+.+.|+++|+..+|+.+| +| +..+.|.-. .+.++++|.
T Consensus 155 ~~~~~a~~~gv~GvP~~vv---~g----~~~~~G~~~-----------~~~l~~~l~ 193 (193)
T PF01323_consen 155 EDTAEARQLGVFGVPTFVV---NG----KYRFFGADR-----------LDELEDALQ 193 (193)
T ss_dssp HHHHHHHHTTCSSSSEEEE---TT----TEEEESCSS-----------HHHHHHHH-
T ss_pred HHHHHHHHcCCcccCEEEE---CC----EEEEECCCC-----------HHHHHHHhC
Confidence 4567789999999999999 66 356777722 467777663
No 137
>PHA02125 thioredoxin-like protein
Probab=74.89 E-value=4.4 Score=24.54 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=22.7
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.|+..+++++|++..+|+.. .|+ ..-++.|.
T Consensus 32 ~~~~~~l~~~~~v~~~PT~~----~g~--~~~~~~G~ 62 (75)
T PHA02125 32 TDEGVELTAKHHIRSLPTLV----NTS--TLDRFTGV 62 (75)
T ss_pred CCCCHHHHHHcCCceeCeEE----CCE--EEEEEeCC
Confidence 45778999999999999965 453 12456775
No 138
>PHA02278 thioredoxin-like protein
Probab=74.69 E-value=4.9 Score=26.30 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=23.1
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.+++++|++..+||.+++.. |+ ..-+..|.
T Consensus 62 ~~l~~~~~I~~iPT~i~fk~-G~--~v~~~~G~ 91 (103)
T PHA02278 62 EKAVKLFDIMSTPVLIGYKD-GQ--LVKKYEDQ 91 (103)
T ss_pred HHHHHHCCCccccEEEEEEC-CE--EEEEEeCC
Confidence 57999999999998888874 74 34456675
No 139
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=73.05 E-value=19 Score=27.46 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=29.2
Q ss_pred ceeEEEeC--hhHHHHHhCCc--ccceEEEEeCCCCCceeEEEeec
Q 034203 10 MWLITLFQ--SQDVARDFGAA--CTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 10 ~fpvl~D~--~~~vA~~yga~--~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.|=+..+. ...+-+++|.. .+.=+||+|.+| ++||+|.
T Consensus 193 ~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~g----rIRWags 234 (252)
T PF05176_consen 193 RYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNG----RIRWAGS 234 (252)
T ss_pred eEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCC----eEEeCcc
Confidence 34444444 56788888844 799999999999 6999987
No 140
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=69.21 E-value=29 Score=24.73 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=35.6
Q ss_pred hccccee-EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHH
Q 034203 6 YLFLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAI 72 (101)
Q Consensus 6 ~~~l~fp-vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI 72 (101)
|..+.|- |-.|.. .++..|++...|+.+++- +|+ ..-++.|.-+.. +..-+...|+..+
T Consensus 112 ~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk-~G~--~v~~~vG~~~~~----g~~f~~~~le~~L 171 (175)
T cd02987 112 YPAVKFCKIRASAT-GASDEFDTDALPALLVYK-GGE--LIGNFVRVTEDL----GEDFDAEDLESFL 171 (175)
T ss_pred CCCeEEEEEeccch-hhHHhCCCCCCCEEEEEE-CCE--EEEEEechHHhc----CCCCCHHHHHHHH
Confidence 4445553 223433 799999999999888887 475 344577774322 1123455565544
No 141
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=68.23 E-value=22 Score=24.21 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=40.7
Q ss_pred eeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 11 WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 11 fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
|-|=.|+..++++.|++...|++.++-. |+ -..+=-|.-|++. -+....+..++-+-|+.+-.|
T Consensus 50 ~kVDVDev~dva~~y~I~amPtfvffkn-gk--h~~~d~gt~~~~k-~~~~~~~k~~~idi~e~~yr~ 113 (114)
T cd02986 50 YLVDVDKVPVYTQYFDISYIPSTIFFFN-GQ--HMKVDYGSPDHTK-FVGSFKTKQDFIDLIEVIYRG 113 (114)
T ss_pred EEEeccccHHHHHhcCceeCcEEEEEEC-Cc--EEEEecCCCCCcE-EEEEcCchhHHHHHHHHHHcC
Confidence 4466789999999999999999996664 54 1233344434321 122233457777777766544
No 142
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=68.21 E-value=15 Score=26.43 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=17.2
Q ss_pred hhHHHHHhCCcccceEEEEeCCCC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGR 41 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~ 41 (101)
+.+.++++|++.||+++| +|+
T Consensus 156 ~~~~a~~~gI~gtPtfiI---nGk 176 (207)
T PRK10954 156 QEKAAADLQLRGVPAMFV---NGK 176 (207)
T ss_pred HHHHHHHcCCCCCCEEEE---CCE
Confidence 356789999999999888 564
No 143
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=67.51 E-value=18 Score=22.25 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=19.7
Q ss_pred ChhHHHHHhCCc--ccceEEEEeCC
Q 034203 17 QSQDVARDFGAA--CTPEFFLFKKD 39 (101)
Q Consensus 17 ~~~~vA~~yga~--~tP~~fliD~~ 39 (101)
....+++.||+. ..|+..+++..
T Consensus 54 ~~~~~~~~~~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 54 DFGRHLEYFGLKEEDLPVIAIINLS 78 (103)
T ss_pred hhHHHHHHcCCChhhCCEEEEEecc
Confidence 345799999999 99999999984
No 144
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=66.42 E-value=8.3 Score=23.44 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCC
Q 034203 66 RDIRLAIECVLSGQPVSSNQKPS 88 (101)
Q Consensus 66 ~~L~~AI~alLag~~v~~~~t~~ 88 (101)
+.++++|++.-+|++|+....|+
T Consensus 35 K~~~~~I~~~~aG~pVd~~~lP~ 57 (59)
T smart00685 35 KQFDDAIKAARAGRPVDLSELPP 57 (59)
T ss_pred hhHHHHHHHHHCCCCCChhcCCC
Confidence 56889999999999999988776
No 145
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=64.34 E-value=8.1 Score=28.79 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=31.3
Q ss_pred hhhhcccceeEEEeChhHHHHHhCCcccceEEEEeCCCC
Q 034203 3 LELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGR 41 (101)
Q Consensus 3 ~~~~~~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~ 41 (101)
.|+...+.=||-+|..|.++++||.+.+|..+- .+|+
T Consensus 159 ~~l~~~l~~~vYfdQ~g~Lt~rF~I~~VPavV~--q~g~ 195 (202)
T TIGR02743 159 NELEKRLDSRIYFDQHGKLTQKFGIKHVPARVS--QEGL 195 (202)
T ss_pred HHHHHHhCCceEEcCCchHhhccCceeeceEEE--ecCC
Confidence 466677888999999999999999999999764 5664
No 146
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=64.11 E-value=14 Score=28.44 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=48.5
Q ss_pred hhhcccc--eeEEE-e-ChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 4 ELYLFLM--WLITL-F-QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 4 ~~~~~l~--fpvl~-D-~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
+|-.+++ |||.. | ....|+..++.. -=++||+|+=| +|.|+=.+-.+. ....|++.||.+-.-..
T Consensus 81 ~l~~r~~~~ipVyqq~~~q~dvW~~L~G~-kdD~~iyDRCG----rL~~~i~~P~S~------l~~~~ve~Ai~~ty~~~ 149 (238)
T PF04592_consen 81 ELKRRVSEHIPVYQQDENQPDVWELLNGS-KDDFLIYDRCG----RLTYHIPLPYSF------LQFPYVEAAIKSTYCED 149 (238)
T ss_pred HHHHhCCCCCceecCCccccCHHHHhCCC-cCcEEEEeccC----cEEEEecCcHHH------hcCHHHHHHHHHHHccc
Confidence 4455667 99986 4 557899999877 56899999999 688886654432 24679999999876554
No 147
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=63.48 E-value=14 Score=27.56 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=29.5
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.+.+.++++++|++.||+.++- +|+ +..|..+ ...|++.|++
T Consensus 188 v~~~~~la~~lgi~gTPtiv~~--~G~-----~~~G~~~-----------~~~L~~~l~~ 229 (232)
T PRK10877 188 IADHYALGVQFGVQGTPAIVLS--NGT-----LVPGYQG-----------PKEMKAFLDE 229 (232)
T ss_pred HHHhHHHHHHcCCccccEEEEc--CCe-----EeeCCCC-----------HHHHHHHHHH
Confidence 4677889999999999988843 473 2256532 4577777664
No 148
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=63.43 E-value=14 Score=24.78 Aligned_cols=28 Identities=39% Similarity=0.789 Sum_probs=20.5
Q ss_pred ChhHHHHHhCCc-ccceEEEEeCCCCCceeEEEe
Q 034203 17 QSQDVARDFGAA-CTPEFFLFKKDGRRPFQLVYH 49 (101)
Q Consensus 17 ~~~~vA~~yga~-~tP~~fliD~~G~~~v~~~Y~ 49 (101)
-+..+|+.||+. -+|..+||.. | +.+|+
T Consensus 65 vSn~IAe~~~V~HeSPQ~ili~~-g----~~v~~ 93 (105)
T PF11009_consen 65 VSNAIAEDFGVKHESPQVILIKN-G----KVVWH 93 (105)
T ss_dssp HHHHHHHHHT----SSEEEEEET-T----EEEEE
T ss_pred hHHHHHHHhCCCcCCCcEEEEEC-C----EEEEE
Confidence 457899999999 6999999985 7 46765
No 149
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=63.07 E-value=7.5 Score=26.39 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=24.3
Q ss_pred hhHHHHHhCCc--ccceEEEEeCCCCCceeEEEeec
Q 034203 18 SQDVARDFGAA--CTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 18 ~~~vA~~yga~--~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
+.+++++||++ .-||.+++...+.+. ...|.|.
T Consensus 67 ~~~L~~~y~I~~~gyPTl~lF~~g~~~~-~~~Y~G~ 101 (116)
T cd03007 67 NMELGERYKLDKESYPVIYLFHGGDFEN-PVPYSGA 101 (116)
T ss_pred hHHHHHHhCCCcCCCCEEEEEeCCCcCC-CccCCCC
Confidence 47799999999 999999999643111 2567763
No 150
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=62.66 E-value=12 Score=28.09 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=32.2
Q ss_pred hhhhcccceeEEEeChhHHHHHhCCcccceEEEEeCCCC
Q 034203 3 LELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGR 41 (101)
Q Consensus 3 ~~~~~~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~ 41 (101)
.|+...+.=||-+|..|.++++||.+.+|..+---.+|+
T Consensus 157 ~~~~~~l~~~vYfdQ~G~Lt~rF~I~~VPAvV~~~q~G~ 195 (209)
T PRK13738 157 PEMSKALDSRIYFDQNGVLCQRFGIDQVPARVSAVPGGR 195 (209)
T ss_pred HHHHHHhCCceEEcCcchHHHhcCCeeeceEEEEcCCCC
Confidence 466677888999999999999999999998764226785
No 151
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=62.23 E-value=16 Score=30.62 Aligned_cols=54 Identities=9% Similarity=0.000 Sum_probs=40.4
Q ss_pred ChhHHHHHh--CCcccceEEEEeCCCCCceeEEEeecCCCCCC-CCCCCCcHHHHHHHHHH
Q 034203 17 QSQDVARDF--GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 17 ~~~~vA~~y--ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~-~~~~~~~~~~L~~AI~a 74 (101)
.....+++| |--+|-+..-+|++| .+.+.||.+|... .++..+.-..+|.+|.+
T Consensus 482 ~pe~T~~~f~dGw~~TGDlg~~d~dG----~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~ 538 (660)
T PLN02861 482 RQDLTEEVLIDGWFHTGDIGEWQPNG----AMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538 (660)
T ss_pred CHHHHHhhhhccCcccCceEEECCCC----cEEEEeccccceEcCCCeEEcHHHHHHHHhc
Confidence 334566666 556899999999999 5999999999775 35666667777776643
No 152
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=61.86 E-value=2.6 Score=29.92 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=14.8
Q ss_pred cccceEEEEeCCCCCceeEEEee
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHG 50 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G 50 (101)
..+...||||++|+ ++-.|.+
T Consensus 153 ~Hs~~~~Lidp~G~--i~~~y~~ 173 (174)
T PF02630_consen 153 DHSAFIYLIDPDGR--IRAIYNL 173 (174)
T ss_dssp EESSEEEEE-TTSE--EEEEECS
T ss_pred ecccEEEEEcCCCc--EEEEEcc
Confidence 35778999999997 6655643
No 153
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=61.81 E-value=12 Score=27.37 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034203 32 EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (101)
Q Consensus 32 ~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLa 77 (101)
+-||+|++|. ++-||.-..+ .-.++.-|+.+|+
T Consensus 138 ~KFLVd~~G~--vv~Ry~ptt~-----------p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 138 TKFLVDKDGH--VVKRFSPTTS-----------PLDIEKDIEKLLA 170 (171)
T ss_pred EEEeECCCCc--EEEeeCCCCC-----------ccccchhHHHHhc
Confidence 6799999997 6666664431 1234444777775
No 154
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=61.80 E-value=11 Score=26.29 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=15.9
Q ss_pred eChhHHHHHhCCcccceEEE
Q 034203 16 FQSQDVARDFGAACTPEFFL 35 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fl 35 (101)
+.+.+.|++.|+..||+.+|
T Consensus 162 ~~~~~~a~~~gv~G~Pt~vv 181 (201)
T cd03024 162 RADEARARQLGISGVPFFVF 181 (201)
T ss_pred HHHHHHHHHCCCCcCCEEEE
Confidence 34456788899999998877
No 155
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=61.24 E-value=26 Score=25.32 Aligned_cols=38 Identities=16% Similarity=0.390 Sum_probs=25.4
Q ss_pred eeEEEeCh--hHHHHHh--------CCcccceEEEEeCCCCCceeEEEeecC
Q 034203 11 WLITLFQS--QDVARDF--------GAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 11 fpvl~D~~--~~vA~~y--------ga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
.||..|.+ -.+.+.| |.-..|.+++++++| +..|.|..
T Consensus 74 I~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg----~p~~~~tY 121 (163)
T PF03190_consen 74 IPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDG----KPFFGGTY 121 (163)
T ss_dssp EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-----EEEEESS
T ss_pred EEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCC----Ceeeeeee
Confidence 57777744 4677777 788999999999999 47776653
No 156
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=60.78 E-value=10 Score=31.95 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=42.4
Q ss_pred EEEeChhHHHHHh-C-CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 13 ITLFQSQDVARDF-G-AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 13 vl~D~~~~vA~~y-g-a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
+..|+ ....++| + ...|-+.+..|.+| -+.++||-||-....+-..+..+++++|.+.
T Consensus 382 ~w~d~-er~~~~y~~~~y~tGD~~~~DedG----y~~i~GR~DDvI~vsG~Rig~~EvE~~l~~h 441 (528)
T COG0365 382 YWNDP-ERYKEAYFGRWYRTGDWAERDEDG----YFWLHGRSDDVIKVSGKRIGPLEIESVLLAH 441 (528)
T ss_pred hhCCH-HHHHHHHhhceeecCceeEEccCC----CEEEEeeccceEeccCeeccHHHHHHHHHhC
Confidence 33444 4455555 4 67899999999999 5999999998655455556678888877664
No 157
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.61 E-value=23 Score=27.87 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=42.7
Q ss_pred hccccee-EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034203 6 YLFLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (101)
Q Consensus 6 ~~~l~fp-vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v 81 (101)
|.+--|. |=.|+-+.+|..+|+..+||+.++...-+ +-++.|+ | ..-|+..|.......+-
T Consensus 50 Yp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k---id~~qGA-d-----------~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 50 YPGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK---IDQIQGA-D-----------ASGLEEKVAKYASTSAA 111 (288)
T ss_pred CcccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE---eeeecCC-C-----------HHHHHHHHHHHhccCcc
Confidence 3333333 66788999999999999999888875333 4567777 4 35677777776665543
No 158
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.00 E-value=10 Score=26.30 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.3
Q ss_pred ChhHHHHHhCCcccceEEEEeCCC
Q 034203 17 QSQDVARDFGAACTPEFFLFKKDG 40 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fliD~~G 40 (101)
.+.+.|.++|+..+|+.+|-|.+.
T Consensus 157 ~~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 157 EDQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHHcCCCccCEEEEEeCCe
Confidence 456778899999999999998764
No 159
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=57.73 E-value=8.1 Score=22.86 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.5
Q ss_pred ChhHHHHHhCCcccceEEEEe
Q 034203 17 QSQDVARDFGAACTPEFFLFK 37 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fliD 37 (101)
.+.+.++.+|+..||+.++-|
T Consensus 71 ~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHcCCCCCCEEEECC
Confidence 567789999999999999877
No 160
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=57.01 E-value=7.4 Score=26.57 Aligned_cols=29 Identities=24% Similarity=0.607 Sum_probs=18.9
Q ss_pred EEEeChhHHHHHh---CCcccceEEEEeCCCC
Q 034203 13 ITLFQSQDVARDF---GAACTPEFFLFKKDGR 41 (101)
Q Consensus 13 vl~D~~~~vA~~y---ga~~tP~~fliD~~G~ 41 (101)
++.|.+.++-++| |...+|+++++|++|+
T Consensus 78 i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 78 ILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp E-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred EEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 5667777777776 5889999999999986
No 161
>PHA02516 W baseplate wedge subunit; Provisional
Probab=56.53 E-value=15 Score=24.11 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcceee
Q 034203 65 GRDIRLAIECVLSGQPVSSNQKPSVGCSIK 94 (101)
Q Consensus 65 ~~~L~~AI~alLag~~v~~~~t~~~GC~I~ 94 (101)
...+++.|..+|..++-.....|-+||.|.
T Consensus 12 ~~~I~qsI~~iL~T~~Ger~~~p~fG~~l~ 41 (103)
T PHA02516 12 LEHIRQSIGDILLTPLGSRVMRREYGSLLP 41 (103)
T ss_pred HHHHHHHHHHHHcCCCcccccCcccccchH
Confidence 679999999999999999999999999864
No 162
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=55.72 E-value=66 Score=23.30 Aligned_cols=59 Identities=10% Similarity=0.286 Sum_probs=36.4
Q ss_pred hcccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHH
Q 034203 6 YLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (101)
Q Consensus 6 ~~~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~ 73 (101)
|..+.| +-.|.+. .+..|++...|+.+++. +|+ ++-++.|..+- . +..-+..+|+..|.
T Consensus 131 ~~~vkF-vkI~ad~-~~~~~~i~~lPTlliyk-~G~--~v~~ivG~~~~--g--g~~~~~~~lE~~L~ 189 (192)
T cd02988 131 FPDTKF-VKIISTQ-CIPNYPDKNLPTILVYR-NGD--IVKQFIGLLEF--G--GMNTTMEDLEWLLV 189 (192)
T ss_pred CCCCEE-EEEEhHH-hHhhCCCCCCCEEEEEE-CCE--EEEEEeCchhh--C--CCCCCHHHHHHHHH
Confidence 444455 3445543 46899999999888886 575 45668887442 1 22345566666543
No 163
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=55.27 E-value=29 Score=23.08 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=30.0
Q ss_pred EEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034203 33 FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (101)
Q Consensus 33 ~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v 81 (101)
.-++|.+.. +++|+|........+. . ....+..+|+++|++=|+
T Consensus 107 i~i~D~~~~---~~vW~g~a~~~~~~~~-~-~~~~i~~~V~~i~~~fP~ 150 (151)
T PF13590_consen 107 IDIIDAKTN---KVVWRGTASGRLSDNA-D-REEAIPKAVNKIFEQFPP 150 (151)
T ss_pred EEEEeCCCC---CEEEEEEEEeccCCCc-C-HHHHHHHHHHHHHHhCCC
Confidence 346776554 7999998755432222 2 678899999999987554
No 164
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=55.08 E-value=12 Score=25.39 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=19.9
Q ss_pred ChhHHHHHhCCc-ccceEEEEeCCC
Q 034203 17 QSQDVARDFGAA-CTPEFFLFKKDG 40 (101)
Q Consensus 17 ~~~~vA~~yga~-~tP~~fliD~~G 40 (101)
....++..|++. ..||.++++..+
T Consensus 77 ~~~~~~~~~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 77 PNNPFRTDPKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred cchhhHhccCcccCCCEEEEEcCCc
Confidence 356999999998 999999995443
No 165
>PLN02614 long-chain acyl-CoA synthetase
Probab=54.00 E-value=26 Score=29.56 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=39.2
Q ss_pred hhHHHHHh--CCcccceEEEEeCCCCCceeEEEeecCCCCCC-CCCCCCcHHHHHHHHHH
Q 034203 18 SQDVARDF--GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 18 ~~~vA~~y--ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~-~~~~~~~~~~L~~AI~a 74 (101)
....+++| |--+|-+..-+|.+| .+.+.||.+|... ..+..+.-..+|.++.+
T Consensus 486 pe~T~~~f~dGw~~TGDlg~~d~dG----~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~ 541 (666)
T PLN02614 486 EDLTKEVLIDGWLHTGDVGEWQPNG----SMKIIDRKKNIFKLSQGEYVAVENIENIYGE 541 (666)
T ss_pred HHHhhhhhccCCcccceEEEEcCCC----CEEEEEcchhceecCCCeeecHHHHHHHHhc
Confidence 34566666 455799999999999 5999999998765 35666667777766544
No 166
>PLN02736 long-chain acyl-CoA synthetase
Probab=52.75 E-value=28 Score=29.00 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=38.5
Q ss_pred ChhHHHHHh---CCcccceEEEEeCCCCCceeEEEeecCCCCCC-CCCCCCcHHHHHHHHHH
Q 034203 17 QSQDVARDF---GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 17 ~~~~vA~~y---ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~-~~~~~~~~~~L~~AI~a 74 (101)
..+..++.| |--.|-+..-+|.+| .+.+.||.+|... .++..+.-.++|.++.+
T Consensus 475 ~~~~t~~~~~~dgw~~TGDlg~~d~dG----~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~ 532 (651)
T PLN02736 475 DEVQTREVIDEDGWLHTGDIGLWLPGG----RLKIIDRKKNIFKLAQGEYIAPEKIENVYAK 532 (651)
T ss_pred CHHHHHhhhccCCCeeccceEEEcCCC----cEEEEEechhheEcCCCcEechHHHHHHHhc
Confidence 344566666 445799999999999 5999999998764 34555566666665543
No 167
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=51.88 E-value=27 Score=29.27 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=38.4
Q ss_pred hHHHHHh----CCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 19 QDVARDF----GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 19 ~~vA~~y----ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
...+..| |-..|-+...+|.+| .+.+.||.||.....+..+.-.+++++|..
T Consensus 481 ~~~~~~f~~~~g~~~TGDlg~~d~dG----~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~ 536 (647)
T PTZ00237 481 EKFKQLFSKFPGYYNSGDLGFKDENG----YYTIVSRSDDQIKISGNKVQLNTIETSILK 536 (647)
T ss_pred HHHHHHHhCCCCEEECCcEEEECCCC----eEEEEeccCCEEEECCEEeCHHHHHHHHHh
Confidence 4444444 345788889999999 599999999876555666677788877764
No 168
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=51.00 E-value=35 Score=27.29 Aligned_cols=45 Identities=9% Similarity=0.083 Sum_probs=35.3
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
-..|-..+.+|.+| .+.+.||.++....++..+.-.+++++|.+.
T Consensus 411 ~~~TGDl~~~~~~g----~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~ 455 (547)
T PRK06087 411 WYYSGDLCRMDEAG----YIKITGRKKDIIVRGGENISSREVEDILLQH 455 (547)
T ss_pred CcCcCceEEECCCC----CEEEEecchhhhhcCCEEECHHHHHHHHHhC
Confidence 45788889999999 5899999988765556666778888888653
No 169
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=49.55 E-value=15 Score=24.96 Aligned_cols=21 Identities=19% Similarity=0.624 Sum_probs=17.4
Q ss_pred ChhHHHHHhCCcccceEEEEeCCC
Q 034203 17 QSQDVARDFGAACTPEFFLFKKDG 40 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fliD~~G 40 (101)
.+.+.++.+|+..||+++| +|
T Consensus 131 ~~~~~~~~~gi~gTPt~iI---nG 151 (178)
T cd03019 131 KAEKLAKKYKITGVPAFVV---NG 151 (178)
T ss_pred HHHHHHHHcCCCCCCeEEE---CC
Confidence 4456788999999999998 56
No 170
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=49.37 E-value=1.1e+02 Score=24.10 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=49.2
Q ss_pred hhcccceeEEEeChhHHHHHhCC-----cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 5 LYLFLMWLITLFQSQDVARDFGA-----ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 5 ~~~~l~fpvl~D~~~~vA~~yga-----~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
++....--|..=..|.+-|..-. ..-|-+.++|.+|+ +.+---|. |.+ .-++|...|.++|.+.
T Consensus 48 ~f~~~d~iIfI~A~GIaVR~IAP~l~dK~~DPaVvvvDe~G~--~vIsLLsG------H~G---GAN~LA~~iA~~lga~ 116 (315)
T PRK05788 48 AFGCYDALIFIMATGIAVRVIAPLLKDKWSDPAVVVVDEKGK--FVISLLSG------HHG---GANELARDLAKILGAV 116 (315)
T ss_pred HHhcCCeEEEEEChHHHHHHhchhhhccCcCCCEEEEeCCCC--EEEEcccC------Ccc---cHHHHHHHHHHHhCCE
Confidence 33444444555555655555532 35899999999997 55543333 111 2689999999999999
Q ss_pred CCCCCCCCC
Q 034203 80 PVSSNQKPS 88 (101)
Q Consensus 80 ~v~~~~t~~ 88 (101)
+|-+..|..
T Consensus 117 pVITTAtd~ 125 (315)
T PRK05788 117 PVITTATDV 125 (315)
T ss_pred EEEeCCccc
Confidence 998877755
No 171
>PRK06145 acyl-CoA synthetase; Validated
Probab=47.27 E-value=37 Score=26.63 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=34.6
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
...|-+..-+|.+| .+.+.||.|+.....+..+.-.+++.+|..+
T Consensus 374 ~~~TGDl~~~~~~g----~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~ 418 (497)
T PRK06145 374 WFRSGDVGYLDEEG----FLYLTDRKKDMIISGGENIASSEVERVIYEL 418 (497)
T ss_pred CeeccceEEEcCCC----cEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 45788888899999 5899999998765555556677788877664
No 172
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=46.35 E-value=24 Score=28.81 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=33.1
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+..-+|++| .+.+.||.||....++..+.-.++|++|.+
T Consensus 441 ~~TGDlg~~~~dG----~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~ 483 (600)
T PRK08279 441 FNTGDLMRDDGFG----HAQFVDRLGDTFRWKGENVATTEVENALSG 483 (600)
T ss_pred EeecceEEEcCCc----cEEEecccCCeEEECCcccCHHHHHHHHhc
Confidence 3577777899999 599999999876656666667778877765
No 173
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.50 E-value=32 Score=29.05 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=38.6
Q ss_pred ChhHHHHHhCCc---ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHH
Q 034203 17 QSQDVARDFGAA---CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAI 72 (101)
Q Consensus 17 ~~~~vA~~yga~---~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI 72 (101)
..+.=|++|.+. +|-+.+=+|++| -++-.|++.|+....++++...++++.+
T Consensus 402 ap~HNa~aF~a~GFYrsGD~V~~~~dG----yl~V~GR~KDQINRgGEKIAAeEvEn~L 456 (542)
T COG1021 402 APEHNARAFDADGFYRSGDLVRRDPDG----YLVVEGRVKDQINRGGEKIAAEEVENLL 456 (542)
T ss_pred CchhhhhccCcCCceecCceeEecCCc----eEEEEeeehhhhccccchhhHHHHHHHH
Confidence 334456777655 799999999999 4888999999876666666666666643
No 174
>PLN03051 acyl-activating enzyme; Provisional
Probab=45.45 E-value=29 Score=27.70 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=33.9
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.+|-+...+|.+| .+.+.||.||.....+..+.-.++|++|.+
T Consensus 359 ~~TGDlg~~d~dG----~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~ 401 (499)
T PLN03051 359 RRHGDIMKRTPGG----YFCVQGRADDTMNLGGIKTSSVEIERACDR 401 (499)
T ss_pred eecCCeEEECCCC----cEEEEeccCCEEeeCCEECCHHHHHHHHHh
Confidence 3788888899999 599999999877666666677778777753
No 175
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=45.04 E-value=24 Score=31.99 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=34.3
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-+|-+..-+|.+| .+.|.||.||....++..+.-.++|.+|.+
T Consensus 680 y~TGDlg~~~~dG----~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~ 722 (1389)
T TIGR03443 680 YRTGDLGRYLPDG----NVECCGRADDQVKIRGFRIELGEIDTHLSQ 722 (1389)
T ss_pred eecCCceeEcCCC----CEEEecccCCEEEeCcEEecHHHHHHHHHh
Confidence 4677777889999 599999999987766666667788887765
No 176
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=45.03 E-value=34 Score=28.08 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=34.0
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+..-+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 477 ~~TGDl~~~d~dG----~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~ 519 (625)
T TIGR02188 477 YFTGDGARRDKDG----YIWITGRVDDVINVSGHRLGTAEIESALVS 519 (625)
T ss_pred EECCceEEEcCCC----cEEEEecccCEEEeCCEEECHHHHHHHHHh
Confidence 5788889999999 589999999876555555667788887765
No 177
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=44.92 E-value=24 Score=18.04 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=14.7
Q ss_pred HHhCCcccceEEEEeCC
Q 034203 23 RDFGAACTPEFFLFKKD 39 (101)
Q Consensus 23 ~~yga~~tP~~fliD~~ 39 (101)
..++...+|+.++++++
T Consensus 47 ~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 47 KRYGVGGVPTLVVFGPG 63 (69)
T ss_pred HhCCCccccEEEEEeCC
Confidence 47889999999999876
No 178
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=44.90 E-value=29 Score=28.53 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=33.4
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
...|-....+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 474 ~~~TGDl~~~d~dG----~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~ 517 (629)
T PRK10524 474 VYSTFDWGIRDADG----YYFILGRTDDVINVAGHRLGTREIEESISS 517 (629)
T ss_pred EEEcCCcEEEcCCC----cEEEEEEecCeEEeCCEEeCHHHHHHHHHh
Confidence 45677888889999 589999999876555555667778877765
No 179
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=44.88 E-value=38 Score=24.20 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeee
Q 034203 64 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 95 (101)
Q Consensus 64 ~~~~L~~AI~alLag~~v~~~~t~~~GC~I~~ 95 (101)
...||+.||+.--.++-. ....|++||-|..
T Consensus 6 ~~~~M~~Al~lA~k~~g~-T~pNP~VG~VIV~ 36 (146)
T COG0117 6 DERYMERALELAEKGQGT-TSPNPSVGCVIVK 36 (146)
T ss_pred HHHHHHHHHHHHHhcCCc-CCCCCceeEEEEE
Confidence 367999999977777654 4448999999985
No 180
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=44.54 E-value=23 Score=25.11 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=20.5
Q ss_pred EEeChhHHHHHhCCcccceEEEEeCCCC
Q 034203 14 TLFQSQDVARDFGAACTPEFFLFKKDGR 41 (101)
Q Consensus 14 l~D~~~~vA~~yga~~tP~~fliD~~G~ 41 (101)
..|.+.++++.+|+..||+.+ + ++|+
T Consensus 157 ~i~~~~~l~~~~gi~gtPtii-~-~~G~ 182 (197)
T cd03020 157 PVAANLALGRQLGVNGTPTIV-L-ADGR 182 (197)
T ss_pred hHHHHHHHHHHcCCCcccEEE-E-CCCe
Confidence 456778999999999999997 3 3373
No 181
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=44.41 E-value=85 Score=20.22 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=41.0
Q ss_pred hhhhhcccceeEEEeChhHHHHHhC-----CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 2 LLELYLFLMWLITLFQSQDVARDFG-----AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 2 ~~~~~~~l~fpvl~D~~~~vA~~yg-----a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
+-++|....--|..=..|.+.|... -..-|-+.++|.+|+ +.+---|.=. + .-++|...|.++|
T Consensus 5 ~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~--~vIplL~GH~------G---Gan~lA~~iA~~l 73 (84)
T PF11760_consen 5 LRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGR--FVIPLLGGHR------G---GANELARQIAELL 73 (84)
T ss_dssp HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT----EEEEEE-TTT------T----HHHHHHHHHHHT
T ss_pred HHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCC--EEEEeccCCc------c---hHHHHHHHHHHHh
Confidence 3456666666677777777776653 346899999999997 5555555411 1 2589999999999
Q ss_pred cCCCCCCCCC
Q 034203 77 SGQPVSSNQK 86 (101)
Q Consensus 77 ag~~v~~~~t 86 (101)
.++++-...|
T Consensus 74 ga~~ViTTas 83 (84)
T PF11760_consen 74 GAQPVITTAS 83 (84)
T ss_dssp T-EE------
T ss_pred CCEEEeeCCC
Confidence 9988766543
No 182
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=43.53 E-value=67 Score=21.56 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=19.5
Q ss_pred eChhHHHHHhCCcccceEEEEeCCC
Q 034203 16 FQSQDVARDFGAACTPEFFLFKKDG 40 (101)
Q Consensus 16 D~~~~vA~~yga~~tP~~fliD~~G 40 (101)
+...+++++||+.++|+..++.. |
T Consensus 69 ~~e~~L~~r~gv~~~PaLvf~R~-g 92 (107)
T PF07449_consen 69 AAERALAARFGVRRWPALVFFRD-G 92 (107)
T ss_dssp HHHHHHHHHHT-TSSSEEEEEET-T
T ss_pred hhHHHHHHHhCCccCCeEEEEEC-C
Confidence 36778999999999999988875 6
No 183
>PRK06164 acyl-CoA synthetase; Validated
Probab=42.76 E-value=37 Score=27.05 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=32.5
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-..|-+..-+|.+| .+.+.||.++.....+..+.-..++.+|..
T Consensus 407 ~~~TGDl~~~~~~g----~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~ 450 (540)
T PRK06164 407 YFRTGDLGYTRGDG----QFVYQTRMGDSLRLGGFLVNPAEIEHALEA 450 (540)
T ss_pred ceecCCeEEEcCCc----eEEEEeecCCeEEECCEEcCHHHHHHHHHh
Confidence 45677888889999 588999998865545555666777777754
No 184
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=42.48 E-value=95 Score=21.25 Aligned_cols=59 Identities=15% Similarity=0.315 Sum_probs=36.0
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
-..+|...++...|-....++.|+ +++.+.-.++... ..........+.+++|+++...
T Consensus 122 ~~~lA~~~~~pivp~~~~~~~~~~--~~i~~~~~i~~~~-~~~~~~~~~~~~~~lE~~i~~~ 180 (192)
T cd07984 122 PARLALKTGAPVVPAFAYRLPGGG--YRIEFEPPLENPP-SEDVEEDTQRLNDALEAAIREH 180 (192)
T ss_pred HHHHHHHHCCcEEEEEEEEcCCCC--EEEEEeCCCCCCC-CCCHHHHHHHHHHHHHHHHHhC
Confidence 346889999999999988887665 5676665555422 1111122344555666665433
No 185
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=42.12 E-value=32 Score=27.82 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=34.1
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
-.|-+...+|.+| .+.+.||.+|.....+..+.-.++|.+|.+.
T Consensus 412 ~~TGD~g~~d~~G----~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 455 (539)
T PRK06334 412 YVTGDLGYVDRHG----ELFLKGRLSRFVKIGAEMVSLEALESILMEG 455 (539)
T ss_pred EECCCEEEECCCC----eEEEEeccCCeEEECCEEECHHHHHHHHHHc
Confidence 4566777889999 5899999998766666667778888887764
No 186
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=41.59 E-value=33 Score=28.70 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=34.4
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
...|-+...+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 500 ~~~tGDlg~~d~dG----~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~ 543 (652)
T TIGR01217 500 VWRHGDWITLTPRG----GIVIHGRSDSTLNPQGVRMGSAEIYNAVER 543 (652)
T ss_pred EEEcCCcEEECCCC----cEEEEecccCeEecCCEEcCHHHHHHHHHh
Confidence 35678888999999 599999999876656666667788877765
No 187
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=41.09 E-value=14 Score=26.58 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=27.4
Q ss_pred EeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 15 ~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
-|..+++.+.|++.+.|...+++++|. .+.-.|+
T Consensus 101 d~~~~~l~~ky~v~~iP~l~i~~~dG~---~v~~d~r 134 (157)
T KOG2501|consen 101 DDLIQKLSEKYEVKGIPALVILKPDGT---VVTEDAR 134 (157)
T ss_pred CHHHHHHHHhcccCcCceeEEecCCCC---EehHhhH
Confidence 345688999999999999999999996 4444444
No 188
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=40.77 E-value=23 Score=21.97 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=27.3
Q ss_pred EEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 33 FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 33 ~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
.|.+|++|. |.+-+.|.+.-+ -.|...+++.|+..|+.
T Consensus 32 ~~~V~~dG~--I~lP~iG~v~v~------G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 32 EYTVDPDGT--ISLPLIGPVKVA------GLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp SEE--TTSE--EEETTTEEEE-T------T--HHHHHHHHHHHHTT
T ss_pred ceEECCCCc--EeecccceEEEC------CCCHHHHHHHHHHHHHH
Confidence 789999996 777788988643 13788999999998887
No 189
>PLN02654 acetate-CoA ligase
Probab=40.62 E-value=42 Score=28.18 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=36.0
Q ss_pred CCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 26 GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 26 ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
|...|-...-+|.+| -+.+.||.||.....+..+...+++.+|.+
T Consensus 513 g~~~TGD~~~~d~dG----~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~ 557 (666)
T PLN02654 513 GYYFSGDGCSRDKDG----YYWLTGRVDDVINVSGHRIGTAEVESALVS 557 (666)
T ss_pred CEEEeCceEEECCCC----cEEEeeeccCeEEeCCEEECHHHHHHHHHh
Confidence 556788889999999 599999999876666666677888887765
No 190
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=39.50 E-value=59 Score=25.56 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 26 GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 26 ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
+-..|-+..-+|++| .+.+.||.|+....++..+.-.+++.+|..
T Consensus 369 ~~~~TGD~~~~~~~g----~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~ 413 (502)
T PRK08276 369 GWVTVGDVGYLDEDG----YLYLTDRKSDMIISGGVNIYPQEIENLLVT 413 (502)
T ss_pred CceeecceEEEcCCc----CEEEeccCcceEEeCCEEeCHHHHHHHHHh
Confidence 445688888899999 589999998876555656667778877754
No 191
>PHA03303 envelope glycoprotein L; Provisional
Probab=39.42 E-value=41 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCccee
Q 034203 64 TGRDIRLAIECVLSGQPVSSNQKPSVGCSI 93 (101)
Q Consensus 64 ~~~~L~~AI~alLag~~v~~~~t~~~GC~I 93 (101)
....|-+||...|.+++-.....+..||--
T Consensus 119 ~r~aL~~al~~al~sr~d~st~pp~~GCV~ 148 (159)
T PHA03303 119 IRDALLDALSGALQDRGDISTDIPDIGCVF 148 (159)
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCCccc
Confidence 456788888999999888888899999953
No 192
>PRK13390 acyl-CoA synthetase; Provisional
Probab=39.25 E-value=71 Score=25.16 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=31.6
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|-+..-+|.+| .+.+.||.|+.....+..+.-..++++|.+
T Consensus 382 ~tGDl~~~~~dg----~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~ 423 (501)
T PRK13390 382 TVGDLGSVDEDG----YLYLADRKSFMIISGGVNIYPQETENALTM 423 (501)
T ss_pred EcCceEEECCCC----eEEEeeccccceeECCeeeCHHHHHHHHHh
Confidence 577778889999 699999998876655555666777777654
No 193
>PHA00415 25 baseplate wedge subunit
Probab=39.20 E-value=38 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcceee
Q 034203 65 GRDIRLAIECVLSGQPVSSNQKPSVGCSIK 94 (101)
Q Consensus 65 ~~~L~~AI~alLag~~v~~~~t~~~GC~I~ 94 (101)
...+++.|..+|..++-....-|.+||-|.
T Consensus 30 ~~sI~qsI~~IL~T~~GER~~rPdfG~~l~ 59 (131)
T PHA00415 30 ARAIKNSLLGIVTTRKGERPFDPNFGCDIS 59 (131)
T ss_pred HHHHHHHHHHHhCCCCCccccCcccCcchH
Confidence 578999999999999999999999999764
No 194
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=39.20 E-value=48 Score=27.33 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=33.4
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-..|-+..-+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 484 ~~~TGDl~~~d~dG----~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 527 (637)
T PRK00174 484 MYFTGDGARRDEDG----YYWITGRVDDVLNVSGHRLGTAEIESALVA 527 (637)
T ss_pred EEECCceEEEcCCC----cEEEEEecccEEEeCCEEECHHHHHHHHHh
Confidence 35688888899999 599999999876555555666777777764
No 195
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=38.84 E-value=53 Score=26.51 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=34.2
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
--.|-+..-+|.+| .+.+.||.+|....++..+.-.+++.+|.++
T Consensus 401 ~~~TGD~~~~~~dG----~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 445 (542)
T PRK06155 401 WFHTGDRVVRDADG----WFRFVDRIKDAIRRRGENISSFEVEQVLLSH 445 (542)
T ss_pred cEeccceEEEcCCc----eEEEEecCCCEEEeCCEEECHHHHHHHHHhC
Confidence 34677788889999 5899999998765555566677888877663
No 196
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=38.68 E-value=36 Score=19.04 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHcCC
Q 034203 64 TGRDIRLAIECVLSGQ 79 (101)
Q Consensus 64 ~~~~L~~AI~alLag~ 79 (101)
+++.|+.||+++..|+
T Consensus 1 tee~l~~Ai~~v~~g~ 16 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK 16 (45)
T ss_dssp -HHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhCC
Confidence 3678999999999886
No 197
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=38.34 E-value=24 Score=28.47 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=35.6
Q ss_pred ccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec-CCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ-FDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~-idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
-.+||+|.|..|..-.+ .=+++++.++|. .+..|. ++.........++...+...|+.-|
T Consensus 303 l~~ypvl~e~~g~~Vaq-----f~~Tv~v~~~g~----~~~t~~~~~~~~~~s~~~~~d~~~~~~l~~~~ 363 (389)
T TIGR00495 303 LQPYPVLYEKEGEFVAQ-----FKFTVLLMPNGP----MRITSGEFEPDLYKSEMEVQDPEIKALLASPI 363 (389)
T ss_pred cccCCceEeeCCCeEEE-----EEEEEEECCCCc----EEeCCCCCCHhhcCCCCCCCCHHHHHHHhCcc
Confidence 35799999988754333 457899999993 555664 3433232233344555555554444
No 198
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=38.30 E-value=47 Score=28.91 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=38.2
Q ss_pred hhHHHHHh---CCcccceEEEEeCCCCCceeEEEeecCCCCCC-CCCCCCcHHHHHHHHHH
Q 034203 18 SQDVARDF---GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 18 ~~~vA~~y---ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~-~~~~~~~~~~L~~AI~a 74 (101)
....+++| |=-+|-+..-+|.+| .+.+.||.+|-.. ..++.+.-..+|+++.+
T Consensus 559 pe~T~~~f~~dGW~~TGDig~~d~dG----~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~ 615 (746)
T PTZ00342 559 KEQTKNAFTEDGYFKTGDIVQINKNG----SLTFLDRSKGLVKLSQGEYIETDMLNNLYSQ 615 (746)
T ss_pred hhhhhhhcCcCCcccCCcEEEECCCC----eEEEEccCCCeEEeCCCEEEchHHHHHHHhc
Confidence 35667777 345899999999999 6999999998765 34555556666665543
No 199
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=38.30 E-value=53 Score=28.79 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=36.4
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alL 76 (101)
-+|-+..-+|.+| .+.+.||.||.....+..+.-.++|++|.+..
T Consensus 1021 ~~TGD~~~~~~~g----~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~ 1065 (1146)
T PRK08633 1021 YVTGDKGHLDEDG----FLTITDRYSRFAKIGGEMVPLGAVEEELAKAL 1065 (1146)
T ss_pred EECCCEEEEcCCc----eEEEEecccchhhhCcEEECHHHHHHHHHhcc
Confidence 4688888999999 59999999987666666667788898888765
No 200
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=37.78 E-value=33 Score=27.21 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=32.6
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
.|++..-+|.+| .+.+.||.||.....+..+.-.+++++|.+.
T Consensus 278 ~tgD~g~~d~~G----~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~ 320 (386)
T TIGR02372 278 DLQDRLAWDKDG----GFTILGRKDEILQVGGVNVSPGHVRDILERN 320 (386)
T ss_pred ecCceEEEcCCC----cEEEecccCCEEEECCEEEcHHHHHHHHHcC
Confidence 467778899999 5999999988765555566677777777653
No 201
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=37.61 E-value=33 Score=22.05 Aligned_cols=22 Identities=5% Similarity=0.057 Sum_probs=18.2
Q ss_pred cccceeEEEeChhHHHHHhCCc
Q 034203 7 LFLMWLITLFQSQDVARDFGAA 28 (101)
Q Consensus 7 ~~l~fpvl~D~~~~vA~~yga~ 28 (101)
..++||+..|++.++-+++|..
T Consensus 34 ~~~p~~ly~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 34 TGFPFPLYVDPERKLYKALGLK 55 (115)
T ss_pred cCCCCcEEEeCcHHHHHHhCCc
Confidence 4668888888888888888877
No 202
>PRK06839 acyl-CoA synthetase; Validated
Probab=37.60 E-value=36 Score=26.56 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=33.3
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-..|-+.+-+|.+| .+.+.||.||.....+..+.-..++.+|..
T Consensus 372 ~~~TGDl~~~~~~g----~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~ 415 (496)
T PRK06839 372 WLCTGDLARVDEDG----FVYIVGRKKEMIISGGENIYPLEVEQVINK 415 (496)
T ss_pred CeeecceEEEcCCC----cEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 45788889999999 588999998866555555566777777754
No 203
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=37.41 E-value=42 Score=27.82 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=33.0
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
...|-+..-+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 499 ~~~TGDl~~~d~dG----~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~ 542 (655)
T PRK03584 499 VWRHGDWIEITEHG----GVVIYGRSDATLNRGGVRIGTAEIYRQVEA 542 (655)
T ss_pred EeecCCeEEECCCC----eEEEEeeccCeeecCcEEECHHHHHHHHHh
Confidence 35678888899999 699999999876555555566777776654
No 204
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=37.21 E-value=54 Score=27.74 Aligned_cols=52 Identities=10% Similarity=-0.039 Sum_probs=35.9
Q ss_pred hHHHHHh---CCcccceEEEEeCCCCCceeEEEeecCCCCCC-CCCCCCcHHHHHHHHHH
Q 034203 19 QDVARDF---GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 19 ~~vA~~y---ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~-~~~~~~~~~~L~~AI~a 74 (101)
...+++| |--+|-+.--+|.+| .+.+.||.+|... ..+..+.-..+|.++.+
T Consensus 526 e~T~~~f~~dGw~~TGDig~~d~dG----~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~ 581 (700)
T PTZ00216 526 ELTREVLDEDGWFHTGDVGSIAANG----TLRIIGRVKALAKNCLGEYIALEALEALYGQ 581 (700)
T ss_pred hHhhhhccccCCeeccceEEEcCCC----cEEEEEehHhheecCCCceeccHHHHHHHhc
Confidence 4556666 345788888899999 5999999988754 44544555566665543
No 205
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=37.17 E-value=46 Score=23.17 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=27.0
Q ss_pred ccceeEEEeChhHHHHHhCCcccc--eEEEEeCCCC
Q 034203 8 FLMWLITLFQSQDVARDFGAACTP--EFFLFKKDGR 41 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~tP--~~fliD~~G~ 41 (101)
.++|-..+|..+.-..+|.....| ..|+||+.|+
T Consensus 118 ~~~f~~~~gn~~~D~~~y~~~gi~~~~i~~i~~~~~ 153 (157)
T smart00775 118 GNPFYAGFGNRITDVISYSAVGIPPSRIFTINPKGE 153 (157)
T ss_pred CCCEEEEeCCCchhHHHHHHcCCChhhEEEECCCCc
Confidence 566766788889999999866544 5899999995
No 206
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=37.17 E-value=45 Score=27.56 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=33.8
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+...+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 474 ~~TGD~g~~d~dG----~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~ 516 (628)
T TIGR02316 474 YSSFDWGIRDEDG----YTFILGRTDDVINVAGHRLGTREIEESVSS 516 (628)
T ss_pred EECCceEEEcCCC----cEEEEEcCcceEEeCCEEeCHHHHHHHHHh
Confidence 5677888899999 599999999876655656667788887765
No 207
>PRK08162 acyl-CoA synthetase; Validated
Probab=36.93 E-value=57 Score=26.01 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=33.0
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+..-+|.+| .+.|.||.|+....++..+.-.+++.+|.+
T Consensus 418 ~~TGDl~~~d~dg----~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~ 460 (545)
T PRK08162 418 FHTGDLAVLHPDG----YIKIKDRSKDIIISGGENISSIEVEDVLYR 460 (545)
T ss_pred cccCceEEEcCCc----cEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 3577888899999 599999998876655566667778877764
No 208
>PRK07788 acyl-CoA synthetase; Validated
Probab=36.79 E-value=43 Score=26.86 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=32.9
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
--.|-...-+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 428 ~~~TGDl~~~~~~g----~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~ 471 (549)
T PRK07788 428 LLSSGDVGYFDEDG----LLFVDGRDDDMIVSGGENVFPAEVEDLLAG 471 (549)
T ss_pred ceecCceEEEcCCC----CEEEeccCcceEEECCEEECHHHHHHHHHh
Confidence 34677788899999 589999999876555555666777777765
No 209
>PTZ00062 glutaredoxin; Provisional
Probab=36.59 E-value=1.4e+02 Score=22.01 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=38.8
Q ss_pred hhhhhcccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCC-----CCCCCcHHHHHHHHHHHH
Q 034203 2 LLELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPS-----NNLPVTGRDIRLAIECVL 76 (101)
Q Consensus 2 ~~~~~~~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~-----~~~~~~~~~L~~AI~alL 76 (101)
|.+-|..+.|-.+ |.+ |++...|+++++. +|+ ..-++.|+ |-.... .........+.+-++.++
T Consensus 42 l~~~~~~~~F~~V-~~d------~~V~~vPtfv~~~-~g~--~i~r~~G~-~~~~~~~~~~~~~~~~~~~~~~~~v~~li 110 (204)
T PTZ00062 42 LVEDFPSLEFYVV-NLA------DANNEYGVFEFYQ-NSQ--LINSLEGC-NTSTLVSFIRGWAQKGSSEDTVEKIERLI 110 (204)
T ss_pred HHHHCCCcEEEEE-ccc------cCcccceEEEEEE-CCE--EEeeeeCC-CHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3445556666444 332 9999999999996 574 33445554 211000 001112334666677777
Q ss_pred cCCCCCC
Q 034203 77 SGQPVSS 83 (101)
Q Consensus 77 ag~~v~~ 83 (101)
+..+|-.
T Consensus 111 ~~~~Vvv 117 (204)
T PTZ00062 111 RNHKILL 117 (204)
T ss_pred hcCCEEE
Confidence 7766553
No 210
>PLN02574 4-coumarate--CoA ligase-like
Probab=36.49 E-value=56 Score=26.41 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=32.8
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
--.|-....+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 431 ~~~TGDlg~~~~~G----~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 474 (560)
T PLN02574 431 WLRTGDIAYFDEDG----YLYIVDRLKEIIKYKGFQIAPADLEAVLIS 474 (560)
T ss_pred CcccceEEEEECCC----eEEEEecchhheEECCEEECHHHHHHHHHh
Confidence 34677778889999 589999999876655555666777776654
No 211
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=36.33 E-value=52 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=31.3
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-+|-....++ +| .+.+.||.||.....+..+.-.++|.+|.+
T Consensus 466 ~~TGDlg~~~-dG----~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 507 (631)
T PRK07769 466 VRTGDYGVYF-DG----ELYITGRVKDLVIIDGRNHYPQDLEYTAQE 507 (631)
T ss_pred eeccccccEE-CC----EEEEEcccccEEEECCeeeCHHHHHHHHHh
Confidence 3566666666 78 699999999877666666777888887764
No 212
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=36.26 E-value=67 Score=25.16 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=26.9
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
..-|.-+||+|++| ++|+.|--+.. +.....|-.+++-||+.
T Consensus 245 N~l~GyV~L~D~s~----kIRW~g~G~aT------p~Eve~L~~~~k~L~~~ 286 (287)
T KOG4614|consen 245 NLLTGYVLLLDKSG----KIRWQGFGTAT------PEEVEQLLSCTKLLLED 286 (287)
T ss_pred ceeeEEEEEEccCc----eEEEeecCCCC------HHHHHHHHHHHHHHhcC
Confidence 34588899999999 69999984422 11234455555556543
No 213
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=35.92 E-value=67 Score=25.61 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=32.0
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+..-+|.+| .+.+.||.++....++..+.-.+++++|.+
T Consensus 410 ~~TGDl~~~~~~g----~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~ 452 (527)
T TIGR02275 410 YYTGDLVRLTPEG----YIVVVGRAKDQINRGGEKIAAEEIENLLLA 452 (527)
T ss_pred EEcCceEEEcCCc----cEEEEecccceeecCCEEECHHHHHHHHHh
Confidence 4677788888889 589999988865555555566777777664
No 214
>PRK05850 acyl-CoA synthetase; Validated
Probab=35.79 E-value=62 Score=26.13 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.4
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
-+|-...-+| +| .+.+.||.+|.....+..+.-.++|.+|.+.
T Consensus 439 ~~TGDl~~~~-~G----~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~ 481 (578)
T PRK05850 439 LRTGDLGFIS-EG----ELFIVGRIKDLLIVDGRNHYPDDIEATIQEI 481 (578)
T ss_pred eeccceeeEE-CC----EEEEEcccccEEEECCeecCHHHHHHHHHHh
Confidence 4677776778 88 6899999988766666677788899988875
No 215
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=35.42 E-value=41 Score=26.71 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=33.7
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-+..-+|.+| .+.+.||.||.....+..+.-.++|.+|.+.
T Consensus 326 ~~TGDl~~~d~dG----~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~ 369 (452)
T PRK07445 326 FETDDLGYLDAQG----YLHILGRNSQKIITGGENVYPAEVEAAILAT 369 (452)
T ss_pred EECCCEEEEcCCC----CEEEEeecCCEEEECCEEECHHHHHHHHHhC
Confidence 4677777889999 5899999988765556666777888877663
No 216
>PLN03102 acyl-activating enzyme; Provisional
Probab=35.41 E-value=44 Score=27.34 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=32.7
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-+|-+..-+|.+| .+.+.||.+|.....+..+.-..++++|+.
T Consensus 422 ~~TGDlg~~d~dG----~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~ 464 (579)
T PLN03102 422 LNTGDVGVIHPDG----HVEIKDRSKDIIISGGENISSVEVENVLYK 464 (579)
T ss_pred eecCceEEEcCCC----eEEEEeccCcEEEECCEEECHHHHHHHHHh
Confidence 4677888899999 589999999865555555566777777765
No 217
>PRK08315 AMP-binding domain protein; Validated
Probab=34.54 E-value=54 Score=26.19 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=31.8
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-...-+|.+| .+.+.|++|+.....+..+.-.++++++.+.
T Consensus 429 ~~TGD~~~~~~dg----~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~ 472 (559)
T PRK08315 429 MHTGDLAVMDEEG----YVNIVGRIKDMIIRGGENIYPREIEEFLYTH 472 (559)
T ss_pred EEccceEEEcCCc----eEEEEeeccceEEECCEEEcHHHHHHHHHhC
Confidence 4577777888999 6999999998655445555566777777653
No 218
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=34.45 E-value=9.5 Score=24.28 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.1
Q ss_pred cceeEEEeChhHHHHHhCCcccce
Q 034203 9 LMWLITLFQSQDVARDFGAACTPE 32 (101)
Q Consensus 9 l~fpvl~D~~~~vA~~yga~~tP~ 32 (101)
+.|||-.|.+|+|...=|..+-|.
T Consensus 41 l~YPv~V~~dG~V~~LpG~e~FPD 64 (74)
T PF12357_consen 41 LKYPVQVDRDGKVTPLPGCEFFPD 64 (74)
T ss_pred ccCCeEEcCCCCEeeCCCCCcCCC
Confidence 459999999999887767776665
No 219
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=33.76 E-value=38 Score=21.15 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 034203 65 GRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 98 (101)
Q Consensus 65 ~~~L~~AI~alLag~~v~~~~t~~~GC~I~~~~~ 98 (101)
+.+++.|++...... .....++||-|...++
T Consensus 5 ~~~m~~a~~~a~~s~---~~~~~~vgaviv~~~~ 35 (102)
T PF00383_consen 5 EEFMRIAIELAKRSR---PCGNFPVGAVIVDPDG 35 (102)
T ss_dssp HHHHHHHHHHHHTHB---TTTSSSEEEEEEETTT
T ss_pred HHHHHHHHHHHHhcc---ccCCCCEEEEEEeccC
Confidence 578888888777665 5668899999987543
No 220
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=33.67 E-value=1.5e+02 Score=19.88 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=28.4
Q ss_pred ccceeEEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 8 ~l~fpvl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
.+.|-+.. +.++++.+++.. |+.+++.+..+ -...|.|.
T Consensus 22 ~~~F~~~~--~~~~~~~~~~~~-p~i~~~k~~~~--~~~~y~~~ 60 (184)
T PF13848_consen 22 DYQFGVTF--NEELAKKYGIKE-PTIVVYKKFDE--KPVVYDGD 60 (184)
T ss_dssp TSEEEEEE---HHHHHHCTCSS-SEEEEEECTTT--SEEEESSS
T ss_pred CcEEEEEc--HHHHHHHhCCCC-CcEEEeccCCC--Cceecccc
Confidence 44555554 567999999998 99999988332 16889997
No 221
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=33.49 E-value=62 Score=25.29 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=32.7
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-...-+|.+| .+.+.||.||.....+..+.-.+++++|.++
T Consensus 394 ~~tGDl~~~~~~g----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 437 (513)
T PRK07656 394 LHTGDLGRLDEEG----YLYIVDRKKDMFIVGGFNVYPAEVEEVLYEH 437 (513)
T ss_pred eeccceEEEcCCe----eEEEEecccceEEeCCEEeCHHHHHHHHHhC
Confidence 4577777888888 5899999988665555556667788877654
No 222
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=33.40 E-value=63 Score=25.92 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=32.9
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
-.|-+..-+|.+| .+.+.||.||.....+..+.-.+++.+|..+
T Consensus 439 ~~TGD~~~~~~~g----~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~ 482 (560)
T PRK08751 439 LHTGDIARMDEQG----FVYIVDRKKDMILVSGFNVYPNEIEDVIAMM 482 (560)
T ss_pred ccccceEEEcCCc----eEEEEeechhheeECCEEEcHHHHHHHHHhC
Confidence 4577777788899 5899999988765555566677888887654
No 223
>PRK06184 hypothetical protein; Provisional
Probab=32.96 E-value=1.4e+02 Score=24.26 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=38.1
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
.+.|.++.+++.|++. ....+|+-|+| -+.+++.-+ ....|.+.++.+..|++
T Consensus 447 ~~~d~~g~~~~~~~~~-~~~~~lvRPDg----~v~~~~~~~----------~~~~~~~~l~~~~~~~~ 499 (502)
T PRK06184 447 DLVDDAGHFRDAYGLT-GGTLVLVRPDG----YVGLIAAGD----------DAAALEAYLARVGLGRK 499 (502)
T ss_pred ceeCCCccHHHHhcCC-CCcEEEECCCc----ceEEEecCC----------CHHHHHHHHHHhcCCCc
Confidence 4678899999999975 46789999999 355554321 24568888888776654
No 224
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=32.82 E-value=73 Score=25.07 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=27.8
Q ss_pred hHHHHHhCCccc---------------ceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 19 QDVARDFGAACT---------------PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 19 ~~vA~~yga~~t---------------P~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.++|++|.|... =-+||||++|+ -+.|-|+ +. +...+.+.|..
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~---Fvd~~Gr-N~---------~~~~~~~~I~~ 273 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE---FVDYYGR-NY---------DADELADSILK 273 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc---eehhhcc-cC---------CHHHHHHHHHH
Confidence 456777766532 24799999997 4667777 32 24566666654
No 225
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=32.25 E-value=65 Score=25.25 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=31.7
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|.+..-+|.+| .+.+.||.+|.....+..+.-.+++++|..
T Consensus 397 ~TGD~~~~~~~g----~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~ 438 (515)
T TIGR03098 397 WSGDTVRRDEEG----FLYFVGRRDEMIKTSGYRVSPTEVEEVAYA 438 (515)
T ss_pred eccceEEEcCCc----eEEEEeccccceecCCEEeCHHHHHHHHhc
Confidence 467777888888 588999999876655656667777777754
No 226
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=32.21 E-value=59 Score=27.06 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=23.9
Q ss_pred ChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecC
Q 034203 17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
.-.+++++|++..+|++|+ +| +..|.|+.
T Consensus 517 ~~~~~~~~~~v~~vP~~~i---~~----~~~~~G~~ 545 (555)
T TIGR03143 517 HFPDLKDEYGIMSVPAIVV---DD----QQVYFGKK 545 (555)
T ss_pred ccHHHHHhCCceecCEEEE---CC----EEEEeeCC
Confidence 3478999999999999988 46 47788986
No 227
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.09 E-value=1.4e+02 Score=23.55 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=40.9
Q ss_pred hhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 18 ~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
...+|+.+++...|..-+.+.+|.+ +++..+=..+|... +...++..++.+.+|+...-.
T Consensus 226 ~~~LA~~~~a~vip~~~~r~~~g~~-y~l~i~p~~~~~~~-~D~~~~a~~mn~~~E~~I~~~ 285 (308)
T COG1560 226 PAKLARLTGAAVVPVFPVRNPDGSG-YTLHIHPPMTDDPS-EDVEADAQRMNDFVEKWIRAH 285 (308)
T ss_pred HHHHHHHhCCCEEEEEEEEeCCCCe-EEEEEeccccCCCC-CCHHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999888853 45555544454432 233445667777777766543
No 228
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=31.62 E-value=1.1e+02 Score=20.04 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=29.6
Q ss_pred eEEEEeC-CCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCC
Q 034203 32 EFFLFKK-DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSS 83 (101)
Q Consensus 32 ~~fliD~-~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v~~ 83 (101)
+..=|++ +|. +.++|.|+=.- =+.+.-.|...|+.+|...-++.
T Consensus 34 e~~~i~~~~g~--V~l~l~GaC~g------C~sS~~TLk~gIE~~L~~~i~ev 78 (93)
T COG0694 34 ELVGIDEEDGV--VYLRLGGACSG------CPSSTVTLKNGIERQLKEEIPEV 78 (93)
T ss_pred EEEEEecCCCe--EEEEeCCcCCC------CcccHHHHHHHHHHHHHHhCCcc
Confidence 3444665 675 67889998542 23457789999999888765443
No 229
>PRK07638 acyl-CoA synthetase; Validated
Probab=31.48 E-value=59 Score=25.50 Aligned_cols=43 Identities=7% Similarity=0.029 Sum_probs=32.1
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
.|-...-+|.+| .+.+.||.+|.....+..+.-.+++++|.++
T Consensus 364 ~TGDl~~~d~~g----~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~ 406 (487)
T PRK07638 364 TVRDVGYEDEEG----FIYIVGREKNMILFGGINIFPEEIESVLHEH 406 (487)
T ss_pred ecCccEeEcCCC----eEEEEecCCCeEEeCCEEECHHHHHHHHHhC
Confidence 567777889999 5899999988755555556667788877653
No 230
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=31.48 E-value=57 Score=26.41 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=32.1
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+..-+|.+| .+.+.||.+|....++..+.-..+++++.+
T Consensus 416 ~~TGDl~~~d~dG----~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 458 (563)
T PLN02860 416 LDTGDIGWIDKAG----NLWLIGRSNDRIKTGGENVYPEEVEAVLSQ 458 (563)
T ss_pred EEccceEEEcCCC----CEEEeecccceeEECCEEccHHHHHHHHHh
Confidence 3677788889999 589999999876655555566677776654
No 231
>PRK09274 peptide synthase; Provisional
Probab=31.09 E-value=47 Score=26.59 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=30.4
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|-+..-+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 423 ~TGDlg~~d~dG----~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 464 (552)
T PRK09274 423 RMGDLGYLDAQG----RLWFCGRKAHRVETAGGTLYTIPCERIFNT 464 (552)
T ss_pred EcCCEEEEccCC----cEEEEeccCCeEEECCEEECcHHHHHHHHh
Confidence 566667788889 589999999876555555556677776665
No 232
>PLN02309 5'-adenylylsulfate reductase
Probab=30.90 E-value=1.2e+02 Score=25.24 Aligned_cols=47 Identities=15% Similarity=0.340 Sum_probs=30.4
Q ss_pred ChhHHHH-HhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 17 QSQDVAR-DFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 17 ~~~~vA~-~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
....+++ .|+++..||.+++.+...+ .+.|.|.-. +...|..-|++|
T Consensus 409 ~~~~la~~~~~I~~~PTil~f~~g~~~--~v~Y~~~~R----------~~~~L~~fv~~~ 456 (457)
T PLN02309 409 DQKEFAKQELQLGSFPTILLFPKNSSR--PIKYPSEKR----------DVDSLLSFVNSL 456 (457)
T ss_pred cchHHHHhhCCCceeeEEEEEeCCCCC--eeecCCCCc----------CHHHHHHHHHHh
Confidence 3456775 6999999999999765532 456765311 234566666554
No 233
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=30.67 E-value=61 Score=28.72 Aligned_cols=44 Identities=7% Similarity=0.018 Sum_probs=34.0
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
-.|-+..-+|.+| .+.+.||.||.....+..+.-.++|+++.+.
T Consensus 1012 ~~TGDl~~~d~dG----~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~ 1055 (1140)
T PRK06814 1012 YDTGDIVTIDEEG----FITIKGRAKRFAKIAGEMISLAAVEELAAEL 1055 (1140)
T ss_pred EecCCEEEECCCC----eEEEEecccCeeeeCCEEECHHHHHHHHHhc
Confidence 4577788889999 5899999998766556566677888877664
No 234
>COG3628 Phage baseplate assembly protein W [General function prediction only]
Probab=30.53 E-value=93 Score=21.44 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeee
Q 034203 64 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 95 (101)
Q Consensus 64 ~~~~L~~AI~alLag~~v~~~~t~~~GC~I~~ 95 (101)
...+++++|.-+|+...-+.---+-+||.+..
T Consensus 18 ~~dhirQSi~~IL~Tp~GsRvmRp~yGs~L~~ 49 (116)
T COG3628 18 DLDHIRQSIRDILSTPLGSRVMRPDYGSNLPR 49 (116)
T ss_pred ccHHHHHHHHHHHhCCCCccccccccccchHH
Confidence 46899999999999988888888899998753
No 235
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=30.52 E-value=67 Score=25.01 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=32.1
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
--.|-+..-+| +| .+.+.||.||.....+..+.-..++++|...
T Consensus 333 ~~~TGD~~~~~-~g----~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~ 376 (458)
T PRK09029 333 WFATRDRGEWQ-NG----ELTILGRLDNLFFSGGEGIQPEEIERVINQH 376 (458)
T ss_pred ccCCCCcEEEe-CC----EEEEecccccceeeCCEEeCHHHHHHHHhcC
Confidence 34677777788 88 6999999988765555566677888877653
No 236
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=30.39 E-value=68 Score=24.97 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=32.8
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.-.|-+..-+|.+| .+.+.||.|+.....+..+.-.+++.+|.+
T Consensus 361 ~~~tGDl~~~~~~g----~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~ 404 (483)
T PRK03640 361 WFKTGDIGYLDEEG----FLYVLDRRSDLIISGGENIYPAEIEEVLLS 404 (483)
T ss_pred CeeccceEEEcCCC----CEEEeecccCeEEeCCEEECHHHHHHHHHh
Confidence 34677778889999 589999999865555555666778887765
No 237
>PRK07470 acyl-CoA synthetase; Validated
Probab=30.00 E-value=83 Score=24.96 Aligned_cols=45 Identities=20% Similarity=0.071 Sum_probs=32.9
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
--.|-+..-+|.+| .+.+.||.||.....+..+.-..+|.+|.++
T Consensus 395 ~~~TGDl~~~~~~g----~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~ 439 (528)
T PRK07470 395 WFRTGDLGHLDARG----FLYITGRASDMYISGGSNVYPREIEEKLLTH 439 (528)
T ss_pred cEecceeEEEccCC----eEEEeCCccceEEeCCEEECHHHHHHHHHhC
Confidence 34677778889999 5899999988654445555667788777653
No 238
>PLN03052 acetate--CoA ligase; Provisional
Probab=29.40 E-value=70 Score=27.51 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.3
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~ 73 (101)
.+|-+...+|.+| -+.+.||.||.....+..+...+++++|.
T Consensus 591 ~~tGDl~~~d~dG----~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~ 632 (728)
T PLN03052 591 RRHGDIFERTSGG----YYRAHGRADDTMNLGGIKVSSVEIERVCN 632 (728)
T ss_pred EecCceEEECCCC----eEEEEecCCCEEeeCCEEeCHHHHHHHHH
Confidence 4778888999999 59999999987666666666778887764
No 239
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=29.37 E-value=25 Score=21.08 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=17.9
Q ss_pred HHHHHhCCcccceEEEEeCCCCCceeEEEee
Q 034203 20 DVARDFGAACTPEFFLFKKDGRRPFQLVYHG 50 (101)
Q Consensus 20 ~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G 50 (101)
+..+.+..-.+-..||+|++|. +.+|-
T Consensus 43 ~~i~~~~~~~~g~~~ivd~~G~----ii~hp 69 (81)
T PF02743_consen 43 EIISNIKFGNNGYAFIVDKNGT----IIAHP 69 (81)
T ss_dssp HHHTTSBBTTTBEEEEEETTSB----BCE-S
T ss_pred eEEEeeEECCCEEEEEEECCCC----EEEeC
Confidence 3444455556888999999994 55553
No 240
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=29.25 E-value=1.6e+02 Score=22.99 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=36.5
Q ss_pred hHHHHHhCCc--ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034203 19 QDVARDFGAA--CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (101)
Q Consensus 19 ~~vA~~yga~--~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v 81 (101)
..+++.||.. ..|...+++.+|. ..|.- ++. ..+...+++-|+.+++|+..
T Consensus 280 ~~~~~~~~~~~~~~P~~vi~~~~~~----~~y~~--~~~------~~~~~~i~~fi~~~~~g~~~ 332 (462)
T TIGR01130 280 GRELEYFGLKAEKFPAVAIQDLEGN----KKYPM--DQE------EFSSENLEAFVKDFLDGKLK 332 (462)
T ss_pred HHHHHHcCCCccCCceEEEEeCCcc----cccCC--CcC------CCCHHHHHHHHHHHhcCCCC
Confidence 4677888987 6999999999872 22321 110 23578999999999999743
No 241
>PLN02246 4-coumarate--CoA ligase
Probab=29.22 E-value=64 Score=25.79 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=32.6
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-+..-+|.+| .+.+.||.|+.....+..+.-.+++.+|.++
T Consensus 414 ~~TGD~~~~~~~g----~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~ 457 (537)
T PLN02246 414 LHTGDIGYIDDDD----ELFIVDRLKELIKYKGFQVAPAELEALLISH 457 (537)
T ss_pred eeecceEEEeCCC----eEEEEecccceEEECCEEECcHHHHHHHHhC
Confidence 3577777888888 5999999998765555556667888877654
No 242
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=28.96 E-value=48 Score=22.70 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.6
Q ss_pred ChhHHHHHhCCcccceEEE
Q 034203 17 QSQDVARDFGAACTPEFFL 35 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fl 35 (101)
.+.+.|+++|+..+|+.+|
T Consensus 155 ~~~~~a~~~gi~gvPtfvv 173 (192)
T cd03022 155 ANTEEAIARGVFGVPTFVV 173 (192)
T ss_pred HHHHHHHHcCCCcCCeEEE
Confidence 3456778899999999988
No 243
>PRK07867 acyl-CoA synthetase; Validated
Probab=28.79 E-value=57 Score=26.28 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=33.4
Q ss_pred CCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 26 GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 26 ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
|--.|-+..-+|.+| .+.+.||.||....++..+.-.+++.+|.+.
T Consensus 381 g~~~TGD~~~~~~~g----~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 426 (529)
T PRK07867 381 GVYWSGDLAYRDADG----YAYFAGRLGDWMRVDGENLGTAPIERILLRY 426 (529)
T ss_pred CeEeeccEEEEeCCC----cEEEeccccCeEEECCEEeCHHHHHHHHHhC
Confidence 344677788899999 5899999988655555555667777777653
No 244
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=28.54 E-value=1.3e+02 Score=17.56 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=12.5
Q ss_pred CcccceEEEEeCCCC
Q 034203 27 AACTPEFFLFKKDGR 41 (101)
Q Consensus 27 a~~tP~~fliD~~G~ 41 (101)
+..-|+.|-+|.+|+
T Consensus 15 ~~~aP~vF~~d~~g~ 29 (65)
T PF13459_consen 15 VELAPEVFELDDDGK 29 (65)
T ss_pred HhhCCccEEECCCCC
Confidence 445699999999995
No 245
>PRK13388 acyl-CoA synthetase; Provisional
Probab=28.47 E-value=84 Score=25.34 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=32.4
Q ss_pred CCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 26 GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 26 ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
|-..|-+..-+|.+| .+.+.||.||....++..+.-..++.+|.+
T Consensus 380 g~~~TGD~~~~~~dg----~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (540)
T PRK13388 380 GMYWSGDLAYRDADG----WIYFAGRTADWMRVDGENLSAAPIERILLR 424 (540)
T ss_pred CceeccceEEEcCCC----cEEEeccCCceEEECCEEeCHHHHHHHHHh
Confidence 345677888889999 588999988865544555566677776655
No 246
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=28.37 E-value=1e+02 Score=20.67 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=32.7
Q ss_pred HHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034203 22 ARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (101)
Q Consensus 22 A~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~ 80 (101)
+-+|.+....|-|++| +| .++++-. +| ++-+.|-..+.+|.+.+.
T Consensus 16 ~lryk~~va~hgflfd-dg----~~vw~e~-~d--------~~w~rl~~vv~al~ss~r 60 (111)
T PF02484_consen 16 ALRYKNEVARHGFLFD-DG----DIVWSED-DD--------ETWNRLCDVVNALISSNR 60 (111)
T ss_pred HHHHHhhccccceEec-CC----cEEEecC-Ch--------HHHHHHHHHHHHHHhhHH
Confidence 3568889999999999 57 4788755 32 245778888888877654
No 247
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=28.36 E-value=92 Score=21.67 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=29.7
Q ss_pred ceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 31 PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 31 P~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
...+.+|++|. |.+=|.|.+.-.- .|-.++++.|++.|+.
T Consensus 20 ~~~~~V~~dG~--I~lP~iG~v~v~G------~T~~e~~~~I~~~l~~ 59 (165)
T TIGR03027 20 SGSVPVRPDGK--ITTPLVGDLVASG------KTPTQLARDIEEKLAK 59 (165)
T ss_pred ccceEECCCCe--EeecccCeEEECC------CCHHHHHHHHHHHHHH
Confidence 34689999997 7788999986431 2667888888887765
No 248
>PRK05852 acyl-CoA synthetase; Validated
Probab=28.28 E-value=67 Score=25.64 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=32.6
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.+|-....+|.+| .+.+.||.+|.....+..+.-..++++|..
T Consensus 409 ~~~TGD~~~~d~dG----~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~ 452 (534)
T PRK05852 409 WLRTGDLGSLSAAG----DLSIRGRIKELINRGGEKISPERVEGVLAS 452 (534)
T ss_pred CcccCceEEEeCCC----cEEEEecchhhEEECCEEECHHHHHHHHHh
Confidence 45788889999999 589999998865544545556677776654
No 249
>PRK12583 acyl-CoA synthetase; Provisional
Probab=28.04 E-value=76 Score=25.27 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=32.4
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+..-+|.+| .+.+.||.|+.....+..+.-.+++++|..
T Consensus 430 ~~TGDl~~~~~dg----~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~ 472 (558)
T PRK12583 430 MHTGDLATMDEQG----YVRIVGRSKDMIIRGGENIYPREIEEFLFT 472 (558)
T ss_pred eeccceEEECCCc----cEEEEecccceeEECCEEeCHHHHHHHHHh
Confidence 4677878889999 599999999876555555666777777754
No 250
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=28.04 E-value=86 Score=25.18 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=33.2
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
--.|-+..-+|.+| .+.+.||.++.....+..+.-..++++|..+
T Consensus 436 ~~~TGDl~~~~~~g----~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~ 480 (557)
T PRK07059 436 FFRTGDVGVMDERG----YTKIVDRKKDMILVSGFNVYPNEIEEVVASH 480 (557)
T ss_pred ceecCcEEEEcCCC----cEEEecccccceEECCEEEcHHHHHHHHHhC
Confidence 34677777788888 5889999988765555556677888887654
No 251
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=27.81 E-value=1.8e+02 Score=22.21 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=36.4
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCC---CCCcHHHHHHHHHHHHcCC
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNN---LPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~---~~~~~~~L~~AI~alLag~ 79 (101)
..+|+.+|+...|-...-+++|+ +++.+.-.++.....+. .......+.+++|+.+...
T Consensus 235 a~LA~~~~apVvp~~~~R~~~g~--y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~ 296 (308)
T PRK06553 235 AKLARQYDCPVHGARCIRLPGGR--FRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREY 296 (308)
T ss_pred HHHHHHHCCCEEEEEEEEcCCCe--EEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 37899999999998888778775 67777666553211111 1112344555666665443
No 252
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=27.65 E-value=1.3e+02 Score=17.27 Aligned_cols=36 Identities=25% Similarity=0.187 Sum_probs=23.5
Q ss_pred EEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 33 FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 33 ~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
.|.|+++|+ |...-.|-.-.+ =..+-++|++.|-..
T Consensus 2 ~~~I~~dG~--V~~~v~G~~G~~---------C~~~t~~lE~~LG~v 37 (48)
T PF11211_consen 2 EFTIYPDGR--VEEEVEGFKGSS---------CLEATAALEEALGTV 37 (48)
T ss_pred EEEECCCcE--EEEEEEeccChh---------HHHHHHHHHHHhCce
Confidence 378999997 677677764321 245666777776553
No 253
>PRK07514 malonyl-CoA synthase; Validated
Probab=27.54 E-value=73 Score=24.94 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=32.7
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-....+|.+| .+.+.||.|+.....+..+.-..++.+|..+
T Consensus 379 ~~TGDl~~~~~~g----~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~ 422 (504)
T PRK07514 379 FITGDLGKIDERG----YVHIVGRGKDLIISGGYNVYPKEVEGEIDEL 422 (504)
T ss_pred eeecceEEEcCCc----cEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 4677777888888 5899999988655555556667888877653
No 254
>PRK09088 acyl-CoA synthetase; Validated
Probab=27.29 E-value=68 Score=25.10 Aligned_cols=43 Identities=16% Similarity=-0.013 Sum_probs=31.7
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+..-+|.+| .+.+.||.||.....+..+.-..++++|..
T Consensus 363 ~~TGDl~~~~~~g----~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~ 405 (488)
T PRK09088 363 FRTGDIARRDADG----FFWVVDRKKDMFISGGENVYPAEIEAVLAD 405 (488)
T ss_pred eeecceEEEcCCC----cEEEeccccceEEeCCEEECHHHHHHHHHh
Confidence 4677888888899 589999998875555555556677776654
No 255
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=26.92 E-value=1.1e+02 Score=18.93 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=12.9
Q ss_pred CcccceEEEEeCCCC
Q 034203 27 AACTPEFFLFKKDGR 41 (101)
Q Consensus 27 a~~tP~~fliD~~G~ 41 (101)
...-|+.|-++.+|+
T Consensus 17 ~~~aPdvF~~~d~G~ 31 (68)
T COG1141 17 LAVAPDVFDYDDEGI 31 (68)
T ss_pred hhcCCcceeeCCCcc
Confidence 456899999999995
No 256
>PRK07868 acyl-CoA synthetase; Validated
Probab=26.81 E-value=63 Score=28.85 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=32.1
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+...+|.+| .+.|.||.|+.....+..+.-.++|++|.+
T Consensus 838 ~~TGDlg~~d~dG----~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~ 880 (994)
T PRK07868 838 ISTEYLFRRDDDG----DYWLVDRRGSVIRTARGPVYTEPVTDALGR 880 (994)
T ss_pred EeccceEEEcCCC----CEEEeccCCCEEEeCCceEcHHHHHHHHhc
Confidence 4688888999999 599999999876554444556666666654
No 257
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=26.75 E-value=80 Score=24.93 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=31.1
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|-+...+|.+| .+.+.||.||....++..+.-..++.+|..
T Consensus 382 ~TGD~~~~~~~g----~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~ 423 (509)
T PRK12406 382 TSGDVGYLDADG----YLFLCDRKRDMVISGGVNIYPAEIEAVLHA 423 (509)
T ss_pred EEccEEEEcCCc----eEEEeecccceEEECCEEECHHHHHHHHHh
Confidence 466677888888 589999998866555555666778877765
No 258
>PRK11586 napB nitrate reductase cytochrome C550 subunit; Provisional
Probab=26.59 E-value=64 Score=23.14 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.2
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCC
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP 57 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~ 57 (101)
-+.|+.-||...|-+-++|++|+ .+ +.++..++
T Consensus 89 ~~~a~~~gAt~Is~THf~DR~Gk---~l---~~vsprRY 121 (149)
T PRK11586 89 VESYRTTGAPRISPTHFMDSDGK---VG---AEVAPRRY 121 (149)
T ss_pred HhHHhhcCCCcCCccceecCCCC---Cc---cccCccce
Confidence 36788999999888888999996 33 66666554
No 259
>PRK07529 AMP-binding domain protein; Validated
Probab=26.55 E-value=81 Score=26.19 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=32.5
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+..-+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 447 ~~TGDlg~~d~dG----~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~ 489 (632)
T PRK07529 447 LNTGDLGRIDADG----YFWLTGRAKDLIIRGGHNIDPAAIEEALLR 489 (632)
T ss_pred eEcCcEEEEcCCc----eEEEEecccCEEEeCCEEECHHHHHHHHHh
Confidence 3677778889999 689999999876655555566777777765
No 260
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=26.41 E-value=3.5e+02 Score=21.95 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=44.1
Q ss_pred hhhhhcccceeEEEe--ChhHHHHHhC---CcccceEEE----------EeCCCCCceeEEEeecCCCCCCCCCCCCcHH
Q 034203 2 LLELYLFLMWLITLF--QSQDVARDFG---AACTPEFFL----------FKKDGRRPFQLVYHGQFDDSRPSNNLPVTGR 66 (101)
Q Consensus 2 ~~~~~~~l~fpvl~D--~~~~vA~~yg---a~~tP~~fl----------iD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~ 66 (101)
++|+-.+++.||.+= .++.+..+.+ +..-||.|+ +...|+....+.-+|.-+ .+..+.+
T Consensus 173 hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~H~fl~~~~~G~~~iv~t~GN~~~hliLRGg~~------~pNy~~~ 246 (353)
T PRK12755 173 HREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQPHRFLGINQEGQVALLETRGNPDGHVILRGGKK------GPNYDAA 246 (353)
T ss_pred HHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCCCeeeeeCCCCcEEEEECCCCCCEEEEeCCCCC------CCCCCHH
Confidence 578889999999986 3344444444 467788876 344444444566666511 1223567
Q ss_pred HHHHHHHHHHcC
Q 034203 67 DIRLAIECVLSG 78 (101)
Q Consensus 67 ~L~~AI~alLag 78 (101)
.+..+...+.+-
T Consensus 247 ~i~~a~~~l~k~ 258 (353)
T PRK12755 247 SVAACEAQLEKA 258 (353)
T ss_pred HHHHHHHHHHHc
Confidence 788887777664
No 261
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=26.34 E-value=87 Score=26.45 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=32.7
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+..-+|.+| .+.+.||.+|.....+..+.-.+++.++..
T Consensus 593 ~~TGDlg~~d~dG----~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~ 635 (718)
T PRK08043 593 YDTGDIVRFDEQG----FVQIQGRAKRFAKIAGEMVSLEMVEQLALG 635 (718)
T ss_pred EecCCEEEEcCCC----cEEEEecCCCeeEeCcEEcCHHHHHHHHHh
Confidence 4677888899999 599999999876655655666777776654
No 262
>PRK13382 acyl-CoA synthetase; Provisional
Probab=26.32 E-value=74 Score=25.57 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=33.5
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
.-.|-...-+|.+| .+.+.||.||.....+..+.-..++.+|...
T Consensus 417 ~~~TGDl~~~~~~g----~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 461 (537)
T PRK13382 417 FMASGDVGYLDENG----RLFVVGRDDEMIVSGGENVYPIEVEKTLATH 461 (537)
T ss_pred CEeeCceEEEeCCC----cEEEeccccceeEECCEEECHHHHHHHHHhC
Confidence 44677788889999 5899999998766555555667777777654
No 263
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=26.12 E-value=68 Score=26.21 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=24.8
Q ss_pred hHHHHHhCCcccceEEEEeCCCCCceeEEEeec
Q 034203 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (101)
Q Consensus 19 ~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~ 51 (101)
..+|..||++.-||.-++..+- .+-|+|.
T Consensus 90 ~aiAnefgiqGYPTIk~~kgd~----a~dYRG~ 118 (468)
T KOG4277|consen 90 PAIANEFGIQGYPTIKFFKGDH----AIDYRGG 118 (468)
T ss_pred hhhHhhhccCCCceEEEecCCe----eeecCCC
Confidence 4789999999999999987655 6889986
No 264
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=26.11 E-value=85 Score=25.20 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=30.5
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+..-+|.+| .+.+.||+||.....+..+.-.+++.++..
T Consensus 411 ~~TGD~~~~~~dg----~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 453 (539)
T PRK07008 411 FPTGDVATIDADG----FMQITDRSKDVIKSGGEWISSIDIENVAVA 453 (539)
T ss_pred cccCceEEEcCCC----cEEEeecccCEEEeCCeEEcHHHHHHHHHh
Confidence 4667777788888 589999999865555555555666666654
No 265
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=26.06 E-value=1.8e+02 Score=23.91 Aligned_cols=28 Identities=7% Similarity=-0.111 Sum_probs=24.2
Q ss_pred eEEEeChhHHHHHhCCcccceEEEEeCCC
Q 034203 12 LITLFQSQDVARDFGAACTPEFFLFKKDG 40 (101)
Q Consensus 12 pvl~D~~~~vA~~yga~~tP~~fliD~~G 40 (101)
+++.|.+|.+++.|+.. -...+||-+++
T Consensus 483 ~~~~d~~g~~~~~~~~~-~~~~~lvRPD~ 510 (538)
T PRK06183 483 DHDSDVDGALRAWLARH-GASAVLLRPDR 510 (538)
T ss_pred ceeecCCchHHHHHHhC-CCEEEEECCCE
Confidence 46789999999999975 46889999999
No 266
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=25.43 E-value=90 Score=16.90 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=22.1
Q ss_pred ChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCC
Q 034203 17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (101)
Q Consensus 17 ~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~id 53 (101)
+-.++.+.+........+|+|.+|+ +.|-++
T Consensus 17 ~l~~~~~~~~~~~~~~~~V~d~~~~------~~G~is 47 (57)
T PF00571_consen 17 SLEEALEIMRKNGISRLPVVDEDGK------LVGIIS 47 (57)
T ss_dssp BHHHHHHHHHHHTSSEEEEESTTSB------EEEEEE
T ss_pred cHHHHHHHHHHcCCcEEEEEecCCE------EEEEEE
Confidence 3355566666777889999999984 467764
No 267
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=25.41 E-value=90 Score=23.84 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.5
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-...-+|.+| .+.+.||.||.....+..+.-..++++|.+
T Consensus 322 ~~TGD~~~~~~dg----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 364 (436)
T TIGR01923 322 FNTGDIGELDGEG----FLYVLGRRDDLIISGGENIYPEEIETVLYQ 364 (436)
T ss_pred eeccceEEEcCCC----CEEEeccccCeEEeCCEeeCHHHHHHHHHh
Confidence 4577778888888 588999998865555555566777777654
No 268
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=25.40 E-value=87 Score=25.14 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=31.5
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+..-+|.+| .+.+.||.|+....++..+.-..++++|..
T Consensus 421 ~~TGD~~~~~~~g----~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~ 463 (547)
T PRK13295 421 FDTGDLARIDADG----YIRISGRSKDVIIRGGENIPVVEIEALLYR 463 (547)
T ss_pred eecceEEEEcCCc----eEEEEeccCCeEEECCEEECHHHHHHHHHh
Confidence 4577777888899 599999998865555555566777777665
No 269
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=25.38 E-value=88 Score=25.07 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=30.9
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
.|-+...+| +| .+.|.||.||.....+..+.-.++|.+|.+.
T Consensus 399 ~TGDl~~~~-~G----~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 440 (525)
T PRK05851 399 PTGDLGYLV-DG----GLVVCGRAKELITVAGRNIFPTEIERVAAQV 440 (525)
T ss_pred eccceEEEE-CC----EEEEEeecCCEEEECCEEeCHHHHHHHHHhC
Confidence 455555566 67 5899999998766666667778888887764
No 270
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=25.38 E-value=61 Score=24.41 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=30.1
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-...-+|.+| .+.+.||++|.....+..+.-.+++++|..
T Consensus 357 ~~TGDl~~~d~~g----~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~ 399 (408)
T TIGR01733 357 YRTGDLVRYLPDG----NLEFLGRIDDQVKIRGYRIELGEIEAALLR 399 (408)
T ss_pred EECCceEEEcCCC----CEEEeeccCCEEEeCeEEechHHHHHHHhc
Confidence 4566677788888 589999998865545555556677776653
No 271
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=25.35 E-value=1.2e+02 Score=25.79 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=37.5
Q ss_pred hhHHHHHh-----C--CcccceEEEEeCCCCCceeEEEeecCCCCCCC-CCCCCcHHHHHHHHH
Q 034203 18 SQDVARDF-----G--AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPS-NNLPVTGRDIRLAIE 73 (101)
Q Consensus 18 ~~~vA~~y-----g--a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~-~~~~~~~~~L~~AI~ 73 (101)
....+++| | --+|-+..-+|.+| .+.+.||.+|.... .++.+.-..+|+++.
T Consensus 520 pe~T~~~f~~d~~G~~W~~TGDig~~d~dG----~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~ 579 (696)
T PLN02387 520 QEKTDEVYKVDERGMRWFYTGDIGQFHPDG----CLEIIDRKKDIVKLQHGEYVSLGKVEAALS 579 (696)
T ss_pred HHHHhhhhccccCCCceeecCceEEECCCC----cEEEEEcccceEECCCCeEEchHHHHHHHh
Confidence 34566776 2 34688989999999 59999999887653 455666677777654
No 272
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=25.32 E-value=1.1e+02 Score=24.69 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=31.1
Q ss_pred CcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 27 a~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-..|-....+|.+| .+.+.||.|+.....+..+.-..++.++..
T Consensus 442 ~~~TGD~g~~~~~G----~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~ 485 (562)
T PRK12492 442 WFKTGDIAVIDPDG----FVRIVDRKKDLIIVSGFNVYPNEIEDVVMA 485 (562)
T ss_pred ceecCcEEEECCCC----eEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 35677788889999 589999998865544444555667766644
No 273
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=25.22 E-value=79 Score=25.38 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=32.0
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+..-+|.+| .+.+.||.++.....+..+.-.+++.+|.+
T Consensus 419 ~~TGD~~~~~~dG----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 461 (546)
T PLN02330 419 LHTGDIGYIDDDG----DIFIVDRIKELIKYKGFQVAPAELEAILLT 461 (546)
T ss_pred eecccEEEEeCCC----cEEEEechHHhhhcCCEEECHHHHHHHHHh
Confidence 4567777888889 588999988865555555666778877765
No 274
>PRK08316 acyl-CoA synthetase; Validated
Probab=24.96 E-value=80 Score=24.74 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=32.8
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-+...+|.+| .+.+.||.|+.....+..+.-..++..|.++
T Consensus 397 ~~TGDl~~~~~~g----~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~ 440 (523)
T PRK08316 397 FHSGDLGVMDEEG----YITVVDRKKDMIKTGGENVASREVEEALYTH 440 (523)
T ss_pred eeccceEEEcCCc----eEEEecccccEEEeCCeEECHHHHHHHHHhC
Confidence 4688888899999 5889999988755555555667777777553
No 275
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=24.90 E-value=38 Score=25.63 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.5
Q ss_pred eEEEEeCCCCCceeEEEeecC
Q 034203 32 EFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 32 ~~fliD~~G~~~v~~~Y~G~i 52 (101)
+.+++|+.| ..|||+|
T Consensus 182 ~kVvFDRgG-----y~YHGRV 197 (211)
T PTZ00032 182 SKVRFDRAH-----YKYAGKV 197 (211)
T ss_pred CEEEEeCCC-----CeehhHH
Confidence 458999988 7899997
No 276
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=24.35 E-value=2.1e+02 Score=18.60 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=37.5
Q ss_pred EEEeChhH--HHHHhCCcc--cceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034203 13 ITLFQSQD--VARDFGAAC--TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (101)
Q Consensus 13 vl~D~~~~--vA~~yga~~--tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~ 79 (101)
|..|.+.. +++.||... .|...+++.++ ...|.- .++ ..+...+.+-++..++|+
T Consensus 53 v~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~----~~Ky~~-~~~-------~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 53 LTADGDKFRHPLLHLGKTPADLPVIAIDSFRH----MYLFPD-FED-------VYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEechHhhhHHHHcCCCHhHCCEEEEEcchh----cCcCCC-Ccc-------ccCHHHHHHHHHHHhcCC
Confidence 55565543 899999886 89999999866 133432 222 235678888888888875
No 277
>PRK07798 acyl-CoA synthetase; Validated
Probab=24.29 E-value=1.1e+02 Score=24.07 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=30.7
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|-...-+|.+| .+.+.||.|+.....+..+.-.+++.+|.+
T Consensus 411 ~TGD~~~~~~~g----~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~ 452 (533)
T PRK07798 411 IPGDRARVEADG----TITLLGRGSVCINTGGEKVFPEEVEEALKA 452 (533)
T ss_pred EcCcEEEEcCCC----cEEEEccccceEecCCEEeCHHHHHHHHHh
Confidence 467778888999 588999998866555555556677776654
No 278
>PRK06060 acyl-CoA synthetase; Validated
Probab=24.08 E-value=87 Score=26.30 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=31.5
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.+|-+..-+|.+| .+.|.||.||.....+..+.-.+++.+|.+
T Consensus 367 ~~TGDl~~~~~dG----~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~ 409 (705)
T PRK06060 367 LDTRDRVCIDSDG----WVTYRCRADDTEVIGGVNVDPREVERLIIE 409 (705)
T ss_pred EECCeeEEECCCc----eEEEecccCceEEECCEEECHHHHHHHHHh
Confidence 4677777889999 599999999875555555556777776654
No 279
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=23.83 E-value=1.2e+02 Score=24.53 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=33.4
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-...-+|.+| .+.+.||.||....++..+.-..++++|..
T Consensus 447 ~~TGD~~~~~~~g----~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~ 489 (573)
T PRK05605 447 FRTGDVVVMEEDG----FIRIVDRIKELIITGGFNVYPAEVEEVLRE 489 (573)
T ss_pred cccCCEEEEcCCC----cEEEEeccccceeeCCEEECHHHHHHHHHh
Confidence 4677888889999 589999999876666666667788887765
No 280
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.83 E-value=35 Score=27.73 Aligned_cols=13 Identities=38% Similarity=1.101 Sum_probs=10.8
Q ss_pred CCCCcceeeeeCC
Q 034203 86 KPSVGCSIKWHPQ 98 (101)
Q Consensus 86 t~~~GC~I~~~~~ 98 (101)
-.+.||.|.|++|
T Consensus 245 ~~~~Gc~IdW~~g 257 (358)
T KOG1507|consen 245 EKCEGCEIDWKPG 257 (358)
T ss_pred EeeecCeeeccCC
Confidence 4678999999776
No 281
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=23.69 E-value=1.1e+02 Score=20.78 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCCCC--CCCCCCcceee
Q 034203 65 GRDIRLAIECVLSGQPVSS--NQKPSVGCSIK 94 (101)
Q Consensus 65 ~~~L~~AI~alLag~~v~~--~~t~~~GC~I~ 94 (101)
..+++..|+++++...|.. -.....||-.-
T Consensus 82 g~~~~~~l~~~fa~p~VayVHvr~a~~GCf~~ 113 (117)
T PF06718_consen 82 GADIEARLAELFADPEVAYVHVRNARNGCFAC 113 (117)
T ss_pred chhHHHHHHHHhcCCCceEEEeeccCCCeEEE
Confidence 4579999999999998874 44556788653
No 282
>PRK08308 acyl-CoA synthetase; Validated
Probab=23.61 E-value=91 Score=24.02 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=30.3
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|-+..-+|.+| .+.+.||.|+.....+..+.-..++.++.+
T Consensus 294 ~TGDl~~~~~dg----~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 335 (414)
T PRK08308 294 FTKDLGYKSERG----TLHFMGRMDDVINVSGLNVYPIEVEDVMLR 335 (414)
T ss_pred ECCceEEECCCc----cEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 466666678888 589999998876655555666777776655
No 283
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=23.61 E-value=90 Score=25.20 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=33.0
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
-.|-+..-+|.+| .+.+.||.+|.....+..+.-..++++|..+
T Consensus 435 ~~TGDlg~~~~~G----~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~ 478 (562)
T PRK05677 435 LKTGDIALIQEDG----YMRIVDRKKDMILVSGFNVYPNELEDVLAAL 478 (562)
T ss_pred ccccceEEECCCC----cEEEEecCcCeEEeCCEEECHHHHHHHHHhC
Confidence 4677778889999 5899999988655445556677888877654
No 284
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=23.31 E-value=1.6e+02 Score=24.89 Aligned_cols=52 Identities=12% Similarity=-0.095 Sum_probs=36.4
Q ss_pred hHHHHHh--CCcccceEEEEeCCCCCceeEEEeecCCCCCC-CCCCCCcHHHHHHHHHH
Q 034203 19 QDVARDF--GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 19 ~~vA~~y--ga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~-~~~~~~~~~~L~~AI~a 74 (101)
...+++| |--.|-+..-+|++| .+.+.||.+|... ..+..+.-..++.++.+
T Consensus 484 e~t~~~~~dGw~~TGDig~~d~dG----~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~ 538 (660)
T PLN02430 484 ELTEEVMKDGWFHTGDIGEILPNG----VLKIIDRKKNLIKLSQGEYVALEYLENVYGQ 538 (660)
T ss_pred HHhhhhhhccceeccceEEECCCC----cEEEEEcccccEEcCCCcEEchHHHHHHHhc
Confidence 3455555 445788888999999 5899999988765 24555666666665543
No 285
>PRK06178 acyl-CoA synthetase; Validated
Probab=23.02 E-value=1e+02 Score=24.74 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=32.1
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
-.|-+..-+|.+| .+.+.||.+|.....+..+.-.++++++..
T Consensus 444 ~~TGDl~~~~~~g----~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~ 486 (567)
T PRK06178 444 LHTGDIGKIDEQG----FLHYLGRRKEMLKVNGMSVFPSEVEALLGQ 486 (567)
T ss_pred eeecceEEEecCC----eEEEEecccccEEECCEEECHHHHHHHHHh
Confidence 3566777788888 589999999876655555666788887765
No 286
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.96 E-value=1.1e+02 Score=24.51 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=30.4
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|-...-+|.+| .+.+.|++||.....+..+.-.+++.+|..
T Consensus 417 ~TGDl~~~~~~g----~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~ 458 (545)
T PRK07768 417 DTGDLGYLTEEG----EVVVCGRVKDVIIMAGRNIYPTDIERAAAR 458 (545)
T ss_pred eccceEEEecCC----EEEEEccccceEEECCEecCHHHHHHHHHh
Confidence 455566778888 699999998865544555666788877765
No 287
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=22.91 E-value=2.2e+02 Score=18.32 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=29.6
Q ss_pred eeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 034203 44 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 98 (101)
Q Consensus 44 v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag~~v~~~~t~~~GC~I~~~~~ 98 (101)
++++|-|-|..-+.+ .+..+..+|.+.+..+..++-++... =.||+++.
T Consensus 3 iK~~~g~DiR~~~~~-~~~~t~~~L~~~v~~~F~~~~~~~~~-----flIKYkD~ 51 (81)
T cd06401 3 LKAQLGDDIRRIPIH-NEDITYDELLLMMQRVFRGKLGSSDD-----VLIKYKDE 51 (81)
T ss_pred EEEEeCCeEEEEecc-CccccHHHHHHHHHHHhccccCCccc-----EEEEEECC
Confidence 456665555432222 23357899999999988876543332 26777654
No 288
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=22.83 E-value=1.3e+02 Score=24.37 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.7
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
-.|-...-+|.+| .+.+.||.||.....+..+.-..++.+|.+.
T Consensus 434 ~~TGDl~~~~~~g----~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~ 477 (570)
T PRK04319 434 YVSGDSAYMDEDG----YFWFQGRVDDVIKTSGERVGPFEVESKLMEH 477 (570)
T ss_pred eEeCcEEEECCCe----eEEEEecCCCEEEECCEEECHHHHHHHHhhC
Confidence 3567777788999 6889999988655555556677888877764
No 289
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.52 E-value=1e+02 Score=24.95 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=30.9
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+...+|.+| .+.+.||.++.....+..+.-..++.+|.+
T Consensus 432 ~~TGD~~~~~~dg----~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~ 474 (576)
T PRK05620 432 LRTGDVGSVTRDG----FLTIHDRARDVIRSGGEWIYSAQLENYIMA 474 (576)
T ss_pred EecCceEEEcCCc----eEEEEechhhhhhcCCEEEcHHHHHHHHhc
Confidence 4677778889999 699999988765545544555667766654
No 290
>PLN02479 acetate-CoA ligase
Probab=22.51 E-value=1.2e+02 Score=24.62 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=30.9
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+..-+|++| .+.+.||.|+.....+..+.-.+++.++..
T Consensus 432 ~~TGDl~~~~~~g----~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 474 (567)
T PLN02479 432 FHSGDLGVKHPDG----YIEIKDRSKDIIISGGENISSLEVENVVYT 474 (567)
T ss_pred eecceeEEEcCCc----cEEEeccccceEEeCCEEEcHHHHHHHHHh
Confidence 4566666788899 589999998865555555666777777654
No 291
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=22.50 E-value=2e+02 Score=20.07 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=20.9
Q ss_pred ChhHHHHHhCCc--ccceEEEEeCCCCCceeEEE
Q 034203 17 QSQDVARDFGAA--CTPEFFLFKKDGRRPFQLVY 48 (101)
Q Consensus 17 ~~~~vA~~yga~--~tP~~fliD~~G~~~v~~~Y 48 (101)
.+.++|++||+. .-|..+|+-.+... -+.|
T Consensus 69 ~N~~Laery~i~ke~fPv~~LF~~~~~~--pv~~ 100 (126)
T PF07912_consen 69 ENMELAERYKIDKEDFPVIYLFVGDKEE--PVRY 100 (126)
T ss_dssp CCHHHHHHTT-SCCC-SEEEEEESSTTS--EEEE
T ss_pred hHHHHHHHhCCCcccCCEEEEecCCCCC--CccC
Confidence 457899999985 46999999955542 3666
No 292
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=22.48 E-value=27 Score=25.63 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccee
Q 034203 67 DIRLAIECVLSGQPVSSNQKPSVGCSI 93 (101)
Q Consensus 67 ~L~~AI~alLag~~v~~~~t~~~GC~I 93 (101)
.++++++.|++..+....+.=.+|||-
T Consensus 2 q~~~~~~El~~~a~l~~g~i~VvGcST 28 (172)
T PF04260_consen 2 QLRQALEELLEQANLKPGQIFVVGCST 28 (172)
T ss_dssp -HHHHHHHHHHHS---TT-EEEEEE-H
T ss_pred hHHHHHHHHHHhcCCCCCCEEEEeeeH
Confidence 578899999999999999999999985
No 293
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=22.41 E-value=91 Score=24.92 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=32.2
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
..|-+..-+|.+| .+.+.||.|+.....+..+.-..++.+|.+
T Consensus 419 ~~TGD~~~~~~~g----~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~ 461 (538)
T TIGR03208 419 FDTGDLAFQDAEG----YIRINGRSKDVIIRGGENIPVVEIENLLYQ 461 (538)
T ss_pred eeccceEEECCCC----cEEEEeccCceEEECCEEECHHHHHHHHhc
Confidence 4677788888999 589999988765555555666778887765
No 294
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.27 E-value=91 Score=25.09 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=31.9
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-+...+|.+| .+.+.||.||....++..+.-..++++|.+.
T Consensus 433 ~~TGD~~~~~~~g----~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~ 476 (563)
T PRK06710 433 LHTGDVGYMDEDG----FFYVKDRKKDMIVASGFNVYPREVEEVLYEH 476 (563)
T ss_pred ccccceEEEcCCC----cEEEeeccccEEEECCEEECHHHHHHHHHhC
Confidence 4577777788888 5899999988655455455567788877654
No 295
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=22.11 E-value=98 Score=18.56 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=9.7
Q ss_pred cccceEEEEeC
Q 034203 28 ACTPEFFLFKK 38 (101)
Q Consensus 28 ~~tP~~fliD~ 38 (101)
..+|+.+++|+
T Consensus 72 ~~~P~~~~ldp 82 (82)
T PF13899_consen 72 QGYPTFFFLDP 82 (82)
T ss_dssp CSSSEEEEEET
T ss_pred ccCCEEEEeCC
Confidence 66999999996
No 296
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=21.81 E-value=1e+02 Score=17.22 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.2
Q ss_pred HHHHHhCCcccceEEE
Q 034203 20 DVARDFGAACTPEFFL 35 (101)
Q Consensus 20 ~vA~~yga~~tP~~fl 35 (101)
++.+..|....|+.|+
T Consensus 40 ~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 40 ELKELSGVRTVPQVFI 55 (60)
T ss_dssp HHHHHHSSSSSSEEEE
T ss_pred HHHHHcCCCccCEEEE
Confidence 3444459999999997
No 297
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=21.52 E-value=1.1e+02 Score=23.02 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=29.8
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-+..-+ .+| .+.+.||.||.....+..+.-..++.+|.+.
T Consensus 236 ~~TGDl~~~-~~g----~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 278 (358)
T PRK07824 236 FRTDDLGAL-DDG----VLTVLGRADDAISTGGLTVLPQVVEAALATH 278 (358)
T ss_pred eecccEEEE-eCC----EEEEEeccCCeEEECCEEECHHHHHHHHHhC
Confidence 356665556 567 5899999998766555556667777777653
No 298
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=21.42 E-value=1e+02 Score=24.49 Aligned_cols=44 Identities=7% Similarity=0.030 Sum_probs=32.5
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~al 75 (101)
..|-+..-+|.+| .+.+.||.||.....+..+.-.+++++|..+
T Consensus 418 ~~TGDl~~~~~~g----~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~ 461 (546)
T PRK08314 418 FRTGDLGRMDEEG----YFFITDRLKRMINASGFKVWPAEVENLLYKH 461 (546)
T ss_pred EecCCEEEEcCCC----cEEEEecchhhEEeCCEEECHHHHHHHHHhC
Confidence 4677777788888 5899999998765555556667888877653
No 299
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=21.37 E-value=74 Score=21.93 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=14.7
Q ss_pred cceEEEEeCCCCCceeEEEeecC
Q 034203 30 TPEFFLFKKDGRRPFQLVYHGQF 52 (101)
Q Consensus 30 tP~~fliD~~G~~~v~~~Y~G~i 52 (101)
.+-.|+|+++| .+|.|+-
T Consensus 63 IgYhflI~~dG-----~IyeGR~ 80 (142)
T smart00701 63 IGYNFLVGGDG-----KVYEGRG 80 (142)
T ss_pred cCCeEEEcCCC-----EEEECCC
Confidence 68899999999 4677773
No 300
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=2.9e+02 Score=21.71 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=36.7
Q ss_pred EEEeChhHHHHHhCCcccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034203 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (101)
Q Consensus 13 vl~D~~~~vA~~yga~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~alLag 78 (101)
|--|.++.+.+.|+++..|+..++.+..+ .+-|+|.. +...+...+...+..
T Consensus 85 vd~~~~~~~~~~y~i~gfPtl~~f~~~~~---~~~~~~~~-----------~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 85 VDCDEHKDLCEKYGIQGFPTLKVFRPGKK---PIDYSGPR-----------NAESLAEFLIKELEP 136 (383)
T ss_pred eCchhhHHHHHhcCCccCcEEEEEcCCCc---eeeccCcc-----------cHHHHHHHHHHhhcc
Confidence 33467889999999999999999999833 57777732 234555555555444
No 301
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=20.70 E-value=92 Score=27.93 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=31.6
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.+|-+..-+|.+| .+.|.||.|+.....+..+.-.+++.+|.+
T Consensus 839 y~TGDl~~~~~~G----~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~ 881 (1296)
T PRK10252 839 YRTGDVARWLDDG----AVEYLGRSDDQLKIRGQRIELGEIDRAMQA 881 (1296)
T ss_pred EecCceEEEcCCC----cEEEecccCCeEEEeeEEecHHHHHHHHHh
Confidence 3466666788888 599999999876655555666777777765
No 302
>PRK05857 acyl-CoA synthetase; Validated
Probab=20.61 E-value=1.3e+02 Score=24.18 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=31.2
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.+|-+..-+|.+| .+.+.||.|+.....+..+.-.+++.++..
T Consensus 404 ~~TGDlg~~d~~g----~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 446 (540)
T PRK05857 404 VNTGDLLERREDG----FFYIKGRSSEMIICGGVNIAPDEVDRIAEG 446 (540)
T ss_pred eeccceEEEcCCc----eEEEeccccccEecCCEEECHHHHHHHHHh
Confidence 4577778889999 589999998876655555556666666654
No 303
>PHA00447 lysozyme
Probab=20.25 E-value=81 Score=21.84 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=16.7
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCC
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDD 54 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd 54 (101)
.-..-.|+|+++| .+|.|+-.+
T Consensus 41 ~dIgYhf~I~~dG-----~I~eGR~~~ 62 (142)
T PHA00447 41 LDVGYHFIIRRDG-----TVEEGRPED 62 (142)
T ss_pred CCcCeEEEECCCC-----EEEECCCCC
Confidence 3588899999999 567777443
No 304
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=20.15 E-value=1.3e+02 Score=23.43 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=29.5
Q ss_pred cccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 28 ~~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.+|-....+|.+| .+.+.||+|+....++..+.-..+++.+.+
T Consensus 397 ~~tGD~~~~~~~g----~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~ 439 (521)
T PRK06187 397 LHTGDVGYIDEDG----YLYITDRIKDVIISGGENIYPRELEDALYG 439 (521)
T ss_pred eeccceEEEcCCC----CEEEeecccceEEcCCeEECHHHHHHHHHh
Confidence 4677778888899 588899998865444444455566665544
No 305
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=20.10 E-value=1.9e+02 Score=23.82 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.5
Q ss_pred ccceEEEEeCCCCCceeEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 034203 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (101)
Q Consensus 29 ~tP~~fliD~~G~~~v~~~Y~G~idd~~~~~~~~~~~~~L~~AI~a 74 (101)
.|-....++ +| .+.+.||.||.....+..+.-.++|++|.+
T Consensus 479 ~TGDlg~~~-dG----~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~ 519 (612)
T PRK12476 479 RTGDLGVYL-DG----ELYITGRIADLIVIDGRNHYPQDIEATVAE 519 (612)
T ss_pred eccccceeE-CC----EEEEEeccCcEEEECCcccCHHHHHHHHHH
Confidence 445554455 88 599999999876666666777888887753
Done!