BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034205
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
Length = 113
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQ-DPEGKEMEKALMRMG 60
+ + + +E VVI+SK+ C C V LF+ LGV P+V E+DQ P+G +++K L R+
Sbjct: 10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69
Query: 61 CNAPVPAVFISGQLVGSTNEVMSLHLSGNL 90
VP VF+ G+ +G + + L+ G+L
Sbjct: 70 GQHTVPNVFVCGKHIGGCTDTVKLNRKGDL 99
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG 60
++++ S+ VVIFSK+SC C LF ++ V+ V E+D G + + AL +M
Sbjct: 25 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 84
Query: 61 CNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLL 94
VP +F++G +G + LH G L+PL+
Sbjct: 85 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 118
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG 60
++++ S+ VVIFSK+SC C LF ++ V+ V E+D G + + AL +M
Sbjct: 39 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 98
Query: 61 CNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLL 94
VP +F++G +G + LH G L+PL+
Sbjct: 99 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 132
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG 60
++++ S+ VVIFSK+SC C LF ++ V+ V E+D G + + AL +M
Sbjct: 17 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 76
Query: 61 CNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLL 94
VP +F++G +G + LH G L+PL+
Sbjct: 77 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 110
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQ-DPEGKEMEKALMRMG 60
D V + +E VV++SK+ C V LF+ L V P+V E+D+ +G +++K L R+
Sbjct: 9 DAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLT 68
Query: 61 CNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLL 94
VP VFI G+ +G + + L+ G L PLL
Sbjct: 69 GQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 102
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 1 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG 60
+ K LAS VV+FSK+ C C V L ++G V E+D+ +G +++ AL
Sbjct: 10 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 69
Query: 61 CNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 95
VP VFI G+ +G + V+ H L+PLL+
Sbjct: 70 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 1 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG 60
+ K LAS VV+FSK+ C C V L ++G V E+D+ +G +++ AL
Sbjct: 11 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 70
Query: 61 CNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 95
VP VFI G+ +G + V+ H L+PLL+
Sbjct: 71 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 105
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 4 VTRLASEKGVVIFSKSSCCLCYA-VNILFQELGV---HPMVYEIDQDPEGKEMEKALMRM 59
V L +K V + +K+ C C A ++ LFQEL V +V E+D+ G E++ AL +
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 69
Query: 60 GCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKP 96
VP V+I+G+ +G +++ +L +G L +LKP
Sbjct: 70 SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKP 106
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 4 VTRLASEKGVVIFSKSSCCLCYA-VNILFQELGV---HPMVYEIDQDPEGKEMEKALMRM 59
V L +K V + +K+ C C A ++ LFQEL V +V E+D+ G E++ AL +
Sbjct: 30 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 89
Query: 60 GCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKP 96
VP V+I+G+ +G +++ +L +G L +LKP
Sbjct: 90 SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKP 126
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 4 VTRLASEKGVVIFSKSSCCLCYA-VNILFQELGV---HPMVYEIDQDPEGKEMEKALMRM 59
V L +K V + +K+ C A ++ LFQEL V +V E+D+ G E++ AL +
Sbjct: 13 VKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 72
Query: 60 GCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKP 96
VP V+I+G+ +G +++ +L +G L +LKP
Sbjct: 73 SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKP 109
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 7 LASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVP 66
L VVIFSKS C V LF LGV V E+DQ +G +++ L + VP
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 72
Query: 67 AVFISGQLVGSTNEVMSLHLSGNLIPLLKP 96
+F++ VG ++ + SG L LL+
Sbjct: 73 NIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin
Glutatione Reductase From Schistosoma Mansoni In
Complex With Auranofin
Length = 598
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS 71
V++FSK++C C V + E + E+DQ G ++K L VP +F+
Sbjct: 19 AVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVR 78
Query: 72 GQLVGSTNEVMSLHLSGNL 90
G+ +G + V+ + + L
Sbjct: 79 GKFIGDSQTVLKYYSNDEL 97
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS 71
V++FSK++C C V + E + E+DQ G ++K L VP +F+
Sbjct: 19 AVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVR 78
Query: 72 GQLVGSTNEVMSLHLSGNL 90
G+ +G + V+ + + L
Sbjct: 79 GKFIGDSQTVLKYYSNDEL 97
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Nadph
Length = 598
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS 71
V++FSK++C C V + E + E+DQ G ++K L VP +F+
Sbjct: 19 AVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVR 78
Query: 72 GQLVGSTNEVMSLHLSGNL 90
G+ +G + V+ + + L
Sbjct: 79 GKFIGDSQTVLKYYSNDEL 97
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72
V I++K +C C+ L GV E+ D + E+ + R G VP +FI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVS--FQELPIDGNAAKREEMIKRSG-RTTVPQIFIDA 59
Query: 73 QLVGSTNEVMSLHLSGNLIPLLK 95
Q +G +++ +L G L PLLK
Sbjct: 60 QHIGGYDDLYALDARGGLDPLLK 82
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 4 VTRLASEKGVVIFSKSSCCLCYA-VNILFQELGV---HPMVYEIDQDPEGKEMEKALMRM 59
V L +E + + SK+ C C+A +N LF++L V +V +++ EG +++ AL +
Sbjct: 18 VKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 77
Query: 60 GCNAPVPAVFISGQLVGSTNEV 81
VP ++I+G+ +G +++
Sbjct: 78 NGQRTVPNIYINGKHIGGNDDL 99
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 13 VVIFSKSSCCLCYAVNILFQ-ELGVHPMVY--EIDQDPEGKEMEKALMRMGCNAPVPAVF 69
++IFSKS+C L + E P Y E+D+ G+E+++ + + VP +
Sbjct: 16 IIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLL 75
Query: 70 ISGQLVGSTNEVMSLHLSGNLIPLLKPY 97
++G G E+ LH G L+ L+ +
Sbjct: 76 VNGVSRGGNEEIKKLHTQGKLLESLQVW 103
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72
V I++K +C + L GV E+ D + E+ + R G VP +FI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVS--FQELPIDGNAAKREEMIKRSG-RTTVPQIFIDA 59
Query: 73 QLVGSTNEVMSLHLSGNLIPLLK 95
Q +G +++ +L G L PLLK
Sbjct: 60 QHIGGYDDLYALDARGGLDPLLK 82
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 4 VTRLASEKGVVIFSKSSCCLCYA-VNILFQELGV---HPMVYEIDQDPEGKEMEKALMRM 59
V L +E + + SK+ C +A +N LF++L V +V +++ EG +++ AL +
Sbjct: 10 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 69
Query: 60 GCNAPVPAVFISGQLVGSTNEV 81
VP ++I+G+ +G +++
Sbjct: 70 NGQRTVPNIYINGKHIGGNDDL 91
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 4 VTRLASEKGVVIFSKSSCCLCYA-VNILFQELGV---HPMVYEIDQDPEGKEMEKALMRM 59
V L +E + + SK+ C +A +N LF++L V +V +++ EG +++ AL +
Sbjct: 254 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 313
Query: 60 GCNAPVPAVFISGQLVGSTNEV 81
VP ++I+G+ +G +++
Sbjct: 314 NGQRTVPNIYINGKHIGGNDDL 335
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYE---IDQDPEGKEMEKALMRMGCNAPVPAVF 69
VV+F K +C C L +L + E I + E++ L ++ VP VF
Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF 73
Query: 70 ISGQLVGSTNEVMSLHLSGNLIPLLK 95
I + +G ++ S+H G L+ L+
Sbjct: 74 IGKECIGGCTDLESMHKRGELLTRLQ 99
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 2 DKVTRLASEKGVVIFSK-----SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKAL 56
+++ L ++ V++F K + C + + GV ++I +D E ++ KA
Sbjct: 8 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAY 67
Query: 57 MRMGCNAPV-PAVFISGQLVGSTNEVMSLHLSGNLIPLLK 95
N P P +++ G+LVG + V L +G L+P+L+
Sbjct: 68 ----SNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72
+ I++ S+C C L + GV Y ID D + E R +P +FI
Sbjct: 18 IEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGD--NEAREAMAARANGKRSLPQIFIDD 75
Query: 73 QLVGSTNEVMSLHLSGNLIPLL 94
Q +G +++ +L +G L PLL
Sbjct: 76 QHIGGCDDIYALDGAGKLDPLL 97
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 7 LASEKGVVIFSKSS-----CCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGC 61
L ++ V++F K + C + + GV ++I +D E ++ K
Sbjct: 11 LTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTF----S 66
Query: 62 NAPV-PAVFISGQLVGSTNEVMSLHLSGNLIPLLK 95
N P P +++ G LVG + V L +G L+P+LK
Sbjct: 67 NWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGK-EMEKALMRMGCNAPVPAVFIS 71
V+I+++ C C L G + PE + EM++ R G N P +FI
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQE---RSGRNT-FPQIFIG 63
Query: 72 GQLVGSTNEVMSLHLSGNLIPLLK 95
VG +++ +L G L LLK
Sbjct: 64 SVHVGGCDDLYALEDEGKLDSLLK 87
>pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain
Length = 627
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 25 YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG 60
YAV +LF + HP++ E+D P +EKAL G
Sbjct: 58 YAVRVLFPGIEAHPVLKELDTPP---NVEKALRLFG 90
>pdb|1PLA|A Chain A, High-Resolution Solution Structure Of Reduced Parsley
Plastocyanin
pdb|1PLB|A Chain A, High-Resolution Solution Structure Of Reduced Parsley
Plastocyanin
Length = 97
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 6 RLASEKGVVIFSKSSCCLCYAVNILFQELGV--HPMVYEIDQDPEGKEMEK 54
+L S+ G ++FS SS + I F+ H +V++ D+ P G EK
Sbjct: 4 KLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVFDEDEVPAGVNAEK 54
>pdb|1H75|A Chain A, Structural Basis For The Thioredoxin-Like Activity
Profile Of The Glutaredoxin-Like Protein Nrdh-Redoxin
From Escherichia Coli
Length = 81
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKA 55
+ I++++ C C+A + G + +D+ PE E +A
Sbjct: 3 ITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA 45
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 1 MDKVTRLASEKGVVIFSKSS-----CCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKA 55
++K+ R +E ++++ K S C G +I Q+P+ + A
Sbjct: 5 IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIR----A 60
Query: 56 LMRMGCNAPV-PAVFISGQLVGSTNEVMSLHLSGNLIPLLK 95
+ N P P +++ G+LVG + V+ ++ G L L+K
Sbjct: 61 ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 101
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 1 MDKVTRLASEKGVVIFSKSS-----CCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKA 55
++K+ R +E ++++ K S C G +I Q+P+ +A
Sbjct: 25 IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPD----IRA 80
Query: 56 LMRMGCNAPV-PAVFISGQLVGSTNEVMSLHLSGNLIPLLK 95
+ N P P +++ G+LVG + V+ ++ G L L+K
Sbjct: 81 ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp.
pdb|3U9I|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp
Length = 393
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 30 LFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVP 66
L LGVH +V + + P K+ E+ L R+ VP
Sbjct: 236 LLDMLGVHGIVPALFEQPVAKDDEEGLRRLTATRRVP 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,814,038
Number of Sequences: 62578
Number of extensions: 98438
Number of successful extensions: 197
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 32
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)