Query 034205
Match_columns 101
No_of_seqs 182 out of 1048
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 3.5E-36 7.7E-41 177.3 10.4 97 4-100 1-97 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 6.8E-35 1.5E-39 174.1 11.5 99 2-100 4-105 (108)
3 KOG1752 Glutaredoxin and relat 100.0 2.5E-34 5.4E-39 169.8 10.8 100 2-101 5-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 7E-34 1.5E-38 170.8 8.5 96 2-100 6-106 (115)
5 TIGR00365 monothiol glutaredox 100.0 2E-31 4.4E-36 156.5 9.8 90 2-94 3-97 (97)
6 cd03028 GRX_PICOT_like Glutare 100.0 3.2E-29 6.8E-34 145.4 10.3 85 4-91 1-90 (90)
7 PRK10638 glutaredoxin 3; Provi 100.0 1.1E-27 2.4E-32 136.9 9.6 83 10-95 1-83 (83)
8 PTZ00062 glutaredoxin; Provisi 100.0 6.9E-28 1.5E-32 157.5 9.7 92 2-96 104-200 (204)
9 TIGR02180 GRX_euk Glutaredoxin 99.9 5.6E-27 1.2E-31 133.5 10.0 82 13-94 1-84 (84)
10 TIGR02181 GRX_bact Glutaredoxi 99.9 3E-27 6.5E-32 133.8 8.5 79 13-94 1-79 (79)
11 cd03419 GRX_GRXh_1_2_like Glut 99.9 2.7E-26 5.8E-31 130.3 10.4 82 12-93 1-82 (82)
12 COG0278 Glutaredoxin-related p 99.9 8.2E-27 1.8E-31 134.7 7.7 94 2-98 6-105 (105)
13 COG0695 GrxC Glutaredoxin and 99.9 5.6E-26 1.2E-30 129.1 9.7 79 12-91 2-80 (80)
14 cd03031 GRX_GRX_like Glutaredo 99.9 1.6E-25 3.4E-30 139.8 8.7 83 12-97 1-93 (147)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 7E-25 1.5E-29 122.7 9.9 74 12-88 1-75 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.9 1.7E-24 3.7E-29 120.9 7.9 71 12-85 2-72 (73)
17 TIGR02190 GlrX-dom Glutaredoxi 99.9 2.8E-24 6E-29 121.8 8.5 75 7-85 4-78 (79)
18 cd03029 GRX_hybridPRX5 Glutare 99.9 6.7E-24 1.4E-28 118.2 8.6 70 12-85 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.9 7.3E-24 1.6E-28 150.8 10.1 90 10-101 1-95 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.9 4.1E-23 8.9E-28 118.8 8.3 73 13-88 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.9 1.1E-22 2.4E-27 116.6 8.4 73 12-87 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.9 1.1E-21 2.3E-26 107.9 8.2 71 12-85 1-71 (72)
23 KOG0911 Glutaredoxin-related p 99.9 1.5E-21 3.3E-26 127.4 8.2 92 3-97 131-227 (227)
24 cd03030 GRX_SH3BGR Glutaredoxi 99.8 9.4E-21 2E-25 110.0 8.0 80 13-95 2-91 (92)
25 PF00462 Glutaredoxin: Glutare 99.8 5.8E-21 1.3E-25 102.8 6.6 60 13-75 1-60 (60)
26 TIGR02194 GlrX_NrdH Glutaredox 99.8 2.7E-19 5.9E-24 99.6 6.4 63 13-79 1-64 (72)
27 PRK10329 glutaredoxin-like pro 99.8 5.1E-19 1.1E-23 100.7 7.3 64 12-79 2-65 (81)
28 TIGR02196 GlrX_YruB Glutaredox 99.7 1.8E-16 4E-21 87.3 6.9 65 12-79 1-65 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.7 9.5E-16 2.1E-20 84.3 7.5 66 12-80 1-66 (73)
30 TIGR02200 GlrX_actino Glutared 99.6 1.5E-15 3.3E-20 84.6 6.1 65 12-79 1-67 (77)
31 KOG2824 Glutaredoxin-related p 99.6 2.8E-15 6E-20 100.6 6.7 87 11-97 131-224 (281)
32 cd02973 TRX_GRX_like Thioredox 99.6 5.3E-15 1.1E-19 80.8 6.2 58 12-76 2-64 (67)
33 PF04908 SH3BGR: SH3-binding, 99.5 4.1E-13 8.8E-18 78.8 7.4 81 12-95 2-97 (99)
34 cd03041 GST_N_2GST_N GST_N fam 99.4 5.8E-12 1.3E-16 70.7 8.4 71 13-86 2-74 (77)
35 cd00570 GST_N_family Glutathio 99.4 7.1E-12 1.5E-16 67.6 8.3 68 14-84 2-69 (71)
36 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 3.7E-12 8.1E-17 73.6 6.6 68 2-76 5-77 (89)
37 cd03037 GST_N_GRX2 GST_N famil 99.3 1.7E-11 3.7E-16 67.5 7.8 68 14-86 2-70 (71)
38 cd03040 GST_N_mPGES2 GST_N fam 99.3 3.6E-11 7.8E-16 67.2 8.8 69 12-86 1-73 (77)
39 TIGR00411 redox_disulf_1 small 99.3 3.9E-11 8.4E-16 67.4 7.8 61 12-77 2-67 (82)
40 cd03060 GST_N_Omega_like GST_N 99.3 9.7E-11 2.1E-15 64.6 9.1 67 14-84 2-69 (71)
41 cd03059 GST_N_SspA GST_N famil 99.2 1.8E-10 4E-15 63.4 8.9 70 13-86 1-70 (73)
42 cd03055 GST_N_Omega GST_N fami 99.2 5.5E-10 1.2E-14 64.3 9.3 71 10-84 16-87 (89)
43 TIGR01295 PedC_BrcD bacterioci 99.2 1.9E-10 4E-15 70.0 7.7 76 3-78 15-106 (122)
44 TIGR00412 redox_disulf_2 small 99.2 1.8E-10 4E-15 64.5 7.0 54 13-75 3-60 (76)
45 cd03051 GST_N_GTT2_like GST_N 99.2 2.8E-10 6.1E-15 62.6 7.0 71 13-84 1-72 (74)
46 PHA02125 thioredoxin-like prot 99.1 2.1E-10 4.6E-15 64.0 6.3 55 13-75 2-56 (75)
47 PF13417 GST_N_3: Glutathione 99.1 1E-09 2.2E-14 61.1 8.2 68 15-86 1-68 (75)
48 cd03045 GST_N_Delta_Epsilon GS 99.1 1.1E-09 2.3E-14 60.5 8.2 72 13-85 1-72 (74)
49 cd03036 ArsC_like Arsenate Red 99.1 1.5E-10 3.3E-15 69.3 4.4 45 13-57 1-46 (111)
50 cd02975 PfPDO_like_N Pyrococcu 99.1 1.2E-09 2.7E-14 65.5 7.2 60 4-70 16-81 (113)
51 cd03056 GST_N_4 GST_N family, 99.0 2.8E-09 6.1E-14 58.5 7.9 71 13-84 1-71 (73)
52 cd02977 ArsC_family Arsenate R 99.0 1.1E-09 2.3E-14 64.8 6.3 44 13-56 1-45 (105)
53 PF05768 DUF836: Glutaredoxin- 99.0 4.4E-09 9.6E-14 59.6 7.6 53 12-72 1-57 (81)
54 PHA02278 thioredoxin-like prot 99.0 5.9E-09 1.3E-13 61.7 8.3 71 2-75 5-85 (103)
55 PRK01655 spxA transcriptional 98.9 4.3E-09 9.3E-14 64.8 6.5 37 13-49 2-38 (131)
56 cd02954 DIM1 Dim1 family; Dim1 98.9 1.1E-08 2.3E-13 61.6 7.1 67 3-76 4-82 (114)
57 cd03061 GST_N_CLIC GST_N famil 98.9 2.3E-08 5E-13 57.9 8.2 64 19-86 20-83 (91)
58 cd03052 GST_N_GDAP1 GST_N fami 98.9 2.2E-08 4.9E-13 55.5 7.7 71 13-84 1-71 (73)
59 TIGR01617 arsC_related transcr 98.9 6E-09 1.3E-13 62.9 5.7 45 13-57 1-46 (117)
60 cd03053 GST_N_Phi GST_N family 98.9 5.1E-08 1.1E-12 54.0 8.7 73 13-86 2-74 (76)
61 TIGR02187 GlrX_arch Glutaredox 98.9 9E-09 2E-13 67.9 6.3 56 11-73 135-195 (215)
62 cd03058 GST_N_Tau GST_N family 98.9 6.9E-08 1.5E-12 53.3 9.0 70 13-86 1-71 (74)
63 cd03054 GST_N_Metaxin GST_N fa 98.9 3.8E-08 8.3E-13 54.2 7.8 56 20-86 15-70 (72)
64 PRK12559 transcriptional regul 98.8 2.2E-08 4.7E-13 61.7 7.0 45 13-57 2-47 (131)
65 PRK13344 spxA transcriptional 98.8 2E-08 4.3E-13 61.9 6.6 44 13-56 2-46 (132)
66 cd03032 ArsC_Spx Arsenate Redu 98.8 2.2E-08 4.7E-13 60.3 6.4 45 13-57 2-47 (115)
67 PRK15317 alkyl hydroperoxide r 98.8 1.5E-08 3.2E-13 74.4 6.4 68 2-76 109-181 (517)
68 cd02953 DsbDgamma DsbD gamma f 98.8 6.5E-08 1.4E-12 56.7 7.9 67 2-69 2-77 (104)
69 cd03035 ArsC_Yffb Arsenate Red 98.8 2.4E-08 5.3E-13 59.2 6.0 46 13-58 1-47 (105)
70 cd02989 Phd_like_TxnDC9 Phosdu 98.8 8.1E-08 1.8E-12 57.6 8.0 71 3-78 14-91 (113)
71 cd03049 GST_N_3 GST_N family, 98.7 1.4E-07 3.1E-12 51.9 8.0 67 14-84 2-71 (73)
72 TIGR03140 AhpF alkyl hydropero 98.7 8.3E-09 1.8E-13 75.7 3.8 69 2-77 110-183 (515)
73 cd03076 GST_N_Pi GST_N family, 98.7 2.6E-07 5.5E-12 51.1 8.9 70 12-85 1-70 (73)
74 KOG0910 Thioredoxin-like prote 98.7 8.7E-09 1.9E-13 64.3 3.2 56 13-75 65-128 (150)
75 PF13192 Thioredoxin_3: Thiore 98.7 2.3E-08 5E-13 55.9 4.5 54 12-74 2-59 (76)
76 cd02994 PDI_a_TMX PDIa family, 98.7 9.1E-08 2E-12 55.7 6.6 66 3-73 10-82 (101)
77 cd03042 GST_N_Zeta GST_N famil 98.7 1.7E-07 3.6E-12 51.4 7.2 70 14-84 2-71 (73)
78 TIGR03143 AhpF_homolog putativ 98.7 4.6E-08 9.9E-13 72.5 6.1 65 3-74 470-539 (555)
79 cd02986 DLP Dim1 family, Dim1- 98.7 1.3E-07 2.8E-12 56.8 6.7 55 14-75 19-81 (114)
80 cd02947 TRX_family TRX family; 98.7 2.8E-07 6.2E-12 51.6 7.8 57 12-75 13-76 (93)
81 PF13409 GST_N_2: Glutathione 98.7 1E-07 2.2E-12 52.4 5.6 67 20-86 1-68 (70)
82 cd02985 TRX_CDSP32 TRX family, 98.7 2.1E-07 4.5E-12 54.7 7.2 70 2-75 4-84 (103)
83 TIGR02187 GlrX_arch Glutaredox 98.6 1.4E-07 3E-12 62.3 7.0 66 5-75 15-90 (215)
84 cd03033 ArsC_15kD Arsenate Red 98.6 1.6E-07 3.5E-12 56.4 6.6 46 12-57 1-47 (113)
85 COG4545 Glutaredoxin-related p 98.6 9.8E-08 2.1E-12 52.9 5.1 67 14-81 5-81 (85)
86 cd03080 GST_N_Metaxin_like GST 98.6 6.2E-07 1.3E-11 49.8 8.1 63 13-86 2-71 (75)
87 cd02949 TRX_NTR TRX domain, no 98.6 2E-07 4.3E-12 54.1 6.3 60 13-77 17-82 (97)
88 cd03039 GST_N_Sigma_like GST_N 98.6 5E-07 1.1E-11 49.6 7.3 69 14-85 2-70 (72)
89 cd03038 GST_N_etherase_LigE GS 98.6 4E-07 8.7E-12 51.5 6.9 66 19-86 14-80 (84)
90 PTZ00051 thioredoxin; Provisio 98.6 5.1E-07 1.1E-11 52.1 7.4 71 3-78 10-87 (98)
91 PRK09481 sspA stringent starva 98.6 1.1E-06 2.4E-11 57.6 9.3 70 12-85 10-79 (211)
92 cd03050 GST_N_Theta GST_N fami 98.6 1.4E-06 3.1E-11 48.2 8.3 72 13-85 1-72 (76)
93 cd03048 GST_N_Ure2p_like GST_N 98.5 1.9E-06 4.2E-11 48.3 8.9 72 13-86 2-76 (81)
94 cd02948 TRX_NDPK TRX domain, T 98.5 1.4E-06 3.1E-11 51.0 8.7 66 3-74 9-83 (102)
95 cd03003 PDI_a_ERdj5_N PDIa fam 98.5 4.8E-07 1E-11 52.7 6.5 67 3-74 10-84 (101)
96 cd02951 SoxW SoxW family; SoxW 98.5 7.3E-07 1.6E-11 53.9 7.5 70 3-72 5-93 (125)
97 cd02996 PDI_a_ERp44 PDIa famil 98.5 5E-07 1.1E-11 53.3 6.5 66 3-73 10-89 (108)
98 TIGR02182 GRXB Glutaredoxin, G 98.5 6.5E-07 1.4E-11 58.8 7.6 69 14-87 1-70 (209)
99 KOG3029 Glutathione S-transfer 98.5 6.4E-07 1.4E-11 61.3 7.6 68 12-85 90-157 (370)
100 COG3118 Thioredoxin domain-con 98.5 2.9E-07 6.2E-12 63.2 5.5 60 13-79 47-114 (304)
101 cd02962 TMX2 TMX2 family; comp 98.5 8.1E-07 1.8E-11 56.0 7.2 58 13-77 51-123 (152)
102 cd02984 TRX_PICOT TRX domain, 98.5 9.8E-07 2.1E-11 50.8 7.1 68 3-75 4-81 (97)
103 PRK10387 glutaredoxin 2; Provi 98.5 9.8E-07 2.1E-11 57.4 7.7 70 13-87 1-71 (210)
104 PRK09381 trxA thioredoxin; Pro 98.5 8.7E-07 1.9E-11 52.2 6.8 60 13-77 25-90 (109)
105 PF00085 Thioredoxin: Thioredo 98.5 3.6E-06 7.8E-11 48.5 9.3 69 3-76 8-85 (103)
106 cd02965 HyaE HyaE family; HyaE 98.5 6E-07 1.3E-11 53.8 6.0 62 12-78 30-99 (111)
107 cd03044 GST_N_EF1Bgamma GST_N 98.5 1.4E-06 3E-11 48.3 7.1 70 14-85 2-72 (75)
108 cd02957 Phd_like Phosducin (Ph 98.5 4.8E-07 1E-11 54.0 5.4 62 13-80 28-94 (113)
109 cd02959 ERp19 Endoplasmic reti 98.5 1.5E-06 3.2E-11 52.4 7.3 67 4-76 12-91 (117)
110 cd01659 TRX_superfamily Thiore 98.5 6E-07 1.3E-11 46.4 5.0 56 13-72 1-61 (69)
111 cd02963 TRX_DnaJ TRX domain, D 98.4 1.3E-06 2.9E-11 51.9 6.6 56 13-75 28-92 (111)
112 cd02993 PDI_a_APS_reductase PD 98.4 2.7E-06 5.9E-11 50.4 7.9 56 11-69 23-83 (109)
113 PF13098 Thioredoxin_2: Thiore 98.4 1.3E-06 2.9E-11 51.5 6.5 70 12-81 8-105 (112)
114 KOG4023 Uncharacterized conser 98.4 3.8E-07 8.3E-12 53.0 3.9 86 11-96 2-98 (108)
115 cd02987 Phd_like_Phd Phosducin 98.4 6.1E-07 1.3E-11 57.7 5.3 80 13-98 87-175 (175)
116 cd02956 ybbN ybbN protein fami 98.4 2.3E-06 5E-11 49.2 7.3 58 13-75 16-79 (96)
117 cd03004 PDI_a_ERdj5_C PDIa fam 98.4 1.6E-06 3.5E-11 50.6 6.5 55 13-72 23-83 (104)
118 COG1393 ArsC Arsenate reductas 98.4 1.9E-06 4.1E-11 52.1 6.9 47 12-58 2-49 (117)
119 cd02999 PDI_a_ERp44_like PDIa 98.4 1.3E-06 2.8E-11 51.2 6.0 53 13-69 22-77 (100)
120 PRK10026 arsenate reductase; P 98.4 2.1E-06 4.6E-11 53.4 7.1 48 11-58 2-50 (141)
121 cd03006 PDI_a_EFP1_N PDIa fami 98.4 9.2E-07 2E-11 53.1 5.3 57 13-73 33-95 (113)
122 cd03047 GST_N_2 GST_N family, 98.4 5.1E-06 1.1E-10 45.7 7.9 70 14-84 2-71 (73)
123 KOG0907 Thioredoxin [Posttrans 98.4 1.1E-06 2.3E-11 52.3 5.4 55 13-74 25-86 (106)
124 TIGR01068 thioredoxin thioredo 98.4 7.2E-06 1.6E-10 47.0 8.9 59 12-75 17-81 (101)
125 cd03005 PDI_a_ERp46 PDIa famil 98.4 1.6E-06 3.4E-11 50.2 6.0 67 4-75 10-86 (102)
126 cd03002 PDI_a_MPD1_like PDI fa 98.4 3.1E-06 6.7E-11 49.6 7.3 54 12-70 21-80 (109)
127 cd03000 PDI_a_TMX3 PDIa family 98.4 2.4E-06 5.1E-11 50.1 6.8 62 3-69 8-77 (104)
128 cd02952 TRP14_like Human TRX-r 98.4 9.7E-07 2.1E-11 53.5 5.0 58 13-70 25-96 (119)
129 cd02955 SSP411 TRX domain, SSP 98.4 7.7E-06 1.7E-10 49.9 9.0 75 3-77 7-96 (124)
130 PRK10996 thioredoxin 2; Provis 98.4 7.2E-06 1.6E-10 50.8 9.0 68 3-75 44-119 (139)
131 TIGR00014 arsC arsenate reduct 98.4 2.1E-06 4.6E-11 51.6 6.4 46 13-58 1-47 (114)
132 cd02950 TxlA TRX-like protein 98.4 3.9E-06 8.6E-11 52.2 7.6 67 4-75 13-90 (142)
133 cd03034 ArsC_ArsC Arsenate Red 98.3 2.2E-06 4.8E-11 51.3 6.2 45 13-57 1-46 (112)
134 cd03057 GST_N_Beta GST_N famil 98.3 7.2E-06 1.6E-10 45.4 7.5 70 14-85 2-72 (77)
135 cd02997 PDI_a_PDIR PDIa family 98.3 3.9E-06 8.5E-11 48.6 6.6 68 4-75 10-88 (104)
136 TIGR00862 O-ClC intracellular 98.3 1.2E-05 2.6E-10 54.1 9.7 64 19-86 17-80 (236)
137 KOG0406 Glutathione S-transfer 98.3 9.9E-06 2.1E-10 54.1 8.8 74 11-87 8-81 (231)
138 cd02961 PDI_a_family Protein D 98.3 9.9E-06 2.1E-10 46.1 7.6 63 3-70 7-77 (101)
139 PRK10877 protein disulfide iso 98.3 7.1E-06 1.5E-10 54.9 7.8 69 12-80 110-219 (232)
140 TIGR01616 nitro_assoc nitrogen 98.3 6.1E-06 1.3E-10 50.5 6.8 46 12-57 2-48 (126)
141 PRK15113 glutathione S-transfe 98.3 1.3E-05 2.9E-10 52.5 8.9 75 10-85 3-79 (214)
142 PRK10853 putative reductase; P 98.2 5.3E-06 1.1E-10 50.2 6.2 46 13-58 2-48 (118)
143 TIGR01126 pdi_dom protein disu 98.2 2.7E-06 5.9E-11 49.0 4.5 62 4-70 6-75 (102)
144 cd02998 PDI_a_ERp38 PDIa famil 98.2 6.7E-06 1.4E-10 47.6 6.1 54 13-70 22-81 (105)
145 cd02988 Phd_like_VIAF Phosduci 98.2 2E-06 4.4E-11 56.1 4.1 56 13-76 106-166 (192)
146 PLN00410 U5 snRNP protein, DIM 98.2 8.2E-06 1.8E-10 50.9 6.5 54 13-73 27-89 (142)
147 cd03001 PDI_a_P5 PDIa family, 98.2 6.6E-06 1.4E-10 47.6 5.8 52 13-69 22-77 (103)
148 TIGR02740 TraF-like TraF-like 98.2 8E-06 1.7E-10 55.9 6.9 67 4-70 161-235 (271)
149 cd03046 GST_N_GTT1_like GST_N 98.2 3.5E-05 7.6E-10 42.3 8.4 71 14-86 2-72 (76)
150 cd03043 GST_N_1 GST_N family, 98.2 2.5E-05 5.3E-10 43.1 7.5 65 18-84 7-71 (73)
151 cd03065 PDI_b_Calsequestrin_N 98.2 1.2E-05 2.7E-10 48.8 6.7 67 3-76 18-101 (120)
152 PF14595 Thioredoxin_9: Thiore 98.1 1.7E-06 3.7E-11 53.1 2.6 64 3-70 35-103 (129)
153 cd02992 PDI_a_QSOX PDIa family 98.1 1.5E-05 3.4E-10 47.6 6.7 64 4-70 11-84 (114)
154 PTZ00062 glutaredoxin; Provisi 98.1 1.1E-05 2.4E-10 53.1 6.4 64 2-78 7-78 (204)
155 PF13728 TraF: F plasmid trans 98.1 1.6E-05 3.5E-10 52.7 7.0 68 3-70 114-189 (215)
156 PLN02473 glutathione S-transfe 98.1 3.4E-05 7.3E-10 50.4 8.3 72 13-85 3-74 (214)
157 PLN02378 glutathione S-transfe 98.1 3.5E-05 7.5E-10 50.7 8.1 64 19-86 18-81 (213)
158 TIGR01262 maiA maleylacetoacet 98.0 2.2E-05 4.7E-10 51.1 6.3 72 15-86 2-73 (210)
159 PRK13728 conjugal transfer pro 98.0 3.3E-05 7.2E-10 50.0 6.9 62 12-73 72-148 (181)
160 PTZ00443 Thioredoxin domain-co 98.0 1.4E-05 3.1E-10 53.3 5.2 59 12-75 55-119 (224)
161 PLN02817 glutathione dehydroge 98.0 6E-05 1.3E-09 51.4 8.4 65 18-86 70-134 (265)
162 PF13899 Thioredoxin_7: Thiore 97.9 3.9E-05 8.5E-10 43.1 5.5 52 13-70 21-79 (82)
163 TIGR02738 TrbB type-F conjugat 97.9 6E-05 1.3E-09 47.5 6.9 38 9-46 50-91 (153)
164 cd03020 DsbA_DsbC_DsbG DsbA fa 97.9 9.3E-05 2E-09 48.1 7.8 23 11-33 79-101 (197)
165 cd03008 TryX_like_RdCVF Trypar 97.9 0.00015 3.3E-09 45.4 8.2 21 13-33 29-49 (146)
166 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 5.4E-05 1.2E-09 43.7 5.8 52 13-70 22-79 (104)
167 TIGR02739 TraF type-F conjugat 97.9 8.2E-05 1.8E-09 50.6 7.0 69 2-70 143-219 (256)
168 cd03009 TryX_like_TryX_NRX Try 97.9 0.00018 3.9E-09 43.6 7.9 64 12-75 21-113 (131)
169 COG2999 GrxB Glutaredoxin 2 [P 97.9 4.5E-05 9.6E-10 49.2 5.2 68 14-86 2-70 (215)
170 cd02964 TryX_like_family Trypa 97.8 0.00015 3.3E-09 44.1 7.0 21 13-33 21-41 (132)
171 PRK13703 conjugal pilus assemb 97.8 0.00012 2.7E-09 49.5 6.7 69 2-70 136-212 (248)
172 COG0625 Gst Glutathione S-tran 97.8 0.00014 3E-09 47.5 6.8 72 14-87 2-74 (211)
173 PRK10357 putative glutathione 97.8 0.00019 4.2E-09 46.4 7.4 68 14-85 2-70 (202)
174 PF03960 ArsC: ArsC family; I 97.8 6.6E-05 1.4E-09 44.6 4.6 44 16-59 1-45 (110)
175 cd03010 TlpA_like_DsbE TlpA-li 97.7 0.00022 4.7E-09 43.0 6.8 33 12-44 28-62 (127)
176 cd03077 GST_N_Alpha GST_N fami 97.7 0.00035 7.5E-09 39.0 7.2 69 13-85 2-72 (79)
177 TIGR00424 APS_reduc 5'-adenyly 97.7 9.7E-05 2.1E-09 54.0 6.1 56 13-73 375-439 (463)
178 PLN02309 5'-adenylylsulfate re 97.7 0.00024 5.1E-09 52.0 7.9 59 12-73 368-433 (457)
179 cd02972 DsbA_family DsbA famil 97.7 0.00017 3.7E-09 40.6 5.9 60 13-72 1-91 (98)
180 PRK15412 thiol:disulfide inter 97.7 0.00027 5.9E-09 45.6 7.3 33 13-45 72-105 (185)
181 PTZ00102 disulphide isomerase; 97.7 0.00025 5.4E-09 51.4 7.6 66 4-74 42-118 (477)
182 cd03007 PDI_a_ERp29_N PDIa fam 97.7 0.0011 2.3E-08 40.1 9.0 69 3-73 10-91 (116)
183 KOG1422 Intracellular Cl- chan 97.7 0.00045 9.7E-09 45.6 7.9 63 20-86 20-82 (221)
184 TIGR01130 ER_PDI_fam protein d 97.7 0.00028 6.1E-09 50.7 7.7 67 3-74 10-87 (462)
185 PLN02395 glutathione S-transfe 97.7 0.00045 9.8E-09 45.1 7.9 72 13-86 3-74 (215)
186 KOG0908 Thioredoxin-like prote 97.7 0.0001 2.2E-09 49.8 4.9 56 13-75 25-87 (288)
187 KOG0190 Protein disulfide isom 97.6 0.00029 6.2E-09 51.8 6.4 68 2-74 33-111 (493)
188 cd03011 TlpA_like_ScsD_MtbDsbE 97.6 0.00024 5.2E-09 42.4 5.1 33 11-43 22-54 (123)
189 PRK00293 dipZ thiol:disulfide 97.5 0.00067 1.4E-08 50.9 8.2 60 13-74 478-547 (571)
190 PF13905 Thioredoxin_8: Thiore 97.5 0.0004 8.7E-09 39.6 5.7 48 12-59 4-57 (95)
191 cd03023 DsbA_Com1_like DsbA fa 97.5 0.00087 1.9E-08 41.1 7.3 25 60-84 125-149 (154)
192 PRK13972 GSH-dependent disulfi 97.5 0.0012 2.6E-08 43.2 8.2 71 13-85 2-79 (215)
193 cd02960 AGR Anterior Gradient 97.5 0.00037 8E-09 42.9 5.3 28 4-31 16-45 (130)
194 cd02967 mauD Methylamine utili 97.5 0.00043 9.2E-09 40.7 5.4 56 12-69 24-83 (114)
195 cd02982 PDI_b'_family Protein 97.5 0.00031 6.8E-09 40.6 4.7 56 10-70 13-74 (103)
196 KOG2501 Thioredoxin, nucleored 97.5 0.00023 5.1E-09 44.9 4.2 52 7-58 30-89 (157)
197 PF06764 DUF1223: Protein of u 97.4 0.00034 7.3E-09 46.1 4.9 67 13-79 2-86 (202)
198 TIGR02661 MauD methylamine deh 97.4 0.0012 2.6E-08 42.8 7.1 20 13-32 78-97 (189)
199 PRK11752 putative S-transferas 97.4 0.0019 4.1E-08 44.0 8.2 75 9-85 41-125 (264)
200 PF02798 GST_N: Glutathione S- 97.4 0.0035 7.7E-08 34.6 8.0 69 13-84 3-73 (76)
201 PTZ00102 disulphide isomerase; 97.4 0.00025 5.5E-09 51.4 3.9 52 13-69 379-436 (477)
202 TIGR00385 dsbE periplasmic pro 97.3 0.0014 3E-08 41.8 6.9 22 13-34 67-88 (173)
203 PRK03147 thiol-disulfide oxido 97.3 0.002 4.3E-08 40.6 7.4 64 12-75 64-152 (173)
204 cd03078 GST_N_Metaxin1_like GS 97.3 0.0028 6E-08 35.0 7.1 56 20-86 15-70 (73)
205 cd02966 TlpA_like_family TlpA- 97.3 0.001 2.2E-08 38.2 5.5 49 10-58 20-74 (116)
206 PF07315 DUF1462: Protein of u 97.2 0.0017 3.8E-08 37.2 5.7 64 14-77 1-80 (93)
207 cd03079 GST_N_Metaxin2 GST_N f 97.2 0.0055 1.2E-07 34.1 7.2 58 19-86 15-72 (74)
208 COG4837 Uncharacterized protei 97.2 0.0013 2.8E-08 38.1 4.6 70 8-77 2-87 (106)
209 COG5494 Predicted thioredoxin/ 97.1 0.0025 5.3E-08 42.3 6.2 58 12-76 12-71 (265)
210 COG3019 Predicted metal-bindin 97.1 0.0058 1.3E-07 38.0 7.3 78 9-89 24-104 (149)
211 PRK10542 glutathionine S-trans 97.1 0.0033 7.1E-08 40.5 6.7 71 14-85 2-73 (201)
212 cd03012 TlpA_like_DipZ_like Tl 97.1 0.0055 1.2E-07 36.9 7.2 23 12-34 26-48 (126)
213 cd03075 GST_N_Mu GST_N family, 97.1 0.013 2.8E-07 32.9 8.1 71 15-85 3-78 (82)
214 COG2143 Thioredoxin-related pr 97.0 0.0025 5.5E-08 40.4 5.5 64 13-76 46-130 (182)
215 cd02958 UAS UAS family; UAS is 97.0 0.0066 1.4E-07 36.0 7.1 63 4-70 10-83 (114)
216 PTZ00057 glutathione s-transfe 97.0 0.011 2.4E-07 38.5 8.5 74 11-85 3-79 (205)
217 PF06110 DUF953: Eukaryotic pr 96.9 0.00027 5.9E-09 42.8 0.4 52 19-70 36-95 (119)
218 PF08534 Redoxin: Redoxin; In 96.9 0.0091 2E-07 36.6 7.2 22 13-34 32-54 (146)
219 KOG0868 Glutathione S-transfer 96.9 0.005 1.1E-07 40.0 5.9 71 16-88 11-81 (217)
220 KOG0912 Thiol-disulfide isomer 96.8 0.003 6.5E-08 44.1 5.1 67 2-75 4-85 (375)
221 PRK14018 trifunctional thiored 96.7 0.0043 9.3E-08 46.2 5.2 22 13-34 60-81 (521)
222 TIGR01130 ER_PDI_fam protein d 96.7 0.005 1.1E-07 44.3 5.3 51 13-70 368-425 (462)
223 PLN02919 haloacid dehalogenase 96.6 0.015 3.2E-07 46.8 8.3 22 13-34 424-445 (1057)
224 KOG4277 Uncharacterized conser 96.6 0.0025 5.3E-08 44.6 3.3 61 13-75 47-112 (468)
225 KOG3425 Uncharacterized conser 96.6 0.0033 7.2E-08 38.1 3.5 52 19-70 43-101 (128)
226 KOG0190 Protein disulfide isom 96.6 0.0012 2.7E-08 48.6 1.9 26 13-38 388-413 (493)
227 PRK11657 dsbG disulfide isomer 96.5 0.003 6.5E-08 42.9 3.0 22 12-33 120-141 (251)
228 KOG0867 Glutathione S-transfer 96.4 0.024 5.2E-07 37.8 7.2 73 12-85 2-74 (226)
229 PHA03075 glutaredoxin-like pro 96.4 0.0074 1.6E-07 36.3 4.0 34 11-44 3-36 (123)
230 smart00594 UAS UAS domain. 96.4 0.043 9.3E-07 33.0 7.5 63 4-70 20-92 (122)
231 PF06953 ArsD: Arsenical resis 96.3 0.046 1E-06 33.4 7.3 75 10-85 1-95 (123)
232 KOG4244 Failed axon connection 96.3 0.023 5.1E-07 38.9 6.5 64 10-84 43-113 (281)
233 COG3634 AhpF Alkyl hydroperoxi 96.2 0.011 2.5E-07 42.4 4.6 72 2-78 109-183 (520)
234 cd02969 PRX_like1 Peroxiredoxi 96.1 0.044 9.6E-07 34.6 6.8 22 12-33 28-49 (171)
235 PF03190 Thioredox_DsbH: Prote 96.1 0.017 3.7E-07 36.9 4.8 72 4-75 30-116 (163)
236 TIGR01626 ytfJ_HI0045 conserve 96.1 0.035 7.6E-07 36.1 6.3 34 12-45 62-104 (184)
237 COG5429 Uncharacterized secret 96.0 0.014 3.1E-07 39.3 4.4 61 13-73 45-122 (261)
238 cd02968 SCO SCO (an acronym fo 96.0 0.046 1E-06 33.1 6.3 57 12-70 25-93 (142)
239 KOG1695 Glutathione S-transfer 96.0 0.089 1.9E-06 34.9 7.9 71 11-85 2-72 (206)
240 COG4232 Thiol:disulfide interc 95.9 0.031 6.7E-07 42.0 6.2 67 3-70 464-540 (569)
241 PF02114 Phosducin: Phosducin; 95.9 0.016 3.5E-07 39.7 4.4 83 13-101 150-241 (265)
242 cd00340 GSH_Peroxidase Glutath 95.9 0.031 6.8E-07 34.7 5.3 55 13-69 26-92 (152)
243 PTZ00056 glutathione peroxidas 95.8 0.046 9.9E-07 35.8 6.1 21 13-33 43-63 (199)
244 KOG0191 Thioredoxin/protein di 95.7 0.011 2.3E-07 42.3 3.1 56 10-70 48-107 (383)
245 PF10568 Tom37: Outer mitochon 95.7 0.11 2.4E-06 28.7 6.5 55 20-85 13-71 (72)
246 PF00578 AhpC-TSA: AhpC/TSA fa 95.7 0.14 3.1E-06 30.1 7.4 63 5-70 21-89 (124)
247 cd02970 PRX_like2 Peroxiredoxi 95.5 0.054 1.2E-06 32.9 5.3 23 12-34 26-49 (149)
248 PF04134 DUF393: Protein of un 95.5 0.05 1.1E-06 32.1 4.9 71 15-87 1-76 (114)
249 PTZ00256 glutathione peroxidas 95.4 0.068 1.5E-06 34.4 5.7 19 14-32 46-64 (183)
250 PLN02412 probable glutathione 95.3 0.18 3.8E-06 32.0 7.4 21 13-33 33-53 (167)
251 PLN02399 phospholipid hydroper 95.1 0.12 2.7E-06 34.9 6.4 22 12-33 102-123 (236)
252 cd05295 MDH_like Malate dehydr 95.1 0.082 1.8E-06 38.9 5.9 69 18-86 1-82 (452)
253 COG0526 TrxA Thiol-disulfide i 95.1 0.019 4.1E-07 32.4 2.2 19 16-34 39-57 (127)
254 cd03019 DsbA_DsbA DsbA family, 95.0 0.027 5.8E-07 35.5 2.8 24 10-33 16-39 (178)
255 PF13462 Thioredoxin_4: Thiore 94.7 0.034 7.4E-07 34.4 2.8 25 60-84 132-156 (162)
256 TIGR03137 AhpC peroxiredoxin. 94.7 0.13 2.7E-06 33.3 5.4 21 11-31 32-54 (187)
257 TIGR03143 AhpF_homolog putativ 94.3 0.15 3.1E-06 38.3 5.6 52 12-70 369-425 (555)
258 cd03015 PRX_Typ2cys Peroxiredo 94.2 0.17 3.8E-06 32.0 5.2 21 13-33 33-54 (173)
259 KOG0191 Thioredoxin/protein di 94.2 0.13 2.7E-06 36.9 5.0 55 10-69 163-223 (383)
260 cd03017 PRX_BCP Peroxiredoxin 94.0 0.67 1.4E-05 27.8 7.3 53 13-68 27-85 (140)
261 PF11009 DUF2847: Protein of u 94.0 0.65 1.4E-05 27.6 6.9 71 3-76 9-92 (105)
262 TIGR02540 gpx7 putative glutat 93.8 0.073 1.6E-06 33.0 2.9 20 13-32 26-45 (153)
263 cd03014 PRX_Atyp2cys Peroxired 93.8 0.17 3.7E-06 30.8 4.4 22 12-33 29-51 (143)
264 cd02971 PRX_family Peroxiredox 93.8 0.19 4.2E-06 30.2 4.7 22 12-33 25-47 (140)
265 cd03018 PRX_AhpE_like Peroxire 93.8 0.2 4.2E-06 30.6 4.7 21 13-33 32-53 (149)
266 KOG1731 FAD-dependent sulfhydr 93.6 0.031 6.8E-07 42.0 1.0 61 12-77 60-138 (606)
267 PF13462 Thioredoxin_4: Thiore 93.5 0.1 2.3E-06 32.2 3.2 21 11-31 14-34 (162)
268 PRK13599 putative peroxiredoxi 93.0 0.25 5.4E-06 32.8 4.5 31 15-45 35-72 (215)
269 KOG0913 Thiol-disulfide isomer 93.0 0.028 6E-07 37.9 -0.0 65 3-74 33-106 (248)
270 cd03016 PRX_1cys Peroxiredoxin 92.9 0.26 5.5E-06 32.3 4.4 35 11-45 26-69 (203)
271 KOG4420 Uncharacterized conser 92.9 0.091 2E-06 36.2 2.3 74 13-87 27-100 (325)
272 COG0041 PurE Phosphoribosylcar 92.6 0.86 1.9E-05 29.0 6.2 73 13-85 7-103 (162)
273 KOG1672 ATP binding protein [P 92.5 0.84 1.8E-05 30.2 6.2 92 3-99 77-179 (211)
274 cd03022 DsbA_HCCA_Iso DsbA fam 92.3 0.36 7.9E-06 30.6 4.5 25 60-84 163-187 (192)
275 PRK13190 putative peroxiredoxi 92.1 0.39 8.4E-06 31.5 4.5 21 12-32 29-51 (202)
276 PF10865 DUF2703: Domain of un 92.1 0.62 1.3E-05 28.3 5.0 48 20-75 14-72 (120)
277 PRK15000 peroxidase; Provision 91.5 0.79 1.7E-05 30.0 5.5 23 10-32 34-58 (200)
278 TIGR03759 conj_TIGR03759 integ 91.4 0.39 8.4E-06 31.7 3.8 46 10-55 109-154 (200)
279 PRK13189 peroxiredoxin; Provis 91.2 0.59 1.3E-05 31.1 4.7 34 11-44 36-78 (222)
280 PRK09437 bcp thioredoxin-depen 90.9 1.7 3.7E-05 26.7 6.4 51 13-68 34-92 (154)
281 PRK11509 hydrogenase-1 operon 90.7 1.1 2.3E-05 27.7 5.2 61 13-78 37-107 (132)
282 KOG3171 Conserved phosducin-li 90.5 0.62 1.4E-05 31.3 4.2 82 13-100 163-253 (273)
283 PRK10382 alkyl hydroperoxide r 90.4 0.77 1.7E-05 29.8 4.6 20 12-31 33-54 (187)
284 PRK10606 btuE putative glutath 90.4 1.6 3.4E-05 28.3 6.0 61 12-74 28-103 (183)
285 PRK13191 putative peroxiredoxi 90.3 0.77 1.7E-05 30.5 4.6 37 10-46 33-78 (215)
286 PF01323 DSBA: DSBA-like thior 90.0 0.38 8.3E-06 30.5 2.9 33 12-44 1-38 (193)
287 PRK00522 tpx lipid hydroperoxi 89.5 1.1 2.4E-05 28.3 4.7 35 12-46 47-85 (167)
288 KOG0914 Thioredoxin-like prote 89.1 0.58 1.3E-05 31.6 3.2 71 4-75 135-218 (265)
289 PTZ00137 2-Cys peroxiredoxin; 88.0 2.2 4.7E-05 29.4 5.6 26 6-31 94-121 (261)
290 TIGR01162 purE phosphoribosyla 87.9 2.6 5.6E-05 26.8 5.5 73 14-86 4-100 (156)
291 PRK10954 periplasmic protein d 87.5 0.4 8.7E-06 31.4 1.7 21 10-30 38-58 (207)
292 PF11287 DUF3088: Protein of u 86.6 1.1 2.3E-05 27.0 3.0 52 20-73 23-77 (112)
293 KOG3414 Component of the U4/U6 86.4 2.1 4.5E-05 26.4 4.3 54 15-75 29-90 (142)
294 PTZ00253 tryparedoxin peroxida 86.3 2.6 5.5E-05 27.4 5.0 33 13-45 40-80 (199)
295 cd03013 PRX5_like Peroxiredoxi 86.1 2.6 5.7E-05 26.3 4.8 19 9-27 28-48 (155)
296 COG3011 Predicted thiol-disulf 86.0 6.3 0.00014 24.6 8.2 73 8-85 5-83 (137)
297 PRK10954 periplasmic protein d 85.4 1.3 2.8E-05 29.0 3.3 21 59-79 162-182 (207)
298 COG1651 DsbG Protein-disulfide 84.9 5 0.00011 26.6 6.1 24 10-33 85-108 (244)
299 PF01323 DSBA: DSBA-like thior 84.2 1.8 3.9E-05 27.4 3.5 25 60-84 163-188 (193)
300 PF03227 GILT: Gamma interfero 83.3 1.2 2.7E-05 26.2 2.3 20 12-31 2-22 (108)
301 cd03025 DsbA_FrnE_like DsbA fa 82.3 1 2.2E-05 28.6 1.9 22 12-33 2-23 (193)
302 COG2761 FrnE Predicted dithiol 82.1 0.87 1.9E-05 30.6 1.5 23 12-34 7-29 (225)
303 cd03019 DsbA_DsbA DsbA family, 81.7 2.8 6E-05 26.1 3.6 20 60-79 139-158 (178)
304 TIGR00385 dsbE periplasmic pro 81.0 9.4 0.0002 24.1 5.9 55 13-74 93-150 (173)
305 PF15643 Tox-PL-2: Papain fold 80.9 6.3 0.00014 23.2 4.6 27 20-46 20-47 (100)
306 cd02974 AhpF_NTD_N Alkyl hydro 79.8 3.2 6.8E-05 24.0 3.1 30 5-35 15-44 (94)
307 COG3340 PepE Peptidase E [Amin 78.8 7.7 0.00017 26.1 5.0 47 19-72 46-92 (224)
308 PF04566 RNA_pol_Rpb2_4: RNA p 78.8 1.8 3.9E-05 23.2 1.7 15 68-82 1-15 (63)
309 PF03575 Peptidase_S51: Peptid 78.7 5.6 0.00012 24.7 4.3 64 23-96 1-64 (154)
310 cd03022 DsbA_HCCA_Iso DsbA fam 78.6 2.1 4.6E-05 27.1 2.4 28 13-40 1-32 (192)
311 COG1331 Highly conserved prote 78.5 14 0.00031 28.9 7.0 72 4-75 36-122 (667)
312 PF13905 Thioredoxin_8: Thiore 77.7 9.8 0.00021 21.1 5.9 56 10-70 33-88 (95)
313 COG1651 DsbG Protein-disulfide 77.7 3.5 7.5E-05 27.4 3.3 24 60-83 211-234 (244)
314 PF00731 AIRC: AIR carboxylase 76.5 10 0.00023 23.9 5.0 41 19-59 11-51 (150)
315 cd03024 DsbA_FrnE DsbA family, 75.7 2 4.2E-05 27.5 1.6 20 13-32 1-20 (201)
316 COG1999 Uncharacterized protei 75.4 15 0.00032 24.2 5.7 60 12-72 70-139 (207)
317 PF09413 DUF2007: Domain of un 75.3 4.4 9.6E-05 21.4 2.7 53 13-73 1-53 (67)
318 TIGR03190 benz_CoA_bzdN benzoy 74.7 13 0.00027 26.8 5.6 11 65-75 344-354 (377)
319 TIGR03757 conj_TIGR03757 integ 74.5 10 0.00023 22.8 4.4 25 60-84 80-105 (113)
320 cd03024 DsbA_FrnE DsbA family, 73.9 8 0.00017 24.7 4.1 23 60-82 171-194 (201)
321 cd03021 DsbA_GSTK DsbA family, 73.7 5.2 0.00011 26.1 3.3 23 11-33 1-23 (209)
322 PF00004 AAA: ATPase family as 72.9 5.4 0.00012 23.2 3.0 61 13-73 1-67 (132)
323 PF09822 ABC_transp_aux: ABC-t 72.7 12 0.00025 25.5 4.9 45 4-48 20-75 (271)
324 TIGR01689 EcbF-BcbF capsule bi 71.0 16 0.00035 22.2 4.8 35 11-45 41-87 (126)
325 cd02127 PA_hPAP21_like PA_hPAP 70.8 19 0.00041 21.6 5.0 76 10-90 34-111 (118)
326 KOG2603 Oligosaccharyltransfer 70.6 24 0.00052 25.2 6.0 63 2-71 48-133 (331)
327 KOG2454 Betaine aldehyde dehyd 70.3 12 0.00026 27.6 4.6 42 4-45 210-256 (583)
328 PRK00766 hypothetical protein; 70.3 10 0.00022 25.0 4.0 52 35-86 42-95 (194)
329 cd06387 PBP1_iGluR_AMPA_GluR3 69.7 32 0.0007 24.7 6.8 81 6-86 58-148 (372)
330 TIGR03865 PQQ_CXXCW PQQ-depend 69.7 10 0.00022 24.0 3.8 29 9-37 115-143 (162)
331 PF10087 DUF2325: Uncharacteri 69.4 19 0.00041 20.5 4.9 39 4-42 42-82 (97)
332 PF02966 DIM1: Mitosis protein 69.2 14 0.00029 23.0 4.1 56 14-75 25-87 (133)
333 PF07511 DUF1525: Protein of u 68.0 8.1 0.00018 23.3 2.9 26 60-85 79-105 (114)
334 PLN02948 phosphoribosylaminoim 67.5 25 0.00054 27.0 6.1 71 17-87 419-513 (577)
335 PF06053 DUF929: Domain of unk 67.1 4.6 0.0001 27.6 2.0 24 13-36 62-89 (249)
336 PF11324 DUF3126: Protein of u 67.1 18 0.00039 19.5 3.8 12 67-78 31-42 (63)
337 PF02630 SCO1-SenC: SCO1/SenC; 66.3 31 0.00067 21.9 5.9 48 12-59 55-113 (174)
338 PF07728 AAA_5: AAA domain (dy 66.0 21 0.00046 21.3 4.6 40 12-51 1-40 (139)
339 cd02991 UAS_ETEA UAS family, E 65.8 26 0.00056 20.9 6.7 60 3-69 9-81 (116)
340 PF11399 DUF3192: Protein of u 63.8 6.6 0.00014 23.2 1.9 18 61-78 78-95 (102)
341 KOG3027 Mitochondrial outer me 63.7 22 0.00048 24.0 4.5 66 19-94 32-99 (257)
342 PRK15317 alkyl hydroperoxide r 63.5 9.5 0.0002 28.5 3.2 30 5-35 15-44 (517)
343 PF14606 Lipase_GDSL_3: GDSL-l 63.4 38 0.00083 22.0 5.6 59 13-71 36-100 (178)
344 TIGR03439 methyl_EasF probable 63.3 23 0.0005 25.1 4.9 62 18-83 82-146 (319)
345 PF13353 Fer4_12: 4Fe-4S singl 63.2 9 0.0002 22.9 2.6 14 12-25 7-23 (139)
346 PF00282 Pyridoxal_deC: Pyrido 63.2 22 0.00047 25.6 4.9 74 10-85 139-217 (373)
347 KOG1734 Predicted RING-contain 62.6 3.8 8.2E-05 28.5 0.9 11 18-28 270-280 (328)
348 PF02288 Dehydratase_MU: Dehyd 62.1 24 0.00052 21.1 4.2 43 10-52 2-47 (112)
349 PF13743 Thioredoxin_5: Thiore 61.8 9.1 0.0002 24.5 2.5 20 15-34 2-21 (176)
350 cd06381 PBP1_iGluR_delta_like 60.6 59 0.0013 23.2 8.3 82 3-85 54-161 (363)
351 cd03035 ArsC_Yffb Arsenate Red 60.4 9.9 0.00021 22.2 2.3 59 21-79 35-104 (105)
352 KOG4700 Uncharacterized homolo 60.1 37 0.00079 22.4 4.9 60 28-87 53-137 (207)
353 COG4822 CbiK Cobalamin biosynt 60.0 53 0.0011 22.4 6.4 74 2-75 125-209 (265)
354 TIGR02263 benz_CoA_red_C benzo 59.6 28 0.00062 25.1 4.9 34 12-45 324-361 (380)
355 PF00763 THF_DHG_CYH: Tetrahyd 58.0 38 0.00082 20.2 6.4 60 11-70 30-93 (117)
356 TIGR03140 AhpF alkyl hydropero 57.6 14 0.0003 27.6 3.2 30 5-35 15-44 (515)
357 PRK08118 topology modulation p 57.5 46 0.00099 20.9 6.6 66 10-78 1-72 (167)
358 PF14237 DUF4339: Domain of un 57.4 15 0.00032 17.9 2.3 24 69-92 5-30 (45)
359 COG0602 NrdG Organic radical a 57.0 16 0.00035 24.2 3.1 80 12-98 22-108 (212)
360 PF15616 TerY-C: TerY-C metal 56.8 3.2 7E-05 25.6 -0.2 15 15-29 74-88 (131)
361 cd06388 PBP1_iGluR_AMPA_GluR4 56.8 70 0.0015 22.8 7.2 80 6-86 58-148 (371)
362 cd04911 ACT_AKiii-YclM-BS_1 AC 56.0 16 0.00035 20.3 2.5 21 20-40 14-34 (76)
363 TIGR00014 arsC arsenate reduct 56.0 26 0.00057 20.7 3.7 30 50-79 77-106 (114)
364 cd08183 Fe-ADH2 Iron-containin 55.8 73 0.0016 22.8 7.2 49 11-59 23-71 (374)
365 KOG3160 Gamma-interferon induc 55.7 11 0.00024 25.3 2.2 17 11-27 41-57 (220)
366 cd02978 KaiB_like KaiB-like fa 55.2 25 0.00053 19.4 3.2 40 12-51 3-49 (72)
367 PF01949 DUF99: Protein of unk 54.9 9.6 0.00021 24.9 1.7 49 36-85 37-87 (187)
368 COG1628 Endonuclease V homolog 54.7 36 0.00077 22.4 4.3 51 35-86 41-93 (185)
369 PRK04195 replication factor C 54.5 88 0.0019 23.3 7.5 35 10-44 39-73 (482)
370 KOG3028 Translocase of outer m 54.0 78 0.0017 22.6 7.6 65 12-87 3-73 (313)
371 cd03082 TRX_Fd_NuoE_W_FDH_beta 53.9 23 0.00051 19.2 3.0 17 62-78 44-60 (72)
372 cd03129 GAT1_Peptidase_E_like 53.8 59 0.0013 21.1 9.0 57 10-72 29-88 (210)
373 KOG3170 Conserved phosducin-li 53.6 49 0.0011 22.3 4.8 50 14-71 116-168 (240)
374 TIGR00635 ruvB Holliday juncti 53.4 70 0.0015 21.8 7.3 59 12-73 32-90 (305)
375 cd03146 GAT1_Peptidase_E Type 52.7 64 0.0014 21.2 6.6 64 21-96 45-109 (212)
376 PF08599 Nbs1_C: DNA damage re 52.2 6.4 0.00014 21.1 0.5 31 60-96 13-44 (65)
377 cd08170 GlyDH Glycerol dehydro 51.7 83 0.0018 22.2 6.5 49 11-59 23-73 (351)
378 cd00755 YgdL_like Family of ac 51.6 31 0.00067 23.2 3.8 24 15-38 150-173 (231)
379 PF13364 BetaGal_dom4_5: Beta- 50.4 14 0.0003 21.8 1.8 19 61-79 60-78 (111)
380 COG4107 PhnK ABC-type phosphon 49.4 23 0.0005 23.6 2.8 57 26-84 130-188 (258)
381 TIGR03191 benz_CoA_bzdO benzoy 48.6 30 0.00066 25.5 3.7 18 28-45 384-401 (430)
382 cd00897 UGPase_euk Eukaryotic 48.1 96 0.0021 21.9 6.3 20 76-95 115-134 (300)
383 COG2256 MGS1 ATPase related to 47.9 1E+02 0.0022 23.1 6.1 71 3-74 38-114 (436)
384 PF07449 HyaE: Hydrogenase-1 e 47.5 18 0.00039 21.5 2.0 75 4-83 19-103 (107)
385 PF03470 zf-XS: XS zinc finger 46.3 5.8 0.00013 19.7 -0.2 6 21-26 1-6 (43)
386 cd03145 GAT1_cyanophycinase Ty 46.1 85 0.0018 20.7 6.9 56 11-72 30-91 (217)
387 PF15379 DUF4606: Domain of un 46.1 20 0.00043 21.2 1.9 19 14-32 27-45 (104)
388 PF07908 D-aminoacyl_C: D-amin 45.7 22 0.00048 17.8 1.9 15 63-77 18-32 (48)
389 PRK10670 hypothetical protein; 45.4 50 0.0011 20.8 3.9 22 26-47 3-24 (159)
390 PF05496 RuvB_N: Holliday junc 45.3 97 0.0021 21.1 6.8 78 12-92 52-132 (233)
391 cd04816 PA_SaNapH_like PA_SaNa 45.1 65 0.0014 19.0 5.5 73 10-88 43-115 (122)
392 KOG2672 Lipoate synthase [Coen 45.1 62 0.0013 23.0 4.5 75 12-88 113-214 (360)
393 PRK01655 spxA transcriptional 44.9 27 0.00059 21.2 2.6 31 50-80 77-107 (131)
394 PHA00729 NTP-binding motif con 44.7 77 0.0017 21.4 4.9 24 12-35 19-42 (226)
395 cd02123 PA_C_RZF_like PA_C-RZF 44.3 77 0.0017 19.8 4.6 72 10-88 67-140 (153)
396 CHL00195 ycf46 Ycf46; Provisio 44.1 91 0.002 23.5 5.6 34 11-44 260-293 (489)
397 cd06390 PBP1_iGluR_AMPA_GluR1 43.7 1.2E+02 0.0026 21.7 7.0 81 6-86 51-141 (364)
398 COG1039 RnhC Ribonuclease HIII 43.4 1.1E+02 0.0025 21.6 5.6 49 22-70 171-219 (297)
399 cd08186 Fe-ADH8 Iron-containin 42.1 1.3E+02 0.0028 21.7 6.7 49 11-59 27-80 (383)
400 PRK15348 type III secretion sy 41.9 42 0.00092 23.0 3.3 87 8-96 16-118 (249)
401 cd08185 Fe-ADH1 Iron-containin 41.6 1.3E+02 0.0028 21.6 6.4 48 11-58 26-78 (380)
402 PF01522 Polysacc_deac_1: Poly 41.4 17 0.00037 21.0 1.2 27 12-38 96-122 (123)
403 PRK14180 bifunctional 5,10-met 41.3 1.2E+02 0.0027 21.2 5.8 60 11-70 32-95 (282)
404 cd04336 YeaK YeaK is an unchar 40.9 71 0.0015 19.5 4.1 27 25-51 2-28 (153)
405 PF11008 DUF2846: Protein of u 40.8 25 0.00055 20.8 1.9 18 61-78 38-55 (117)
406 PRK02935 hypothetical protein; 40.7 8.8 0.00019 22.9 -0.1 16 20-35 72-87 (110)
407 PTZ00494 tuzin-like protein; P 40.7 1E+02 0.0023 23.8 5.3 61 10-76 394-455 (664)
408 cd01444 GlpE_ST GlpE sulfurtra 40.6 63 0.0014 17.6 4.2 28 9-37 55-82 (96)
409 PRK14189 bifunctional 5,10-met 40.3 1.3E+02 0.0028 21.1 5.9 60 11-70 33-96 (285)
410 cd06389 PBP1_iGluR_AMPA_GluR2 40.1 1.3E+02 0.0029 21.3 6.7 79 6-85 52-141 (370)
411 PF05673 DUF815: Protein of un 40.1 1.2E+02 0.0027 20.8 5.9 63 10-75 52-117 (249)
412 cd05564 PTS_IIB_chitobiose_lic 40.0 72 0.0016 18.2 4.6 57 22-78 14-85 (96)
413 cd08193 HVD 5-hydroxyvalerate 40.0 1.4E+02 0.003 21.4 6.8 62 11-72 27-92 (376)
414 PRK05282 (alpha)-aspartyl dipe 40.0 1.2E+02 0.0025 20.6 6.9 24 21-44 47-70 (233)
415 PLN02590 probable tyrosine dec 39.9 1.7E+02 0.0037 22.4 7.3 73 11-85 228-310 (539)
416 PLN02790 transketolase 39.8 75 0.0016 24.8 4.7 89 11-99 541-641 (654)
417 PRK14174 bifunctional 5,10-met 39.5 1.4E+02 0.0029 21.1 5.8 60 11-70 32-95 (295)
418 cd05565 PTS_IIB_lactose PTS_II 39.4 79 0.0017 18.4 3.8 54 23-76 16-84 (99)
419 TIGR02652 conserved hypothetic 39.0 11 0.00023 23.8 0.1 17 15-31 5-22 (163)
420 TIGR00853 pts-lac PTS system, 38.8 77 0.0017 18.1 4.8 57 22-78 18-89 (95)
421 cd08176 LPO Lactadehyde:propan 38.7 1.4E+02 0.0029 21.5 5.7 49 11-59 29-81 (377)
422 cd08188 Fe-ADH4 Iron-containin 38.7 1.5E+02 0.0032 21.3 6.2 49 11-59 29-81 (377)
423 PF08308 PEGA: PEGA domain; I 38.6 27 0.00059 18.4 1.7 13 67-79 14-26 (71)
424 PF04805 Pox_E10: E10-like pro 38.5 34 0.00075 18.7 2.0 17 20-36 17-34 (70)
425 PRK14167 bifunctional 5,10-met 38.5 1.4E+02 0.0031 21.1 5.8 60 11-70 32-95 (297)
426 cd04335 PrdX_deacylase This CD 38.4 96 0.0021 19.1 4.8 45 25-70 2-46 (156)
427 PRK14191 bifunctional 5,10-met 38.4 1.4E+02 0.003 21.0 5.9 60 11-70 32-95 (285)
428 cd08192 Fe-ADH7 Iron-containin 38.3 1.5E+02 0.0032 21.2 6.4 49 11-59 25-77 (370)
429 PF00571 CBS: CBS domain CBS d 38.1 52 0.0011 16.0 2.9 36 42-78 11-46 (57)
430 PF02225 PA: PA domain; Inter 38.1 72 0.0016 17.7 3.5 58 10-72 33-91 (101)
431 PF03031 NIF: NLI interacting 37.7 52 0.0011 20.1 3.1 37 2-38 43-79 (159)
432 PRK12559 transcriptional regul 37.6 46 0.001 20.3 2.8 46 35-80 61-107 (131)
433 PRK14190 bifunctional 5,10-met 37.6 1.4E+02 0.0031 20.9 5.9 59 11-69 33-95 (284)
434 PF12689 Acid_PPase: Acid Phos 37.6 1.1E+02 0.0024 19.6 6.1 60 12-74 63-134 (169)
435 KOG4030 Uncharacterized conser 37.2 12 0.00026 24.0 0.2 40 35-75 132-171 (197)
436 PF13394 Fer4_14: 4Fe-4S singl 37.2 40 0.00086 19.5 2.4 20 65-84 49-70 (119)
437 TIGR02808 short_TIGR02808 cons 37.1 14 0.0003 18.0 0.3 18 55-72 7-24 (42)
438 TIGR00011 YbaK_EbsC ybaK/ebsC 37.0 90 0.0019 19.1 4.1 23 26-48 2-24 (152)
439 PF09654 DUF2396: Protein of u 36.7 11 0.00024 23.6 -0.1 12 20-31 8-19 (161)
440 PF04900 Fcf1: Fcf1; InterPro 36.6 56 0.0012 18.7 2.9 21 51-74 75-95 (101)
441 KOG0371 Serine/threonine prote 36.3 65 0.0014 22.6 3.5 26 65-91 60-85 (319)
442 PRK14175 bifunctional 5,10-met 36.2 1.5E+02 0.0033 20.8 5.9 60 11-70 33-96 (286)
443 PF00549 Ligase_CoA: CoA-ligas 36.0 1.1E+02 0.0025 19.2 4.9 59 22-80 6-90 (153)
444 cd01520 RHOD_YbbB Member of th 35.8 96 0.0021 18.3 4.2 34 9-44 85-118 (128)
445 PRK14169 bifunctional 5,10-met 35.8 1.5E+02 0.0033 20.7 5.9 60 11-70 31-94 (282)
446 cd02125 PA_VSR PA_VSR: Proteas 35.7 1E+02 0.0022 18.6 5.7 27 10-37 42-68 (127)
447 PF01924 HypD: Hydrogenase for 35.6 30 0.00066 25.0 1.9 26 5-31 42-67 (355)
448 PF11238 DUF3039: Protein of u 35.3 24 0.00053 18.6 1.1 13 19-31 45-57 (58)
449 TIGR01650 PD_CobS cobaltochela 35.2 1.7E+02 0.0037 21.0 7.1 45 6-50 60-104 (327)
450 TIGR02260 benz_CoA_red_B benzo 34.3 72 0.0016 23.4 3.8 34 13-46 354-392 (413)
451 PRK14166 bifunctional 5,10-met 34.2 1.7E+02 0.0036 20.6 5.9 60 11-70 31-94 (282)
452 TIGR01012 Sa_S2_E_A ribosomal 34.0 1.1E+02 0.0023 20.3 4.2 48 25-78 50-97 (196)
453 TIGR02250 FCP1_euk FCP1-like p 34.0 1.2E+02 0.0026 18.9 4.7 31 4-34 67-97 (156)
454 PF14437 MafB19-deam: MafB19-l 33.9 64 0.0014 20.4 3.0 29 10-38 99-129 (146)
455 PF12949 HeH: HeH/LEM domain; 33.6 31 0.00068 16.2 1.2 13 26-38 8-20 (35)
456 TIGR00075 hypD hydrogenase exp 33.4 25 0.00055 25.5 1.3 23 10-32 57-79 (369)
457 PF07955 DUF1687: Protein of u 33.3 1.6 3.4E-05 27.0 -4.2 34 1-34 1-35 (133)
458 TIGR02069 cyanophycinase cyano 33.2 1.6E+02 0.0034 20.0 6.2 34 12-45 30-67 (250)
459 cd01521 RHOD_PspE2 Member of t 33.1 98 0.0021 17.6 4.4 28 10-37 64-92 (110)
460 PRK14172 bifunctional 5,10-met 32.9 1.7E+02 0.0038 20.4 5.8 60 11-70 33-96 (278)
461 PRK00080 ruvB Holliday junctio 32.9 1.7E+02 0.0037 20.4 6.9 61 11-74 52-112 (328)
462 COG1832 Predicted CoA-binding 32.8 1.3E+02 0.0028 18.9 5.4 42 2-45 7-51 (140)
463 cd00361 arom_aa_hydroxylase Bi 32.5 50 0.0011 22.3 2.5 39 24-67 29-67 (221)
464 PF01704 UDPGP: UTP--glucose-1 32.2 1.3E+02 0.0028 22.3 4.8 73 24-96 92-190 (420)
465 cd01896 DRG The developmentall 32.2 1.4E+02 0.003 19.9 4.6 49 23-73 137-185 (233)
466 PRK15062 hydrogenase isoenzyme 32.2 27 0.00058 25.4 1.2 23 10-32 51-73 (364)
467 PF13451 zf-trcl: Probable zin 32.2 33 0.00072 17.5 1.3 12 20-31 35-46 (49)
468 COG1154 Dxs Deoxyxylulose-5-ph 32.0 2.6E+02 0.0055 22.1 6.7 66 12-80 503-570 (627)
469 PF04592 SelP_N: Selenoprotein 31.9 1.7E+02 0.0037 20.1 5.2 56 12-68 29-93 (238)
470 PF02837 Glyco_hydro_2_N: Glyc 31.7 42 0.00092 20.6 2.0 21 59-79 91-111 (167)
471 COG4020 Uncharacterized protei 31.7 45 0.00098 23.3 2.2 21 62-82 163-183 (332)
472 PRK05771 V-type ATP synthase s 31.7 2.4E+02 0.0051 22.0 6.3 66 9-86 270-337 (646)
473 cd01448 TST_Repeat_1 Thiosulfa 31.4 1.1E+02 0.0024 17.6 4.0 26 12-37 81-106 (122)
474 PF11823 DUF3343: Protein of u 31.3 58 0.0013 17.5 2.3 13 26-38 54-66 (73)
475 PRK14179 bifunctional 5,10-met 31.2 1.9E+02 0.0041 20.3 5.9 59 11-69 33-95 (284)
476 COG3917 NahD 2-hydroxychromene 31.2 76 0.0016 21.0 3.0 26 60-85 172-197 (203)
477 PF05728 UPF0227: Uncharacteri 31.1 1.1E+02 0.0024 19.9 3.9 61 21-81 11-74 (187)
478 PRK08557 hypothetical protein; 31.1 2.2E+02 0.0048 21.1 7.1 60 13-72 183-242 (417)
479 cd08551 Fe-ADH iron-containing 31.1 2E+02 0.0043 20.5 6.3 49 11-59 24-76 (370)
480 PRK14177 bifunctional 5,10-met 31.0 1.9E+02 0.0041 20.3 5.7 60 11-70 34-97 (284)
481 PRK14173 bifunctional 5,10-met 31.0 1.9E+02 0.0041 20.3 5.9 60 11-70 30-93 (287)
482 cd03081 TRX_Fd_NuoE_FDH_gamma 30.9 84 0.0018 17.2 2.9 18 62-79 52-69 (80)
483 PRK15116 sulfur acceptor prote 30.9 61 0.0013 22.4 2.8 23 15-37 169-192 (268)
484 PRK10624 L-1,2-propanediol oxi 30.8 2E+02 0.0044 20.6 6.2 48 11-58 31-82 (382)
485 TIGR01241 FtsH_fam ATP-depende 30.6 2.1E+02 0.0046 21.4 5.7 61 12-73 90-156 (495)
486 TIGR02251 HIF-SF_euk Dullard-l 30.4 1E+02 0.0022 19.2 3.6 32 2-33 49-80 (162)
487 cd04333 ProX_deacylase This CD 30.4 1.1E+02 0.0024 18.6 3.7 21 25-45 2-22 (148)
488 PRK13947 shikimate kinase; Pro 30.3 1E+02 0.0022 18.9 3.6 29 11-39 2-30 (171)
489 cd00002 YbaK_deacylase This CD 30.3 1.2E+02 0.0026 18.6 3.9 23 26-48 3-25 (152)
490 PRK14181 bifunctional 5,10-met 30.2 2E+02 0.0043 20.3 5.8 60 11-70 27-90 (287)
491 COG0409 HypD Hydrogenase matur 30.0 31 0.00067 24.8 1.2 17 10-26 53-69 (364)
492 PRK14188 bifunctional 5,10-met 30.0 2E+02 0.0044 20.3 5.9 60 11-70 33-96 (296)
493 cd08182 HEPD Hydroxyethylphosp 29.9 2.1E+02 0.0045 20.4 6.5 48 11-58 24-72 (367)
494 cd04813 PA_1 PA_1: Protease-as 29.9 1.3E+02 0.0028 17.9 4.5 28 10-38 39-66 (117)
495 PF12156 ATPase-cat_bd: Putati 29.8 52 0.0011 18.6 2.0 18 20-37 28-45 (88)
496 PF11521 TFIIE-A_C-term: C-ter 29.8 48 0.001 18.9 1.8 13 63-75 38-50 (86)
497 PF14311 DUF4379: Domain of un 29.7 19 0.00041 18.3 0.1 7 18-24 49-55 (55)
498 PF05711 TylF: Macrocin-O-meth 29.7 82 0.0018 21.6 3.2 43 4-46 198-241 (248)
499 PRK09301 circadian clock prote 29.5 95 0.0021 18.4 3.0 66 12-84 8-85 (103)
500 TIGR03297 Ppyr-DeCO2ase phosph 29.3 67 0.0015 23.2 2.9 54 23-77 103-157 (361)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=100.00 E-value=3.5e-36 Score=177.34 Aligned_cols=97 Identities=55% Similarity=1.005 Sum_probs=92.5
Q ss_pred HHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHh
Q 034205 4 VTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMS 83 (101)
Q Consensus 4 ~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~ 83 (101)
+++++++++|+||++++||||.+++++|++++++|+++|||.+++..++++++.+.+|++++|+|||+|++|||++++.+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 35789999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred HHHcCCchhhcccCCCC
Q 034205 84 LHLSGNLIPLLKPYQPF 100 (101)
Q Consensus 84 ~~~~g~L~~~l~~~g~~ 100 (101)
++++|+|.++|+++|++
T Consensus 81 l~~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 81 LHISGSLVPMLKQAGAL 97 (99)
T ss_pred HHHcCCHHHHHHHhCcc
Confidence 99999999999999975
No 2
>PHA03050 glutaredoxin; Provisional
Probab=100.00 E-value=6.8e-35 Score=174.10 Aligned_cols=99 Identities=15% Similarity=0.284 Sum_probs=93.3
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCC---CcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeech
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGV---HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGST 78 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i---~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~ 78 (101)
+++++++++++|+||+++|||||.+++++|+++++ +|++++++...+..++++++.+.+|..+||+|||||++|||+
T Consensus 4 ~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 4 EFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 46889999999999999999999999999999999 799999998766777889999999999999999999999999
Q ss_pred HHHHhHHHcCCchhhcccCCCC
Q 034205 79 NEVMSLHLSGNLIPLLKPYQPF 100 (101)
Q Consensus 79 ~~~~~~~~~g~L~~~l~~~g~~ 100 (101)
+++.+++++|+|.++|+++|++
T Consensus 84 ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 84 SDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred HHHHHHHHcCCHHHHHHHcccc
Confidence 9999999999999999999986
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=169.81 Aligned_cols=100 Identities=45% Similarity=0.774 Sum_probs=96.7
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHH
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEV 81 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~ 81 (101)
++++++++.++|+||++++||||++++.+|...++.+..+++|.+++..+++++|.+.+|.+++|.|||+|++|||++++
T Consensus 5 ~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 5 AKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred HHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHcCCchhhcccCCCCC
Q 034205 82 MSLHLSGNLIPLLKPYQPFS 101 (101)
Q Consensus 82 ~~~~~~g~L~~~l~~~g~~~ 101 (101)
.++|.+|+|.++|+.+|++.
T Consensus 85 ~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 85 MALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHHcCCHHHHHHHhhccC
Confidence 99999999999999998763
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=100.00 E-value=7e-34 Score=170.78 Aligned_cols=96 Identities=22% Similarity=0.392 Sum_probs=89.2
Q ss_pred hHHHhhhcCCcEEEEecC-----CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 2 DKVTRLASEKGVVIFSKS-----SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~-----~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
+++++++++++|+||+++ +||||++++++|++++++|.++|++.++ +++++|.+.+|++|+|+|||||++||
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 578899999999999994 9999999999999999999999998764 46779999999999999999999999
Q ss_pred chHHHHhHHHcCCchhhcccCCCC
Q 034205 77 STNEVMSLHLSGNLIPLLKPYQPF 100 (101)
Q Consensus 77 g~~~~~~~~~~g~L~~~l~~~g~~ 100 (101)
|+|++.+++++|+|.++|+++|++
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAAK 106 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHhh
Confidence 999999999999999999988863
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.97 E-value=2e-31 Score=156.51 Aligned_cols=90 Identities=22% Similarity=0.463 Sum_probs=83.2
Q ss_pred hHHHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 2 DKVTRLASEKGVVIFSK-----SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
+++++++++++|+||++ ++||||.+++++|++++++|.++||+.++ +.++++.+.+|+.++|+|||||++||
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNWPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCCCCCCEEEECCEEEe
Confidence 67899999999999998 89999999999999999999999997553 46678888999999999999999999
Q ss_pred chHHHHhHHHcCCchhhc
Q 034205 77 STNEVMSLHLSGNLIPLL 94 (101)
Q Consensus 77 g~~~~~~~~~~g~L~~~l 94 (101)
|++++.+++++|+|.++|
T Consensus 80 G~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 80 GCDIIMEMYQSGELQTLL 97 (97)
T ss_pred ChHHHHHHHHCcChHHhC
Confidence 999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.96 E-value=3.2e-29 Score=145.41 Aligned_cols=85 Identities=29% Similarity=0.530 Sum_probs=78.2
Q ss_pred HHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeech
Q 034205 4 VTRLASEKGVVIFSK-----SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGST 78 (101)
Q Consensus 4 ~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~ 78 (101)
++++++.++|+||++ ++||+|.+++++|++++++|+++|++.+ .++++++.+.+|..++|+|||||++|||+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 467899999999998 5999999999999999999999999865 35677899999999999999999999999
Q ss_pred HHHHhHHHcCCch
Q 034205 79 NEVMSLHLSGNLI 91 (101)
Q Consensus 79 ~~~~~~~~~g~L~ 91 (101)
+++.+++++|+|+
T Consensus 78 ~~l~~l~~~g~L~ 90 (90)
T cd03028 78 DIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHcCCcC
Confidence 9999999999985
No 7
>PRK10638 glutaredoxin 3; Provisional
Probab=99.95 E-value=1.1e-27 Score=136.93 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=75.1
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcCC
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGN 89 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g~ 89 (101)
|.+|++|++++||+|++++.+|++++++|..+|++.+++ .++.+.+.+|..++|+||+||++|||++++.+++.+|+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~ 77 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGG 77 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCC
Confidence 347999999999999999999999999999999987653 34467778899999999999999999999999999999
Q ss_pred chhhcc
Q 034205 90 LIPLLK 95 (101)
Q Consensus 90 L~~~l~ 95 (101)
|.++|+
T Consensus 78 l~~~~~ 83 (83)
T PRK10638 78 LDPLLK 83 (83)
T ss_pred HHHHhC
Confidence 999875
No 8
>PTZ00062 glutaredoxin; Provisional
Probab=99.95 E-value=6.9e-28 Score=157.47 Aligned_cols=92 Identities=24% Similarity=0.449 Sum_probs=84.8
Q ss_pred hHHHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 2 DKVTRLASEKGVVIFSK-----SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
++++++++.++|++|++ |+||+|++++.+|++++++|.++||+.++ +.+++|.+.+|++++|+|||||++||
T Consensus 104 ~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~~~~l~~~sg~~TvPqVfI~G~~IG 180 (204)
T PTZ00062 104 EKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DLREELKVYSNWPTYPQLYVNGELIG 180 (204)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 46889999999999999 58999999999999999999999998664 45678889999999999999999999
Q ss_pred chHHHHhHHHcCCchhhccc
Q 034205 77 STNEVMSLHLSGNLIPLLKP 96 (101)
Q Consensus 77 g~~~~~~~~~~g~L~~~l~~ 96 (101)
|+|++.+++++|+|.++|.+
T Consensus 181 G~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 181 GHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred ChHHHHHHHHcCChhhhhhh
Confidence 99999999999999998864
No 9
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.95 E-value=5.6e-27 Score=133.46 Aligned_cols=82 Identities=35% Similarity=0.611 Sum_probs=77.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC--cEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcCCc
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVH--PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNL 90 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~--~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g~L 90 (101)
|++|+++|||+|++++++|++++++ |..++++.+++..++++++.+.+|..++|++|+||+++||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999999 99999999877777788888889999999999999999999999999999999
Q ss_pred hhhc
Q 034205 91 IPLL 94 (101)
Q Consensus 91 ~~~l 94 (101)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9875
No 10
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.95 E-value=3e-27 Score=133.77 Aligned_cols=79 Identities=30% Similarity=0.564 Sum_probs=72.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcCCchh
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIP 92 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g~L~~ 92 (101)
|++|++++||+|.+++++|++++++|++++++.++. .++++.+.+|..++|+||+||+++||++++.+++++|+|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 689999999999999999999999999999997653 34467777899999999999999999999999999999998
Q ss_pred hc
Q 034205 93 LL 94 (101)
Q Consensus 93 ~l 94 (101)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 75
No 11
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.94 E-value=2.7e-26 Score=130.27 Aligned_cols=82 Identities=43% Similarity=0.772 Sum_probs=76.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcCCch
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLI 91 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g~L~ 91 (101)
+|++|+++|||+|.+++.+|++++++|+.++++.+++..++++++++.+|..++|++|++|+++||++++.++.++|+|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58999999999999999999999999999999998877777778888899999999999999999999999999999998
Q ss_pred hh
Q 034205 92 PL 93 (101)
Q Consensus 92 ~~ 93 (101)
++
T Consensus 81 ~~ 82 (82)
T cd03419 81 KL 82 (82)
T ss_pred CC
Confidence 64
No 12
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.2e-27 Score=134.68 Aligned_cols=94 Identities=27% Similarity=0.451 Sum_probs=86.8
Q ss_pred hHHHhhhcCCcEEEEecC-----CChhHHHHHHHHHhcC-CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 2 DKVTRLASEKGVVIFSKS-----SCCLCYAVNILFQELG-VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~-----~Cp~C~~~~~~l~~~~-i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
+++++.++.++|++|.+. .|+++.++..+|..+| ++|..+||-.++ ++|+.|+++++|+|+||+||+|++|
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~---eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDP---EIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCH---HHHhccHhhcCCCCCceeeECCEEe
Confidence 678899999999999984 6999999999999999 799999998775 4677999999999999999999999
Q ss_pred echHHHHhHHHcCCchhhcccCC
Q 034205 76 GSTNEVMSLHLSGNLIPLLKPYQ 98 (101)
Q Consensus 76 gg~~~~~~~~~~g~L~~~l~~~g 98 (101)
||+|.+.+|+++|+|+.+|++++
T Consensus 83 GG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 83 GGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred ccHHHHHHHHHcchHHHHHHhcC
Confidence 99999999999999999998764
No 13
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.6e-26 Score=129.13 Aligned_cols=79 Identities=28% Similarity=0.498 Sum_probs=71.1
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcCCch
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLI 91 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g~L~ 91 (101)
.|+||++++||||.+++++|++.|++|.+++++.++. .+.++++++.+|.+++|+||+||+++||++++.+++..|.|.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l~ 80 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKLD 80 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccCC
Confidence 6899999999999999999999999999999998875 445567777779999999999999999999999999888763
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.93 E-value=1.6e-25 Score=139.80 Aligned_cols=83 Identities=27% Similarity=0.416 Sum_probs=73.6
Q ss_pred cEEEEecC------CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCC----CCCccEEEECCeEeechHHH
Q 034205 12 GVVIFSKS------SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGC----NAPVPAVFISGQLVGSTNEV 81 (101)
Q Consensus 12 ~vvif~~~------~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g----~~~vP~vfv~g~~igg~~~~ 81 (101)
+|+||+++ +||+|.+++.+|++++|+|.++||+.+++. +++|++..| +.++|+|||+|++|||++++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~---~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGF---REELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHH---HHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 999999999999999999999999977543 335555544 48999999999999999999
Q ss_pred HhHHHcCCchhhcccC
Q 034205 82 MSLHLSGNLIPLLKPY 97 (101)
Q Consensus 82 ~~~~~~g~L~~~l~~~ 97 (101)
.+++++|+|.++|+.+
T Consensus 78 ~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 78 LRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHcCCHHHHHhhc
Confidence 9999999999999875
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.93 E-value=7e-25 Score=122.67 Aligned_cols=74 Identities=24% Similarity=0.537 Sum_probs=65.1
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCC-CccEEEECCeEeechHHHHhHHHcC
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNA-PVPAVFISGQLVGSTNEVMSLHLSG 88 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~-~vP~vfv~g~~igg~~~~~~~~~~g 88 (101)
+|++|++++||+|.+++.+|++++++|++++|+.++ +.++.+.+.+|.. ++|+||+||+++||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~---~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP---ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH---HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 489999999999999999999999999999998763 3334565656766 9999999999999999999999987
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.92 E-value=1.7e-24 Score=120.89 Aligned_cols=71 Identities=31% Similarity=0.502 Sum_probs=64.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+|++|+.++||+|++|+.+|++++++|+.+|++.++.. ++++.+.+|..++|+||+||++|||++++.+++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~---~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPER---KAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHH---HHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 68999999999999999999999999999999976643 447788889999999999999999999999875
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.91 E-value=2.8e-24 Score=121.84 Aligned_cols=75 Identities=27% Similarity=0.516 Sum_probs=65.4
Q ss_pred hhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 7 LASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 7 ~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+-++++|++|+++|||+|++++++|+++|++|+.++++.+++.. ++...+|..++|+||+||+++||++++.++.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 44678999999999999999999999999999999998765443 4555689999999999999999999998753
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.91 E-value=6.7e-24 Score=118.17 Aligned_cols=70 Identities=27% Similarity=0.539 Sum_probs=62.5
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+|+||++++||+|.+++.+|++++++|+.++++.++... .+...+|..++|+||+||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~----~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGR----SLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHH----HHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 689999999999999999999999999999998776332 5566689999999999999999999998863
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.91 E-value=7.3e-24 Score=150.85 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=77.8
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHH-----hhCCCCCccEEEECCeEeechHHHHhH
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALM-----RMGCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~-----~~~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
+.+|+||+++|||+|+++|++|++.|++|+++||+.++...++.+.+. ..+|..++|+|||||++|||++++..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~- 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA- 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH-
Confidence 357999999999999999999999999999999997776555444432 23688999999999999999999987
Q ss_pred HHcCCchhhcccCCCCC
Q 034205 85 HLSGNLIPLLKPYQPFS 101 (101)
Q Consensus 85 ~~~g~L~~~l~~~g~~~ 101 (101)
.+|+|.++|+..|+.+
T Consensus 80 -~~g~l~~~~~~~~~~~ 95 (410)
T PRK12759 80 -RAGEVIARVKGSSLTT 95 (410)
T ss_pred -HhCCHHHHhcCCcccc
Confidence 8999999999998753
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.90 E-value=4.1e-23 Score=118.78 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=59.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHHHHHHhhCCC--CCccEEEECCeEeechHHHHhHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEMEKALMRMGCN--APVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~~~l~~~~g~--~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
|+||+++|||+|.+|+++|++++ ++|+.+|++.+... ++++...+|. .++|+||+||+++||++++.+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~---~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS---KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH---HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 78999999999999999999985 56777777743311 2345666675 89999999999999999999998
Q ss_pred HcC
Q 034205 86 LSG 88 (101)
Q Consensus 86 ~~g 88 (101)
+++
T Consensus 79 ~~~ 81 (86)
T TIGR02183 79 KEN 81 (86)
T ss_pred Hhc
Confidence 764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.89 E-value=1.1e-22 Score=116.57 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=61.7
Q ss_pred cEEEEecCCChhHHHHHHHHHh-----cCCCcEEEEecCCCCcHHHHHHHHhhCCC--CCccEEEECCeEeechHHHHhH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE-----LGVHPMVYEIDQDPEGKEMEKALMRMGCN--APVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~-----~~i~~~~~~vd~~~~~~~~~~~l~~~~g~--~~vP~vfv~g~~igg~~~~~~~ 84 (101)
+|++|+++|||+|++|+++|++ .+++|+.+|++.+.... +++....|. .++|+||+||+++||++++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~---~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISK---ADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHH---HHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999 78999999998654222 245555554 8999999999999999999998
Q ss_pred HHc
Q 034205 85 HLS 87 (101)
Q Consensus 85 ~~~ 87 (101)
.+.
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 764
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.87 E-value=1.1e-21 Score=107.86 Aligned_cols=71 Identities=32% Similarity=0.617 Sum_probs=64.2
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+|++|++++||+|++++.+|++++++|..+|++.+++ .++.+.+.+|..++|++|+||+.+||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999987664 3457777789999999999999999999998875
No 23
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.5e-21 Score=127.41 Aligned_cols=92 Identities=21% Similarity=0.439 Sum_probs=85.2
Q ss_pred HHHhhhcCCcEEEEecC-----CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeec
Q 034205 3 KVTRLASEKGVVIFSKS-----SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGS 77 (101)
Q Consensus 3 ~~~~~~~~~~vvif~~~-----~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg 77 (101)
.+.++++.++|++|.++ .|++.+++..+|++++++|..+||-.+++ +|+.++.++.|+|+||+||+|+++||
T Consensus 131 ~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 131 RLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCCCCccceeECCEeccC
Confidence 57788999999999995 69999999999999999999999997765 66799999999999999999999999
Q ss_pred hHHHHhHHHcCCchhhcccC
Q 034205 78 TNEVMSLHLSGNLIPLLKPY 97 (101)
Q Consensus 78 ~~~~~~~~~~g~L~~~l~~~ 97 (101)
+|.+.+|+++|+|...|+++
T Consensus 208 lDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred cHHHHHHhhcccHHHHhhcC
Confidence 99999999999999998764
No 24
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.84 E-value=9.4e-21 Score=110.02 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=67.9
Q ss_pred EEEEecCC------ChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCC----CCCccEEEECCeEeechHHHH
Q 034205 13 VVIFSKSS------CCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGC----NAPVPAVFISGQLVGSTNEVM 82 (101)
Q Consensus 13 vvif~~~~------Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g----~~~vP~vfv~g~~igg~~~~~ 82 (101)
|++|+++- =-.|++++.+|+.++|+|+++||+.+++.++ ++.+.+| ..++|+||++|++|||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~---em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQ---WMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHH---HHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 67787763 3469999999999999999999998766443 5555544 589999999999999999999
Q ss_pred hHHHcCCchhhcc
Q 034205 83 SLHLSGNLIPLLK 95 (101)
Q Consensus 83 ~~~~~g~L~~~l~ 95 (101)
+++++|+|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999886
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.84 E-value=5.8e-21 Score=102.84 Aligned_cols=60 Identities=28% Similarity=0.580 Sum_probs=54.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
|++|++++||+|.+++++|++.+++|+++||+.++ +.++++++.+|..++|+||+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE---EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH---HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch---hHHHHHHHHcCCCccCEEEECCEEC
Confidence 78999999999999999999999999999999886 3455777777999999999999986
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.79 E-value=2.7e-19 Score=99.57 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=54.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCe-EeechH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQ-LVGSTN 79 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~-~igg~~ 79 (101)
|++|++++||+|++++++|++++++|+++||+.++... +.+.. .|..++|+++++|. .+||++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~---~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAI---DYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHH-cCCcccCEEEECCCcEEeccC
Confidence 58999999999999999999999999999999776543 35554 48899999999775 999996
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.79 E-value=5.1e-19 Score=100.71 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=56.3
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~ 79 (101)
+|++|++++||+|++++.+|++.|++|+++|++.+++..+ .+.. .|..++|++++++..++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~---~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAE---TLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCCCCcCEEEECCEEEecCC
Confidence 6899999999999999999999999999999997764433 4444 58899999999999999995
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.68 E-value=1.8e-16 Score=87.30 Aligned_cols=65 Identities=12% Similarity=0.316 Sum_probs=55.2
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~ 79 (101)
+|++|+.+|||+|++++.+|++.+++|..+|++.++.. .+.+.+..|..++|+++++|+.++|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~---~~~~~~~~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAA---REEVLKVLGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHH---HHHHHHHhCCCcccEEEECCEEEeeCC
Confidence 47899999999999999999999999999999865432 234555568999999999999998875
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.65 E-value=9.5e-16 Score=84.28 Aligned_cols=66 Identities=24% Similarity=0.460 Sum_probs=56.7
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNE 80 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~ 80 (101)
+|++|+.+|||+|++++.+|.+.+++|..++++.++. ..+.+.+.++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~---~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPE---ALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHH---HHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 4899999999999999999999999999999986543 33456666788999999999999999874
No 30
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.62 E-value=1.5e-15 Score=84.65 Aligned_cols=65 Identities=17% Similarity=0.381 Sum_probs=52.7
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhC-CCCCccEEEE-CCeEeechH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG-CNAPVPAVFI-SGQLVGSTN 79 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~-g~~~vP~vfv-~g~~igg~~ 79 (101)
+|++|+++|||+|++++.+|++.+++|..+|++.++... +.+.+.+ +..++|++++ +|..+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~---~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAA---DRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHH---HHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 489999999999999999999999999999998765543 3555555 8899999976 567766543
No 31
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.8e-15 Score=100.61 Aligned_cols=87 Identities=28% Similarity=0.434 Sum_probs=73.8
Q ss_pred CcEEEEecC------CChhHHHHHHHHHhcCCCcEEEEecCCCCcHH-HHHHHHhhCCCCCccEEEECCeEeechHHHHh
Q 034205 11 KGVVIFSKS------SCCLCYAVNILFQELGVHPMVYEIDQDPEGKE-MEKALMRMGCNAPVPAVFISGQLVGSTNEVMS 83 (101)
Q Consensus 11 ~~vvif~~~------~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~-~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~ 83 (101)
..||+|+++ +--.|..++.+|+..+|.|.+.||+.+....+ +++.+..-....++|+|||+|++|||.+++.+
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhh
Confidence 469999987 67789999999999999999999999876443 44444432346789999999999999999999
Q ss_pred HHHcCCchhhcccC
Q 034205 84 LHLSGNLIPLLKPY 97 (101)
Q Consensus 84 ~~~~g~L~~~l~~~ 97 (101)
|++.|+|..+|+..
T Consensus 211 LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 211 LNEEGKLGKLLKGI 224 (281)
T ss_pred hhhcchHHHHHhcC
Confidence 99999999999764
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.59 E-value=5.3e-15 Score=80.82 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=46.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL-----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~-----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
.|++|+++|||+|++++++|+++ ++++..+|++.+++ +.+..|..++|+++++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~-------l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD-------LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh-------HHHHcCCcccCEEEECCEEEE
Confidence 58999999999999999999876 56777777765432 334468899999999999875
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.46 E-value=4.1e-13 Score=78.78 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=58.8
Q ss_pred cEEEEecCCCh------hHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhC---------CCCCccEEEECCeEee
Q 034205 12 GVVIFSKSSCC------LCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG---------CNAPVPAVFISGQLVG 76 (101)
Q Consensus 12 ~vvif~~~~Cp------~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~---------g~~~vP~vfv~g~~ig 76 (101)
.|.||+++.-. .|+++..+|+..+|+|+.+||..+++.++ .+.+.. +..-.|+||++++++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~---~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQ---WMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHH---HHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHH---HHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 46778776433 47799999999999999999998766554 444333 3455689999999999
Q ss_pred chHHHHhHHHcCCchhhcc
Q 034205 77 STNEVMSLHLSGNLIPLLK 95 (101)
Q Consensus 77 g~~~~~~~~~~g~L~~~l~ 95 (101)
+++++.++.++++|.+.|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999886
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.38 E-value=5.8e-12 Score=70.65 Aligned_cols=71 Identities=13% Similarity=0.292 Sum_probs=57.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE--CCeEeechHHHHhHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI--SGQLVGSTNEVMSLHL 86 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv--~g~~igg~~~~~~~~~ 86 (101)
+++|+.++||+|++++.+|.++|++|+.++++..+.. ...+.+.++..++|++.. +|..+.+.+.+.+..+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~---~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPK---RDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHH---HHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 6899999999999999999999999999998643321 224556678899999987 3678899888877654
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.38 E-value=7.1e-12 Score=67.59 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=58.2
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
++|+.++||+|++++.+|+..+++|+.++++..+.... .+.+.++..++|+++.+|..+++...+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999987655433 355667899999999999999999877654
No 36
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.36 E-value=3.7e-12 Score=73.56 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=52.1
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQEL-----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
+.++++-++-.|.+|+.+|||+|..+.++++++ ++++..+|++..++ +.+.+|..++|++++||+.++
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e-------~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD-------EVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH-------HHHHcCCccCCEEEECCEEEE
Confidence 445655555679999999999999999998765 56777788775542 233468999999999998654
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.32 E-value=1.7e-11 Score=67.55 Aligned_cols=68 Identities=13% Similarity=0.255 Sum_probs=55.4
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC-CeEeechHHHHhHHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS-GQLVGSTNEVMSLHL 86 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~-g~~igg~~~~~~~~~ 86 (101)
.+|+.++||+|++++.+|..+|++|+.+.++..+... .+ +.++..++|+++.+ |..++++..+.+..+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~----~~-~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEAT----PI-RMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHH----HH-HhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 5899999999999999999999999999887543221 22 34677899999987 899999998887653
No 38
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.31 E-value=3.6e-11 Score=67.16 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=55.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC----CeEeechHHHHhHHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS----GQLVGSTNEVMSLHL 86 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~----g~~igg~~~~~~~~~ 86 (101)
++.+|+.+.||+|++++.+|.++|++|+.++++... .. .++ .++..++|+++.+ |..+.....+.+..+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~----~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RK----EIK-WSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HH----HHH-HhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 578999999999999999999999999999886422 11 232 3678899999987 788888888877643
No 39
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.28 E-value=3.9e-11 Score=67.45 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=42.6
Q ss_pred cEEEEecCCChhHHHHHHHHHh----cCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCe-Eeec
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE----LGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQ-LVGS 77 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~----~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~-~igg 77 (101)
.|++|+++|||+|+.++..|.+ .+..+....||.+.+.. +.+..|..++|+++++|+ .+.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~vPt~~~~g~~~~~G 67 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-----KAMEYGIMAVPAIVINGDVEFIG 67 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-----HHHHcCCccCCEEEECCEEEEec
Confidence 5889999999999999999865 34334444454433322 223368899999999997 3434
No 40
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.28 E-value=9.7e-11 Score=64.56 Aligned_cols=67 Identities=12% Similarity=0.328 Sum_probs=55.6
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC-CeEeechHHHHhH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS-GQLVGSTNEVMSL 84 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~-g~~igg~~~~~~~ 84 (101)
++|+.++||+|++++.+|.++|++|+.++++...... .+.+.++..++|++..+ |..+.....+.+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~----~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPA----EMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCH----HHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 6899999999999999999999999999998754333 34556788999999996 8888887766554
No 41
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.24 E-value=1.8e-10 Score=63.41 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=57.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+++|+.++||+|++++.+|...|++|+.++++...... .+.+.++..++|++..+|..+.....+....+
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPE----DLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCH----HHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 47899999999999999999999999999888654333 34455778899999989988888887777643
No 42
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.18 E-value=5.5e-10 Score=64.25 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=58.4
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC-CeEeechHHHHhH
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS-GQLVGSTNEVMSL 84 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~-g~~igg~~~~~~~ 84 (101)
...+++|+.+.||+|++++.+|...|++|+.++++..... +.+.+.++..++|++.++ |..+.....+.++
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~----~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP----DWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc----HHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 3468999999999999999999999999999998864322 235566788999999998 8888888777654
No 43
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.18 E-value=1.9e-10 Score=70.01 Aligned_cols=76 Identities=11% Similarity=0.186 Sum_probs=49.9
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHHHHHhc----CCCcEEEEecCCC--C---cHHHHHHHHhh---CCCCCccEE
Q 034205 3 KVTRLASEKG--VVIFSKSSCCLCYAVNILFQEL----GVHPMVYEIDQDP--E---GKEMEKALMRM---GCNAPVPAV 68 (101)
Q Consensus 3 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~i~~~~~~vd~~~--~---~~~~~~~l~~~---~g~~~vP~v 68 (101)
.++++++... ++.|+++|||+|+.+.+.|.+. ++++.++|++.+. + ..++++...++ ++..++|++
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 4566665543 7789999999999998888654 5778888888643 1 11333333332 345569987
Q ss_pred --EECCeEeech
Q 034205 69 --FISGQLVGST 78 (101)
Q Consensus 69 --fv~g~~igg~ 78 (101)
|-+|+.++..
T Consensus 95 v~~k~Gk~v~~~ 106 (122)
T TIGR01295 95 VHITDGKQVSVR 106 (122)
T ss_pred EEEeCCeEEEEE
Confidence 5688766544
No 44
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.18 E-value=1.8e-10 Score=64.54 Aligned_cols=54 Identities=22% Similarity=0.505 Sum_probs=40.5
Q ss_pred EEEEecCCChhHHHHHH----HHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 13 VVIFSKSSCCLCYAVNI----LFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~----~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
|.+|+ +|||+|+.+.. ++++++.++..++++. ..+ ..+ .|..++|++++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~----a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNE----ILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHH----HHH-cCCCcCCEEEECCEEE
Confidence 55666 99999999955 5677888888888883 222 122 5899999999999754
No 45
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.15 E-value=2.8e-10 Score=62.57 Aligned_cols=71 Identities=11% Similarity=0.224 Sum_probs=54.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE-CCeEeechHHHHhH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI-SGQLVGSTNEVMSL 84 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv-~g~~igg~~~~~~~ 84 (101)
+++|+.++||+|++++.+|..++++|+.+.++...... ....+.+.++..++|++.+ +|..+.....+...
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQ-RSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCcc-CCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 36899999999999999999999999999887543211 1124556678899999997 66777777766554
No 46
>PHA02125 thioredoxin-like protein
Probab=99.14 E-value=2.1e-10 Score=64.02 Aligned_cols=55 Identities=15% Similarity=0.295 Sum_probs=42.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
|++|+++|||+|+.++++|++. .+.+++||.++.. .+.+..+..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~-----~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGV-----ELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCH-----HHHHHcCCceeCeEE-CCEEE
Confidence 7899999999999999999865 4667777765542 344446889999987 77644
No 47
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.12 E-value=1e-09 Score=61.10 Aligned_cols=68 Identities=10% Similarity=0.276 Sum_probs=58.7
Q ss_pred EEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 15 IFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+|+.++||+|++++-+|..+|++|+.++++...... .+.+.++..++|++..||..+.+...+.+..+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~----~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRP----EFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSH----HHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchh----HHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 689999999999999999999999999998665433 45666789999999999999999998887654
No 48
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.11 E-value=1.1e-09 Score=60.50 Aligned_cols=72 Identities=13% Similarity=0.251 Sum_probs=56.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+++|+.+.||+|++++.+|.+.|++|+.+.++...... ..+.+.+.+....+|++..+|..+.....+....
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEH-LKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCc-CCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 36899999999999999999999999999988543221 1224556678889999999998888777776543
No 49
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=99.09 E-value=1.5e-10 Score=69.30 Aligned_cols=45 Identities=24% Similarity=0.455 Sum_probs=37.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcH-HHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGK-EMEKALM 57 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~-~~~~~l~ 57 (101)
|+||+.++||+|++|+++|++.|++|+++|+..++... ++.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 57999999999999999999999999999998876543 4444443
No 50
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.05 E-value=1.2e-09 Score=65.47 Aligned_cols=60 Identities=23% Similarity=0.443 Sum_probs=41.7
Q ss_pred HHhhhcCCcEEEE-ecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 4 VTRLASEKGVVIF-SKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 4 ~~~~~~~~~vvif-~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
.+++.+..++++| +++|||+|+.++++|++.. +++..+|++..+ .+...++..++|++++
T Consensus 16 ~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-------~l~~~~~v~~vPt~~i 81 (113)
T cd02975 16 FKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-------EKAEKYGVERVPTTIF 81 (113)
T ss_pred HHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-------HHHHHcCCCcCCEEEE
Confidence 3445555556555 7899999999999997764 345555655432 3445579999999977
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.04 E-value=2.8e-09 Score=58.51 Aligned_cols=71 Identities=18% Similarity=0.351 Sum_probs=55.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
+++|+.+.||+|.+++.+|...|++|+.++++...... ..+.+.+.+...++|++..+|..+.....+.+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGET-RTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCccc-CCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 36899999999999999999999999999988533211 112445567788999999999988888776654
No 52
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=99.03 E-value=1.1e-09 Score=64.83 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=36.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCc-HHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEG-KEMEKAL 56 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~-~~~~~~l 56 (101)
|++|++++||+|++++.+|++.|++|+++|+..++.. .++.+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELL 45 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Confidence 5799999999999999999999999999999876554 3444443
No 53
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.99 E-value=4.4e-09 Score=59.58 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=38.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECC
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELG----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g 72 (101)
+|++|++++|+.|..|+.+|.+.. +.++.+||+.++ .+...++ ..+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~-------~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDP-------ELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTH-------HHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCH-------HHHHHhc-CCCCEEEEcC
Confidence 589999999999999999999764 334566666333 2334466 5899999999
No 54
>PHA02278 thioredoxin-like protein
Probab=98.99 E-value=5.9e-09 Score=61.69 Aligned_cols=71 Identities=14% Similarity=0.321 Sum_probs=46.6
Q ss_pred hHHHhhhcCC-c-EEEEecCCChhHHHHHHHHHhcC------CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EEC
Q 034205 2 DKVTRLASEK-G-VVIFSKSSCCLCYAVNILFQELG------VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FIS 71 (101)
Q Consensus 2 ~~~~~~~~~~-~-vvif~~~~Cp~C~~~~~~l~~~~------i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~ 71 (101)
+.+++.++.. + ++-|+++||++|+.+.+.+++.. +++..+|+|.++... +.+.+..+..++|++ |-|
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~---~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDR---EKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccccc---HHHHHHCCCccccEEEEEEC
Confidence 3455555543 3 45699999999999999886642 345666666543211 134455688999986 568
Q ss_pred CeEe
Q 034205 72 GQLV 75 (101)
Q Consensus 72 g~~i 75 (101)
|+.+
T Consensus 82 G~~v 85 (103)
T PHA02278 82 GQLV 85 (103)
T ss_pred CEEE
Confidence 8855
No 55
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.94 E-value=4.3e-09 Score=64.77 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=33.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCc
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEG 49 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~ 49 (101)
|+||+.++||+|++|+.+|++.|++|+++|+..++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~ 38 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLT 38 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhh
Confidence 7899999999999999999999999999999866543
No 56
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.90 E-value=1.1e-08 Score=61.59 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=44.8
Q ss_pred HHHhhhc--CC-c-EEEEecCCChhHHHHHHHHHhcC------CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EE
Q 034205 3 KVTRLAS--EK-G-VVIFSKSSCCLCYAVNILFQELG------VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FI 70 (101)
Q Consensus 3 ~~~~~~~--~~-~-vvif~~~~Cp~C~~~~~~l~~~~------i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv 70 (101)
.+.+.+. .. + |+-|+++|||.|+.+...|+++. +.+-.+|+|..+ .+....+..++|++ |-
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-------~la~~~~V~~iPTf~~fk 76 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-------DFNKMYELYDPPTVMFFF 76 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-------HHHHHcCCCCCCEEEEEE
Confidence 4555554 22 2 45599999999999999997653 234455555443 23444689999987 56
Q ss_pred CCeEee
Q 034205 71 SGQLVG 76 (101)
Q Consensus 71 ~g~~ig 76 (101)
||+.++
T Consensus 77 ~G~~v~ 82 (114)
T cd02954 77 RNKHMK 82 (114)
T ss_pred CCEEEE
Confidence 888764
No 57
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.90 E-value=2.3e-08 Score=57.92 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 19 SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
..||||++++-+|.++|++|+.++++.....+ .+.+.+....+|++..+|..+...+.+.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~----~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPE----DLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCH----HHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 47999999999999999999999998765444 34556778899999999999999988887754
No 58
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.89 E-value=2.2e-08 Score=55.55 Aligned_cols=71 Identities=14% Similarity=0.297 Sum_probs=56.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
+++|+.+.||+|++++-+|.++|++|+.+.++...... ..+.+.+.+....+|++..||..+.....+..+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH-NEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc-CCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 47899999999999999999999999999887643211 112456678889999999999988888777654
No 59
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.88 E-value=6e-09 Score=62.86 Aligned_cols=45 Identities=16% Similarity=0.387 Sum_probs=37.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHH-HHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKE-MEKALM 57 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~-~~~~l~ 57 (101)
|++|+.++||+|++|+.+|++.|++|+.+|+..++...+ +.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence 579999999999999999999999999999987665443 444333
No 60
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.86 E-value=5.1e-08 Score=54.02 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=58.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+++|+.+.||+|++++-+|...|++|+.+.++..... ...+.+.+.+....+|++..+|..+.....+.+...
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 5799999999999999999999999999888764321 111245566788999999999998988888877653
No 61
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.86 E-value=9e-09 Score=67.92 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=39.2
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCe
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQ 73 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~ 73 (101)
..|++|+++|||+|..++.+++++. +.+..+|++..+ .+...+|..++|+++++++
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-------~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-------DLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-------HHHHHhCCccCCEEEEecC
Confidence 3567799999999999999987753 333444444332 2333468999999988754
No 62
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.86 E-value=6.9e-08 Score=53.34 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=55.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCC-CCCccEEEECCeEeechHHHHhHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGC-NAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g-~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+.+|+.+.||+|.+++.+|...|++|+.++++...... .+.+.+. ...+|++..+|..+.....+.+..+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~----~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSE----LLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCH----HHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 36899999999999999999999999998887643222 2334455 4799999999988888887776543
No 63
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.85 E-value=3.8e-08 Score=54.16 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 20 SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+||+|.+++.+|+..|++|+.++++... .+....+|++..+|+.+.++..+.+..+
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 8999999999999999999999987532 2456789999999999999988877654
No 64
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.83 E-value=2.2e-08 Score=61.65 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=37.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCC-cHHHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPE-GKEMEKALM 57 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~-~~~~~~~l~ 57 (101)
|+||+.++|+.|++|+.+|++.|++|+.+|+..++- ..++.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence 789999999999999999999999999999986654 333444443
No 65
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.82 E-value=2e-08 Score=61.91 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=36.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCc-HHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEG-KEMEKAL 56 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~-~~~~~~l 56 (101)
|+||+.++|+.|++|+.+|++.|++|+++|+..++-. .++.+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 7899999999999999999999999999999865543 3343333
No 66
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.81 E-value=2.2e-08 Score=60.27 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=37.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCC-cHHHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPE-GKEMEKALM 57 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~-~~~~~~~l~ 57 (101)
|++|+.++||+|++++.+|++.|++|+.+|+..++. ..++.+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 789999999999999999999999999999976643 334444443
No 67
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.79 E-value=1.5e-08 Score=74.43 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=48.5
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCC-----CcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGV-----HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i-----~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
+.++++-++..|.+|.+++||||..+...+++..+ ..+.+|....++ +.+.++..+||.+|+||+.+.
T Consensus 109 ~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~-------~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 109 EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD-------EVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh-------HHHhcCCcccCEEEECCcEEE
Confidence 34555555667999999999999999999987643 334444333332 333468899999999998654
No 68
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.79 E-value=6.5e-08 Score=56.71 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=40.5
Q ss_pred hHHHhhhcCCc--EEEEecCCChhHHHHHHHH-------HhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 2 DKVTRLASEKG--VVIFSKSSCCLCYAVNILF-------QELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 2 ~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l-------~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
+.+.++++.++ ++.|+++||++|+.+...+ ..++-.+..+.+|.+.+.... ..+.+..+..++|+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEI-TALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHH-HHHHHHcCCCCCCEEE
Confidence 34566666665 5679999999999988654 122213444444433322211 2445556889999874
No 69
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.79 E-value=2.4e-08 Score=59.24 Aligned_cols=46 Identities=13% Similarity=0.275 Sum_probs=38.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC-CcHHHHHHHHh
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKALMR 58 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~-~~~~~~~~l~~ 58 (101)
|++|+.++|+.|++|+.+|++.|++|+++|+..++ ...++.+.+..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999998765 44445555443
No 70
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.77 E-value=8.1e-08 Score=57.57 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHhhhcCC-c-EEEEecCCChhHHHHHHHHHhcCC---CcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034205 3 KVTRLASEK-G-VVIFSKSSCCLCYAVNILFQELGV---HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLV 75 (101)
Q Consensus 3 ~~~~~~~~~-~-vvif~~~~Cp~C~~~~~~l~~~~i---~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~i 75 (101)
.+.+.++.. . ++.|+.+||+.|+.+...|.++.- ....+.||.+... .+.+..+..++|++ |-+|+.+
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-----~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-----FLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-----HHHHHCCCccCCEEEEEECCEEE
Confidence 445555443 3 556999999999999999876421 1244444444332 23344588999986 5689866
Q ss_pred ech
Q 034205 76 GST 78 (101)
Q Consensus 76 gg~ 78 (101)
+-.
T Consensus 89 ~~~ 91 (113)
T cd02989 89 DRI 91 (113)
T ss_pred EEE
Confidence 443
No 71
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.75 E-value=1.4e-07 Score=51.87 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=53.1
Q ss_pred EEEecCCChhHHHHHHHHHh--cCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE-CCeEeechHHHHhH
Q 034205 14 VIFSKSSCCLCYAVNILFQE--LGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI-SGQLVGSTNEVMSL 84 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~--~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv-~g~~igg~~~~~~~ 84 (101)
.+|+.+.||+|.+++.+|.. .+++|+.+.++...... .+.+.++..++|++.. ||..+.....+.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDE----SLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCCh----HHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 68999999999999999999 89999999988543333 3344577889999985 78888887776654
No 72
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.75 E-value=8.3e-09 Score=75.74 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=47.9
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCC-----cEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVH-----PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~-----~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
+.++++-++..|.+|.+++||||..++..++++.+. .+.+|....+ .+.+.++..+||.+|+||+.++
T Consensus 110 ~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~-------~~~~~~~v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 110 DRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ-------DEVEALGIQGVPAVFLNGEEFH 182 (515)
T ss_pred HHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH-------HHHHhcCCcccCEEEECCcEEE
Confidence 345555556679999999999999999999877543 2333322222 2334468889999999998654
Q ss_pred c
Q 034205 77 S 77 (101)
Q Consensus 77 g 77 (101)
.
T Consensus 183 ~ 183 (515)
T TIGR03140 183 N 183 (515)
T ss_pred e
Confidence 3
No 73
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.74 E-value=2.6e-07 Score=51.10 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=57.1
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
++++|+.+.|+.|.+++.+|...|++|+.+.++.. ...+.+...+...++|++..+|..+.....+....
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 46789988999999999999999999999988752 12234556677889999999999999888877664
No 74
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.7e-09 Score=64.29 Aligned_cols=56 Identities=29% Similarity=0.406 Sum_probs=40.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC------CcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGV------HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLV 75 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i------~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~i 75 (101)
+|.|+++||..|+.+...|+++.- .+-.+|+|++++ +..-++...+|++ |.||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-------la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-------LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-------hHhhcceeeeeEEEEEECCEEe
Confidence 567999999999999999987643 234455555543 3334689999987 6799754
No 75
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.73 E-value=2.3e-08 Score=55.89 Aligned_cols=54 Identities=26% Similarity=0.505 Sum_probs=36.8
Q ss_pred cEEEEecCCChhHHHHHHHH----HhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeE
Q 034205 12 GVVIFSKSSCCLCYAVNILF----QELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQL 74 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l----~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ 74 (101)
.|.+| .++||+|..+...+ .+.+++++.+++ .+..+ + ..+|..++|+++|||+.
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~----~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEE----I-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHH----H-HHTT-SSSSEEEETTEE
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHH----H-HHcCCCCCCEEEECCEE
Confidence 35664 56699999887766 455766666665 33332 3 33699999999999984
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.70 E-value=9.1e-08 Score=55.71 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=43.5
Q ss_pred HHHhhhcCCcEEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE--CCe
Q 034205 3 KVTRLASEKGVVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI--SGQ 73 (101)
Q Consensus 3 ~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv--~g~ 73 (101)
.++++++...++.|+++|||+|+.+.+.+.+.. ..+....+|.+.+. .+.+..+..++|++++ +|+
T Consensus 10 ~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 10 NWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-----GLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred hHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-----hHHHHcCCcccCEEEEeCCCC
Confidence 456677777788899999999999999886542 22333334333222 2333457899999864 554
No 77
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.70 E-value=1.7e-07 Score=51.37 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=55.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
++|+.+.||.|.+++.+|...|++|+.+.++..+... ..+.+.+.+....+|++..+|..+.....+...
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQ-LSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCc-CChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 6888899999999999999999999998888643211 112445567889999999999988887777654
No 78
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.68 E-value=4.6e-08 Score=72.51 Aligned_cols=65 Identities=23% Similarity=0.355 Sum_probs=48.0
Q ss_pred HHHhhhcCCcEEEEecCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeE
Q 034205 3 KVTRLASEKGVVIFSKSSCCLCYAVNILFQEL-----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQL 74 (101)
Q Consensus 3 ~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ 74 (101)
.++++-++..|.+|.+++||+|..+.+.+++. ++..+.+|+...++ +.+.++..++|.++|||+.
T Consensus 470 ~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~-------~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 470 KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD-------LKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH-------HHHhCCceecCEEEECCEE
Confidence 44444445578999999999999988877553 56777777765542 3334689999999999963
No 79
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.68 E-value=1.3e-07 Score=56.80 Aligned_cols=55 Identities=15% Similarity=0.340 Sum_probs=39.3
Q ss_pred EEEecCCChhHHHHHHHHHhcC------CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034205 14 VIFSKSSCCLCYAVNILFQELG------VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLV 75 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~------i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~i 75 (101)
+-|+++|||.|+.+-++|.++. +.+-.+|+|+.++ +.+..+....|+. |-+|+|+
T Consensus 19 VdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-------va~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 19 LRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-------YTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-------HHHhcCceeCcEEEEEECCcEE
Confidence 3499999999999999998764 3345566665543 3334577778864 6788876
No 80
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.66 E-value=2.8e-07 Score=51.61 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=40.0
Q ss_pred cEEEEecCCChhHHHHHHHHHh-----cCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE--CCeEe
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE-----LGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI--SGQLV 75 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~-----~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv--~g~~i 75 (101)
-+++|+++||++|+.+.+.+.+ .++.+..++++.... +.+..+...+|++++ +|+.+
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE-------LAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh-------HHHhcCcccccEEEEEECCEEE
Confidence 3678999999999999999977 455555666554322 222357888999765 77744
No 81
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.66 E-value=1e-07 Score=52.37 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE-CCeEeechHHHHhHHH
Q 034205 20 SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI-SGQLVGSTNEVMSLHL 86 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv-~g~~igg~~~~~~~~~ 86 (101)
.||+|+++.-+|..+|++|+...+...+....-...+.+.++..++|++.. +|+.+..+..+.++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 499999999999999999998777442222111124566688999999998 8999999988887654
No 82
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.66 E-value=2.1e-07 Score=54.73 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=43.4
Q ss_pred hHHHhhhcC--C--cEEEEecCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE--E
Q 034205 2 DKVTRLASE--K--GVVIFSKSSCCLCYAVNILFQEL-----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF--I 70 (101)
Q Consensus 2 ~~~~~~~~~--~--~vvif~~~~Cp~C~~~~~~l~~~-----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf--v 70 (101)
+.+.+.++. . -|+.|+.+||+.|+.....|.++ ++.+-.+|+|.++... .+.+..+...+|+++ -
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~----~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTM----ELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHH----HHHHHcCCCcCCEEEEEe
Confidence 345555543 2 25569999999999999988764 2333444444332212 344446889999764 4
Q ss_pred CCeEe
Q 034205 71 SGQLV 75 (101)
Q Consensus 71 ~g~~i 75 (101)
+|+.+
T Consensus 80 ~G~~v 84 (103)
T cd02985 80 DGEKI 84 (103)
T ss_pred CCeEE
Confidence 88754
No 83
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.65 E-value=1.4e-07 Score=62.31 Aligned_cols=66 Identities=21% Similarity=0.386 Sum_probs=45.2
Q ss_pred HhhhcCCcEEEEec---CCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE--CCeE
Q 034205 5 TRLASEKGVVIFSK---SSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI--SGQL 74 (101)
Q Consensus 5 ~~~~~~~~vvif~~---~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv--~g~~ 74 (101)
+++-+...+++|+. +|||+|+.+..++++.. +++..+++|.+.+. .+.+..+..++|++.+ ||+.
T Consensus 15 ~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-----~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 15 KELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-----EEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred HhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-----HHHHHcCCCccCEEEEEeCCee
Confidence 34444556888988 99999999999997763 33446677654432 3444468999999855 6544
Q ss_pred e
Q 034205 75 V 75 (101)
Q Consensus 75 i 75 (101)
+
T Consensus 90 ~ 90 (215)
T TIGR02187 90 G 90 (215)
T ss_pred e
Confidence 3
No 84
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.65 E-value=1.6e-07 Score=56.43 Aligned_cols=46 Identities=13% Similarity=0.298 Sum_probs=38.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC-CcHHHHHHHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKALM 57 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~-~~~~~~~~l~ 57 (101)
.|++|+.+.|+.|++|+.+|++.|++|+++|+-.++ ...++.+.++
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 478999999999999999999999999999997654 4444544444
No 85
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.8e-08 Score=52.87 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=47.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCc-HH---H---HHHHH--hhCCCCCccEEEEC-CeEeechHHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEG-KE---M---EKALM--RMGCNAPVPAVFIS-GQLVGSTNEV 81 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~-~~---~---~~~l~--~~~g~~~vP~vfv~-g~~igg~~~~ 81 (101)
++|++..||.|..++..|++.++.|++++|..+-.. .. + +.++. +..|+-.+|.+.++ |+.|=| +|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl 81 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDL 81 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chh
Confidence 899999999999999999999999999999754221 11 0 01111 12578899999775 555544 444
No 86
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.62 E-value=6.2e-07 Score=49.75 Aligned_cols=63 Identities=8% Similarity=0.159 Sum_probs=51.8
Q ss_pred EEEEecC-------CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 13 VVIFSKS-------SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 13 vvif~~~-------~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+++|..+ .||+|.+++.+|...|++|+.++++.. +.+....+|++..+|+.+.+...+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 4677777 579999999999999999998887642 2356789999999999999998877754
Q ss_pred H
Q 034205 86 L 86 (101)
Q Consensus 86 ~ 86 (101)
.
T Consensus 71 ~ 71 (75)
T cd03080 71 E 71 (75)
T ss_pred H
Confidence 3
No 87
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.62 E-value=2e-07 Score=54.12 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=38.4
Q ss_pred EEEEecCCChhHHHHHHHHHhc----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE--ECCeEeec
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF--ISGQLVGS 77 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf--v~g~~igg 77 (101)
++.|+++||+.|+.+.+.+.+. +-.+....+|.+... .+....+..++|+++ -+|+.++.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-----~l~~~~~v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-----EIAEAAGIMGTPTVQFFKDKELVKE 82 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-----HHHHHCCCeeccEEEEEECCeEEEE
Confidence 5679999999999999988652 222334444443332 233345789999874 47776533
No 88
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.60 E-value=5e-07 Score=49.57 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=55.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
++|..+.|+.|++++-+|...|++|+.+.++...... ..+.+.+....+|++..+|..+.....+....
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~---~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPE---LDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhh---hhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 6888899999999999999999999999887532111 12455678899999999999888887776653
No 89
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.59 E-value=4e-07 Score=51.51 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC-CeEeechHHHHhHHH
Q 034205 19 SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS-GQLVGSTNEVMSLHL 86 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~-g~~igg~~~~~~~~~ 86 (101)
++||+|.+++.+|...|++|+.+.++..... .....+ +.++...+|++..+ |..+.+...+.+..+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~-~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIP-PILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcc-cccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 5899999999999999999999888754322 112233 45678899999988 889999888877654
No 90
>PTZ00051 thioredoxin; Provisional
Probab=98.58 E-value=5.1e-07 Score=52.12 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=44.5
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHHHHHhcC---CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034205 3 KVTRLASEKG--VVIFSKSSCCLCYAVNILFQELG---VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLV 75 (101)
Q Consensus 3 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~~---i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~i 75 (101)
.++++++.++ ++.|+.+||++|+.+...|.+.. .....+.+|.+... .+.+..+..++|++ +-+|+.+
T Consensus 10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS-----EVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH-----HHHHHCCCceeeEEEEEeCCeEE
Confidence 4566666655 45799999999999998886642 12334444443322 23333578899986 4477655
Q ss_pred ech
Q 034205 76 GST 78 (101)
Q Consensus 76 gg~ 78 (101)
+.+
T Consensus 85 ~~~ 87 (98)
T PTZ00051 85 DTL 87 (98)
T ss_pred EEE
Confidence 443
No 91
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.56 E-value=1.1e-06 Score=57.56 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=57.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
.+++|+.+.||+|.+++-+|.++|++|+.+.++...... .+.+.+....+|++..+|..+-....|..+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQ----DLIDLNPYQSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCH----HHHHhCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 488999999999999999999999999999998643222 3455677899999999998888888777654
No 92
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.55 E-value=1.4e-06 Score=48.25 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=55.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+++|+.+.+|+|++++.+|...|++|+.+.++...... ..+.+.+.+....+|++..+|..+.....+....
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQ-LTPEFKKINPFGKVPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCc-CCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 36899999999999999999999999999887543211 1123455677899999999998888877776654
No 93
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.55 E-value=1.9e-06 Score=48.26 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=55.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC---CeEeechHHHHhHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS---GQLVGSTNEVMSLHL 86 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~---g~~igg~~~~~~~~~ 86 (101)
+++|+.+. |+|++++.+|...|++|+.+.++...... ..+.+.+.+....+|++..+ |..+.....+.+...
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQ-KKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcc-cCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 57899886 99999999999999999998887532211 11234456778899999887 788888887777643
No 94
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.55 E-value=1.4e-06 Score=51.00 Aligned_cols=66 Identities=26% Similarity=0.355 Sum_probs=40.7
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHHHHHhc----CCC-cEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCe
Q 034205 3 KVTRLASEKG--VVIFSKSSCCLCYAVNILFQEL----GVH-PMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQ 73 (101)
Q Consensus 3 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~i~-~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~ 73 (101)
.+..+++..+ ++.|+++|||+|+.+...|.+. +-. .....++.+ + .+ +.+..+..++|++ |-+|+
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~----~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-ID----TLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HH----HHHHcCCCcCcEEEEEECCE
Confidence 3455555554 4679999999999998888653 211 233344433 2 12 2344588999975 55787
Q ss_pred E
Q 034205 74 L 74 (101)
Q Consensus 74 ~ 74 (101)
.
T Consensus 83 ~ 83 (102)
T cd02948 83 L 83 (102)
T ss_pred E
Confidence 4
No 95
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.54 E-value=4.8e-07 Score=52.71 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHHHHHhcCCC----cEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeE
Q 034205 3 KVTRLASEKG--VVIFSKSSCCLCYAVNILFQELGVH----PMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQL 74 (101)
Q Consensus 3 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~~i~----~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~ 74 (101)
.+++.+...+ ++.|+++||++|+.+...+.+..-. +....||-+.+. .+.+..+..++|++ |-+|+.
T Consensus 10 ~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 10 DFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR-----MLCRSQGVNSYPSLYVFPSGMN 84 (101)
T ss_pred hHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH-----HHHHHcCCCccCEEEEEcCCCC
Confidence 3455555444 5679999999999999998654322 233334433322 23334578999988 446764
No 96
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.54 E-value=7.3e-07 Score=53.89 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=40.1
Q ss_pred HHHhhhcCC-c--EEEEecCCChhHHHHHHHHH-------hc--CCCcEEEEecCCCCcH------HHHHHHHhhCCCCC
Q 034205 3 KVTRLASEK-G--VVIFSKSSCCLCYAVNILFQ-------EL--GVHPMVYEIDQDPEGK------EMEKALMRMGCNAP 64 (101)
Q Consensus 3 ~~~~~~~~~-~--vvif~~~~Cp~C~~~~~~l~-------~~--~i~~~~~~vd~~~~~~------~~~~~l~~~~g~~~ 64 (101)
.++++.+.+ + ++.|+++|||+|+++...+. .+ ++.+..++++.+.... .-...+....+..+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 455666666 3 56799999999999876552 12 2333344444331100 00124555568899
Q ss_pred ccEE-EECC
Q 034205 65 VPAV-FISG 72 (101)
Q Consensus 65 vP~v-fv~g 72 (101)
+|++ |+++
T Consensus 85 ~Pt~~~~~~ 93 (125)
T cd02951 85 TPTVIFLDP 93 (125)
T ss_pred ccEEEEEcC
Confidence 9985 4553
No 97
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.53 E-value=5e-07 Score=53.30 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=41.5
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHHHHHhcCC----------CcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--
Q 034205 3 KVTRLASEKG--VVIFSKSSCCLCYAVNILFQELGV----------HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV-- 68 (101)
Q Consensus 3 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~~i----------~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v-- 68 (101)
.+++.++..+ ++.|+++||++|+++...+.+..- ......+|.+.+. .+.+..|..++|++
T Consensus 10 ~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Ptl~~ 84 (108)
T cd02996 10 NIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-----DIADRYRINKYPTLKL 84 (108)
T ss_pred hHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-----HHHHhCCCCcCCEEEE
Confidence 3455565554 567999999999999988864311 1333344433332 23444688999987
Q ss_pred EECCe
Q 034205 69 FISGQ 73 (101)
Q Consensus 69 fv~g~ 73 (101)
|-+|+
T Consensus 85 ~~~g~ 89 (108)
T cd02996 85 FRNGM 89 (108)
T ss_pred EeCCc
Confidence 45665
No 98
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.53 E-value=6.5e-07 Score=58.77 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=54.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE-ECCeEeechHHHHhHHHc
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF-ISGQLVGSTNEVMSLHLS 87 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf-v~g~~igg~~~~~~~~~~ 87 (101)
++|+...||+|++++.+|..+|++|+.++++..+... . .+.++..++|++. .||..+.+...+.+...+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~----~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEET----P-IRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchh----H-HHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 3688899999999999999999999988876543221 1 3446778999997 788899999988886543
No 99
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.53 E-value=6.4e-07 Score=61.25 Aligned_cols=68 Identities=19% Similarity=0.427 Sum_probs=56.1
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
++++|.-.+||+|-+++.+|+-++++|..++|+.-. ++++ +.+.+..||.+.+.|+.+-...-++.+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-----r~eI-k~SsykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-----RQEI-KWSSYKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-----hhhc-cccccccccEEEeccceechhHHHHHHH
Confidence 799999999999999999999999999999998542 2243 3467899999999998777777666654
No 100
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.9e-07 Score=63.20 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=44.9
Q ss_pred EEEEecCCChhHHHHHHHHHhc----CCCcE--EEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEeechH
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL----GVHPM--VYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLVGSTN 79 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~----~i~~~--~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~igg~~ 79 (101)
+|.|+.|||+.|+.....|.+. +-.|. .+|+|.++. +....|..++|+| |++|+++-||.
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-------vAaqfgiqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-------VAAQFGVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-------HHHHhCcCcCCeEEEeeCCcCccccC
Confidence 5679999999999999999765 33444 455555443 3334599999987 78999998884
No 101
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.50 E-value=8.1e-07 Score=55.99 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=37.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-------CCcEEEEecCCCCcHHHHHHHHhhCCCCC------ccEE--EECCeEeec
Q 034205 13 VVIFSKSSCCLCYAVNILFQELG-------VHPMVYEIDQDPEGKEMEKALMRMGCNAP------VPAV--FISGQLVGS 77 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~-------i~~~~~~vd~~~~~~~~~~~l~~~~g~~~------vP~v--fv~g~~igg 77 (101)
++.|+++|||.|+.+...+.+.. +.+-.+|++..++ +.+..+..+ +|++ |.+|+.++.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-------la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-------VAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-------HHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 67799999999999998886542 3344455554432 222234444 8976 678887643
No 102
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.50 E-value=9.8e-07 Score=50.77 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=43.7
Q ss_pred HHHhhhcCC--c--EEEEecCCChhHHHHHHHHHhc----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECC
Q 034205 3 KVTRLASEK--G--VVIFSKSSCCLCYAVNILFQEL----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISG 72 (101)
Q Consensus 3 ~~~~~~~~~--~--vvif~~~~Cp~C~~~~~~l~~~----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g 72 (101)
.+.+++... + ++.|+.+||+.|+++...|.+. ...+..+.+|.+... .+.+..+..++|++ |.+|
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-----EISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-----HHHHhcCCccccEEEEEECC
Confidence 344454444 3 5679999999999999988653 233555666554332 23344578899976 5577
Q ss_pred eEe
Q 034205 73 QLV 75 (101)
Q Consensus 73 ~~i 75 (101)
+.+
T Consensus 79 ~~~ 81 (97)
T cd02984 79 TIV 81 (97)
T ss_pred EEE
Confidence 754
No 103
>PRK10387 glutaredoxin 2; Provisional
Probab=98.49 E-value=9.8e-07 Score=57.43 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=55.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE-EECCeEeechHHHHhHHHc
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV-FISGQLVGSTNEVMSLHLS 87 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v-fv~g~~igg~~~~~~~~~~ 87 (101)
+++|+.+.||+|.+++-+|..+|++|+.++++..+... . .+.++..++|++ ..+|..+.....|....++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~----~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT----P-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh----H-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 46899999999999999999999999998886443211 1 234567899999 5688899999888877653
No 104
>PRK09381 trxA thioredoxin; Provisional
Probab=98.49 E-value=8.7e-07 Score=52.24 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=38.7
Q ss_pred EEEEecCCChhHHHHHHHHHhc----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE--CCeEeec
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI--SGQLVGS 77 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv--~g~~igg 77 (101)
++.|+++|||+|+.+...|+++ +-.+....+|.+... .+.+..+..++|++++ +|+.++.
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~G~~~~~ 90 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-----GTAPKYGIRGIPTLLLFKNGEVAAT 90 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-----hHHHhCCCCcCCEEEEEeCCeEEEE
Confidence 5679999999999998888653 222333444433322 2233358899998744 8886643
No 105
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.49 E-value=3.6e-06 Score=48.53 Aligned_cols=69 Identities=25% Similarity=0.356 Sum_probs=45.8
Q ss_pred HHHhhhcC--Cc-EEEEecCCChhHHHHHHHHHhc----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCe
Q 034205 3 KVTRLASE--KG-VVIFSKSSCCLCYAVNILFQEL----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQ 73 (101)
Q Consensus 3 ~~~~~~~~--~~-vvif~~~~Cp~C~~~~~~l~~~----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~ 73 (101)
.+++.+.. .+ |+.|+++||++|+.+++.|.+. +-++....||.+... .+.+..+...+|++ |-+|+
T Consensus 8 ~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~v~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 8 NFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK-----ELCKKYGVKSVPTIIFFKNGK 82 (103)
T ss_dssp THHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH-----HHHHHTTCSSSSEEEEEETTE
T ss_pred HHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc-----hhhhccCCCCCCEEEEEECCc
Confidence 34455544 33 6679999999999999988653 325566666665442 24444689999987 45777
Q ss_pred Eee
Q 034205 74 LVG 76 (101)
Q Consensus 74 ~ig 76 (101)
...
T Consensus 83 ~~~ 85 (103)
T PF00085_consen 83 EVK 85 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 106
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.48 E-value=6e-07 Score=53.76 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=43.1
Q ss_pred cEEEEecCC--ChhHHHHHHHHHhcCCCc----EEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEeech
Q 034205 12 GVVIFSKSS--CCLCYAVNILFQELGVHP----MVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLVGST 78 (101)
Q Consensus 12 ~vvif~~~~--Cp~C~~~~~~l~~~~i~~----~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~igg~ 78 (101)
.|+.|+.+| ||.|+.+..+|.++.-+| ....++.+.+. .+....+..++|++ |-||+.++..
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-----~la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-----ALAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-----HHHHHcCCCcCCEEEEEECCEEEEEE
Confidence 467789986 999999999997664332 33344444432 34455689999987 5699877654
No 107
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.48 E-value=1.4e-06 Score=48.31 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=54.6
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC-CeEeechHHHHhHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS-GQLVGSTNEVMSLH 85 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~-g~~igg~~~~~~~~ 85 (101)
++|+.+.||+|.+++-+|...|++|+.+.++...+.. .+.+.+.+...++|++..+ |..+.....+.++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~--~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENK--TPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccC--CHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence 4789999999999999999999999999988653211 1245566788999999984 87787777666554
No 108
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.47 E-value=4.8e-07 Score=54.00 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=41.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---cEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEeechHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVH---PMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLVGSTNE 80 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~---~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~igg~~~ 80 (101)
++.|+++||+.|+.+...|+++.-. ...+.||.+.. . +.+..+..++|++ |.+|+.++....
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~----l~~~~~i~~~Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--F----LVNYLDIKVLPTLLVYKNGELIDNIVG 94 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--H----HHHhcCCCcCCEEEEEECCEEEEEEec
Confidence 4569999999999999998764322 23344444332 2 3344588999986 669987755443
No 109
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.46 E-value=1.5e-06 Score=52.44 Aligned_cols=67 Identities=19% Similarity=0.381 Sum_probs=41.0
Q ss_pred HHhhhcCCc--EEEEecCCChhHHHHHHHHHh------cCCCcEEEEecCCCCcHHHHHHHHhhCCCC--CccEEE-E--
Q 034205 4 VTRLASEKG--VVIFSKSSCCLCYAVNILFQE------LGVHPMVYEIDQDPEGKEMEKALMRMGCNA--PVPAVF-I-- 70 (101)
Q Consensus 4 ~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~------~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~--~vP~vf-v-- 70 (101)
++.+...++ ++.|+++||++|+.+...+.+ .+..|..++++.+++... +. .+.. .+|+++ +
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~--~~----~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD--EE----FSPDGGYIPRILFLDP 85 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh--hh----cccCCCccceEEEECC
Confidence 444444443 456999999999999888865 234577778876543221 12 2232 499874 4
Q ss_pred CCeEee
Q 034205 71 SGQLVG 76 (101)
Q Consensus 71 ~g~~ig 76 (101)
+|+.++
T Consensus 86 ~Gk~~~ 91 (117)
T cd02959 86 SGDVHP 91 (117)
T ss_pred CCCCch
Confidence 566544
No 110
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.46 E-value=6e-07 Score=46.37 Aligned_cols=56 Identities=25% Similarity=0.466 Sum_probs=39.7
Q ss_pred EEEEecCCChhHHHHHHHHHh-----cCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECC
Q 034205 13 VVIFSKSSCCLCYAVNILFQE-----LGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~-----~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g 72 (101)
+++|..++||+|.++...+.+ .++.+..++++....... . ....+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK---E-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh---H-HHhCCCccccEEEEEe
Confidence 468999999999999999994 456666666665543222 1 1235778999998765
No 111
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.43 E-value=1.3e-06 Score=51.94 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=37.1
Q ss_pred EEEEecCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE--ECCeEe
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL-------GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF--ISGQLV 75 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~-------~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf--v~g~~i 75 (101)
++.|+++|||.|+.+.+.+.++ ++.+-.+|++..+ .+.+..|..++|+++ .+|+.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-------~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-------RLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-------HHHHHcCCccCCEEEEEECCEEE
Confidence 5669999999999888877443 2334444444332 233445889999874 688754
No 112
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.43 E-value=2.7e-06 Score=50.35 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=35.1
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
.-++.|+++|||+|+++...+.+.. ..+....|+.+.+... ...+..+...+|+++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCCCcCCEEE
Confidence 3467799999999999998886542 1234444444432222 122235788999874
No 113
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.43 E-value=1.3e-06 Score=51.51 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=38.3
Q ss_pred cEEEEecCCChhHHHHHHHHHh---c----CCCcEEEEecCCCCc---------------HHHHHHHHhhCCCCCccEEE
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE---L----GVHPMVYEIDQDPEG---------------KEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~---~----~i~~~~~~vd~~~~~---------------~~~~~~l~~~~g~~~vP~vf 69 (101)
.|++|+.+|||+|+++...+.. . .-.+..+-++..... ....+.+.+..|...+|+++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 4788999999999998777653 1 112444444433221 11223566667899999986
Q ss_pred E-C--Ce---EeechHHH
Q 034205 70 I-S--GQ---LVGSTNEV 81 (101)
Q Consensus 70 v-~--g~---~igg~~~~ 81 (101)
+ | |+ .+.|+-.-
T Consensus 88 ~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 88 FLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp ECTTTSCEEEEEESS--H
T ss_pred EEcCCCCEEEEecCCCCH
Confidence 5 4 66 45566443
No 114
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3.8e-07 Score=53.01 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=66.1
Q ss_pred CcEEEEecCCChhH------HHHHHHHHhcCCCcEEEEecCCCCcHH-----HHHHHHhhCCCCCccEEEECCeEeechH
Q 034205 11 KGVVIFSKSSCCLC------YAVNILFQELGVHPMVYEIDQDPEGKE-----MEKALMRMGCNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 11 ~~vvif~~~~Cp~C------~~~~~~l~~~~i~~~~~~vd~~~~~~~-----~~~~l~~~~g~~~vP~vfv~g~~igg~~ 79 (101)
..|.+|+++.-+.- +++..+|+...+.++.+|+...++.+. ++.+.+...|.+.-|+||-++++.|+++
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 35677877655443 366778898899999999987665443 2233344578889999999999999999
Q ss_pred HHHhHHHcCCchhhccc
Q 034205 80 EVMSLHLSGNLIPLLKP 96 (101)
Q Consensus 80 ~~~~~~~~g~L~~~l~~ 96 (101)
.+.+..+++.|.+.|+-
T Consensus 82 ~F~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGL 98 (108)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 99999999999888853
No 115
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.42 E-value=6.1e-07 Score=57.69 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=47.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC---CcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEee---chHHHHh-
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGV---HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLVG---STNEVMS- 83 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i---~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~ig---g~~~~~~- 83 (101)
|+-|+++|||.|+.+.+.|..+.- ....+.|+.+.. . +....+..++|++ |.+|+.++ |+++...
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~----l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~ 160 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--G----ASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE 160 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--h----hHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC
Confidence 445999999999999988866532 234455544432 2 3334588999976 56998764 3333221
Q ss_pred HHHcCCchhhcccCC
Q 034205 84 LHLSGNLIPLLKPYQ 98 (101)
Q Consensus 84 ~~~~g~L~~~l~~~g 98 (101)
-.....|+..|.+.|
T Consensus 161 ~f~~~~le~~L~~~g 175 (175)
T cd02987 161 DFDAEDLESFLVEYG 175 (175)
T ss_pred CCCHHHHHHHHHhcC
Confidence 122334555555443
No 116
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.42 E-value=2.3e-06 Score=49.20 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=39.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE--ECCeEe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELG----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF--ISGQLV 75 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf--v~g~~i 75 (101)
++.|+++||++|+.+...+.+.. -.+....+|.+... .+.+..+..++|+++ -+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-----QIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-----HHHHHcCCCCCCEEEEEeCCEEe
Confidence 56799999999999998886543 23444555554432 244445889999874 577654
No 117
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.41 E-value=1.6e-06 Score=50.59 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=35.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC----CcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECC
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGV----HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISG 72 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i----~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g 72 (101)
++.|+++||++|+.+...+.+..- ......+|-+... .+.+..+..++|++ |.+|
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE-----SLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH-----HHHHHcCCCcccEEEEEcCC
Confidence 566999999999999888865422 2333344433321 23444588999987 4465
No 118
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.41 E-value=1.9e-06 Score=52.10 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=38.3
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCC-cHHHHHHHHh
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPE-GKEMEKALMR 58 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~-~~~~~~~l~~ 58 (101)
.|++|+.|.|..|++|+.+|+++|++|+++|+...+- ..++.+.++.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~ 49 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSK 49 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999987654 4444444433
No 119
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.41 E-value=1.3e-06 Score=51.23 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=35.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---cEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVH---PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~---~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
++.|+++||++|+.+...|+++.-. ...+.||.+.... .+.+..+..++|+++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEE
Confidence 5669999999999999998765322 3344555442222 344446889999874
No 120
>PRK10026 arsenate reductase; Provisional
Probab=98.40 E-value=2.1e-06 Score=53.45 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=39.8
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC-CcHHHHHHHHh
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKALMR 58 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~-~~~~~~~~l~~ 58 (101)
..|+||+.+.|.-|++|+.+|++.|++|+++|+-.++ ...+++..++.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~ 50 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIAD 50 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHh
Confidence 5689999999999999999999999999999997654 44555555543
No 121
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.40 E-value=9.2e-07 Score=53.11 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=36.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC----cEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVH----PMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQ 73 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~----~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~ 73 (101)
++.|+.+||++|+.+...+.+..-. .....||-+.+.. ...+..+..++|++ |.+|+
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~----l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG----KCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH----HHHHhcCCcccCEEEEEECCc
Confidence 5679999999999999998765322 2233444333222 12223577889986 66776
No 122
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.39 E-value=5.1e-06 Score=45.67 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=54.2
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
.+|+.+..|+|.+++.+|.+.|++|+.++++..... ...+.+.+.+....+|++..+|..+.....+..+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 689999999999999999999999999888753221 1112345567889999999999888877766554
No 123
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.1e-06 Score=52.30 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=38.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCc-----EEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeE
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHP-----MVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQL 74 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~-----~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~ 74 (101)
|+-|+++||+.|+.+.+.+.++..+| -.+|+|. .. .+.+..+...+|++ +.+|+.
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~~----~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---LE----EVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---CH----hHHHhcCceEeeEEEEEECCEE
Confidence 34499999999999999998875554 4566665 22 23344588999987 457753
No 124
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.39 E-value=7.2e-06 Score=47.00 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=38.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE--CCeEe
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI--SGQLV 75 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv--~g~~i 75 (101)
-++.|+++||++|+.+...|.+. +-......+|.+.+. .+.+..+..++|++++ +|+.+
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-----DIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHcCCCcCCEEEEEeCCcEe
Confidence 35678999999999998887553 322444444443332 2233358899998765 77654
No 125
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.39 E-value=1.6e-06 Score=50.24 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=41.4
Q ss_pred HHhhhcCCc-EEEEecCCChhHHHHHHHHHhc----CC---CcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE--ECCe
Q 034205 4 VTRLASEKG-VVIFSKSSCCLCYAVNILFQEL----GV---HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF--ISGQ 73 (101)
Q Consensus 4 ~~~~~~~~~-vvif~~~~Cp~C~~~~~~l~~~----~i---~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf--v~g~ 73 (101)
+++.+...+ ++.|+++||++|+.....+.+. .- .+....+|.+.+. .+.+..+..++|+++ -+|+
T Consensus 10 f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 10 FDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----ELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred HHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----hhHhhcCCCcCCEEEEEeCCC
Confidence 445554444 4669999999999988877543 21 3445555544332 233335788999864 4665
Q ss_pred Ee
Q 034205 74 LV 75 (101)
Q Consensus 74 ~i 75 (101)
.+
T Consensus 85 ~~ 86 (102)
T cd03005 85 KV 86 (102)
T ss_pred ee
Confidence 43
No 126
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.38 E-value=3.1e-06 Score=49.64 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=34.7
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC------CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELG------VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~------i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
-++.|+++||++|+++...+.+.. +.+-.+|++.++.. .+.+..+..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~-----~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK-----PLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccH-----HHHHHcCCCcCCEEEE
Confidence 367799999999999988876542 22333444432222 2334458899998754
No 127
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.38 E-value=2.4e-06 Score=50.09 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHHhhhcCCc-EEEEecCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 3 KVTRLASEKG-VVIFSKSSCCLCYAVNILFQEL-------GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 3 ~~~~~~~~~~-vvif~~~~Cp~C~~~~~~l~~~-------~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
.+.++.+... ++.|+++|||+|++....|.++ +..+....++.+... .+.+..+..++|+++
T Consensus 8 ~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 8 SFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-----SIASEFGVRGYPTIK 77 (104)
T ss_pred hhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-----hHHhhcCCccccEEE
Confidence 3445444334 4569999999999888887543 222333333332221 233446889999873
No 128
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.37 E-value=9.7e-07 Score=53.52 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=34.8
Q ss_pred EEEEec-------CCChhHHHHHHHHHhc----C--CCcEEEEecCCCCcHHHHHHHHhhCCCC-CccEEEE
Q 034205 13 VVIFSK-------SSCCLCYAVNILFQEL----G--VHPMVYEIDQDPEGKEMEKALMRMGCNA-PVPAVFI 70 (101)
Q Consensus 13 vvif~~-------~~Cp~C~~~~~~l~~~----~--i~~~~~~vd~~~~~~~~~~~l~~~~g~~-~vP~vfv 70 (101)
++.|++ +|||+|+.+...+++. . +.+-.+|++..+.-......+....+.. ++|++++
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 566888 8999999998877543 2 4455566654331000001333445666 8998754
No 129
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.37 E-value=7.7e-06 Score=49.90 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=43.8
Q ss_pred HHHhhhcCCc-E-EEEecCCChhHHHHHH-HHH------hcCCCcEEEEecCCCCc--HH-HHHHHHhhCCCCCccEEEE
Q 034205 3 KVTRLASEKG-V-VIFSKSSCCLCYAVNI-LFQ------ELGVHPMVYEIDQDPEG--KE-MEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 3 ~~~~~~~~~~-v-vif~~~~Cp~C~~~~~-~l~------~~~i~~~~~~vd~~~~~--~~-~~~~l~~~~g~~~vP~vfv 70 (101)
.++++.+.++ | +.|+++||++|+.+.. .+. .++-.|..+.+|.+... .. ..+......|...+|++.+
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4555655554 4 4488999999999865 332 23445666666654332 21 1222223457788998754
Q ss_pred ---CCeEeec
Q 034205 71 ---SGQLVGS 77 (101)
Q Consensus 71 ---~g~~igg 77 (101)
+|+.+.+
T Consensus 87 l~~~G~~~~~ 96 (124)
T cd02955 87 LTPDLKPFFG 96 (124)
T ss_pred ECCCCCEEee
Confidence 5777633
No 130
>PRK10996 thioredoxin 2; Provisional
Probab=98.37 E-value=7.2e-06 Score=50.76 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=44.2
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHHHHHhc----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE--ECCeE
Q 034205 3 KVTRLASEKG--VVIFSKSSCCLCYAVNILFQEL----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF--ISGQL 74 (101)
Q Consensus 3 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf--v~g~~ 74 (101)
.++++++..+ ++.|+++||++|+.+...|.+. +-.+..+.+|.+... .+.+..+..++|+++ -+|+.
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-----~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-----ELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-----HHHHhcCCCccCEEEEEECCEE
Confidence 4555665443 5679999999999988888653 323455555544332 234445889999874 48875
Q ss_pred e
Q 034205 75 V 75 (101)
Q Consensus 75 i 75 (101)
+
T Consensus 119 v 119 (139)
T PRK10996 119 V 119 (139)
T ss_pred E
Confidence 5
No 131
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.37 E-value=2.1e-06 Score=51.57 Aligned_cols=46 Identities=22% Similarity=0.456 Sum_probs=37.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC-CcHHHHHHHHh
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKALMR 58 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~-~~~~~~~~l~~ 58 (101)
|++|+.+.|+-|++|+.+|++.+++|+++|+...+ ...++.+.++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~ 47 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAK 47 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHH
Confidence 57999999999999999999999999999997664 44445444443
No 132
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.35 E-value=3.9e-06 Score=52.16 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHhhhcCCc--EEEEecCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE-E--CC
Q 034205 4 VTRLASEKG--VVIFSKSSCCLCYAVNILFQEL----G--VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF-I--SG 72 (101)
Q Consensus 4 ~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~--i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf-v--~g 72 (101)
+++.+...+ |+.|+.+||++|+.+...|.++ + +.+..++++.... . .+.+..+...+|+++ + +|
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-~----~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-L----PEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-H----HHHHHcCCCCCCEEEEECCCC
Confidence 344544443 5569999999999999888654 2 3344455553321 1 223345889999874 4 47
Q ss_pred eEe
Q 034205 73 QLV 75 (101)
Q Consensus 73 ~~i 75 (101)
+.+
T Consensus 88 ~~v 90 (142)
T cd02950 88 NEE 90 (142)
T ss_pred CEE
Confidence 644
No 133
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.35 E-value=2.2e-06 Score=51.33 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=36.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC-CcHHHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKALM 57 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~-~~~~~~~~l~ 57 (101)
|++|+.+.|+.|++|+.+|++.+++|+++|+-..+ ...++.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~ 46 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLA 46 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHH
Confidence 57999999999999999999999999999987654 3444444443
No 134
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.32 E-value=7.2e-06 Score=45.43 Aligned_cols=70 Identities=14% Similarity=0.315 Sum_probs=52.5
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC-CeEeechHHHHhHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS-GQLVGSTNEVMSLH 85 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~-g~~igg~~~~~~~~ 85 (101)
.+|+.+.| .|.+++.+|.+.|++|+.+.++..... ...+.+.+.++...+|++..+ |..+.....+.+..
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKT-QKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCc-cCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence 57888876 488899999999999999888864321 111245566788999999887 78888887776654
No 135
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.32 E-value=3.9e-06 Score=48.64 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHhhhcCCc--EEEEecCCChhHHHHHHHHHhc----C--CCcEEEEecCCCC-cHHHHHHHHhhCCCCCccEE--EECC
Q 034205 4 VTRLASEKG--VVIFSKSSCCLCYAVNILFQEL----G--VHPMVYEIDQDPE-GKEMEKALMRMGCNAPVPAV--FISG 72 (101)
Q Consensus 4 ~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~--i~~~~~~vd~~~~-~~~~~~~l~~~~g~~~vP~v--fv~g 72 (101)
++++++..+ ++.|+++|||+|+.+...+.+. . -.+....+|.+.+ .. .+.+..|..++|++ |-+|
T Consensus 10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~Pt~~~~~~g 85 (104)
T cd02997 10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD----ALKEEYNVKGFPTFKYFENG 85 (104)
T ss_pred HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH----HHHHhCCCccccEEEEEeCC
Confidence 344444443 6779999999999998776443 1 2233444444332 22 23344578899987 4466
Q ss_pred eEe
Q 034205 73 QLV 75 (101)
Q Consensus 73 ~~i 75 (101)
+.+
T Consensus 86 ~~~ 88 (104)
T cd02997 86 KFV 88 (104)
T ss_pred Cee
Confidence 644
No 136
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.32 E-value=1.2e-05 Score=54.05 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 19 SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+.||+|++++.+|..+|++|+.+.+|...... .+.+.+....+|++..+|..+.....|.++..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~----~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPE----DLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCH----HHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 47999999999999999999999998764333 34566778899999999999999998888765
No 137
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=9.9e-06 Score=54.13 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=61.1
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHc
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLS 87 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~ 87 (101)
..|.+|+.-.|||.++++-.|+..||+|+++++|-..-.. + .++...-...+|++.-||+.|+-+-.+.++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~-~--ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSE-W--LLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCH-H--HHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 5699999999999999999999999999999998754332 2 344433578999999999999988888887664
No 138
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.28 E-value=9.9e-06 Score=46.09 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=41.1
Q ss_pred HHHhhhcCC--cEEEEecCCChhHHHHHHHHHh----c--CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 3 KVTRLASEK--GVVIFSKSSCCLCYAVNILFQE----L--GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 3 ~~~~~~~~~--~vvif~~~~Cp~C~~~~~~l~~----~--~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
.+.+++... -+++|+++||++|+.+...+.+ . +-.+....++.+.+. .+.+..+...+|++++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN-----DLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH-----HHHHhCCCCCCCEEEE
Confidence 345555555 4678999999999999888855 3 233455555544322 3444468899998743
No 139
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.27 E-value=7.1e-06 Score=54.95 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=44.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhc---CCCcEEEEecC---CCCc-H---------------------------------H
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL---GVHPMVYEIDQ---DPEG-K---------------------------------E 51 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~---~i~~~~~~vd~---~~~~-~---------------------------------~ 51 (101)
.|++|+.+.||||+++...+.++ ++.+.++.+.. ++.. + +
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~ 189 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIA 189 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHH
Confidence 48899999999999999888775 34443332221 1100 0 0
Q ss_pred HHHHHHhhCCCCCccEEEE-CCeEeechHH
Q 034205 52 MEKALMRMGCNAPVPAVFI-SGQLVGSTNE 80 (101)
Q Consensus 52 ~~~~l~~~~g~~~vP~vfv-~g~~igg~~~ 80 (101)
-...+.+..|...+|++++ ||+.+.|+..
T Consensus 190 ~~~~la~~lgi~gTPtiv~~~G~~~~G~~~ 219 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIVLSNGTLVPGYQG 219 (232)
T ss_pred HhHHHHHHcCCccccEEEEcCCeEeeCCCC
Confidence 1112223357789999988 9999999743
No 140
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.26 E-value=6.1e-06 Score=50.49 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=36.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC-CcHHHHHHHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKALM 57 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~-~~~~~~~~l~ 57 (101)
.+++|+.+.|.-|++|+.+|++.|++|+++|+-.++ ...++++.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 478999999999999999999999999999986543 3444444443
No 141
>PRK15113 glutathione S-transferase; Provisional
Probab=98.26 E-value=1.3e-05 Score=52.55 Aligned_cols=75 Identities=11% Similarity=0.165 Sum_probs=57.8
Q ss_pred CCcEEEEecC--CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 10 EKGVVIFSKS--SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 10 ~~~vvif~~~--~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
.+.+++|+.+ .||+|++++-+|.+.|++|+.+.++..... ...+.+.+.+....||++..+|..+-....+..+.
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 3567899975 699999999999999999999988864321 11124456678899999999998888777776654
No 142
>PRK10853 putative reductase; Provisional
Probab=98.25 E-value=5.3e-06 Score=50.22 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=38.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC-CcHHHHHHHHh
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKALMR 58 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~-~~~~~~~~l~~ 58 (101)
+++|+.+.|..|++|+.+|++.|++|+++|+-.++ ...++.+.+.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 78999999999999999999999999999997654 44445555443
No 143
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.22 E-value=2.7e-06 Score=49.01 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHhhhcCCc--EEEEecCCChhHHHHHHHHHhcC----C--CcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 4 VTRLASEKG--VVIFSKSSCCLCYAVNILFQELG----V--HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 4 ~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~~----i--~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+++.+...+ ++.|+++||+.|+.....+.+.. - .+....+|.+.+. .+.+..+...+|++++
T Consensus 6 ~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 6 FDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-----DLASRFGVSGFPTIKF 75 (102)
T ss_pred HHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-----HHHHhCCCCcCCEEEE
Confidence 444444443 67899999999999877775432 1 2344444443322 3334468899998843
No 144
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.22 E-value=6.7e-06 Score=47.60 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=35.7
Q ss_pred EEEEecCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL----G--VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~----~--i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
++.|+++|||+|++....+.+. . -.+....+|.+.... .+.+..+..++|++++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCCCCCcCEEEE
Confidence 6789999999999988887543 2 235566666554212 2333357889998754
No 145
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.21 E-value=2e-06 Score=56.09 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=37.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---cEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEee
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVH---PMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLVG 76 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~---~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~ig 76 (101)
|+-|+.+||+.|+.+...|.++... ..++.|+.+.. ....+...+|++ |.||+.++
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~--------~~~~~i~~lPTlliyk~G~~v~ 166 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC--------IPNYPDKNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh--------HhhCCCCCCCEEEEEECCEEEE
Confidence 4459999999999999998766432 24444443321 123578899987 56888553
No 146
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.20 E-value=8.2e-06 Score=50.89 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=34.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC------CcEEEEecCCCCcHHHHHHHHhhCCCCCc-cEE-E-ECCe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGV------HPMVYEIDQDPEGKEMEKALMRMGCNAPV-PAV-F-ISGQ 73 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i------~~~~~~vd~~~~~~~~~~~l~~~~g~~~v-P~v-f-v~g~ 73 (101)
|+-|+++|||.|+.+..+|.+..- .+-.+|||..++ +....+..+. |++ | -+|+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-------la~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-------FNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-------HHHHcCccCCCcEEEEEECCe
Confidence 345999999999999999977642 234566665543 3333566644 555 3 3665
No 147
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.20 E-value=6.6e-06 Score=47.63 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=33.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQELG----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
++.|+++||++|+.....+.+.. -.+....+|.+... .+.+..+..++|+++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~i~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-----SLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-----HHHHHCCCCccCEEE
Confidence 66799999999999988876532 22344444443322 233345889999873
No 148
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.19 E-value=8e-06 Score=55.91 Aligned_cols=67 Identities=25% Similarity=0.409 Sum_probs=42.7
Q ss_pred HHhhhcCCcEEEEecCCChhHHHHHHHHHh----cCCCcEEEEecCCCCcH----HHHHHHHhhCCCCCccEEEE
Q 034205 4 VTRLASEKGVVIFSKSSCCLCYAVNILFQE----LGVHPMVYEIDQDPEGK----EMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 4 ~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~----~~i~~~~~~vd~~~~~~----~~~~~l~~~~g~~~vP~vfv 70 (101)
++.+.....++.|+++|||+|+.....|.+ +++.+..+++|...... .....+.+..|..++|++|+
T Consensus 161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 445555556788999999999999888854 45555566666532100 00012334468899999854
No 149
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.19 E-value=3.5e-05 Score=42.30 Aligned_cols=71 Identities=11% Similarity=0.211 Sum_probs=53.4
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
.+|+.+. +.|.+++.+|...|++|+.+.++...... ....+.+.+....+|++..+|..+.....+.....
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQ-APPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCcc-CCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5777775 67999999999999999998887532111 01234456778899999999999998888877653
No 150
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.18 E-value=2.5e-05 Score=43.09 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=51.0
Q ss_pred cCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhH
Q 034205 18 KSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 18 ~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
...||+|++++-+|...|++|+.+.++..... ....+.+.+....+|++..+|..+.....+..+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~--~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPD--TRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCcc--ccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 45799999999999999999999888754321 112455667889999999999888888776654
No 151
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.17 E-value=1.2e-05 Score=48.77 Aligned_cols=67 Identities=6% Similarity=0.064 Sum_probs=40.0
Q ss_pred HHHhhhcCC--cEEE-EecCCChh--HH--HHHHH--------HHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccE
Q 034205 3 KVTRLASEK--GVVI-FSKSSCCL--CY--AVNIL--------FQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPA 67 (101)
Q Consensus 3 ~~~~~~~~~--~vvi-f~~~~Cp~--C~--~~~~~--------l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~ 67 (101)
.+.+.+..+ .+++ |..+||+. |+ ...+. |...++.+-.+|+|.++ .|++..|..++|+
T Consensus 18 nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~-------~La~~~~I~~iPT 90 (120)
T cd03065 18 NYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA-------KVAKKLGLDEEDS 90 (120)
T ss_pred hHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH-------HHHHHcCCccccE
Confidence 344444444 3444 56667765 98 33322 33345666666666553 3444568999998
Q ss_pred E--EECCeEee
Q 034205 68 V--FISGQLVG 76 (101)
Q Consensus 68 v--fv~g~~ig 76 (101)
+ |.||+.+.
T Consensus 91 l~lfk~G~~v~ 101 (120)
T cd03065 91 IYVFKDDEVIE 101 (120)
T ss_pred EEEEECCEEEE
Confidence 7 77998664
No 152
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.15 E-value=1.7e-06 Score=53.13 Aligned_cols=64 Identities=13% Similarity=0.305 Sum_probs=34.3
Q ss_pred HHHhhhcCCcEEEEecCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 3 KVTRLASEKGVVIFSKSSCCLCYAVNILFQEL-----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 3 ~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+++.+-+...+++++.+|||+|.+...+|.+. +++..++..|.+++ .+.+++. .|.+++|++++
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~e--l~~~~lt--~g~~~IP~~I~ 103 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKE--LMDQYLT--NGGRSIPTFIF 103 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHH--HTTTTTT---SS--SSEEEE
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChh--HHHHHHh--CCCeecCEEEE
Confidence 34444455579999999999999998888654 45555555543332 1222222 57899999855
No 153
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.14 E-value=1.5e-05 Score=47.65 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=37.5
Q ss_pred HHhhhcCC---cEEEEecCCChhHHHHHHHHHhcCCC-------cEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 4 VTRLASEK---GVVIFSKSSCCLCYAVNILFQELGVH-------PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 4 ~~~~~~~~---~vvif~~~~Cp~C~~~~~~l~~~~i~-------~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+++.+..+ -++.|+++|||+|+.....+.+..-. .....+|.+.+.. ..+.+..+...+|++++
T Consensus 11 f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 11 FNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN---VALCRDFGVTGYPTLRY 84 (114)
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh---HHHHHhCCCCCCCEEEE
Confidence 44554443 35669999999999998887654221 2333444221111 12334457889998754
No 154
>PTZ00062 glutaredoxin; Provisional
Probab=98.13 E-value=1.1e-05 Score=53.09 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=44.5
Q ss_pred hHHHhhhcC--C-cEEEEecCCChhHHHHHHHHHhcCC---CcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCe
Q 034205 2 DKVTRLASE--K-GVVIFSKSSCCLCYAVNILFQELGV---HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQ 73 (101)
Q Consensus 2 ~~~~~~~~~--~-~vvif~~~~Cp~C~~~~~~l~~~~i---~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~ 73 (101)
+.+.+++++ . .|+.|+++|||.|+.+..+|.++.- .+..+.|+.+ .+...+|++ |-||+
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECCE
Confidence 455666663 3 4566779999999999999977643 3456666643 467889975 45888
Q ss_pred Eeech
Q 034205 74 LVGST 78 (101)
Q Consensus 74 ~igg~ 78 (101)
.++.+
T Consensus 74 ~i~r~ 78 (204)
T PTZ00062 74 LINSL 78 (204)
T ss_pred EEeee
Confidence 76544
No 155
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.12 E-value=1.6e-05 Score=52.74 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=47.9
Q ss_pred HHHhhhcCCcEEEEecCCChhHHHHHHHHH----hcCCCcEEEEecCCCC--cHH--HHHHHHhhCCCCCccEEEE
Q 034205 3 KVTRLASEKGVVIFSKSSCCLCYAVNILFQ----ELGVHPMVYEIDQDPE--GKE--MEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 3 ~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~----~~~i~~~~~~vd~~~~--~~~--~~~~l~~~~g~~~vP~vfv 70 (101)
.++++.....+++|++++||+|+....+|. ++|++...+++|.... ... ....+.+..|...+|.+|+
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 567777788899999999999999888874 5688888888874311 000 0112333458899999976
No 156
>PLN02473 glutathione S-transferase
Probab=98.11 E-value=3.4e-05 Score=50.43 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=55.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+.+|+.+.+|+|++++-+|.++|++|+.+.++.......-.+.+ ..+....+|++..+|..+....-+....
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHL-LRQPFGQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHH-hhCCCCCCCeEEECCEEEEehHHHHHHH
Confidence 57899999999999999999999999998887542111111233 4567889999999999898888777754
No 157
>PLN02378 glutathione S-transferase DHAR1
Probab=98.09 E-value=3.5e-05 Score=50.67 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 19 SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
..||+|+++.-+|.+.|++|+.+.|+...... .+.+.+....+|++..+|..+.....+.....
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQ----WFLDISPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCH----HHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 46999999999999999999998888654332 34456788999999999988888877777654
No 158
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=98.03 E-value=2.2e-05 Score=51.08 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=55.0
Q ss_pred EEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 15 IFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+|+.+.||+|++++-+|.++|++|+.+.++.........+.+.+.+....+|++..+|..+.....+.....
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence 688889999999999999999999998887421101111245566788999999999998888888777543
No 159
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.02 E-value=3.3e-05 Score=50.00 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=37.9
Q ss_pred cEEEEecCCChhHHHHHHHH----HhcCCCcEEEEecCCC-----CcH-HHHHHHHhhCCC--CCccEEEE---CCe
Q 034205 12 GVVIFSKSSCCLCYAVNILF----QELGVHPMVYEIDQDP-----EGK-EMEKALMRMGCN--APVPAVFI---SGQ 73 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l----~~~~i~~~~~~vd~~~-----~~~-~~~~~l~~~~g~--~~vP~vfv---~g~ 73 (101)
++++|+.+|||+|++....| +++++.+.-+.+|... ... .-...+....|. ..+|+.|+ +|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 48899999999999885555 4557666666666442 000 001123333453 68998764 564
No 160
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.02 E-value=1.4e-05 Score=53.32 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=38.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL----GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLV 75 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~----~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~i 75 (101)
-++.|+++|||+|+++.+.+++. +-......+|.+.+. .+.+..+..++|++ |.+|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-----~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-----NLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-----HHHHHcCCCcCCEEEEEECCEEE
Confidence 46789999999999999988654 212333444433322 34444688999986 4578765
No 161
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=98.01 E-value=6e-05 Score=51.43 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=51.7
Q ss_pred cCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 18 KSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 18 ~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
..+||+|++++-+|.++|++|+.+.++...... .+.+.+....+|++..+|..+.....+.++..
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~----~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPE----WFLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCH----HHHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 346999999999999999999998887654333 33455778899999999988888877777653
No 162
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.94 E-value=3.9e-05 Score=43.14 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=34.5
Q ss_pred EEEEecCCChhHHHHHHHHH------h-cCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQ------E-LGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~------~-~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
++.|+++||++|+.+.+.+- + +.-.|..+.+|.+...... .+.. ..+|++++
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 56799999999999987762 2 3455778888775544432 2222 33998865
No 163
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.94 E-value=6e-05 Score=47.54 Aligned_cols=38 Identities=18% Similarity=0.515 Sum_probs=28.3
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHh----cCCCcEEEEecCC
Q 034205 9 SEKGVVIFSKSSCCLCYAVNILFQE----LGVHPMVYEIDQD 46 (101)
Q Consensus 9 ~~~~vvif~~~~Cp~C~~~~~~l~~----~~i~~~~~~vd~~ 46 (101)
+...++.|..+|||+|++....|.+ +++.+..+++|..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 4456889999999999999888864 4555556666643
No 164
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.93 E-value=9.3e-05 Score=48.13 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=20.4
Q ss_pred CcEEEEecCCChhHHHHHHHHHh
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
..|++|+.+.||||+++...+.+
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhh
Confidence 45889999999999999999874
No 165
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.91 E-value=0.00015 Score=45.39 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=17.8
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 034205 13 VVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~ 33 (101)
++-|+++|||.|++....|.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 455999999999999988865
No 166
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.91 E-value=5.4e-05 Score=43.70 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=32.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcC------CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQELG------VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~------i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
++.|+++||++|+.+...+.+.. ..+....+|.+.. ++ ....+..++|++++
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~----~~~~~~~~~Pt~~~ 79 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DV----PSEFVVDGFPTILF 79 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hh----hhhccCCCCCEEEE
Confidence 56799999999999988886542 1234444444332 11 12235588998753
No 167
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.87 E-value=8.2e-05 Score=50.60 Aligned_cols=69 Identities=12% Similarity=0.225 Sum_probs=49.2
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHH----HhcCCCcEEEEecCCCCc--HH--HHHHHHhhCCCCCccEEEE
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILF----QELGVHPMVYEIDQDPEG--KE--MEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l----~~~~i~~~~~~vd~~~~~--~~--~~~~l~~~~g~~~vP~vfv 70 (101)
+.++++.+...+++|.++.||+|++...++ +++|++...+.+|..... .. ....+.+.-|...+|.+|+
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 356777788899999999999999988887 567888888888865211 00 0112233347889999875
No 168
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.86 E-value=0.00018 Score=43.56 Aligned_cols=64 Identities=25% Similarity=0.297 Sum_probs=37.3
Q ss_pred cEEEEecCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCcHHH-------------------HHHHHhhCCCCCc
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL-------GVHPMVYEIDQDPEGKEM-------------------EKALMRMGCNAPV 65 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~-------~i~~~~~~vd~~~~~~~~-------------------~~~l~~~~g~~~v 65 (101)
-++.|+.+|||.|++....|.+. +-.+..+-|+.+.+..++ ...+.+..|...+
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGI 100 (131)
T ss_pred EEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCC
Confidence 35568899999999887776532 113334433333332221 2244555688889
Q ss_pred cEEEE---CCeEe
Q 034205 66 PAVFI---SGQLV 75 (101)
Q Consensus 66 P~vfv---~g~~i 75 (101)
|++++ +|+.+
T Consensus 101 P~~~lid~~G~i~ 113 (131)
T cd03009 101 PTLIILDADGEVV 113 (131)
T ss_pred CEEEEECCCCCEE
Confidence 98764 45543
No 169
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.5e-05 Score=49.20 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=53.4
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE-CCeEeechHHHHhHHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI-SGQLVGSTNEVMSLHL 86 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv-~g~~igg~~~~~~~~~ 86 (101)
.+|....||||.+++.++--+|++++..-++.+++....+ . -|...||.+.- +|+..+-.-|+.....
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~r-m----iG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIR-M----IGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhh-h----hcccccceEEccccccchhhhHHHHHHH
Confidence 3678889999999999999999999887777665543321 2 48999999874 7889988878777654
No 170
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.81 E-value=0.00015 Score=44.11 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=16.7
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 034205 13 VVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~ 33 (101)
++.|..+|||.|+.....|.+
T Consensus 21 ll~F~atwC~~C~~~~p~l~~ 41 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVE 41 (132)
T ss_pred EEEEECCCCchHHHHHHHHHH
Confidence 456889999999988777643
No 171
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.78 E-value=0.00012 Score=49.54 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=47.9
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHHH----hcCCCcEEEEecCCCCcH--H--HHHHHHhhCCCCCccEEEE
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQ----ELGVHPMVYEIDQDPEGK--E--MEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~----~~~i~~~~~~vd~~~~~~--~--~~~~l~~~~g~~~vP~vfv 70 (101)
+.++++.+...+++|.++.||+|++...+|+ ++|++..-+.+|...... . ......+..|...+|.+|+
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 3567788889999999999999999888874 568887778887522110 0 0011222347789999875
No 172
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00014 Score=47.49 Aligned_cols=72 Identities=11% Similarity=0.218 Sum_probs=56.4
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCe-EeechHHHHhHHHc
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQ-LVGSTNEVMSLHLS 87 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~-~igg~~~~~~~~~~ 87 (101)
++|+.+.+|+|.+++-.+.++|++|+.+.|+... ....+.+...+....||++..+|- .+-....|.++.++
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~ 74 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAE 74 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHh
Confidence 5788888899999999999999999999998875 111224556678899999998875 67777777666543
No 173
>PRK10357 putative glutathione S-transferase; Provisional
Probab=97.78 E-value=0.00019 Score=46.41 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=52.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE-CCeEeechHHHHhHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI-SGQLVGSTNEVMSLH 85 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv-~g~~igg~~~~~~~~ 85 (101)
.+|+.+.||++++++-+|...|++|+.+.++...... .+.+.+....+|++.. +|..+-....|....
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~----~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL 70 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADN----GVAQYNPLGKVPALVTEEGECWFDSPIIAEYI 70 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCch----hhhhcCCccCCCeEEeCCCCeeecHHHHHHHH
Confidence 6899999999999999999999999998887543322 2334577889999984 677777776666543
No 174
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.76 E-value=6.6e-05 Score=44.65 Aligned_cols=44 Identities=16% Similarity=0.454 Sum_probs=30.4
Q ss_pred EecCCChhHHHHHHHHHhcCCCcEEEEecCCC-CcHHHHHHHHhh
Q 034205 16 FSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKALMRM 59 (101)
Q Consensus 16 f~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~-~~~~~~~~l~~~ 59 (101)
|+.+.|.-|++|+.+|++.|++|+++|+...+ ...++.+.+...
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~ 45 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKL 45 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHh
Confidence 78999999999999999999999999998754 344444444443
No 175
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.75 E-value=0.00022 Score=42.96 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=22.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCC--cEEEEec
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVH--PMVYEID 44 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~--~~~~~vd 44 (101)
-|+.|..+|||.|.+....|.++.-. +..+.|+
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~ 62 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGIN 62 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 36679999999999988888655322 3444444
No 176
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.75 E-value=0.00035 Score=39.04 Aligned_cols=69 Identities=19% Similarity=0.138 Sum_probs=50.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHh--hCCCCCccEEEECCeEeechHHHHhHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMR--MGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~--~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
.++|+.+..+.|.+++-+|.+.|++|+.+.++..++ .. .+.. ......+|++..||..+.....+..+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~---~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAED---LE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHH---HH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 468888888999999999999999999988875321 11 1111 112568999999998888777666553
No 177
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.74 E-value=9.7e-05 Score=54.04 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=36.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-------CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELG-------VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQ 73 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~-------i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~ 73 (101)
++.|+.+|||+|+.+...|.++. +.+-.+|+|.+.. + ...+..+..++|++ |.+|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---FAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---HHHHHcCCCccceEEEEECCC
Confidence 56799999999999999886542 3344556554422 1 12223478889987 45663
No 178
>PLN02309 5'-adenylylsulfate reductase
Probab=97.73 E-value=0.00024 Score=52.00 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=36.1
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE--ECCe
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF--ISGQ 73 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf--v~g~ 73 (101)
-++.|+.+|||+|+.+...+.++. ..+....+|.+.+..+ ...+..+..++|+++ .+|.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCceeeEEEEEeCCC
Confidence 367899999999999998886552 1233444444312222 122234788999874 4553
No 179
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.73 E-value=0.00017 Score=40.60 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=39.0
Q ss_pred EEEEecCCChhHHHHHHHHHhc------CCCcEEEEecCCCCc--------------------HHHHHH-----HHhhCC
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL------GVHPMVYEIDQDPEG--------------------KEMEKA-----LMRMGC 61 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~------~i~~~~~~vd~~~~~--------------------~~~~~~-----l~~~~g 61 (101)
|.+|+.+.||+|..+.+.+.+. ++.+..+.+...... .++.+. +....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999998775 344555554433321 111111 122357
Q ss_pred CCCccEEEECC
Q 034205 62 NAPVPAVFISG 72 (101)
Q Consensus 62 ~~~vP~vfv~g 72 (101)
...+|+++++|
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 78999999999
No 180
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.71 E-value=0.00027 Score=45.60 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=22.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC-CcEEEEecC
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGV-HPMVYEIDQ 45 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i-~~~~~~vd~ 45 (101)
++.|..+|||+|++....|.++.- .++.+-|+.
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~ 105 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNY 105 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 556999999999998888765521 234444443
No 181
>PTZ00102 disulphide isomerase; Provisional
Probab=97.69 E-value=0.00025 Score=51.43 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=40.5
Q ss_pred HHhhhcCCc--EEEEecCCChhHHHHHHHHHh-------cCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECC
Q 034205 4 VTRLASEKG--VVIFSKSSCCLCYAVNILFQE-------LGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISG 72 (101)
Q Consensus 4 ~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~-------~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g 72 (101)
+.++++.++ ++.|+++|||+|+++...+.+ .+-++....||-..+. .+.+..+..++|++ |-+|
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g 116 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-----ELAQEFGVRGYPTIKFFNKG 116 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-----HHHHhcCCCcccEEEEEECC
Confidence 445555443 677999999999988776543 2233445555544332 23444578899987 3455
Q ss_pred eE
Q 034205 73 QL 74 (101)
Q Consensus 73 ~~ 74 (101)
..
T Consensus 117 ~~ 118 (477)
T PTZ00102 117 NP 118 (477)
T ss_pred ce
Confidence 53
No 182
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.68 E-value=0.0011 Score=40.08 Aligned_cols=69 Identities=12% Similarity=-0.012 Sum_probs=45.9
Q ss_pred HHHhhhcCCc--EEEEec--CCCh---hHHHHHHHHHhcC--CCcEEEEecCCCCcHHHHHHHHhhCCCC--CccEE--E
Q 034205 3 KVTRLASEKG--VVIFSK--SSCC---LCYAVNILFQELG--VHPMVYEIDQDPEGKEMEKALMRMGCNA--PVPAV--F 69 (101)
Q Consensus 3 ~~~~~~~~~~--vvif~~--~~Cp---~C~~~~~~l~~~~--i~~~~~~vd~~~~~~~~~~~l~~~~g~~--~vP~v--f 69 (101)
.+.+.++.++ +|.|.. |||. +|.+...-+.+.. +.+-.+|++...+..+ +.|.+..|.. .+|+| |
T Consensus 10 nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~--~~L~~~y~I~~~gyPTl~lF 87 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN--MELGERYKLDKESYPVIYLF 87 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh--HHHHHHhCCCcCCCCEEEEE
Confidence 4556666666 466999 8999 8988887775543 4455666654333222 2566667888 99987 6
Q ss_pred ECCe
Q 034205 70 ISGQ 73 (101)
Q Consensus 70 v~g~ 73 (101)
.+|.
T Consensus 88 ~~g~ 91 (116)
T cd03007 88 HGGD 91 (116)
T ss_pred eCCC
Confidence 7774
No 183
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.00045 Score=45.56 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=53.2
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 20 SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
.||+|+++...|...+++|....||...... .+...++...+|.+-.||+.+-..+.+.+..+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~----~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE----WFLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcH----HHHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 6999999999999999999888888766555 45566888999999999999999988877544
No 184
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.68 E-value=0.00028 Score=50.69 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=42.8
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHHHHHh-------cCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EEC
Q 034205 3 KVTRLASEKG--VVIFSKSSCCLCYAVNILFQE-------LGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FIS 71 (101)
Q Consensus 3 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~-------~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~ 71 (101)
.++++++.++ ++.|+++||++|+++...+.+ .+-.+....||.+.+. .+.+..+..++|++ |-+
T Consensus 10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-----DLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-----HHHHhCCCccccEEEEEeC
Confidence 3556666665 567999999999998877653 2322445555544332 34444688999987 456
Q ss_pred CeE
Q 034205 72 GQL 74 (101)
Q Consensus 72 g~~ 74 (101)
|+.
T Consensus 85 g~~ 87 (462)
T TIGR01130 85 GED 87 (462)
T ss_pred Ccc
Confidence 664
No 185
>PLN02395 glutathione S-transferase
Probab=97.67 E-value=0.00045 Score=45.06 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=54.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+++|+.++|+ +++++-+|.++|++|+.+.++...... ..+.+.+.+....+|++..+|..+.....+.++..
T Consensus 3 ~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKGEH-KQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccCCc-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 6889877754 799999999999999998887642210 11244556788999999999988888888777654
No 186
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0001 Score=49.83 Aligned_cols=56 Identities=21% Similarity=0.364 Sum_probs=41.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCc-----EEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHP-----MVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLV 75 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~-----~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~i 75 (101)
+|=|+.+||..|+++..+|..+.-+| -.+|||+-.... .-.|....|+. |.||..|
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~ta-------a~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTA-------ATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchh-------hhcCcccCceEEEEecCeEe
Confidence 55699999999999999998876554 567776543322 22588999985 7899865
No 187
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00029 Score=51.84 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=46.9
Q ss_pred hHHHhhhcCCcE--EEEecCCChhHHHH-------HHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EE
Q 034205 2 DKVTRLASEKGV--VIFSKSSCCLCYAV-------NILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FI 70 (101)
Q Consensus 2 ~~~~~~~~~~~v--vif~~~~Cp~C~~~-------~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv 70 (101)
+.+.+.+..+.. |-|+.|||.+|.+. ...|.+.+-+...-.||-..+. .+...++.+.+|++ |.
T Consensus 33 dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-----~~~~~y~v~gyPTlkiFr 107 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-----DLASKYEVRGYPTLKIFR 107 (493)
T ss_pred ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-----hhHhhhcCCCCCeEEEEe
Confidence 346677777764 56999999999854 4455566556667777755542 34444688999986 77
Q ss_pred CCeE
Q 034205 71 SGQL 74 (101)
Q Consensus 71 ~g~~ 74 (101)
||+.
T Consensus 108 nG~~ 111 (493)
T KOG0190|consen 108 NGRS 111 (493)
T ss_pred cCCc
Confidence 8874
No 188
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.56 E-value=0.00024 Score=42.36 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=22.8
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEe
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEI 43 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~v 43 (101)
.-++.|+.+|||+|+.....|.++.-.+..+-|
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i 54 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQLAADYPVVSV 54 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHHHhhCCEEEE
Confidence 346779999999999998777654333433333
No 189
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.54 E-value=0.00067 Score=50.94 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=35.1
Q ss_pred EEEEecCCChhHHHHHHH-H------HhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE-E--CCeE
Q 034205 13 VVIFSKSSCCLCYAVNIL-F------QELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF-I--SGQL 74 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~-l------~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf-v--~g~~ 74 (101)
++.|+.+||++|+...+. + ++++ .+..+.+|.+.+..+.+ .+.+..+...+|+++ + ||+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~-~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDV-ALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhH-HHHHHcCCCCCCEEEEECCCCCC
Confidence 456999999999988664 2 1222 34444444433322222 344446889999874 3 4654
No 190
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.54 E-value=0.0004 Score=39.62 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=33.5
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCcHHHHHHHHhh
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL----G--VHPMVYEIDQDPEGKEMEKALMRM 59 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~----~--i~~~~~~vd~~~~~~~~~~~l~~~ 59 (101)
-++.|.++||+.|.+..+.|.++ + -.++.+-|+.+++..+.++.+++.
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 36779999999999888887543 3 566777777776666666666654
No 191
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.52 E-value=0.00087 Score=41.06 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=20.4
Q ss_pred CCCCCccEEEECCeEeechHHHHhH
Q 034205 60 GCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
.|...+|+++|||+.+-|.++...+
T Consensus 125 ~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 125 LGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred cCCCcCCeEEECCEEecCCCCHHHH
Confidence 4678999999999999998765544
No 192
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=97.49 E-value=0.0012 Score=43.20 Aligned_cols=71 Identities=11% Similarity=0.255 Sum_probs=51.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE-----CCe--EeechHHHHhHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI-----SGQ--LVGSTNEVMSLH 85 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv-----~g~--~igg~~~~~~~~ 85 (101)
+++|+.+ +|+|++++-+|.++|++|+.+.++..... ...+.+.+.+....+|++.. +|. .+-...-|..+.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGG-QFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccc-cCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 4688877 69999999999999999999988764321 11124556678899999987 452 466666666544
No 193
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.49 E-value=0.00037 Score=42.90 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=19.2
Q ss_pred HHhhhcCCc--EEEEecCCChhHHHHHHHH
Q 034205 4 VTRLASEKG--VVIFSKSSCCLCYAVNILF 31 (101)
Q Consensus 4 ~~~~~~~~~--vvif~~~~Cp~C~~~~~~l 31 (101)
++.+.+.++ ++.|++.|||+|+++...+
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 344444443 4568899999999987754
No 194
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.48 E-value=0.00043 Score=40.73 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=32.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELG----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
-++.|..+|||+|+.....+.++. -....+-+. +.+..+..+.+++. +...+|.++
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~-~~~~~p~~~ 83 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKH-GLEAFPYVL 83 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHh-CCCCCcEEe
Confidence 456789999999998888776542 123444342 23333444444443 444577664
No 195
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.48 E-value=0.00031 Score=40.57 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcC----CCcEEEEecCCCCcHHHHHHHHhhCCCC--CccEEEE
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELG----VHPMVYEIDQDPEGKEMEKALMRMGCNA--PVPAVFI 70 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~----i~~~~~~vd~~~~~~~~~~~l~~~~g~~--~vP~vfv 70 (101)
..-+++|..+||+.|..++..+.+.. -+...+-+|.+... .+....|.. ++|++.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-----~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-----RHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-----HHHHHcCCChhhCCEEEE
Confidence 34567799999999999999997643 22344444433321 123334666 8999854
No 196
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.46 E-value=0.00023 Score=44.95 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=34.5
Q ss_pred hhcCCcEE-EEecCCChhHHHHHHHH----H---hcCCCcEEEEecCCCCcHHHHHHHHh
Q 034205 7 LASEKGVV-IFSKSSCCLCYAVNILF----Q---ELGVHPMVYEIDQDPEGKEMEKALMR 58 (101)
Q Consensus 7 ~~~~~~vv-if~~~~Cp~C~~~~~~l----~---~~~i~~~~~~vd~~~~~~~~~~~l~~ 58 (101)
.+...-|. .|+..|||.|+.....| + +.+.+++.+=|+.+.+..++.+++..
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~ 89 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLE 89 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHh
Confidence 33333343 37778999999655444 3 33557999999988877766666654
No 197
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=97.44 E-value=0.00034 Score=46.10 Aligned_cols=67 Identities=22% Similarity=0.445 Sum_probs=36.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC----cEEEEec-----------CCCCcHHHHHHHHhhCC--CCCccEEEECCe-E
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVH----PMVYEID-----------QDPEGKEMEKALMRMGC--NAPVPAVFISGQ-L 74 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~----~~~~~vd-----------~~~~~~~~~~~l~~~~g--~~~vP~vfv~g~-~ 74 (101)
|.+|++.+|+.|-.|-++|.++.-. .--..|| ..+....-|+...+..| ....|+++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 6799999999999999999776322 1222222 22222233344444433 456799999996 5
Q ss_pred eechH
Q 034205 75 VGSTN 79 (101)
Q Consensus 75 igg~~ 79 (101)
..|++
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 66665
No 198
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.40 E-value=0.0012 Score=42.80 Aligned_cols=20 Identities=20% Similarity=0.612 Sum_probs=16.2
Q ss_pred EEEEecCCChhHHHHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQ 32 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~ 32 (101)
|+.|+.+|||.|++....+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~ 97 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIK 97 (189)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 56699999999998766664
No 199
>PRK11752 putative S-transferase; Provisional
Probab=97.38 E-value=0.0019 Score=43.97 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=54.2
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhc------CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECC----eEeech
Q 034205 9 SEKGVVIFSKSSCCLCYAVNILFQEL------GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG----QLVGST 78 (101)
Q Consensus 9 ~~~~vvif~~~~Cp~C~~~~~~l~~~------~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g----~~igg~ 78 (101)
...++++|+.+ +|+|++++-+|.++ +++|+.+.|+...... ..+++.+.+....+|++..++ ..+..+
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~-~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES 118 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQ-FSSGFVEINPNSKIPALLDRSGNPPIRVFES 118 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccc-cCHHHHhhCCCCCCCEEEeCCCCCCeEEEcH
Confidence 44579999865 99999999999997 8889988887543211 112445667889999998752 467777
Q ss_pred HHHHhHH
Q 034205 79 NEVMSLH 85 (101)
Q Consensus 79 ~~~~~~~ 85 (101)
..|....
T Consensus 119 ~AIl~YL 125 (264)
T PRK11752 119 GAILLYL 125 (264)
T ss_pred HHHHHHH
Confidence 7776654
No 200
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=97.38 E-value=0.0035 Score=34.63 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=48.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCC-CCccEEEEC-CeEeechHHHHhH
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCN-APVPAVFIS-GQLVGSTNEVMSL 84 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~-~~vP~vfv~-g~~igg~~~~~~~ 84 (101)
+.+|..++ .|..++-+|...|++|+.+.++.......- +.+.+.... ..+|.+..+ |..+.....+...
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~-~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKS-PEFLAINPMFGKVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGS-HHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccc-hhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence 55666666 889999999999999999988864332111 244455566 899999999 9988887766554
No 201
>PTZ00102 disulphide isomerase; Provisional
Probab=97.36 E-value=0.00025 Score=51.43 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=32.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC------cEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVH------PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~------~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
++.|+++||++|+.+...+.+.... .....+|.+.+.. .....+.+.+|+++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-----~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-----PLEEFSWSAFPTIL 436 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-----chhcCCCcccCeEE
Confidence 5679999999999999988664211 2233333332221 12224678899874
No 202
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.35 E-value=0.0014 Score=41.81 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.0
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~ 34 (101)
++.|+.+|||.|++....+.++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 5668999999999987777654
No 203
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.33 E-value=0.002 Score=40.60 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=36.5
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHH-----------------HHHHhhCCCCCccEEE
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEME-----------------KALMRMGCNAPVPAVF 69 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~-----------------~~l~~~~g~~~vP~vf 69 (101)
-++.|..+|||+|+.....|.+.. -.+..+-|+.+....+++ ..+.+..|...+|.+|
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~ 143 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTF 143 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEE
Confidence 457788999999998766664332 123444444433322221 1333445778889754
Q ss_pred -EC--CeEe
Q 034205 70 -IS--GQLV 75 (101)
Q Consensus 70 -v~--g~~i 75 (101)
++ |+.+
T Consensus 144 lid~~g~i~ 152 (173)
T PRK03147 144 LIDKDGKVV 152 (173)
T ss_pred EECCCCcEE
Confidence 54 6654
No 204
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.32 E-value=0.0028 Score=35.03 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 20 SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
.+|+|-++..+|+-.+++|+.+... ++.. +....+|.+..+|+.|++++.+++..+
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~-n~~~----------sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN-NPWR----------SPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC-CCCC----------CCCCccCEEEECCEEecChHHHHHHHH
Confidence 5799999999999999999765332 2221 345679999999999999998888654
No 205
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.30 E-value=0.001 Score=38.25 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=28.5
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCC-cHHHHHHHHh
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPE-GKEMEKALMR 58 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~-~~~~~~~l~~ 58 (101)
..-++.|..+|||+|.+....|.++. -.+..+-|+.+++ .+.+.+.+.+
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence 34467789999999998777665432 1234444444443 4444444433
No 206
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=97.25 E-value=0.0017 Score=37.23 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=35.8
Q ss_pred EEEecC-CChhHH------HHHHHHHhc--------CCCcEEEEecCCCCcHHHHHHHHhh-CCCCCccEEEECCeEeec
Q 034205 14 VIFSKS-SCCLCY------AVNILFQEL--------GVHPMVYEIDQDPEGKEMEKALMRM-GCNAPVPAVFISGQLVGS 77 (101)
Q Consensus 14 vif~~~-~Cp~C~------~~~~~l~~~--------~i~~~~~~vd~~~~~~~~~~~l~~~-~g~~~vP~vfv~g~~igg 77 (101)
++|++. -|+.|. ....+|+.. ...++++||...++...-++...++ ....-+|.|.++|+.+|.
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 477776 488774 455555432 2346788888776654444444443 345678999999999974
No 207
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=97.17 E-value=0.0055 Score=34.10 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 19 SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
+..+.|.++..+|...|++|+.+++...+ . .+....+|.+.+||+.|+...-+..+..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~-------~---~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE-------F---MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc-------c---cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 46788999999999999999988542210 1 1234679999999999999988777543
No 208
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.0013 Score=38.09 Aligned_cols=70 Identities=11% Similarity=0.207 Sum_probs=45.3
Q ss_pred hcCCcEEEEecC-CChhHH------HHHHHHHhc------CCC--cEEEEecCCCCcHHHHHHHHhh-CCCCCccEEEEC
Q 034205 8 ASEKGVVIFSKS-SCCLCY------AVNILFQEL------GVH--PMVYEIDQDPEGKEMEKALMRM-GCNAPVPAVFIS 71 (101)
Q Consensus 8 ~~~~~vvif~~~-~Cp~C~------~~~~~l~~~------~i~--~~~~~vd~~~~~~~~~~~l~~~-~g~~~vP~vfv~ 71 (101)
.+..++++|++. -|..|. ..-.+|+.. +.+ |+++||...+......+...++ ...--+|.|.++
T Consensus 2 ~~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivve 81 (106)
T COG4837 2 VNEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVE 81 (106)
T ss_pred CceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEc
Confidence 345678999987 477775 445555432 333 5778887666555444444444 345678999999
Q ss_pred CeEeec
Q 034205 72 GQLVGS 77 (101)
Q Consensus 72 g~~igg 77 (101)
|+.++.
T Consensus 82 deiVae 87 (106)
T COG4837 82 DEIVAE 87 (106)
T ss_pred ceEeec
Confidence 999863
No 209
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0025 Score=42.32 Aligned_cols=58 Identities=28% Similarity=0.424 Sum_probs=43.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcE--EEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPM--VYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~--~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
.|.||+..+|..|-..-+.|.+.|.--. .++-...+.. +++ .+..++|.||+||+.+-
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~-----~~~--~~V~SvP~Vf~DGel~~ 71 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL-----AFE--KGVISVPSVFIDGELVY 71 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHH-----Hhh--cceeecceEEEcCeEEE
Confidence 5889999999999999999999987644 4443332221 222 46899999999999753
No 210
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=97.10 E-value=0.0058 Score=37.97 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=53.1
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeech---HHHHhHH
Q 034205 9 SEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGST---NEVMSLH 85 (101)
Q Consensus 9 ~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~---~~~~~~~ 85 (101)
....+++|..|+|.=|+.-.+.++..|.+...++.+. ...+++.+.-.....+-=+..|||.+|-|. +++..+.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d---~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll 100 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD---FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL 100 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc---HHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence 3457999999999999999999999997766666543 222222221112235667899999999987 4555555
Q ss_pred HcCC
Q 034205 86 LSGN 89 (101)
Q Consensus 86 ~~g~ 89 (101)
+++.
T Consensus 101 ~~~p 104 (149)
T COG3019 101 AEKP 104 (149)
T ss_pred hCCC
Confidence 4443
No 211
>PRK10542 glutathionine S-transferase; Provisional
Probab=97.09 E-value=0.0033 Score=40.51 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=49.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE-CCeEeechHHHHhHH
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI-SGQLVGSTNEVMSLH 85 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv-~g~~igg~~~~~~~~ 85 (101)
.+|+.++ +.+.+++-+|.++|++|+.+.++.........+.+.+.+....+|++.+ ||..+-....+.+..
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHH
Confidence 4666553 3467788889999999998888754221000123556678899999986 677888887777754
No 212
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.08 E-value=0.0055 Score=36.86 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=17.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhc
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~ 34 (101)
-|+.|..+|||+|.+....|+++
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 35668899999999887777554
No 213
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=97.05 E-value=0.013 Score=32.88 Aligned_cols=71 Identities=7% Similarity=-0.064 Sum_probs=46.9
Q ss_pred EEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCc----HHHHHHHH-hhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 15 IFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEG----KEMEKALM-RMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~----~~~~~~l~-~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
+|+-..-+.|++++-+|...|++|+.+.++..+.. .+...... ......++|++..+|..+.-..-+....
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 34444457888999999999999999888754321 11111110 0114579999999998888777666554
No 214
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0025 Score=40.44 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=36.7
Q ss_pred EEEEecCCChhHHHHHHHHHh------cCCC-c--EEEEecCCC---------CcHHHHHHHHhhCCCCCccEEE-EC--
Q 034205 13 VVIFSKSSCCLCYAVNILFQE------LGVH-P--MVYEIDQDP---------EGKEMEKALMRMGCNAPVPAVF-IS-- 71 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~------~~i~-~--~~~~vd~~~---------~~~~~~~~l~~~~g~~~vP~vf-v~-- 71 (101)
+.||.+++|+||.+.+.-+.. +=.+ | -++++.... +...-.++|++..+.++.|+++ .+
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence 789999999999988776522 1111 2 222322111 0111223566667899999875 44
Q ss_pred CeEee
Q 034205 72 GQLVG 76 (101)
Q Consensus 72 g~~ig 76 (101)
|+.|+
T Consensus 126 Gk~Il 130 (182)
T COG2143 126 GKTIL 130 (182)
T ss_pred CCEEE
Confidence 34444
No 215
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.03 E-value=0.0066 Score=35.99 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=36.1
Q ss_pred HHhhhcCCc--EEEEecCCChhHHHHHH-HHHhc------CCCcEEEEecCCC-CcHHHHHHHHhhCCCCCccEE-EE
Q 034205 4 VTRLASEKG--VVIFSKSSCCLCYAVNI-LFQEL------GVHPMVYEIDQDP-EGKEMEKALMRMGCNAPVPAV-FI 70 (101)
Q Consensus 4 ~~~~~~~~~--vvif~~~~Cp~C~~~~~-~l~~~------~i~~~~~~vd~~~-~~~~~~~~l~~~~g~~~vP~v-fv 70 (101)
++.+.+..+ ++.++.+||++|+...+ +|..- +-.|..+.+|... +.. .+....+...+|++ |+
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~----~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQ----RFLQSYKVDKYPHIAII 83 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHH----HHHHHhCccCCCeEEEE
Confidence 334444444 45578889999998754 55332 2235445554432 333 34444678889987 44
No 216
>PTZ00057 glutathione s-transferase; Provisional
Probab=96.99 E-value=0.011 Score=38.50 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=53.9
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHH-HHHHH--hhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEM-EKALM--RMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~-~~~l~--~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
.++++|+-+..+.|..++-+|...|++|+.+.++.... .-+ .+.+. +.+....+|++.+||..+....-+....
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~-~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGD-AFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccch-HHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 34789988888999999999999999999987753221 100 01112 3467889999999998888887766643
No 217
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.92 E-value=0.00027 Score=42.84 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=24.5
Q ss_pred CCChhHHHHHHHHHhc------CCCcEEEEecCCCCcHHHHHHHHh--hCCCCCccEEEE
Q 034205 19 SSCCLCYAVNILFQEL------GVHPMVYEIDQDPEGKEMEKALMR--MGCNAPVPAVFI 70 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~------~i~~~~~~vd~~~~~~~~~~~l~~--~~g~~~vP~vfv 70 (101)
+|||+|+++..++.+. +..+.++.|...+.=....-.++. ......+|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 4999999999877542 233445555432210000001222 245678999974
No 218
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.90 E-value=0.0091 Score=36.59 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=16.9
Q ss_pred EEEEecC-CChhHHHHHHHHHhc
Q 034205 13 VVIFSKS-SCCLCYAVNILFQEL 34 (101)
Q Consensus 13 vvif~~~-~Cp~C~~~~~~l~~~ 34 (101)
|+.|..+ |||+|+.....|.++
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l 54 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNEL 54 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHH
T ss_pred EEEEEccCCCCcchhhhhhHHhh
Confidence 6668888 999999887666543
No 219
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.005 Score=39.98 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=49.6
Q ss_pred EecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcC
Q 034205 16 FSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSG 88 (101)
Q Consensus 16 f~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g 88 (101)
|.++.|.+ +++-.|.=.+++|+++-|+--.+..+.-..+++.+....||++.+||..+-..--+++..++-
T Consensus 11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred hhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhc
Confidence 44556665 666667777778877777654443333446777788899999999999888777777665543
No 220
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.85 E-value=0.003 Score=44.13 Aligned_cols=67 Identities=13% Similarity=0.294 Sum_probs=45.0
Q ss_pred hHHHhhhcCCcEEE--EecCCChhHHHHHHHHHhcCCCc-----------EEEEecCCCCcHHHHHHHHhhCCCCCccEE
Q 034205 2 DKVTRLASEKGVVI--FSKSSCCLCYAVNILFQELGVHP-----------MVYEIDQDPEGKEMEKALMRMGCNAPVPAV 68 (101)
Q Consensus 2 ~~~~~~~~~~~vvi--f~~~~Cp~C~~~~~~l~~~~i~~-----------~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v 68 (101)
+.+..++..+.+++ |+++|||+++..+.+|.+....| -.+|.+... .++..+....+|++
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~-------~ia~ky~I~KyPTl 76 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED-------DIADKYHINKYPTL 76 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh-------HHhhhhccccCcee
Confidence 45677788887654 99999999999999997653221 223333322 44444567778874
Q ss_pred --EECCeEe
Q 034205 69 --FISGQLV 75 (101)
Q Consensus 69 --fv~g~~i 75 (101)
|.||..+
T Consensus 77 KvfrnG~~~ 85 (375)
T KOG0912|consen 77 KVFRNGEMM 85 (375)
T ss_pred eeeeccchh
Confidence 8898644
No 221
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.68 E-value=0.0043 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.5
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~ 34 (101)
++.|..+|||+|++....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 4569999999999998888654
No 222
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.65 E-value=0.005 Score=44.28 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=31.6
Q ss_pred EEEEecCCChhHHHHHHHHHhc----CC---CcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL----GV---HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~----~i---~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
++.|+++||++|+.....+.++ .- .+....+|.+.+. +.. .+...+|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------VPP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------cCC-CCccccCEEEE
Confidence 5669999999999998888653 11 2333444433221 111 46788998754
No 223
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.65 E-value=0.015 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.2
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034205 13 VVIFSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~ 34 (101)
|+-|+.+|||.|+.....|+++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4559999999999988888654
No 224
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.61 E-value=0.0025 Score=44.63 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=38.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEE----EEecCCCCcHHHHHHHHhhCCCCCccEE-EECCeEe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMV----YEIDQDPEGKEMEKALMRMGCNAPVPAV-FISGQLV 75 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~----~~vd~~~~~~~~~~~l~~~~g~~~vP~v-fv~g~~i 75 (101)
.|-|+.|||.+|++...++++.|.+... +.|......+- ..++.-.|.+.+|+| |..|.+.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f--~aiAnefgiqGYPTIk~~kgd~a 112 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF--PAIANEFGIQGYPTIKFFKGDHA 112 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc--hhhHhhhccCCCceEEEecCCee
Confidence 5679999999999999999887755322 22222211111 123333588899987 5555443
No 225
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0033 Score=38.08 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=28.3
Q ss_pred CCChhHHHHHHHHHhc------CCCcEEEEecCCCCcHHHHHHHHhhCCC-CCccEEEE
Q 034205 19 SSCCLCYAVNILFQEL------GVHPMVYEIDQDPEGKEMEKALMRMGCN-APVPAVFI 70 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~------~i~~~~~~vd~~~~~~~~~~~l~~~~g~-~~vP~vfv 70 (101)
+|||+|.+|..++.+. ++.+..++|...+.=....-.+..-.+. ..+|++.-
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 4999999999887542 2335566666544211100012222233 56788753
No 226
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0012 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCc
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHP 38 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~ 38 (101)
++-|++|||+||.+...++++++-.|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHh
Confidence 56799999999999999998886544
No 227
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.47 E-value=0.003 Score=42.85 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.5
Q ss_pred cEEEEecCCChhHHHHHHHHHh
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
.|++|+.+.||||+++...+..
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4889999999999999776643
No 228
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.024 Score=37.78 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=57.1
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
++.+|+.+.-|.|+++...+...|++|+.+.++..... ....++.+.....++|++.-+|-.+-....|....
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge-~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl 74 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGE-QKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYL 74 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccc-cCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHH
Confidence 46799999999999999999999999999877754321 12234556677889999999998888876666544
No 229
>PHA03075 glutaredoxin-like protein; Provisional
Probab=96.38 E-value=0.0074 Score=36.32 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=29.2
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEec
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEID 44 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd 44 (101)
..+.+|++|.|+-|..+..+|.++.-+|+.+.|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 4578999999999999999999988888766665
No 230
>smart00594 UAS UAS domain.
Probab=96.38 E-value=0.043 Score=33.02 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHhhhcCC--cEEEEecCCChhHHHHHH-HHHhc------CCCcEEEEecCC-CCcHHHHHHHHhhCCCCCccEEEE
Q 034205 4 VTRLASEK--GVVIFSKSSCCLCYAVNI-LFQEL------GVHPMVYEIDQD-PEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 4 ~~~~~~~~--~vvif~~~~Cp~C~~~~~-~l~~~------~i~~~~~~vd~~-~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
++++.+.. .++.+..+||++|+...+ +|..- +-.|-..-+|.. +++. .+....+..++|.+.+
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~----~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQ----RVSQFYKLDSFPYVAI 92 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHH----HHHHhcCcCCCCEEEE
Confidence 34444443 356688899999997644 34322 113444334332 2232 3444567889998754
No 231
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=96.31 E-value=0.046 Score=33.35 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=45.0
Q ss_pred CCcEEEEecCCC------hh--------HHHHHHHHHhcCCCcEEEEecCCCCc----HHHHHHHHhhCCCCCccEEEEC
Q 034205 10 EKGVVIFSKSSC------CL--------CYAVNILFQELGVHPMVYEIDQDPEG----KEMEKALMRMGCNAPVPAVFIS 71 (101)
Q Consensus 10 ~~~vvif~~~~C------p~--------C~~~~~~l~~~~i~~~~~~vd~~~~~----~~~~~~l~~~~g~~~vP~vfv~ 71 (101)
|++|.||=-.-| .. -..+..+|++.|++...+++.++|.. ..+.+.|+.. |...+|.++||
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~-G~e~LPitlVd 79 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE-GAEALPITLVD 79 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH--GGG-SEEEET
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc-CcccCCEEEEC
Confidence 456777776543 22 13556677889999999999998863 3355566544 78999999999
Q ss_pred CeE--eechHHHHhHH
Q 034205 72 GQL--VGSTNEVMSLH 85 (101)
Q Consensus 72 g~~--igg~~~~~~~~ 85 (101)
|+. .|.|-...++.
T Consensus 80 Geiv~~G~YPt~eEl~ 95 (123)
T PF06953_consen 80 GEIVKTGRYPTNEELA 95 (123)
T ss_dssp TEEEEESS---HHHHH
T ss_pred CEEEEecCCCCHHHHH
Confidence 986 47776555543
No 232
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.30 E-value=0.023 Score=38.89 Aligned_cols=64 Identities=11% Similarity=0.290 Sum_probs=48.8
Q ss_pred CCcEEEEecC---C----ChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHH
Q 034205 10 EKGVVIFSKS---S----CCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVM 82 (101)
Q Consensus 10 ~~~vvif~~~---~----Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~ 82 (101)
...|.+|.-+ . .|+|-++.-+|...+++|+.++-... ..+...++|-|-.||++|.+.+-+.
T Consensus 43 kD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-----------~rSr~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 43 KDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-----------RRSRNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred cCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-----------eeccCCCcceEEeCCeeccccHHHH
Confidence 3445555543 3 57899999999999999998875432 2256789999999999999998765
Q ss_pred hH
Q 034205 83 SL 84 (101)
Q Consensus 83 ~~ 84 (101)
..
T Consensus 112 ~~ 113 (281)
T KOG4244|consen 112 DR 113 (281)
T ss_pred HH
Confidence 53
No 233
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.011 Score=42.39 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=43.8
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHH---HHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeech
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAV---NILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGST 78 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~---~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~ 78 (101)
|.++.+-......-|.+-+|..|..+ .+++.-++-..+..-||-.- ++++... -+..++|+||.||+.+|.-
T Consensus 109 eqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~----Fq~Evea-r~IMaVPtvflnGe~fg~G 183 (520)
T COG3634 109 EQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGAL----FQDEVEA-RNIMAVPTVFLNGEEFGQG 183 (520)
T ss_pred HHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchh----hHhHHHh-ccceecceEEEcchhhccc
Confidence 34444444455666666655555554 45555566666666665432 3334433 3688999999999987753
No 234
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.10 E-value=0.044 Score=34.59 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=16.1
Q ss_pred cEEEEecCCChhHHHHHHHHHh
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
.|+.|..+|||.|.+....|.+
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~ 49 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNR 49 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 3566888999999875555543
No 235
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.10 E-value=0.017 Score=36.87 Aligned_cols=72 Identities=18% Similarity=0.367 Sum_probs=31.3
Q ss_pred HHhhhcCCc-EE-EEecCCChhHHHHHH-HHHh------cCCCcEEEEecCC--CCcHHH-HHHHHhhCCCCCccEE-EE
Q 034205 4 VTRLASEKG-VV-IFSKSSCCLCYAVNI-LFQE------LGVHPMVYEIDQD--PEGKEM-EKALMRMGCNAPVPAV-FI 70 (101)
Q Consensus 4 ~~~~~~~~~-vv-if~~~~Cp~C~~~~~-~l~~------~~i~~~~~~vd~~--~~~~~~-~~~l~~~~g~~~vP~v-fv 70 (101)
++++-+.++ |. -++.+||.+|+.+.. .+.. ++-.|--|.||.+ |+.... ..+....+|....|.. |+
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfl 109 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFL 109 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEE
Confidence 344433443 43 367789999997754 3332 2333555555543 443332 1222333566677764 44
Q ss_pred --CCeEe
Q 034205 71 --SGQLV 75 (101)
Q Consensus 71 --~g~~i 75 (101)
+|+.+
T Consensus 110 tPdg~p~ 116 (163)
T PF03190_consen 110 TPDGKPF 116 (163)
T ss_dssp -TTS-EE
T ss_pred CCCCCee
Confidence 56654
No 236
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.09 E-value=0.035 Score=36.12 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=25.5
Q ss_pred cEEEEecCCChhHHHHHHHHHhc---CCCc------EEEEecC
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL---GVHP------MVYEIDQ 45 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~---~i~~------~~~~vd~ 45 (101)
.++-|..+|||.|+.-..++.++ ++++ ..+++|.
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd 104 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADD 104 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECcc
Confidence 46779999999999888887654 5666 5566554
No 237
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=96.04 E-value=0.014 Score=39.29 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=38.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEE---------------EecCCCCcHHHHHHHHhhCCC--CCccEEEECCe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVY---------------EIDQDPEGKEMEKALMRMGCN--APVPAVFISGQ 73 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~---------------~vd~~~~~~~~~~~l~~~~g~--~~vP~vfv~g~ 73 (101)
|.+|++.+|..|-.+-..|.++.-+...+ |--...+..+-|....+..+. ...||+++||+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 67899999999999999998875443222 111222222223333333333 45699999997
No 238
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.97 E-value=0.046 Score=33.10 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=31.3
Q ss_pred cEEEEecCCChh-HHHHHHHHHhc-------C---CCcEEEEecCC-CCcHHHHHHHHhhCCCCCccEEEE
Q 034205 12 GVVIFSKSSCCL-CYAVNILFQEL-------G---VHPMVYEIDQD-PEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 12 ~vvif~~~~Cp~-C~~~~~~l~~~-------~---i~~~~~~vd~~-~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
-|+.|..+|||+ |.+....|.+. + +.+-.+.+|.. +....+++.+++. + ..+|.+.-
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~-~-~~~~~l~~ 93 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAF-G-PGWIGLTG 93 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHh-C-CCcEEEEC
Confidence 467789999998 98665555432 2 44444444433 2234455555544 3 34554443
No 239
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.089 Score=34.85 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=55.9
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
.+..++.-+..+.|..++.+|+-.+++|+...+..... .. .++.......+|++-|||..|...-.+....
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~---~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WE---ELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hh---hhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 34566666788999999999999999999999987654 21 3444467789999999999998887766653
No 240
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.93 E-value=0.031 Score=42.04 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHhhhcCCc---EE-EEecCCChhHHHHHHHHHh------cCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 3 KVTRLASEKG---VV-IFSKSSCCLCYAVNILFQE------LGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 3 ~~~~~~~~~~---vv-if~~~~Cp~C~~~~~~l~~------~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
++++.+..++ |. =|+.+||-.|+..++..-. .-..+.....|...+..+.++.|++. |.-.+|.+++
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~-~~~G~P~~~f 540 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL-GVFGVPTYLF 540 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc-CCCCCCEEEE
Confidence 4555555544 43 3999999999998777532 11224555556555666667777775 6888998743
No 241
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.91 E-value=0.016 Score=39.72 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=49.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC---CcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEeechHHHHhH---
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGV---HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLVGSTNEVMSL--- 84 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i---~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~igg~~~~~~~--- 84 (101)
|+-|+.+++|.|..+-..|..+.. ...++.|....... . .......+|+| |.+|..++.+-.+.+.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~-----~-~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~ 223 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPA-----S-ENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGD 223 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCT-----T-TTS-TTC-SEEEEEETTEEEEEECTGGGCT-T
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCc-----c-cCCcccCCCEEEEEECCEEEEeEEehHHhcCC
Confidence 455889999999999888876532 23444444322110 0 11245779987 5699887766443332
Q ss_pred -HHcCCchhhcccCCCCC
Q 034205 85 -HLSGNLIPLLKPYQPFS 101 (101)
Q Consensus 85 -~~~g~L~~~l~~~g~~~ 101 (101)
....+|+.+|..+|++.
T Consensus 224 df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 224 DFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp T--HHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 22336899999999873
No 242
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.89 E-value=0.031 Score=34.72 Aligned_cols=55 Identities=11% Similarity=0.031 Sum_probs=30.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCC-------CCcHHHHHHHHhhCCCCCccEEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQD-------PEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~-------~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
++.|..+||| |..-...|.++. -.+..+-|..+ ....++++.+++..+ .++|.+.
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~ 92 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFA 92 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeee
Confidence 4559999999 998766665431 12344444321 123445556554233 4678763
No 243
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.83 E-value=0.046 Score=35.81 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=15.7
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 034205 13 VVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~ 33 (101)
++.|..+|||+|.+-...|.+
T Consensus 43 lv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 456999999999975555544
No 244
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.011 Score=42.28 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=37.6
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcC----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELG----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
..-++.|..|||++|.+....+.+.. -....-.||..... .+...++...+|++.+
T Consensus 48 ~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~-----~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 48 SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK-----DLCEKYGIQGFPTLKV 107 (383)
T ss_pred CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH-----HHHHhcCCccCcEEEE
Confidence 34588999999999999888876542 22334444443332 3455578999999743
No 245
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.74 E-value=0.11 Score=28.65 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHhcCCC---cEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE-CCeEeechHHHHhHH
Q 034205 20 SCCLCYAVNILFQELGVH---PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI-SGQLVGSTNEVMSLH 85 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~i~---~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv-~g~~igg~~~~~~~~ 85 (101)
--|.|-++..+|+-.+.+ ++.+..+. +.. +....+|.+.. +|+.+.|+.++.+..
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~~----------Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PWL----------SPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CCc----------CCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 368999999999999998 55444432 221 45678999999 999999999998753
No 246
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.66 E-value=0.14 Score=30.08 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=32.6
Q ss_pred HhhhcCCcEEEEecC-CChhHHHHHHHHHhc----C-CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 5 TRLASEKGVVIFSKS-SCCLCYAVNILFQEL----G-VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 5 ~~~~~~~~vvif~~~-~Cp~C~~~~~~l~~~----~-i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
.++....-|+.|..+ |||.|......|.++ . ..+..+-|..++. .++.+.++... ..+|.+.-
T Consensus 21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 21 SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP-EEIKQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH-HHHHHHHHHHT--CSSEEEEE
T ss_pred HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc-cchhhhhhhhc--cccccccC
Confidence 344333345556666 999998766555442 1 1234555554332 23444444332 55666554
No 247
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.53 E-value=0.054 Score=32.94 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=16.0
Q ss_pred cEEEEe-cCCChhHHHHHHHHHhc
Q 034205 12 GVVIFS-KSSCCLCYAVNILFQEL 34 (101)
Q Consensus 12 ~vvif~-~~~Cp~C~~~~~~l~~~ 34 (101)
.|++|. .+|||.|+.-...|.++
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~ 49 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKL 49 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHH
Confidence 345554 78999999876666543
No 248
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=95.49 E-value=0.05 Score=32.11 Aligned_cols=71 Identities=13% Similarity=0.249 Sum_probs=43.6
Q ss_pred EEecCCChhHHHHHHHHHhcCC--CcEEEEecCCCCcHHHHHHHHhhC--CCCCccEEEECCe-EeechHHHHhHHHc
Q 034205 15 IFSKSSCCLCYAVNILFQELGV--HPMVYEIDQDPEGKEMEKALMRMG--CNAPVPAVFISGQ-LVGSTNEVMSLHLS 87 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l~~~~i--~~~~~~vd~~~~~~~~~~~l~~~~--g~~~vP~vfv~g~-~igg~~~~~~~~~~ 87 (101)
||....||.|.....++.+... .+..+++...++..-+ +. ...+ ...+.-.+.-+|+ ...|.+-+..+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALL-AS-YGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHH-Hh-cCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 4677899999999999998864 4677777433332211 00 0001 1123334444776 89999988877553
No 249
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.42 E-value=0.068 Score=34.39 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.2
Q ss_pred EEEecCCChhHHHHHHHHH
Q 034205 14 VIFSKSSCCLCYAVNILFQ 32 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~ 32 (101)
+++..+|||+|.+-...|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 3568999999997555554
No 250
>PLN02412 probable glutathione peroxidase
Probab=95.34 E-value=0.18 Score=32.01 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=14.7
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 034205 13 VVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~ 33 (101)
|+.|..+|||.|.+-...|.+
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHH
Confidence 445889999999965444433
No 251
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.11 E-value=0.12 Score=34.86 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=16.2
Q ss_pred cEEEEecCCChhHHHHHHHHHh
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
-|+.|..+|||.|..-...|.+
T Consensus 102 vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 102 LLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred EEEEEEcCCCcchHHHHHHHHH
Confidence 3567999999999875555543
No 252
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.11 E-value=0.082 Score=38.93 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=49.4
Q ss_pred cCCChhHHHHHHHHHhc--CC-CcEEEEecCCCCcHH-HHHHHHhhCC--CCCccEEEE-------CCeEeechHHHHhH
Q 034205 18 KSSCCLCYAVNILFQEL--GV-HPMVYEIDQDPEGKE-MEKALMRMGC--NAPVPAVFI-------SGQLVGSTNEVMSL 84 (101)
Q Consensus 18 ~~~Cp~C~~~~~~l~~~--~i-~~~~~~vd~~~~~~~-~~~~l~~~~g--~~~vP~vfv-------~g~~igg~~~~~~~ 84 (101)
+..|||=.++.-+-+.+ +. .|....|..+|+..+ +-+-+.+..| ...-|.|+- .|..+||++|+.++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 36899999888776665 44 489999999988654 2222333344 357799964 57899999999987
Q ss_pred HH
Q 034205 85 HL 86 (101)
Q Consensus 85 ~~ 86 (101)
.+
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 54
No 253
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.09 E-value=0.019 Score=32.42 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.1
Q ss_pred EecCCChhHHHHHHHHHhc
Q 034205 16 FSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 16 f~~~~Cp~C~~~~~~l~~~ 34 (101)
|.++|||+|+.+...+.+.
T Consensus 39 f~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EEcCcCHHHHhhchhHHHH
Confidence 3699999999998888654
No 254
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.97 E-value=0.027 Score=35.46 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=19.6
Q ss_pred CCcEEEEecCCChhHHHHHHHHHh
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
...|+.|+...||+|..+...+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 446888999999999988777743
No 255
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.74 E-value=0.034 Score=34.36 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=18.5
Q ss_pred CCCCCccEEEECCeEeechHHHHhH
Q 034205 60 GCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
.|..++|+++|||+.+.|..++.++
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTSHHHH
T ss_pred cCCccccEEEECCEEeCCCCCHHHH
Confidence 4668999999999999876544443
No 256
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=94.70 E-value=0.13 Score=33.29 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=13.8
Q ss_pred CcEEE-Ee-cCCChhHHHHHHHH
Q 034205 11 KGVVI-FS-KSSCCLCYAVNILF 31 (101)
Q Consensus 11 ~~vvi-f~-~~~Cp~C~~~~~~l 31 (101)
..++| |. .+|||.|..-...|
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l 54 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDL 54 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHH
Confidence 34444 44 78999999755444
No 257
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.26 E-value=0.15 Score=38.35 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=34.5
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELG-----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~-----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
.+.+|..+.|++|..++.+|++.. +.++.+|...+. .+.+.++...+|.+.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~-------~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEP-------ESETLPKITKLPTVAL 425 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccch-------hhHhhcCCCcCCEEEE
Confidence 466799999999999999998753 334444433322 1222356778899876
No 258
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=94.21 E-value=0.17 Score=32.02 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=14.4
Q ss_pred EEEEe-cCCChhHHHHHHHHHh
Q 034205 13 VVIFS-KSSCCLCYAVNILFQE 33 (101)
Q Consensus 13 vvif~-~~~Cp~C~~~~~~l~~ 33 (101)
|+.|. .+|||.|......|.+
T Consensus 33 vl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 33 VLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred EEEEECCCCCCcCHHHHHHHHH
Confidence 34454 6899999986666643
No 259
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.13 Score=36.86 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=32.9
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcC------CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELG------VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~------i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
...++.|..|||++|+.....+.+.. .......++... . ..+....+...+|++.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~-~----~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV-H----KSLASRLEVRGYPTLK 223 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch-H----HHHhhhhcccCCceEE
Confidence 34588899999999999877765543 233444444331 1 1233334666777663
No 260
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=93.97 E-value=0.67 Score=27.85 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=25.8
Q ss_pred EEEEe-cCCChhHHHHHHHHHhc----C-CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE
Q 034205 13 VVIFS-KSSCCLCYAVNILFQEL----G-VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV 68 (101)
Q Consensus 13 vvif~-~~~Cp~C~~~~~~l~~~----~-i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v 68 (101)
++.|. +.|||.|......|.++ . -.+..+-|..+. ...+++.+++. + ..+|.+
T Consensus 27 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~-~-~~~~~l 85 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS-VESHAKFAEKY-G-LPFPLL 85 (140)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHh-C-CCceEE
Confidence 44455 57999998654444322 1 123445554432 23444454443 2 245533
No 261
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.96 E-value=0.65 Score=27.59 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=41.5
Q ss_pred HHHhhhc---CCcEEEEecC-CChhHHHHHHHHHhc------CCCcEEEEecCCCCcHHHHHHHHhhCCC-CCccEEE--
Q 034205 3 KVTRLAS---EKGVVIFSKS-SCCLCYAVNILFQEL------GVHPMVYEIDQDPEGKEMEKALMRMGCN-APVPAVF-- 69 (101)
Q Consensus 3 ~~~~~~~---~~~vvif~~~-~Cp~C~~~~~~l~~~------~i~~~~~~vd~~~~~~~~~~~l~~~~g~-~~vP~vf-- 69 (101)
.+.++++ ..+++||=-+ +||-+..|.+-|.+. .+++.+++|-.+ +.+-..+++..|. -.-||++
T Consensus 9 ql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~---R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 9 QLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEY---RPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp HHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG---HHHHHHHHHHHT----SSEEEEE
T ss_pred HHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC---chhHHHHHHHhCCCcCCCcEEEE
Confidence 3444444 4678888766 499999998887543 277888888643 3444466665564 3568874
Q ss_pred ECCeEee
Q 034205 70 ISGQLVG 76 (101)
Q Consensus 70 v~g~~ig 76 (101)
-||+.+-
T Consensus 86 ~~g~~v~ 92 (105)
T PF11009_consen 86 KNGKVVW 92 (105)
T ss_dssp ETTEEEE
T ss_pred ECCEEEE
Confidence 4888663
No 262
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=93.84 E-value=0.073 Score=33.05 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=15.5
Q ss_pred EEEEecCCChhHHHHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQ 32 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~ 32 (101)
|+.|..+|||+|.....-|.
T Consensus 26 vv~~~as~C~~c~~~~~~l~ 45 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQ 45 (153)
T ss_pred EEEEeCCCCCchhhhHHHHH
Confidence 57799999999987665443
No 263
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=93.77 E-value=0.17 Score=30.77 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=14.9
Q ss_pred cEEEEecCC-ChhHHHHHHHHHh
Q 034205 12 GVVIFSKSS-CCLCYAVNILFQE 33 (101)
Q Consensus 12 ~vvif~~~~-Cp~C~~~~~~l~~ 33 (101)
-|+.|..+| ||+|.+-...|.+
T Consensus 29 vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 29 KVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHH
Confidence 344566666 7999987766644
No 264
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=93.77 E-value=0.19 Score=30.19 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=14.7
Q ss_pred cEEEEe-cCCChhHHHHHHHHHh
Q 034205 12 GVVIFS-KSSCCLCYAVNILFQE 33 (101)
Q Consensus 12 ~vvif~-~~~Cp~C~~~~~~l~~ 33 (101)
.++.|. ..|||.|......|.+
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHH
Confidence 344455 6799999976665544
No 265
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.76 E-value=0.2 Score=30.61 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=14.3
Q ss_pred EEEEe-cCCChhHHHHHHHHHh
Q 034205 13 VVIFS-KSSCCLCYAVNILFQE 33 (101)
Q Consensus 13 vvif~-~~~Cp~C~~~~~~l~~ 33 (101)
|++|. .+|||.|.+....|.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHH
Confidence 44454 7899999976655543
No 266
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.59 E-value=0.031 Score=41.99 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=40.3
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCC---------cEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE------C---Ce
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVH---------PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI------S---GQ 73 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~---------~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv------~---g~ 73 (101)
.+|-|..+||++|++....+++.... ...+|.-...+. .+.+-.+.+.+|++.. + |.
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~-----~lCRef~V~~~Ptlryf~~~~~~~~~G~ 134 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENV-----KLCREFSVSGYPTLRYFPPDSQNKTDGS 134 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhh-----hhHhhcCCCCCceeeecCCccccCcCCC
Confidence 46678889999999999998876432 223343333332 4555568899999854 2 56
Q ss_pred Eeec
Q 034205 74 LVGS 77 (101)
Q Consensus 74 ~igg 77 (101)
.+.|
T Consensus 135 ~~~~ 138 (606)
T KOG1731|consen 135 DVSG 138 (606)
T ss_pred cccC
Confidence 6666
No 267
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.52 E-value=0.1 Score=32.16 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.4
Q ss_pred CcEEEEecCCChhHHHHHHHH
Q 034205 11 KGVVIFSKSSCCLCYAVNILF 31 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l 31 (101)
..|++|....||+|.++...+
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHH
Confidence 358899999999999886655
No 268
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.98 E-value=0.25 Score=32.82 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=17.8
Q ss_pred EEecCCChhHHHHHHHH-------HhcCCCcEEEEecC
Q 034205 15 IFSKSSCCLCYAVNILF-------QELGVHPMVYEIDQ 45 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l-------~~~~i~~~~~~vd~ 45 (101)
.|-.+|||.|..-...| .+.|+..--+.+|.
T Consensus 35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35566999998744444 33455444444443
No 269
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.97 E-value=0.028 Score=37.90 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=45.5
Q ss_pred HHHhhhcCCcEEEEecCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE--ECCe
Q 034205 3 KVTRLASEKGVVIFSKSSCCLCYAVNILFQEL-------GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF--ISGQ 73 (101)
Q Consensus 3 ~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-------~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf--v~g~ 73 (101)
..+++++..-++.|.++|||.|......++.. ++..-++||..++...- .--....|+|+ .+|.
T Consensus 33 nw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsG-------RF~vtaLptIYHvkDGe 105 (248)
T KOG0913|consen 33 NWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSG-------RFLVTALPTIYHVKDGE 105 (248)
T ss_pred chhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccce-------eeEEEecceEEEeeccc
Confidence 34555656667889999999999999998754 56677888888775321 11235678885 6776
Q ss_pred E
Q 034205 74 L 74 (101)
Q Consensus 74 ~ 74 (101)
+
T Consensus 106 F 106 (248)
T KOG0913|consen 106 F 106 (248)
T ss_pred c
Confidence 4
No 270
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=92.88 E-value=0.26 Score=32.28 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=20.7
Q ss_pred CcEEE--EecCCChhHHHHHHHH-------HhcCCCcEEEEecC
Q 034205 11 KGVVI--FSKSSCCLCYAVNILF-------QELGVHPMVYEIDQ 45 (101)
Q Consensus 11 ~~vvi--f~~~~Cp~C~~~~~~l-------~~~~i~~~~~~vd~ 45 (101)
..+++ |..+|||.|..-...| .+.|+.+--+.+|.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34544 6667999998755444 34455544454443
No 271
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=92.85 E-value=0.091 Score=36.17 Aligned_cols=74 Identities=15% Similarity=0.323 Sum_probs=57.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHc
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLS 87 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~ 87 (101)
.++|.-|..-++++++-.+.+.|+.|+..+|+-.. .+....-+.+.+....+|++.-+...|-.+..++++.++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~-geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQ-GEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCcc-ccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 78999999999999999999999999999998432 111112344456668899887777788999999988765
No 272
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=92.62 E-value=0.86 Score=28.95 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=51.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhC--C--------------------CCCccEE--
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG--C--------------------NAPVPAV-- 68 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~--g--------------------~~~vP~v-- 68 (101)
|++=|++.-+.-+.+..+|+++|++|+..-++.+-..+.+.++.+... | ..++|+|
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGV 86 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGV 86 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEec
Confidence 344455667788999999999999999999998876666655554331 1 1466765
Q ss_pred EECCeEeechHHHHhHH
Q 034205 69 FISGQLVGSTNEVMSLH 85 (101)
Q Consensus 69 fv~g~~igg~~~~~~~~ 85 (101)
-|..+.++|.|.+..-.
T Consensus 87 Pv~s~~L~GlDSL~SiV 103 (162)
T COG0041 87 PVQSKALSGLDSLLSIV 103 (162)
T ss_pred cCccccccchHHHHHHh
Confidence 45777888888776543
No 273
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.49 E-value=0.84 Score=30.16 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=50.6
Q ss_pred HHHhhhcCCcEEE-EecCCChhHHHH---HHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCe---
Q 034205 3 KVTRLASEKGVVI-FSKSSCCLCYAV---NILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQ--- 73 (101)
Q Consensus 3 ~~~~~~~~~~vvi-f~~~~Cp~C~~~---~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~--- 73 (101)
++....++.+||+ |+.+.---|+-+ ...|....+.-..+.|+..... .|....+...+|.| |.||.
T Consensus 77 f~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P-----Flv~kL~IkVLP~v~l~k~g~~~D 151 (211)
T KOG1672|consen 77 FFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP-----FLVTKLNIKVLPTVALFKNGKTVD 151 (211)
T ss_pred HHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc-----eeeeeeeeeEeeeEEEEEcCEEEE
Confidence 3444445666654 888875556555 4455555666555555543222 23333478889986 78886
Q ss_pred EeechHHHHhH--HHcCCchhhcccCCC
Q 034205 74 LVGSTNEVMSL--HLSGNLIPLLKPYQP 99 (101)
Q Consensus 74 ~igg~~~~~~~--~~~g~L~~~l~~~g~ 99 (101)
++-||+++=.- +....|+..|...|+
T Consensus 152 ~iVGF~dLGnkDdF~te~LE~rL~~S~v 179 (211)
T KOG1672|consen 152 YVVGFTDLGNKDDFTTETLENRLAKSGV 179 (211)
T ss_pred EEeeHhhcCCCCcCcHHHHHHHHhhccc
Confidence 46666654221 112234555555443
No 274
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=92.28 E-value=0.36 Score=30.64 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCCCCccEEEECCeEeechHHHHhH
Q 034205 60 GCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
.|..++|+++|||+.+-|.+.+..+
T Consensus 163 ~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 163 RGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred cCCCcCCeEEECCeeecccccHHHH
Confidence 5889999999999999898876554
No 275
>PRK13190 putative peroxiredoxin; Provisional
Probab=92.13 E-value=0.39 Score=31.46 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=14.2
Q ss_pred cEEE--EecCCChhHHHHHHHHH
Q 034205 12 GVVI--FSKSSCCLCYAVNILFQ 32 (101)
Q Consensus 12 ~vvi--f~~~~Cp~C~~~~~~l~ 32 (101)
.+++ |..+|||.|..-...|.
T Consensus 29 ~vvL~~~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 29 WVLLFSHPADFTPVCTTEFIAFS 51 (202)
T ss_pred EEEEEEEcCCCCCCCHHHHHHHH
Confidence 3544 56789999986554443
No 276
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=92.10 E-value=0.62 Score=28.32 Aligned_cols=48 Identities=25% Similarity=0.465 Sum_probs=30.5
Q ss_pred CChhHH-----------HHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 20 SCCLCY-----------AVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 20 ~Cp~C~-----------~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
+|+.|. .++..|..+|+......+...++ .+... .-+.|.|.|||+.|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~------~~~~~--~~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE------EFARQ--PLESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH------HHhhc--ccCCCeeeECCEeh
Confidence 899996 34445667788765555544332 12221 26789999999976
No 277
>PRK15000 peroxidase; Provisional
Probab=91.51 E-value=0.79 Score=30.03 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=14.3
Q ss_pred CCcEEEEecC--CChhHHHHHHHHH
Q 034205 10 EKGVVIFSKS--SCCLCYAVNILFQ 32 (101)
Q Consensus 10 ~~~vvif~~~--~Cp~C~~~~~~l~ 32 (101)
.+.+++|.-+ |||.|..-..-|.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~ 58 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFD 58 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHH
Confidence 4455554444 7999997555543
No 278
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=91.42 E-value=0.39 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHH
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKA 55 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~ 55 (101)
...+.+|.+..||.|......+..-+-++..+-|++..+...++.-
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~W 154 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQW 154 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHH
Confidence 3468899999999999888888777888888888855554444433
No 279
>PRK13189 peroxiredoxin; Provisional
Probab=91.20 E-value=0.59 Score=31.14 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=19.2
Q ss_pred CcEEE--EecCCChhHHHHHHHH-------HhcCCCcEEEEec
Q 034205 11 KGVVI--FSKSSCCLCYAVNILF-------QELGVHPMVYEID 44 (101)
Q Consensus 11 ~~vvi--f~~~~Cp~C~~~~~~l-------~~~~i~~~~~~vd 44 (101)
..+++ |-.+|||.|..-...| .+.|+..--+.+|
T Consensus 36 k~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D 78 (222)
T PRK13189 36 KWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID 78 (222)
T ss_pred CeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 33544 5677999998644333 3445554444444
No 280
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=90.90 E-value=1.7 Score=26.70 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=25.0
Q ss_pred EEEEec-CCChhHHHHHHHHH-------hcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE
Q 034205 13 VVIFSK-SSCCLCYAVNILFQ-------ELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV 68 (101)
Q Consensus 13 vvif~~-~~Cp~C~~~~~~l~-------~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v 68 (101)
++.|.. .|||.|......|. +.++ ..+-|+.++ ...+++.+++. + .++|.+
T Consensus 34 ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v--~vi~Is~d~-~~~~~~~~~~~-~-~~~~~l 92 (154)
T PRK09437 34 LVYFYPKAMTPGCTVQACGLRDNMDELKKAGV--VVLGISTDK-PEKLSRFAEKE-L-LNFTLL 92 (154)
T ss_pred EEEEECCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCC-HHHHHHHHHHh-C-CCCeEE
Confidence 344443 47999976544333 2344 445554433 24445555443 3 345544
No 281
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=90.71 E-value=1.1 Score=27.71 Aligned_cols=61 Identities=20% Similarity=0.080 Sum_probs=35.8
Q ss_pred EEEEecC---CChhHHHHHHHHHhc----C-CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEeech
Q 034205 13 VVIFSKS---SCCLCYAVNILFQEL----G-VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLVGST 78 (101)
Q Consensus 13 vvif~~~---~Cp~C~~~~~~l~~~----~-i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~igg~ 78 (101)
.++|... .+|-+..+--+|.++ + -+.....||.+.+. .+...+|..++|++ |-||+.+|-.
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-----~LA~~fgV~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-----AIGDRFGVFRFPATLVFTGGNYRGVL 107 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-----HHHHHcCCccCCEEEEEECCEEEEEE
Confidence 4445443 467777666666543 2 22334444443332 35555799999986 6799987654
No 282
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.51 E-value=0.62 Score=31.34 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=53.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCc---EEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEeechHHHHhH---
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHP---MVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLVGSTNEVMSL--- 84 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~---~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~igg~~~~~~~--- 84 (101)
+|..+-++-+-|......+.=+..+| .+..+....-... .. .....+|++ +-+|+.||.|-.+.+-
T Consensus 163 ~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas--~~----F~~n~lP~LliYkgGeLIgNFv~va~qlge 236 (273)
T KOG3171|consen 163 VVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGAS--DR----FSLNVLPTLLIYKGGELIGNFVSVAEQLGE 236 (273)
T ss_pred EEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccch--hh----hcccCCceEEEeeCCchhHHHHHHHHHHhh
Confidence 34456678888988888877666554 3444443322111 11 134568875 6699999999765543
Q ss_pred -HHcCCchhhcccCCCC
Q 034205 85 -HLSGNLIPLLKPYQPF 100 (101)
Q Consensus 85 -~~~g~L~~~l~~~g~~ 100 (101)
+-.|+|.+.|+.-|++
T Consensus 237 dffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 237 DFFAGDLESFLNEYGLL 253 (273)
T ss_pred hhhhhhHHHHHHHcCCC
Confidence 4578999999988875
No 283
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=90.39 E-value=0.77 Score=29.84 Aligned_cols=20 Identities=15% Similarity=-0.031 Sum_probs=13.0
Q ss_pred cEEE-Ee-cCCChhHHHHHHHH
Q 034205 12 GVVI-FS-KSSCCLCYAVNILF 31 (101)
Q Consensus 12 ~vvi-f~-~~~Cp~C~~~~~~l 31 (101)
.+++ |. ..|||.|..-...|
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l 54 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDV 54 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHH
Confidence 4444 45 78999998744444
No 284
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=90.35 E-value=1.6 Score=28.34 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=31.8
Q ss_pred cEEEEecCCChhHHHHHHHHHh----cC-CCcEEEEe--cC----CC-CcHHHHHHHHhhCCCCCccEE---EECCeE
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE----LG-VHPMVYEI--DQ----DP-EGKEMEKALMRMGCNAPVPAV---FISGQL 74 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~----~~-i~~~~~~v--d~----~~-~~~~~~~~l~~~~g~~~vP~v---fv~g~~ 74 (101)
-+++|.++||++|.+.. .|.+ ++ -.+..+-+ ++ .+ ...++.+.+++..| .++|.+ -++|..
T Consensus 28 vLVvf~AS~C~~~~q~~-~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fpv~~k~dvnG~~ 103 (183)
T PRK10606 28 LLIVNVASKCGLTPQYE-QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFPMFSKIEVNGEG 103 (183)
T ss_pred EEEEEEeCCCCCcHHHH-HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCceeEEEEccCCCC
Confidence 45779999999997533 3332 22 12334333 32 12 23445555442334 467865 367763
No 285
>PRK13191 putative peroxiredoxin; Provisional
Probab=90.29 E-value=0.77 Score=30.46 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=21.5
Q ss_pred CCcEEE--EecCCChhHHHHHHHHH-------hcCCCcEEEEecCC
Q 034205 10 EKGVVI--FSKSSCCLCYAVNILFQ-------ELGVHPMVYEIDQD 46 (101)
Q Consensus 10 ~~~vvi--f~~~~Cp~C~~~~~~l~-------~~~i~~~~~~vd~~ 46 (101)
...+++ |-.+|||.|..-...|. +.|+.+--+.+|..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 334444 56779999997555553 34555444555433
No 286
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=90.03 E-value=0.38 Score=30.52 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=23.7
Q ss_pred cEEEEecCCChhHHHHHHHHH----hc-CCCcEEEEec
Q 034205 12 GVVIFSKSSCCLCYAVNILFQ----EL-GVHPMVYEID 44 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~----~~-~i~~~~~~vd 44 (101)
+|++|+...||||-.+...|. +. +++++..-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 488999999999987766664 34 5665555544
No 287
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=89.50 E-value=1.1 Score=28.32 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=21.1
Q ss_pred cEEEEecCC-ChhHHHHHHHHHhcCC---CcEEEEecCC
Q 034205 12 GVVIFSKSS-CCLCYAVNILFQELGV---HPMVYEIDQD 46 (101)
Q Consensus 12 ~vvif~~~~-Cp~C~~~~~~l~~~~i---~~~~~~vd~~ 46 (101)
.|+.|..+| ||.|.+-...|.+..- .+..+-|+.+
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D 85 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISAD 85 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 355577777 9999986666644311 3455555544
No 288
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.10 E-value=0.58 Score=31.55 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=46.7
Q ss_pred HHhhhcCCc----EEEEecCCChhHHHHHHHHHhcCCC-------cEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EE
Q 034205 4 VTRLASEKG----VVIFSKSSCCLCYAVNILFQELGVH-------PMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FI 70 (101)
Q Consensus 4 ~~~~~~~~~----vvif~~~~Cp~C~~~~~~l~~~~i~-------~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv 70 (101)
+.+.+..++ ++-|.+.|.|.|++..+.+.++.++ |-.+||..-++..+- =.+....+.+.+|++ |-
T Consensus 135 ~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~k-fris~s~~srQLPT~ilFq 213 (265)
T KOG0914|consen 135 EDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAK-FRISLSPGSRQLPTYILFQ 213 (265)
T ss_pred HHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHh-eeeccCcccccCCeEEEEc
Confidence 344444444 5568888999999999999887554 457899887775431 112223567888876 55
Q ss_pred CCeEe
Q 034205 71 SGQLV 75 (101)
Q Consensus 71 ~g~~i 75 (101)
+|+-+
T Consensus 214 ~gkE~ 218 (265)
T KOG0914|consen 214 KGKEV 218 (265)
T ss_pred cchhh
Confidence 66543
No 289
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=88.03 E-value=2.2 Score=29.37 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=15.5
Q ss_pred hhhcCCcEEEE--ecCCChhHHHHHHHH
Q 034205 6 RLASEKGVVIF--SKSSCCLCYAVNILF 31 (101)
Q Consensus 6 ~~~~~~~vvif--~~~~Cp~C~~~~~~l 31 (101)
+......+++| -..|||.|..-...|
T Consensus 94 d~~kgk~vVL~FyPa~ftpvCt~El~~l 121 (261)
T PTZ00137 94 DYFKDSYGLLVFYPLDFTFVCPSELLGF 121 (261)
T ss_pred HHcCCCeEEEEEECCCCCCCCHHHHHHH
Confidence 33344456655 357999998744333
No 290
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=87.89 E-value=2.6 Score=26.83 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=52.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhh----------------------CCCCCccEEE--
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM----------------------GCNAPVPAVF-- 69 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~----------------------~g~~~vP~vf-- 69 (101)
++=+.+.=|+++++...|+++|++|+..-...+-....+.++++.. .+..++|+|=
T Consensus 4 imGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP 83 (156)
T TIGR01162 4 IMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVP 83 (156)
T ss_pred EECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEec
Confidence 3445567899999999999999999988888776666666665432 2336777763
Q ss_pred ECCeEeechHHHHhHHH
Q 034205 70 ISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 70 v~g~~igg~~~~~~~~~ 86 (101)
+.....+|.|.+..+.+
T Consensus 84 ~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 84 VPSKALSGLDSLLSIVQ 100 (156)
T ss_pred CCccCCCCHHHHHHHhc
Confidence 34556788888877766
No 291
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=87.49 E-value=0.4 Score=31.41 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.0
Q ss_pred CCcEEEEecCCChhHHHHHHH
Q 034205 10 EKGVVIFSKSSCCLCYAVNIL 30 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~ 30 (101)
...|+.|..-.||+|.+....
T Consensus 38 ~~~VvEffdy~CphC~~~~~~ 58 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEV 58 (207)
T ss_pred CCeEEEEeCCCCccHHHhccc
Confidence 345889999999999987643
No 292
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=86.58 E-value=1.1 Score=26.98 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHhcC---CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCe
Q 034205 20 SCCLCYAVNILFQELG---VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQ 73 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~---i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~ 73 (101)
.||+|..+.-+|...- -..+...|+-.--...+-+.+- ....+.|+++.++.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llG--E~~QslPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLG--EANQSLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhC--hhccCCCEEEeCCC
Confidence 4999999999997653 2223333332222222222221 12689999988653
No 293
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=86.44 E-value=2.1 Score=26.44 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=35.3
Q ss_pred EEecCCChhHHHHHHHHHhcCCC------cEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034205 15 IFSKSSCCLCYAVNILFQELGVH------PMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQLV 75 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l~~~~i~------~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~~i 75 (101)
=|+..|-|-|-++-.+|.+.... .-.+|+|+-++.. +..+....|++ |.+++|+
T Consensus 29 RFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~-------~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 29 RFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFV-------KMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred EecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhh-------hhhcccCCceEEEEEcCceE
Confidence 39999999999999999765321 2456666444332 33455556654 7787765
No 294
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=86.29 E-value=2.6 Score=27.41 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=17.6
Q ss_pred EEEEe-cCCChhHHHHHHHH-------HhcCCCcEEEEecC
Q 034205 13 VVIFS-KSSCCLCYAVNILF-------QELGVHPMVYEIDQ 45 (101)
Q Consensus 13 vvif~-~~~Cp~C~~~~~~l-------~~~~i~~~~~~vd~ 45 (101)
+++|+ ..|||.|.....-| .+.|+.+--+.+|.
T Consensus 40 lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 40 VLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred EEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 34444 35788887644333 33465555555543
No 295
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=86.07 E-value=2.6 Score=26.32 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=12.8
Q ss_pred cCCcEEEEecC--CChhHHHH
Q 034205 9 SEKGVVIFSKS--SCCLCYAV 27 (101)
Q Consensus 9 ~~~~vvif~~~--~Cp~C~~~ 27 (101)
...++++|.-| +||.|..-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchh
Confidence 34566665554 89999865
No 296
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=86.05 E-value=6.3 Score=24.56 Aligned_cols=73 Identities=12% Similarity=0.239 Sum_probs=44.7
Q ss_pred hcCCcEEEEecCCChhHHHHHHHHHhcCCC--cEEEEecCCCCcHHHHHHHHhhCCCC-C--ccEEEE-CCeEeechHHH
Q 034205 8 ASEKGVVIFSKSSCCLCYAVNILFQELGVH--PMVYEIDQDPEGKEMEKALMRMGCNA-P--VPAVFI-SGQLVGSTNEV 81 (101)
Q Consensus 8 ~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~--~~~~~vd~~~~~~~~~~~l~~~~g~~-~--vP~vfv-~g~~igg~~~~ 81 (101)
+++...+|+....||.|....++|.+..-. +...++-..+... +-+.+|.. . --.+++ +|+..-|.|-+
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~-----~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~ 79 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQA-----LLEAAGLDPEDVDSVLLVEAGQLLVGSDAA 79 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhh-----HHhhcCCChhhhheeeEecCCceEeccHHH
Confidence 345667888889999999999999887544 5555554433332 22223321 1 123344 57778888766
Q ss_pred HhHH
Q 034205 82 MSLH 85 (101)
Q Consensus 82 ~~~~ 85 (101)
.+..
T Consensus 80 ~~i~ 83 (137)
T COG3011 80 IRIL 83 (137)
T ss_pred HHHH
Confidence 6543
No 297
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.41 E-value=1.3 Score=29.01 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=16.7
Q ss_pred hCCCCCccEEEECCeEeechH
Q 034205 59 MGCNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 59 ~~g~~~vP~vfv~g~~igg~~ 79 (101)
..|..++|+++|||+++-+..
T Consensus 162 ~~gI~gtPtfiInGky~v~~~ 182 (207)
T PRK10954 162 DLQLRGVPAMFVNGKYMVNNQ 182 (207)
T ss_pred HcCCCCCCEEEECCEEEEccc
Confidence 358899999999999865433
No 298
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=5 Score=26.62 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=18.0
Q ss_pred CCcEEEEecCCChhHHHHHHHHHh
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
...+++|....||||.+...-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 345788999999999766666654
No 299
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=84.18 E-value=1.8 Score=27.38 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.6
Q ss_pred CCCCCccEEEECCe-EeechHHHHhH
Q 034205 60 GCNAPVPAVFISGQ-LVGSTNEVMSL 84 (101)
Q Consensus 60 ~g~~~vP~vfv~g~-~igg~~~~~~~ 84 (101)
.|..++|+++|||+ .+-|.+.+-.+
T Consensus 163 ~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 163 LGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp TTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred cCCcccCEEEECCEEEEECCCCHHHH
Confidence 68899999999999 78888765544
No 300
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=83.33 E-value=1.2 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.354 Sum_probs=15.8
Q ss_pred cEEEEecCCChhHHHH-HHHH
Q 034205 12 GVVIFSKSSCCLCYAV-NILF 31 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~-~~~l 31 (101)
+|.+|+.+-||+|++. +..|
T Consensus 2 ~v~vyyESlCPd~~~fi~~~L 22 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRFITNQL 22 (108)
T ss_pred EEEEEEEecCHhHHHHHHHHH
Confidence 5899999999999864 4433
No 301
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=82.32 E-value=1 Score=28.59 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=17.7
Q ss_pred cEEEEecCCChhHHHHHHHHHh
Q 034205 12 GVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
.|.+|+.+.||+|-.+...|.+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~ 23 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEK 23 (193)
T ss_pred eEEEEECCCCchhhCchHHHHH
Confidence 4789999999999877666653
No 302
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.11 E-value=0.87 Score=30.65 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=18.3
Q ss_pred cEEEEecCCChhHHHHHHHHHhc
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~ 34 (101)
.|.+|+-.-||+|--.++.|++.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHH
Confidence 57889999999998776666554
No 303
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=81.70 E-value=2.8 Score=26.15 Aligned_cols=20 Identities=25% Similarity=0.286 Sum_probs=16.1
Q ss_pred CCCCCccEEEECCeEeechH
Q 034205 60 GCNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~igg~~ 79 (101)
.|..++|+++|||+.+-+..
T Consensus 139 ~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 139 YKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred cCCCCCCeEEECCEEEEChh
Confidence 58899999999999764443
No 304
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=81.05 E-value=9.4 Score=24.09 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=32.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCcc-EEEEC--CeE
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVP-AVFIS--GQL 74 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP-~vfv~--g~~ 74 (101)
+.+++-+....-...+.++++.+++|..+..|.... +.+..+...+| ++++| |+.
T Consensus 93 ~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~-------~~~~~~v~~~P~~~~id~~G~i 150 (173)
T TIGR00385 93 LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGK-------LGLDLGVYGAPETFLVDGNGVI 150 (173)
T ss_pred CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCc-------hHHhcCCeeCCeEEEEcCCceE
Confidence 444443333333556788999999887665554322 22234777899 56674 663
No 305
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=80.92 E-value=6.3 Score=23.18 Aligned_cols=27 Identities=11% Similarity=0.406 Sum_probs=23.4
Q ss_pred CChhHHHH-HHHHHhcCCCcEEEEecCC
Q 034205 20 SCCLCYAV-NILFQELGVHPMVYEIDQD 46 (101)
Q Consensus 20 ~Cp~C~~~-~~~l~~~~i~~~~~~vd~~ 46 (101)
.|-.|..| +.+|.+.+|+.+.+.+...
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 59999765 8899999999999999873
No 306
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=79.76 E-value=3.2 Score=24.01 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=21.0
Q ss_pred HhhhcCCcEEEEecCCChhHHHHHHHHHhcC
Q 034205 5 TRLASEKGVVIFSKSSCCLCYAVNILFQELG 35 (101)
Q Consensus 5 ~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~ 35 (101)
.++-++-.+++|+.+. ++|..++.++++..
T Consensus 15 ~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 15 ERLENPVELVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred HhCCCCEEEEEEeCCC-cchHHHHHHHHHHH
Confidence 3333333456687776 99999999998763
No 307
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=78.84 E-value=7.7 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECC
Q 034205 19 SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g 72 (101)
.+-+|-.+++..|.++|..+..+++...+. +.+...|.+ .=.|+|+|
T Consensus 46 ~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~-~~Ie~~l~~------~d~IyVgG 92 (224)
T COG3340 46 EDDFYVEKVRNALAKLGLEVSELHLSKPPL-AAIENKLMK------ADIIYVGG 92 (224)
T ss_pred chHHHHHHHHHHHHHcCCeeeeeeccCCCH-HHHHHhhhh------ccEEEECC
Confidence 367899999999999999998888876653 334334333 23566665
No 308
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=78.76 E-value=1.8 Score=23.20 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=12.1
Q ss_pred EEECCeEeechHHHH
Q 034205 68 VFISGQLVGSTNEVM 82 (101)
Q Consensus 68 vfv~g~~igg~~~~~ 82 (101)
||+||.++|=.++-.
T Consensus 1 VFlNG~~iG~~~~p~ 15 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPE 15 (63)
T ss_dssp EEETTEEEEEESSHH
T ss_pred CEECCEEEEEEcCHH
Confidence 799999999876533
No 309
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=78.68 E-value=5.6 Score=24.68 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcCCchhhccc
Q 034205 23 LCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKP 96 (101)
Q Consensus 23 ~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g~L~~~l~~ 96 (101)
|-.++++.|.++|+.+..+++.... ..++.+.+.. .-.||+.| |....+....++-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~-~~~~~~~i~~------ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRN-DADILEAIRE------ADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCG-HHHHHHHHHH------SSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCC-hHHHHHHHHh------CCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 3467889999999887777776542 2344445543 34677765 222233344444445555543
No 310
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=78.56 E-value=2.1 Score=27.05 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=20.1
Q ss_pred EEEEecCCChhHHHHHHHHHh----cCCCcEE
Q 034205 13 VVIFSKSSCCLCYAVNILFQE----LGVHPMV 40 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~----~~i~~~~ 40 (101)
|.+|+..-||+|--+...|.+ ++++++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 468999999999887777654 4555443
No 311
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.51 E-value=14 Score=28.86 Aligned_cols=72 Identities=18% Similarity=0.352 Sum_probs=38.0
Q ss_pred HHhhhcCC-cEEE-EecCCChhHHHHHH-HHH------hcCCCcEEEEec--CCCCcHHHH-HHHHhhCCCCCccE-EEE
Q 034205 4 VTRLASEK-GVVI-FSKSSCCLCYAVNI-LFQ------ELGVHPMVYEID--QDPEGKEME-KALMRMGCNAPVPA-VFI 70 (101)
Q Consensus 4 ~~~~~~~~-~vvi-f~~~~Cp~C~~~~~-~l~------~~~i~~~~~~vd--~~~~~~~~~-~~l~~~~g~~~vP~-vfv 70 (101)
+.++-..+ ||.+ .+.+||.+|+-+.. -+. -+|-.|.-|.|| +.|+...+. +..+-++|....|. ||+
T Consensus 36 f~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfL 115 (667)
T COG1331 36 FAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFL 115 (667)
T ss_pred HHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEE
Confidence 44443344 4544 55679999985532 221 123445555555 456655532 23344577878884 343
Q ss_pred --CCeEe
Q 034205 71 --SGQLV 75 (101)
Q Consensus 71 --~g~~i 75 (101)
||+++
T Consensus 116 TPd~kPF 122 (667)
T COG1331 116 TPDGKPF 122 (667)
T ss_pred CCCCcee
Confidence 56643
No 312
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=77.75 E-value=9.8 Score=21.06 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=36.8
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
...+.+.+-+....=...+..+++.+.++..+.++... ...+.+..+...+|++++
T Consensus 33 ~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 33 KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-----NSELLKKYGINGIPTLVL 88 (95)
T ss_dssp TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-----HHHHHHHTT-TSSSEEEE
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-----HHHHHHHCCCCcCCEEEE
Confidence 34565555555577778899999998877766655432 224555678899999875
No 313
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.67 E-value=3.5 Score=27.39 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.6
Q ss_pred CCCCCccEEEECCeEeechHHHHh
Q 034205 60 GCNAPVPAVFISGQLVGSTNEVMS 83 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~igg~~~~~~ 83 (101)
.|....|++|++|..++|..++.+
T Consensus 211 ~gv~gTPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 211 LGVNGTPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred cCCCcCCeEEECCeeecCCCCHHH
Confidence 578999999999998888765443
No 314
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=76.47 E-value=10 Score=23.91 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhh
Q 034205 19 SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM 59 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~ 59 (101)
+.=|++++++..|+++|++|+..-+..+-...++.+.++..
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 36789999999999999999887777777666666666554
No 315
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=75.69 E-value=2 Score=27.53 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=15.9
Q ss_pred EEEEecCCChhHHHHHHHHH
Q 034205 13 VVIFSKSSCCLCYAVNILFQ 32 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~ 32 (101)
|.+|+..-||||--+...|.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 46899999999997666654
No 316
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=75.43 E-value=15 Score=24.24 Aligned_cols=60 Identities=25% Similarity=0.333 Sum_probs=30.5
Q ss_pred cEEEEecCCChh-HHHHHH----HHHhc----CCCcEEEEecCCCCcHHHHHHHHhhCC-CCCccEEEECC
Q 034205 12 GVVIFSKSSCCL-CYAVNI----LFQEL----GVHPMVYEIDQDPEGKEMEKALMRMGC-NAPVPAVFISG 72 (101)
Q Consensus 12 ~vvif~~~~Cp~-C~~~~~----~l~~~----~i~~~~~~vd~~~~~~~~~~~l~~~~g-~~~vP~vfv~g 72 (101)
.++.|+-+.||. |..... +++.+ +.++..+.|.-+|+... .+.++++.. ....+-+.+-|
T Consensus 70 ~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt-p~~lk~Y~~~~~~~~~~~ltg 139 (207)
T COG1999 70 SLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT-PEVLKKYAELNFDPRWIGLTG 139 (207)
T ss_pred EEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC-HHHHHHHhcccCCCCeeeeeC
Confidence 356677788884 764443 34443 34455555555554332 335555543 23333444444
No 317
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=75.28 E-value=4.4 Score=21.39 Aligned_cols=53 Identities=9% Similarity=0.079 Sum_probs=28.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQ 73 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~ 73 (101)
+.+|+...=.-+..++.+|++.||++...+-....... ..|..+.+.|+|...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~~g--------~~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGYAG--------EPGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchhhc--------ccCccCceEEEECHH
Confidence 35677776667889999999999998776655433210 024444588888765
No 318
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=74.68 E-value=13 Score=26.81 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=5.5
Q ss_pred ccEEEECCeEe
Q 034205 65 VPAVFISGQLV 75 (101)
Q Consensus 65 vP~vfv~g~~i 75 (101)
+|.+.+++.+.
T Consensus 344 IP~L~iE~D~~ 354 (377)
T TIGR03190 344 IPTLFLEFDIT 354 (377)
T ss_pred CCEEEEecCCC
Confidence 55555555443
No 319
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=74.51 E-value=10 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.1
Q ss_pred CCCCCccEEEECCeE-eechHHHHhH
Q 034205 60 GCNAPVPAVFISGQL-VGSTNEVMSL 84 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~-igg~~~~~~~ 84 (101)
.|...+|.|++|+++ +.|-.|+..+
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHHH
Confidence 588999999999987 5777766554
No 320
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=73.88 E-value=8 Score=24.66 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=17.6
Q ss_pred CCCCCccEEEECCeE-eechHHHH
Q 034205 60 GCNAPVPAVFISGQL-VGSTNEVM 82 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~-igg~~~~~ 82 (101)
.|...+|+++|||++ +.|..+..
T Consensus 171 ~gv~G~Pt~vv~g~~~~~G~~~~~ 194 (201)
T cd03024 171 LGISGVPFFVFNGKYAVSGAQPPE 194 (201)
T ss_pred CCCCcCCEEEECCeEeecCCCCHH
Confidence 588999999999874 67765443
No 321
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=73.71 E-value=5.2 Score=26.08 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=18.1
Q ss_pred CcEEEEecCCChhHHHHHHHHHh
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
++|.+|+..-||||--+++.|.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~ 23 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCR 23 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHH
Confidence 35789999999999877666643
No 322
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=72.91 E-value=5.4 Score=23.23 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=39.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC------CcHHHHHHHHhhCCCCCccEEEECCe
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP------EGKEMEKALMRMGCNAPVPAVFISGQ 73 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~------~~~~~~~~l~~~~g~~~vP~vfv~g~ 73 (101)
|.+++.++|+-..-++.+.+..+.++..++..... ....+...+.+......-..+|+|+-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 57899999999999999999998776665554322 12224444444321112467788864
No 323
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=72.67 E-value=12 Score=25.46 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHhhhcCCcEEEEecC-----CChhHHHHHHHHHhc------CCCcEEEEecCCCC
Q 034205 4 VTRLASEKGVVIFSKS-----SCCLCYAVNILFQEL------GVHPMVYEIDQDPE 48 (101)
Q Consensus 4 ~~~~~~~~~vvif~~~-----~Cp~C~~~~~~l~~~------~i~~~~~~vd~~~~ 48 (101)
++.+-.+-.|++|..+ .-++=..++.+|+++ ++.++++|-+..++
T Consensus 20 L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~ 75 (271)
T PF09822_consen 20 LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPS 75 (271)
T ss_pred HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChH
Confidence 4444444567778877 466777888899876 56677777655543
No 324
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=70.98 E-value=16 Score=22.24 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=22.9
Q ss_pred CcEEEEecCCChhHH------------HHHHHHHhcCCCcEEEEecC
Q 034205 11 KGVVIFSKSSCCLCY------------AVNILFQELGVHPMVYEIDQ 45 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~------------~~~~~l~~~~i~~~~~~vd~ 45 (101)
..|++.|.-....+. .+..+|++++++|..+.+..
T Consensus 41 ~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 41 FEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred CEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 345555544444444 77888889999987766643
No 325
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=70.81 E-value=19 Score=21.58 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=41.1
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcE-EEEecCCCCcHHHHHHHHhh-CCCCCccEEEECCeEeechHHHHhHHHc
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPM-VYEIDQDPEGKEMEKALMRM-GCNAPVPAVFISGQLVGSTNEVMSLHLS 87 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~-~~~vd~~~~~~~~~~~l~~~-~g~~~vP~vfv~g~~igg~~~~~~~~~~ 87 (101)
..+|++.-+..|++..+++. .++.|...- .++.+..+....+ .+.... ....++|.++|... .-+.+++..+.
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~~~~~-~m~~~~~~~~i~IP~v~Is~~---dG~~L~~~l~~ 108 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSDEYYV-EMIQDDSSRRADIPAAFLLGK---NGYMIRKTLER 108 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCccccce-EecCCCCCCCceEEEEEecHH---HHHHHHHHHHc
Confidence 35688888999999998877 556665533 3333222111100 000110 12347899998764 23445555555
Q ss_pred CCc
Q 034205 88 GNL 90 (101)
Q Consensus 88 g~L 90 (101)
|.+
T Consensus 109 g~~ 111 (118)
T cd02127 109 LGL 111 (118)
T ss_pred CCc
Confidence 543
No 326
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.60 E-value=24 Score=25.18 Aligned_cols=63 Identities=21% Similarity=0.432 Sum_probs=37.7
Q ss_pred hHHHhhhcCCc-----EEEEecC----CChhHHHHHHHHHhc--------------CCCcEEEEecCCCCcHHHHHHHHh
Q 034205 2 DKVTRLASEKG-----VVIFSKS----SCCLCYAVNILFQEL--------------GVHPMVYEIDQDPEGKEMEKALMR 58 (101)
Q Consensus 2 ~~~~~~~~~~~-----vvif~~~----~Cp~C~~~~~~l~~~--------------~i~~~~~~vd~~~~~~~~~~~l~~ 58 (101)
++++.++.+.+ |++|++. .|+-|..+.+-++-. .+=|..+|.++.+. .++.
T Consensus 48 d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~------~Fq~ 121 (331)
T KOG2603|consen 48 DKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ------VFQQ 121 (331)
T ss_pred cchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH------HHHH
Confidence 34555655554 7788874 799999887665321 11144566665432 2222
Q ss_pred hCCCCCccEEEEC
Q 034205 59 MGCNAPVPAVFIS 71 (101)
Q Consensus 59 ~~g~~~vP~vfv~ 71 (101)
. +..++|.+++=
T Consensus 122 l-~ln~~P~l~~f 133 (331)
T KOG2603|consen 122 L-NLNNVPHLVLF 133 (331)
T ss_pred h-cccCCCeEEEe
Confidence 2 67889998763
No 327
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=70.31 E-value=12 Score=27.64 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=32.2
Q ss_pred HHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCcEEEEecC
Q 034205 4 VTRLASEKGVVIFSK-----SSCCLCYAVNILFQELGVHPMVYEIDQ 45 (101)
Q Consensus 4 ~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~i~~~~~~vd~ 45 (101)
+..+.+.+.||+=.+ ++|-||+-++..|...|.+.+.+++-.
T Consensus 210 iaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~it 256 (583)
T KOG2454|consen 210 IAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVIT 256 (583)
T ss_pred HHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheee
Confidence 344556677776443 579999999999999999988777754
No 328
>PRK00766 hypothetical protein; Provisional
Probab=70.28 E-value=10 Score=24.97 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=33.2
Q ss_pred CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechH--HHHhHHH
Q 034205 35 GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTN--EVMSLHL 86 (101)
Q Consensus 35 ~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~--~~~~~~~ 86 (101)
|+-+..+.+|-.+....+.+.+......+.+=.|+++|--+|||+ |+..+++
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNvvD~~~l~~ 95 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVVDIEELYR 95 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEEecHHHHHH
Confidence 344677888877666665555543222356677899999999986 4444443
No 329
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=69.74 E-value=32 Score=24.71 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=53.9
Q ss_pred hhhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEE----------EecCCCCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 6 RLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVY----------EIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 6 ~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~----------~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
++++..-+.||+-+.|..-..+..+.+.+.+||-.. .+...|.....-..+-+..+|+.+=.++-+..-+
T Consensus 58 ~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~Wr~~~~iYd~d~gl 137 (372)
T cd06387 58 SQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKWEKFVYLYDTERGF 137 (372)
T ss_pred HHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcCCCEEEEEecCchhH
Confidence 456667788999999998889999999999997543 2233333222122223347899999999666656
Q ss_pred echHHHHhHHH
Q 034205 76 GSTNEVMSLHL 86 (101)
Q Consensus 76 gg~~~~~~~~~ 86 (101)
+...++.++..
T Consensus 138 ~~Lq~L~~~~~ 148 (372)
T cd06387 138 SILQAIMEAAV 148 (372)
T ss_pred HHHHHHHHhhc
Confidence 66666655543
No 330
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=69.67 E-value=10 Score=23.99 Aligned_cols=29 Identities=10% Similarity=0.333 Sum_probs=24.9
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcCCC
Q 034205 9 SEKGVVIFSKSSCCLCYAVNILFQELGVH 37 (101)
Q Consensus 9 ~~~~vvif~~~~Cp~C~~~~~~l~~~~i~ 37 (101)
+..+|++|-.++|+.+..+...|..+|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 44689999999999999999999999865
No 331
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.37 E-value=19 Score=20.54 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=25.1
Q ss_pred HHhhhcCCcEEEEecCCChh--HHHHHHHHHhcCCCcEEEE
Q 034205 4 VTRLASEKGVVIFSKSSCCL--CYAVNILFQELGVHPMVYE 42 (101)
Q Consensus 4 ~~~~~~~~~vvif~~~~Cp~--C~~~~~~l~~~~i~~~~~~ 42 (101)
+...+....+||+....+.+ +..++..-.+.++|+.+..
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 55666666777666666554 5566777777777755543
No 332
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=69.19 E-value=14 Score=22.97 Aligned_cols=56 Identities=14% Similarity=0.340 Sum_probs=34.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCC------CcEEEEecCCCCcHHHHHHHHhhCCCCCccEE-EECCeEe
Q 034205 14 VIFSKSSCCLCYAVNILFQELGV------HPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV-FISGQLV 75 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i------~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v-fv~g~~i 75 (101)
+=|+..|-|.|.++-.+|.+..- ..-.+|+++-|+...+ -+++ ...-+. |.+++++
T Consensus 25 iRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~----yel~--dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 25 IRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQM----YELY--DPCTVMFFFRNKHM 87 (133)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHH----TTS---SSEEEEEEETTEEE
T ss_pred EEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcc----cccC--CCeEEEEEecCeEE
Confidence 34999999999999999865421 1346788877776542 2222 222233 5588876
No 333
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=68.03 E-value=8.1 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=20.8
Q ss_pred CCCCCccEEEECCeE-eechHHHHhHH
Q 034205 60 GCNAPVPAVFISGQL-VGSTNEVMSLH 85 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~-igg~~~~~~~~ 85 (101)
.|...+|.|++|+++ |.|..|+..+.
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A~ 105 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARAL 105 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHHH
Confidence 578999999999986 68887776543
No 334
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=67.49 E-value=25 Score=26.96 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=49.1
Q ss_pred ecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhh----------------------CCCCCccEEE--ECC
Q 034205 17 SKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM----------------------GCNAPVPAVF--ISG 72 (101)
Q Consensus 17 ~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~----------------------~g~~~vP~vf--v~g 72 (101)
+.+.=|.+.++...|+++|++|+..-.+.+-....+.++++.. .+..+.|+|= +++
T Consensus 419 s~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~ 498 (577)
T PLN02948 419 SDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKT 498 (577)
T ss_pred chhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCC
Confidence 3346789999999999999999977777666655554443322 2336677763 344
Q ss_pred eEeechHHHHhHHHc
Q 034205 73 QLVGSTNEVMSLHLS 87 (101)
Q Consensus 73 ~~igg~~~~~~~~~~ 87 (101)
...+|.|.+..+.+.
T Consensus 499 ~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 499 SHLDGLDSLLSIVQM 513 (577)
T ss_pred CCCCcHHHHHHHhcC
Confidence 467888888777665
No 335
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=67.12 E-value=4.6 Score=27.64 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=15.6
Q ss_pred EEEEecCCChhHHHHHHHH----HhcCC
Q 034205 13 VVIFSKSSCCLCYAVNILF----QELGV 36 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l----~~~~i 36 (101)
|+..+..|||+|...+-.| .+.|-
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcCC
Confidence 3444556899998776554 55553
No 336
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=67.10 E-value=18 Score=19.47 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.8
Q ss_pred EEEECCeEeech
Q 034205 67 AVFISGQLVGST 78 (101)
Q Consensus 67 ~vfv~g~~igg~ 78 (101)
-|++++++||-.
T Consensus 31 EV~~g~EfiGvi 42 (63)
T PF11324_consen 31 EVYIGDEFIGVI 42 (63)
T ss_pred EEEeCCEEEEEE
Confidence 389999999864
No 337
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=66.29 E-value=31 Score=21.91 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=25.5
Q ss_pred cEEEEecCCCh-hHHHHHHHH-------HhcCCCcEEEEecCCCC--c-HHHHHHHHhh
Q 034205 12 GVVIFSKSSCC-LCYAVNILF-------QELGVHPMVYEIDQDPE--G-KEMEKALMRM 59 (101)
Q Consensus 12 ~vvif~~~~Cp-~C~~~~~~l-------~~~~i~~~~~~vd~~~~--~-~~~~~~l~~~ 59 (101)
.++.|+-+.|| -|..+..-| .+.+.++..+-|..+|+ . +.++++.+..
T Consensus 55 ~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~ 113 (174)
T PF02630_consen 55 VLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKF 113 (174)
T ss_dssp EEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCH
T ss_pred EEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhc
Confidence 36668888998 476443333 33345555555555554 2 3355555544
No 338
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.04 E-value=21 Score=21.26 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=33.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKE 51 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~ 51 (101)
+|.+++.++|+-..-++.+.+.++.++..+.+..+.+..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc
Confidence 5889999999999999999999988888888887666554
No 339
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=65.78 E-value=26 Score=20.85 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHhhhcCCc-EEE-EecC----CChhHHH------HHHHHHhcCCCcEEEEecCC-CCcHHHHHHHHhhCCCCCccEEE
Q 034205 3 KVTRLASEKG-VVI-FSKS----SCCLCYA------VNILFQELGVHPMVYEIDQD-PEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 3 ~~~~~~~~~~-vvi-f~~~----~Cp~C~~------~~~~l~~~~i~~~~~~vd~~-~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
.++.+-+..+ +.| +.++ ||.+|+. +.+++++ .|-..-.|.. +++. .+....+..++|.+.
T Consensus 9 Al~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg~----~la~~l~~~~~P~~~ 81 (116)
T cd02991 9 ALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEGY----RVSQALRERTYPFLA 81 (116)
T ss_pred HHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHHH----HHHHHhCCCCCCEEE
Confidence 3444444444 333 4445 6778853 3344443 3333333322 2333 234445778999874
No 340
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=63.77 E-value=6.6 Score=23.21 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=14.3
Q ss_pred CCCCccEEEECCeEeech
Q 034205 61 CNAPVPAVFISGQLVGST 78 (101)
Q Consensus 61 g~~~vP~vfv~g~~igg~ 78 (101)
.-...|.||.||+.||=-
T Consensus 78 kDECTplvF~n~~LvgWG 95 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGWG 95 (102)
T ss_pred CCceEEEEEECCEEEEEc
Confidence 346789999999998743
No 341
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.66 E-value=22 Score=24.03 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHc--CCchhhc
Q 034205 19 SSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLS--GNLIPLL 94 (101)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~--g~L~~~l 94 (101)
+.-..|-.++.+|.-.+.+|.++--+..+ .+ +....+|.+-+|...+.++..+.+..+. ..|..+|
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Nae-------fm---SP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l 99 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAE-------FM---SPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL 99 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCcc-------cc---CCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhh
Confidence 45668999999999999999876544322 22 3334899999999999999988886542 3455555
No 342
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=63.53 E-value=9.5 Score=28.48 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=21.2
Q ss_pred HhhhcCCcEEEEecCCChhHHHHHHHHHhcC
Q 034205 5 TRLASEKGVVIFSKSSCCLCYAVNILFQELG 35 (101)
Q Consensus 5 ~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~ 35 (101)
.++-++-.+++|.. .|++|..++.+|++..
T Consensus 15 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 15 ELLERPIELVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred HhCCCCEEEEEEeC-CCchHHHHHHHHHHHH
Confidence 33333334566766 7999999999998763
No 343
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=63.39 E-value=38 Score=22.00 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=31.9
Q ss_pred EEEEecCCChhH-HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhh-----CCCCCccEEEEC
Q 034205 13 VVIFSKSSCCLC-YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM-----GCNAPVPAVFIS 71 (101)
Q Consensus 13 vvif~~~~Cp~C-~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~-----~g~~~vP~vfv~ 71 (101)
++=++-++-.++ ..+..++.+....+-.+|+..+...+++.+.+... .+.+..|.++|.
T Consensus 36 ~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 36 VINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp EEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred eEeeeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 333444432233 35577778877777777777655544443333322 578999999997
No 344
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=63.33 E-value=23 Score=25.10 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=32.8
Q ss_pred cCCChhHHHHHHHHHhcC---CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHh
Q 034205 18 KSSCCLCYAVNILFQELG---VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMS 83 (101)
Q Consensus 18 ~~~Cp~C~~~~~~l~~~~---i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~ 83 (101)
--+|+.|++++.+|+.+. .++.++-||.+.+. +++...... ...+|.|-+.| .+|.|++-..
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~--L~~a~~~L~-~~~~p~l~v~~-l~gdy~~~l~ 146 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDVSRSE--LQRTLAELP-LGNFSHVRCAG-LLGTYDDGLA 146 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEECCHHH--HHHHHHhhh-hccCCCeEEEE-EEecHHHHHh
Confidence 457999999999987663 23444444443321 222332221 23456666555 4555555444
No 345
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=63.20 E-value=9 Score=22.87 Aligned_cols=14 Identities=36% Similarity=1.032 Sum_probs=7.3
Q ss_pred cEEEEecC---CChhHH
Q 034205 12 GVVIFSKS---SCCLCY 25 (101)
Q Consensus 12 ~vvif~~~---~Cp~C~ 25 (101)
.+++|+.. .|+||.
T Consensus 7 ~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp EEEEEEC--SB--TT-T
T ss_pred EEEEEcCcccccCcCcC
Confidence 57888665 589994
No 346
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=63.19 E-value=22 Score=25.57 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCC--CcHHHHHHHHhhCCCCCccEEE--ECC-eEeechHHHHhH
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP--EGKEMEKALMRMGCNAPVPAVF--ISG-QLVGSTNEVMSL 84 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~--~~~~~~~~l~~~~g~~~vP~vf--v~g-~~igg~~~~~~~ 84 (101)
..+.++|.+..+.+|. .+...-+|+....+.++.+- +...+++.+.+......+|.++ .-| ...|.+|++.++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 3567888888888886 45556667776677777632 3455666766654445577433 334 456777877664
Q ss_pred H
Q 034205 85 H 85 (101)
Q Consensus 85 ~ 85 (101)
.
T Consensus 217 ~ 217 (373)
T PF00282_consen 217 A 217 (373)
T ss_dssp H
T ss_pred h
Confidence 3
No 347
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.64 E-value=3.8 Score=28.54 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=8.3
Q ss_pred cCCChhHHHHH
Q 034205 18 KSSCCLCYAVN 28 (101)
Q Consensus 18 ~~~Cp~C~~~~ 28 (101)
+++||||++-.
T Consensus 270 kqtCPYCKekV 280 (328)
T KOG1734|consen 270 KQTCPYCKEKV 280 (328)
T ss_pred CCCCchHHHHh
Confidence 46899998643
No 348
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=62.08 E-value=24 Score=21.15 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=30.3
Q ss_pred CCcEEEEecCCChhHHHHHHHH---HhcCCCcEEEEecCCCCcHHH
Q 034205 10 EKGVVIFSKSSCCLCYAVNILF---QELGVHPMVYEIDQDPEGKEM 52 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l---~~~~i~~~~~~vd~~~~~~~~ 52 (101)
++.|.+|...+|..-...+.++ ++-|++|..+.+....+...+
T Consensus 2 ~Pai~i~~~~~~~~~~~lrev~aGIEEEGip~~~~~~~~~~d~~~l 47 (112)
T PF02288_consen 2 KPAIGIYVSKTIEGSDVLREVLAGIEEEGIPYRVVRVSDTSDVAFL 47 (112)
T ss_dssp -TTECCCEECTTTCHHHHHHHHHHHHCTT-EEEEEEECSSSSHHHH
T ss_pred CCEEEEEecCCCcchhHHHHHHhHhcccCCCeEEEeecCcccHHHH
Confidence 3557788888888766666665 678999999777776665554
No 349
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=61.79 E-value=9.1 Score=24.48 Aligned_cols=20 Identities=20% Similarity=0.649 Sum_probs=14.5
Q ss_pred EEecCCChhHHHHHHHHHhc
Q 034205 15 IFSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l~~~ 34 (101)
+|+.|.|++|-...+.+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 68999999999887777554
No 350
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=60.55 E-value=59 Score=23.18 Aligned_cols=82 Identities=9% Similarity=0.134 Sum_probs=52.5
Q ss_pred HHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEE-----------------------ecCCCCcHHHHHH---H
Q 034205 3 KVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYE-----------------------IDQDPEGKEMEKA---L 56 (101)
Q Consensus 3 ~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~-----------------------vd~~~~~~~~~~~---l 56 (101)
.+.++++..-+.||+..+++.+..+..+.++.++|+-... +...++ .+.... +
T Consensus 54 ~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~-~~~~~ai~~l 132 (363)
T cd06381 54 EACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPP-VRLNDVMLRL 132 (363)
T ss_pred HHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEecc-HHHHHHHHHH
Confidence 4567777755678999999999999999999988864321 111122 112222 2
Q ss_pred HhhCCCCCccEEEECCeEeechHHHHhHH
Q 034205 57 MRMGCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 57 ~~~~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
.+..|+..+=.++.+.....|.+++.+..
T Consensus 133 v~~~~wkkvavly~~d~g~~~l~~~~~~~ 161 (363)
T cd06381 133 VTEWRWQKFVYFYDNDYDIRGLQEFLDQL 161 (363)
T ss_pred HHhCCCeEEEEEEECCchHHHHHHHHHHH
Confidence 33457888877888776555556665544
No 351
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=60.35 E-value=9.9 Score=22.24 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHhcC---------CCcEEEEecC--CCCcHHHHHHHHhhCCCCCccEEEECCeEeechH
Q 034205 21 CCLCYAVNILFQELG---------VHPMVYEIDQ--DPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 21 Cp~C~~~~~~l~~~~---------i~~~~~~vd~--~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~ 79 (101)
=|.-...+.++...| -.|.....+. .....++.+.|.+...--.-|.|..+++.+-|++
T Consensus 35 p~s~~eL~~~l~~~g~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf~ 104 (105)
T cd03035 35 GLDAATLERWLAKVGWETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVLETGGKVLVGFS 104 (105)
T ss_pred CCCHHHHHHHHHHhChHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecceEEeCCEEEEeeC
Confidence 344455566665554 4455444442 1122444555655555556699998888877775
No 352
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=60.10 E-value=37 Score=22.38 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=34.4
Q ss_pred HHHHHhcCCCcEEEEecCCC-------------CcHH-----------HHHHHHhhCCCCCccE-EEECCeEeechHHHH
Q 034205 28 NILFQELGVHPMVYEIDQDP-------------EGKE-----------MEKALMRMGCNAPVPA-VFISGQLVGSTNEVM 82 (101)
Q Consensus 28 ~~~l~~~~i~~~~~~vd~~~-------------~~~~-----------~~~~l~~~~g~~~vP~-vfv~g~~igg~~~~~ 82 (101)
...|-.+++....+.|+.+. +..+ ++..|.+.-+..++|- .||+++-.-+..++-
T Consensus 53 a~~l~~l~vqiS~V~vt~dFS~~~vYWm~~~~geN~e~e~~L~rs~~~~rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d 132 (207)
T KOG4700|consen 53 AEMLGRLQVQISRVRVTRDFSQVSVYWMCRGDGENSEIEDFLERSKHQIRHRLEESIGIGTVPEIKFVGDKALLMLQEMD 132 (207)
T ss_pred HHHHhhcceeEEEEEeccchhhheeEEEecCCccHHHHHHHHHHHHHHHHHHHHHHhccccCCceEEecchHHHHHHHHH
Confidence 35556677777777665322 1112 4444544456667765 599988666665555
Q ss_pred hHHHc
Q 034205 83 SLHLS 87 (101)
Q Consensus 83 ~~~~~ 87 (101)
++...
T Consensus 133 ~ll~~ 137 (207)
T KOG4700|consen 133 KLLRE 137 (207)
T ss_pred HHHHH
Confidence 54443
No 353
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=60.01 E-value=53 Score=22.43 Aligned_cols=74 Identities=11% Similarity=0.202 Sum_probs=47.6
Q ss_pred hHHHhhhc---CCcEEEEecCCChh-HHH----HHHHHHhcCC-CcEEEEecCCCCcHHHHHHHHhh--CCCCCccEEEE
Q 034205 2 DKVTRLAS---EKGVVIFSKSSCCL-CYA----VNILFQELGV-HPMVYEIDQDPEGKEMEKALMRM--GCNAPVPAVFI 70 (101)
Q Consensus 2 ~~~~~~~~---~~~vvif~~~~Cp~-C~~----~~~~l~~~~i-~~~~~~vd~~~~~~~~~~~l~~~--~g~~~vP~vfv 70 (101)
+.++.++- ...+++|.-.+-.+ ... .-.+|.+.+. +.....+...|....+.+.|++. .+..-.|.+++
T Consensus 125 ~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlv 204 (265)
T COG4822 125 EAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLV 204 (265)
T ss_pred HHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEe
Confidence 34555543 45577776554332 222 2345677777 45677788889888888888764 34566799999
Q ss_pred CCeEe
Q 034205 71 SGQLV 75 (101)
Q Consensus 71 ~g~~i 75 (101)
.|++.
T Consensus 205 AG~Ha 209 (265)
T COG4822 205 AGDHA 209 (265)
T ss_pred echhh
Confidence 99874
No 354
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=59.58 E-value=28 Score=25.09 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=20.4
Q ss_pred cEEEEecCCChhH----HHHHHHHHhcCCCcEEEEecC
Q 034205 12 GVVIFSKSSCCLC----YAVNILFQELGVHPMVYEIDQ 45 (101)
Q Consensus 12 ~vvif~~~~Cp~C----~~~~~~l~~~~i~~~~~~vd~ 45 (101)
.|+.+....|..- ..+++.|++.|+||-.+|++.
T Consensus 324 GVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 324 GVIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred EEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 3555555556542 345566666777776666665
No 355
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=58.03 E-value=38 Score=20.16 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=37.5
Q ss_pred CcEEEEecCCChhH----HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLC----YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C----~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.++.-..-|.. +..++..++.|+.+..+.+..+....++.+.+.+.+...++=-|++
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEE
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEE
Confidence 44555555555544 4445667889999999999888888888888888765555544444
No 356
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=57.61 E-value=14 Score=27.63 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=20.7
Q ss_pred HhhhcCCcEEEEecCCChhHHHHHHHHHhcC
Q 034205 5 TRLASEKGVVIFSKSSCCLCYAVNILFQELG 35 (101)
Q Consensus 5 ~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~ 35 (101)
.++-++-.+++|.. .|++|..++.+|++..
T Consensus 15 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 15 ASLENPVTLVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred HhcCCCEEEEEEeC-CCchhHHHHHHHHHHH
Confidence 33333334556766 7999999999998763
No 357
>PRK08118 topology modulation protein; Reviewed
Probab=57.49 E-value=46 Score=20.94 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=41.3
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecC------CCCcHHHHHHHHhhCCCCCccEEEECCeEeech
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQ------DPEGKEMEKALMRMGCNAPVPAVFISGQLVGST 78 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~------~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~ 78 (101)
|.+|.|++.++++-..-++.+-+.+++++...|--. .....+..+.+...... +..+++|.+-+..
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~---~~wVidG~~~~~~ 72 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKE---DEWIIDGNYGGTM 72 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcC---CCEEEeCCcchHH
Confidence 357999999999999999999999998865444211 11112333333333221 5678888755443
No 358
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=57.41 E-value=15 Score=17.91 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=18.4
Q ss_pred EECCeEeech--HHHHhHHHcCCchh
Q 034205 69 FISGQLVGST--NEVMSLHLSGNLIP 92 (101)
Q Consensus 69 fv~g~~igg~--~~~~~~~~~g~L~~ 92 (101)
..||+..|-+ +++.++.++|++..
T Consensus 5 ~~~g~~~GP~s~~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 5 ARNGQQQGPFSLEELRQLISSGEIDP 30 (45)
T ss_pred eCCCeEECCcCHHHHHHHHHcCCCCC
Confidence 4578888877 57888889998753
No 359
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=57.04 E-value=16 Score=24.21 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=40.9
Q ss_pred cEEEEec--C---CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeE--eechHHHHhH
Q 034205 12 GVVIFSK--S---SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQL--VGSTNEVMSL 84 (101)
Q Consensus 12 ~vvif~~--~---~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~--igg~~~~~~~ 84 (101)
.-.+|.+ . +|++|.....+=.+.+.++....+ .++.+.+++.. ....=+++-+|++ .-+..++.++
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~------~~I~~~i~~~~-~~~~~V~lTGGEP~~~~~l~~Ll~~ 94 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSA------DEILADIKSLG-YKARGVSLTGGEPLLQPNLLELLEL 94 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCH------HHHHHHHHhcC-CCcceEEEeCCcCCCcccHHHHHHH
Confidence 3456666 2 699998765533222333332222 23333444431 1222355778888 3367777776
Q ss_pred HHcCCchhhcccCC
Q 034205 85 HLSGNLIPLLKPYQ 98 (101)
Q Consensus 85 ~~~g~L~~~l~~~g 98 (101)
.+.-.....|+..|
T Consensus 95 l~~~g~~~~lETng 108 (212)
T COG0602 95 LKRLGFRIALETNG 108 (212)
T ss_pred HHhCCceEEecCCC
Confidence 66544445554444
No 360
>PF15616 TerY-C: TerY-C metal binding domain
Probab=56.85 E-value=3.2 Score=25.62 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=10.9
Q ss_pred EEecCCChhHHHHHH
Q 034205 15 IFSKSSCCLCYAVNI 29 (101)
Q Consensus 15 if~~~~Cp~C~~~~~ 29 (101)
+...|+||+|-....
T Consensus 74 L~g~PgCP~CGn~~~ 88 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYA 88 (131)
T ss_pred hcCCCCCCCCcChhc
Confidence 456689999976643
No 361
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=56.78 E-value=70 Score=22.83 Aligned_cols=80 Identities=9% Similarity=-0.023 Sum_probs=53.7
Q ss_pred hhhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEE----------ecCCCCcHH-HHHHHHhhCCCCCccEEEECCeE
Q 034205 6 RLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYE----------IDQDPEGKE-MEKALMRMGCNAPVPAVFISGQL 74 (101)
Q Consensus 6 ~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~----------vd~~~~~~~-~~~~l~~~~g~~~vP~vfv~g~~ 74 (101)
++++..-+.||+-.++..+..+..+.++++||+-... +...|.... +.. +.+..+++++=.++..+.-
T Consensus 58 ~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~-~i~~~~wk~vaiiYd~~~~ 136 (371)
T cd06388 58 SQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLS-LLDHYEWNRFVFLYDTDRG 136 (371)
T ss_pred HHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHH-HHHhcCceEEEEEecCCcc
Confidence 4566667889999999999999999999999864322 222222111 222 2344688999889876765
Q ss_pred eechHHHHhHHH
Q 034205 75 VGSTNEVMSLHL 86 (101)
Q Consensus 75 igg~~~~~~~~~ 86 (101)
++..+.+.+..+
T Consensus 137 ~~~lq~l~~~~~ 148 (371)
T cd06388 137 YSILQAIMEKAG 148 (371)
T ss_pred HHHHHHHHHhhH
Confidence 677777766544
No 362
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.97 E-value=16 Score=20.34 Aligned_cols=21 Identities=5% Similarity=0.028 Sum_probs=17.9
Q ss_pred CChhHHHHHHHHHhcCCCcEE
Q 034205 20 SCCLCYAVNILFQELGVHPMV 40 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~i~~~~ 40 (101)
-=++|+++..+|.+++++|+.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh 34 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEH 34 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEee
Confidence 356899999999999998864
No 363
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=55.96 E-value=26 Score=20.66 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=20.4
Q ss_pred HHHHHHHHhhCCCCCccEEEECCeEeechH
Q 034205 50 KEMEKALMRMGCNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 50 ~~~~~~l~~~~g~~~vP~vfv~g~~igg~~ 79 (101)
.++.+.|.+...--.-|.|..+++.+-|++
T Consensus 77 ~e~i~~l~~~P~LikRPIi~~~~~~~vG~~ 106 (114)
T TIGR00014 77 QELLDAMVAHPILLERPIVVAGDGARIGRP 106 (114)
T ss_pred HHHHHHHHHCcCcccCCeEEECCEEEEcCC
Confidence 334455555555566799999988877775
No 364
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=55.83 E-value=73 Score=22.80 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=33.3
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhh
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM 59 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~ 59 (101)
.++.|.+.+....-.++...|++.++++..+++..++....+.+.+...
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~ 71 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEA 71 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHH
Confidence 5666666554446677788888999998877776666655555555443
No 365
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=55.69 E-value=11 Score=25.29 Aligned_cols=17 Identities=12% Similarity=0.426 Sum_probs=14.5
Q ss_pred CcEEEEecCCChhHHHH
Q 034205 11 KGVVIFSKSSCCLCYAV 27 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~ 27 (101)
-.|++|+-+-||+|.+.
T Consensus 41 v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 41 VNITLYYEALCPDCSKF 57 (220)
T ss_pred eEEEEEEEecCccHHHH
Confidence 36899999999999854
No 366
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=55.19 E-value=25 Score=19.41 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=26.2
Q ss_pred cEEEEecCCChhHHHHHHHH----Hhc-CCC--cEEEEecCCCCcHH
Q 034205 12 GVVIFSKSSCCLCYAVNILF----QEL-GVH--PMVYEIDQDPEGKE 51 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l----~~~-~i~--~~~~~vd~~~~~~~ 51 (101)
...+|....-|-+.++..-+ ++. +-+ .+.+|+.++|...+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe 49 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAE 49 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHh
Confidence 45788888888887665544 443 333 46788887776443
No 367
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=54.91 E-value=9.6 Score=24.95 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=29.8
Q ss_pred CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechH--HHHhHH
Q 034205 36 VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTN--EVMSLH 85 (101)
Q Consensus 36 i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~--~~~~~~ 85 (101)
+-+..+.+|-.+....+.+.+.. ...+.+=.|+++|--+|||+ |+.+++
T Consensus 37 v~~~~itvdG~DaT~~i~~m~~~-~~r~~i~~v~LdGit~agFNiiD~~~l~ 87 (187)
T PF01949_consen 37 VAFGRITVDGMDATEAIIEMVKR-LFRPDIRVVMLDGITFAGFNIIDIERLY 87 (187)
T ss_dssp EEEEEE-TT-S-HHHHHHHHHCC-TTTTTEEEEEESSSEETTTEE--HHHHH
T ss_pred EEEEEEEECCchHHHHHHHHHHh-cccCcceEEEECCEeEEeeEEecHHHHH
Confidence 44567777776666655555443 33456677899999999996 455555
No 368
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=54.72 E-value=36 Score=22.36 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=34.0
Q ss_pred CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechH--HHHhHHH
Q 034205 35 GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTN--EVMSLHL 86 (101)
Q Consensus 35 ~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~--~~~~~~~ 86 (101)
++.|..+++|-.+....+...+... +...+-.|+.+|--+|||+ |+.++++
T Consensus 41 gv~~~~i~vDG~D~T~~i~~~v~~~-~~~~~rvVlLdGIt~aGFNivDi~~l~~ 93 (185)
T COG1628 41 GVAFSLITVDGLDVTDAISDMVNRS-KRRDLRVVLLDGITFAGFNIVDIEALYK 93 (185)
T ss_pred eeEEEEEEecCchHHHHHHHHHHHh-hcccccEEEECCeeeccceEecHHHHHH
Confidence 4557788888776655554444433 4444888899999999986 5555553
No 369
>PRK04195 replication factor C large subunit; Provisional
Probab=54.50 E-value=88 Score=23.29 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEec
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEID 44 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd 44 (101)
...+.+|+.++|+-...++.+.++++.++.+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 35688999999999999999999998766555544
No 370
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.00 E-value=78 Score=22.56 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=43.7
Q ss_pred cEEEEecCC-----ChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC-CeEeechHHHHhHH
Q 034205 12 GVVIFSKSS-----CCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS-GQLVGSTNEVMSLH 85 (101)
Q Consensus 12 ~vvif~~~~-----Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~-g~~igg~~~~~~~~ 85 (101)
.+.+|+.++ ||.|-.+.-++.=.+ ....+++..++.. ++...+|.+..+ |..++|++++....
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~-~~l~v~~ssN~~~----------s~sg~LP~l~~~ng~~va~~~~iv~~L 71 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAG-APLKVVVSSNPWR----------SPSGKLPYLITDNGTKVAGPVKIVQFL 71 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhC-CCceeEeecCCCC----------CCCCCCCeEEecCCceeccHHHHHHHH
Confidence 455666654 999999988776655 3334555544432 345569998765 59999999887765
Q ss_pred Hc
Q 034205 86 LS 87 (101)
Q Consensus 86 ~~ 87 (101)
+.
T Consensus 72 ~k 73 (313)
T KOG3028|consen 72 KK 73 (313)
T ss_pred HH
Confidence 43
No 371
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=53.95 E-value=23 Score=19.19 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.2
Q ss_pred CCCccEEEECCeEeech
Q 034205 62 NAPVPAVFISGQLVGST 78 (101)
Q Consensus 62 ~~~vP~vfv~g~~igg~ 78 (101)
-..-|.+.|||+.++..
T Consensus 44 C~~gP~v~V~~~~~~~~ 60 (72)
T cd03082 44 CERAPAALVGQRPVDGA 60 (72)
T ss_pred cCCCCeEEECCEEeCCc
Confidence 46679999999988766
No 372
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=53.85 E-value=59 Score=21.13 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCcEEEEecC---CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECC
Q 034205 10 EKGVVIFSKS---SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 10 ~~~vvif~~~---~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g 72 (101)
..+|.+.... .+.++......++++|.....+.+....+..++.+.|. ..-.||+.|
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~------~ad~I~~~G 88 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLL------EADGIFVGG 88 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh------hCCEEEEcC
Confidence 3455555443 36788999999999999876666543344444444443 345777777
No 373
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=53.63 E-value=49 Score=22.30 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=33.5
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCcE---EEEecCCCCcHHHHHHHHhhCCCCCccEEEEC
Q 034205 14 VIFSKSSCCLCYAVNILFQELGVHPM---VYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS 71 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~~~~i~~~---~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~ 71 (101)
+=.++.+-|.|.-....|++++..|. ++.+-...... .+.-..+|++||=
T Consensus 116 vhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIp--------NYPe~nlPTl~VY 168 (240)
T KOG3170|consen 116 VHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIP--------NYPESNLPTLLVY 168 (240)
T ss_pred EEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccC--------CCcccCCCeEEEe
Confidence 33667789999999999999988763 44443222111 1345678999874
No 374
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=53.42 E-value=70 Score=21.84 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=39.3
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCe
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQ 73 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~ 73 (101)
.+++|+.++|+-..-++.+.++.+.++.............+...+... ..-..+|||.-
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~vl~iDEi 90 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL---EEGDVLFIDEI 90 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhc---ccCCEEEEehH
Confidence 589999999999999999999988876555443222333333343332 23457888874
No 375
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=52.69 E-value=64 Score=21.15 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHhc-CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcCCchhhccc
Q 034205 21 CCLCYAVNILFQEL-GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKP 96 (101)
Q Consensus 21 Cp~C~~~~~~l~~~-~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g~L~~~l~~ 96 (101)
=.+...+++.|.++ |.+...+++...++ ..+.+.. .=.||+.| |....+.+..++-.|.+.|++
T Consensus 45 ~~~~~~~~~a~~~l~G~~~~~~~~~~~~~---~~~~l~~------ad~I~l~G---G~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 45 DEYTARFYAAFESLRGVEVSHLHLFDTED---PLDALLE------ADVIYVGG---GNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred HHHHHHHHHHHhhccCcEEEEEeccCccc---HHHHHhc------CCEEEECC---chHHHHHHHHHHcCHHHHHHH
Confidence 35678888999999 88776666543222 2223432 34788888 666666665555566666654
No 376
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=52.20 E-value=6.4 Score=21.13 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCCCCccEEEECCeEeechHHHHhHH-HcCCchhhccc
Q 034205 60 GCNAPVPAVFISGQLVGSTNEVMSLH-LSGNLIPLLKP 96 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~igg~~~~~~~~-~~g~L~~~l~~ 96 (101)
.|...+|.| |||.|=+..-. ++-+|++||+.
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~ 44 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQ 44 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHHH
Confidence 456667754 67766443322 34578888754
No 377
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=51.74 E-value=83 Score=22.22 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=32.4
Q ss_pred CcEEEEecCCC--hhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhh
Q 034205 11 KGVVIFSKSSC--CLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM 59 (101)
Q Consensus 11 ~~vvif~~~~C--p~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~ 59 (101)
.++++.+.+.. +...++...|.+.++.+.+.++..++....+.+..+..
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~ 73 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIA 73 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHH
Confidence 45555554322 67778888899889887766777777766665555443
No 378
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=51.59 E-value=31 Score=23.22 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=19.3
Q ss_pred EEecCCChhHHHHHHHHHhcCCCc
Q 034205 15 IFSKSSCCLCYAVNILFQELGVHP 38 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l~~~~i~~ 38 (101)
++-+..||.++.+|..|.+.++..
T Consensus 150 i~~t~~~pla~~~R~~Lrk~~~~~ 173 (231)
T cd00755 150 ISKTSGDPLARKVRKRLRKRGIFF 173 (231)
T ss_pred EeccccCcHHHHHHHHHHHcCCCC
Confidence 355567999999999999988863
No 379
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=50.39 E-value=14 Score=21.81 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=14.5
Q ss_pred CCCCccEEEECCeEeechH
Q 034205 61 CNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 61 g~~~vP~vfv~g~~igg~~ 79 (101)
+....=++||||.++|.+.
T Consensus 60 g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp STTEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCEEeeeec
Confidence 4445568999999999864
No 380
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=49.40 E-value=23 Score=23.60 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCcEEEEecCCCC--cHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhH
Q 034205 26 AVNILFQELGVHPMVYEIDQDPE--GKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSL 84 (101)
Q Consensus 26 ~~~~~l~~~~i~~~~~~vd~~~~--~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~ 84 (101)
.+..+|++..|+...+| ..|. ..-+++.|+-.-+--+-|.+++-+++-||.|--.++
T Consensus 130 ~a~~WL~~VEI~~~RiD--D~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQA 188 (258)
T COG4107 130 EAQDWLEEVEIDLDRID--DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188 (258)
T ss_pred HHHHHHHhcccCccccc--CcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHH
Confidence 55667777666544333 3232 222666666555567889998888999999864443
No 381
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=48.57 E-value=30 Score=25.50 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=8.8
Q ss_pred HHHHHhcCCCcEEEEecC
Q 034205 28 NILFQELGVHPMVYEIDQ 45 (101)
Q Consensus 28 ~~~l~~~~i~~~~~~vd~ 45 (101)
++.+.+.|+||-.+|.|.
T Consensus 384 k~~l~~~GIP~L~ietD~ 401 (430)
T TIGR03191 384 RLAIAKAGIPIMTFEGNM 401 (430)
T ss_pred HHHHHHcCCCEEEEECCC
Confidence 344444555555555443
No 382
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=48.06 E-value=96 Score=21.87 Aligned_cols=20 Identities=40% Similarity=0.295 Sum_probs=14.2
Q ss_pred echHHHHhHHHcCCchhhcc
Q 034205 76 GSTNEVMSLHLSGNLIPLLK 95 (101)
Q Consensus 76 gg~~~~~~~~~~g~L~~~l~ 95 (101)
|.-+....+.++|-|+.+++
T Consensus 115 GhG~i~~aL~~sG~L~~l~~ 134 (300)
T cd00897 115 GHGDIFESLYNSGLLDTLLA 134 (300)
T ss_pred CCchHHHHHHHCCcHHHHHh
Confidence 44456677888888887664
No 383
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=47.93 E-value=1e+02 Score=23.07 Aligned_cols=71 Identities=4% Similarity=0.025 Sum_probs=48.1
Q ss_pred HHHhhhcCC---cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhh---CCCCCccEEEECCeE
Q 034205 3 KVTRLASEK---GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM---GCNAPVPAVFISGQL 74 (101)
Q Consensus 3 ~~~~~~~~~---~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~---~g~~~vP~vfv~g~~ 74 (101)
.+++++... ..++|+-|+|+-..-++-+-...+..|..++-..+ .-.++++.+.+. .+...-+.+|||..|
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvkdlr~i~e~a~~~~~~gr~tiLflDEIH 114 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVKDLREIIEEARKNRLLGRRTILFLDEIH 114 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHHHHHHHHHHHHHHHhcCCceEEEEehhh
Confidence 356666654 47889999999988888888888888877665433 334455555443 333445789998764
No 384
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=47.52 E-value=18 Score=21.52 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHhhhcC-CcEEEEecCC---ChhHHHHHHHHHhcC----CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE--EECCe
Q 034205 4 VTRLASE-KGVVIFSKSS---CCLCYAVNILFQELG----VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV--FISGQ 73 (101)
Q Consensus 4 ~~~~~~~-~~vvif~~~~---Cp~C~~~~~~l~~~~----i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v--fv~g~ 73 (101)
+...+.. ...++|.... +|-+..+--+|-++- -.+..--+. .+..+.|....|....|.+ |-+|+
T Consensus 19 ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~-----~~~e~~L~~r~gv~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 19 LDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA-----RAAERALAARFGVRRWPALVFFRDGR 93 (107)
T ss_dssp HHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE-----HHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred HHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC-----chhHHHHHHHhCCccCCeEEEEECCE
Confidence 3444443 3466666654 455555555665542 223333333 1223366666789999986 56999
Q ss_pred EeechHHHHh
Q 034205 74 LVGSTNEVMS 83 (101)
Q Consensus 74 ~igg~~~~~~ 83 (101)
++|....++.
T Consensus 94 ~lG~i~gi~d 103 (107)
T PF07449_consen 94 YLGAIEGIRD 103 (107)
T ss_dssp EEEEEESSST
T ss_pred EEEEecCeec
Confidence 9997765443
No 385
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=46.31 E-value=5.8 Score=19.68 Aligned_cols=6 Identities=33% Similarity=1.071 Sum_probs=4.0
Q ss_pred ChhHHH
Q 034205 21 CCLCYA 26 (101)
Q Consensus 21 Cp~C~~ 26 (101)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 777754
No 386
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=46.13 E-value=85 Score=20.69 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=33.9
Q ss_pred CcEEEEecCC---ChhHHHHHHHHHhcCCC-cEEEEecCC--CCcHHHHHHHHhhCCCCCccEEEECC
Q 034205 11 KGVVIFSKSS---CCLCYAVNILFQELGVH-PMVYEIDQD--PEGKEMEKALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 11 ~~vvif~~~~---Cp~C~~~~~~l~~~~i~-~~~~~vd~~--~~~~~~~~~l~~~~g~~~vP~vfv~g 72 (101)
.+|++..... +.+|.+....|.++|.. ...+.++.. .+..++.+.+.. ...||+.|
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~------ad~I~~~G 91 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRD------ADGIFFTG 91 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHh------CCEEEEeC
Confidence 4565554443 78899999999999985 455666532 233333344433 44666655
No 387
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=46.05 E-value=20 Score=21.25 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=13.0
Q ss_pred EEEecCCChhHHHHHHHHH
Q 034205 14 VIFSKSSCCLCYAVNILFQ 32 (101)
Q Consensus 14 vif~~~~Cp~C~~~~~~l~ 32 (101)
..--.+.||.|.+-+.-|.
T Consensus 27 k~H~~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 27 KQHNSSQCPSCNKKRAELA 45 (104)
T ss_pred cccCcccChHHHHHHHHHH
Confidence 3444568999998766554
No 388
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=45.72 E-value=22 Score=17.75 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=11.9
Q ss_pred CCccEEEECCeEeec
Q 034205 63 APVPAVFISGQLVGS 77 (101)
Q Consensus 63 ~~vP~vfv~g~~igg 77 (101)
..++.|||||+.+-.
T Consensus 18 ~GI~~V~VNG~~vv~ 32 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVE 32 (48)
T ss_dssp BSEEEEEETTEEEEC
T ss_pred CCEEEEEECCEEEEE
Confidence 458999999997644
No 389
>PRK10670 hypothetical protein; Provisional
Probab=45.41 E-value=50 Score=20.75 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCcEEEEecCCC
Q 034205 26 AVNILFQELGVHPMVYEIDQDP 47 (101)
Q Consensus 26 ~~~~~l~~~~i~~~~~~vd~~~ 47 (101)
.+.++|++.+++|+..+++.++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~ 24 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDP 24 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCC
Confidence 4778999999999997776554
No 390
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=45.30 E-value=97 Score=21.13 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=47.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeech---HHHHhHHHcC
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGST---NEVMSLHLSG 88 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~---~~~~~~~~~g 88 (101)
.+.+|+-|+|+-..-|.-+-++.+.++....-..-+...++...+... ..-.++|||..|-=.- +-+..+.++|
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l---~~~~ILFIDEIHRlnk~~qe~LlpamEd~ 128 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL---KEGDILFIDEIHRLNKAQQEILLPAMEDG 128 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT-----TT-EEEECTCCC--HHHHHHHHHHHHCS
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc---CCCcEEEEechhhccHHHHHHHHHHhccC
Confidence 488899999999999998899999998766543334445555555433 3345899998763221 2344455666
Q ss_pred Cchh
Q 034205 89 NLIP 92 (101)
Q Consensus 89 ~L~~ 92 (101)
.+.-
T Consensus 129 ~idi 132 (233)
T PF05496_consen 129 KIDI 132 (233)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6643
No 391
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=45.11 E-value=65 Score=19.05 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=37.5
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHHcC
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSG 88 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~~g 88 (101)
..+|++..+..|++..+++. ..+.|...-.+- +..+... ..-.+.......++|.++|... .-+.++++.+.|
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~-A~~aGA~avIi~-n~~~~~~-~~~~~~~~~~~~~iP~~~Is~~---~G~~l~~~l~~g 115 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKV-AAARGAVAVIVV-NNSDGGG-TAGTLGAPNIDLKVPVGVITKA---AGAALRRRLGAG 115 (122)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEE-eCCCCcc-ccccccCCCCCCeeeEEEEcHH---HHHHHHHHHcCC
Confidence 46788888999999888765 555565533222 2211100 0001111012346899998753 223444444443
No 392
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=45.06 E-value=62 Score=23.02 Aligned_cols=75 Identities=16% Similarity=0.434 Sum_probs=43.1
Q ss_pred cEEEEecC---CChhHH----------------HHHHHHHhcCCCcE---EEEecCCCCc--HHHHHHHHhhCCCCCccE
Q 034205 12 GVVIFSKS---SCCLCY----------------AVNILFQELGVHPM---VYEIDQDPEG--KEMEKALMRMGCNAPVPA 67 (101)
Q Consensus 12 ~vvif~~~---~Cp~C~----------------~~~~~l~~~~i~~~---~~~vd~~~~~--~~~~~~l~~~~g~~~vP~ 67 (101)
.|.+.+.+ +|-||. .....+.++|+.|. .+|-|.-++. ..+.+.++++ ...-|.
T Consensus 113 TIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~i--K~k~p~ 190 (360)
T KOG2672|consen 113 TIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKI--KEKAPE 190 (360)
T ss_pred EEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHH--HhhCcc
Confidence 45555554 688884 56677889999984 3455544543 2244444333 123466
Q ss_pred EEEC---CeEeechHHHHhHHHcC
Q 034205 68 VFIS---GQLVGSTNEVMSLHLSG 88 (101)
Q Consensus 68 vfv~---g~~igg~~~~~~~~~~g 88 (101)
++|. ..|-|..+-+..+.++|
T Consensus 191 ilvE~L~pDF~Gd~~~Ve~va~SG 214 (360)
T KOG2672|consen 191 ILVECLTPDFRGDLKAVEKVAKSG 214 (360)
T ss_pred cchhhcCccccCchHHHHHHHhcC
Confidence 6664 45666666555555554
No 393
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=44.92 E-value=27 Score=21.21 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCCccEEEECCeEeechHH
Q 034205 50 KEMEKALMRMGCNAPVPAVFISGQLVGSTNE 80 (101)
Q Consensus 50 ~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~ 80 (101)
.++.+.+.+...--.-|.|+.+++.+-|+++
T Consensus 77 ~e~i~ll~~~p~LikRPIi~~~~~~~vG~~~ 107 (131)
T PRK01655 77 QDLIKLISDNPGLLRRPIIIDEKRLQVGYNE 107 (131)
T ss_pred HHHHHHHHhCcceEeCCEEEECCEEEecCCH
Confidence 3444555554445566999999998888864
No 394
>PHA00729 NTP-binding motif containing protein
Probab=44.71 E-value=77 Score=21.41 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=20.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELG 35 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~ 35 (101)
.+++++.|+++=.+-+..+..+.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999998888887764
No 395
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=44.31 E-value=77 Score=19.78 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=38.9
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhC--CCCCccEEEECCeEeechHHHHhHHHc
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMG--CNAPVPAVFISGQLVGSTNEVMSLHLS 87 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~--g~~~vP~vfv~g~~igg~~~~~~~~~~ 87 (101)
..+|++.-+..|.+..+++..-+ .|...-.+ ++..++. ....+...+ ...++|.++|... ..+.+....++
T Consensus 67 ~g~IvLV~RG~CtF~~Kv~nAq~-aGA~avII-~n~~~~~--~~~m~~~~~~~~~v~IP~v~Is~~---dg~~L~~~l~~ 139 (153)
T cd02123 67 GSFIVLIRRGNCSFETKVRNAQR-AGYKAAIV-YNDESND--LISMSGNDQEIKGIDIPSVFVGKS---TGEILKKYASY 139 (153)
T ss_pred CCeEEEEECCCCCHHHHHHHHHH-CCCCEEEE-EECCCCc--ceeccCCCCCCcCCEEEEEEeeHH---HHHHHHHHHhc
Confidence 45788899999999999888554 55543222 2221111 111111111 1347999999764 22344444444
Q ss_pred C
Q 034205 88 G 88 (101)
Q Consensus 88 g 88 (101)
+
T Consensus 140 ~ 140 (153)
T cd02123 140 E 140 (153)
T ss_pred C
Confidence 4
No 396
>CHL00195 ycf46 Ycf46; Provisional
Probab=44.08 E-value=91 Score=23.55 Aligned_cols=34 Identities=3% Similarity=0.180 Sum_probs=30.1
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEec
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEID 44 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd 44 (101)
..|.+|+-|+|+-..-++.+-.+.+.++..++..
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~ 293 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG 293 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH
Confidence 4599999999999999999999999998777764
No 397
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=43.68 E-value=1.2e+02 Score=21.66 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=51.2
Q ss_pred hhhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEE----------EecCCCCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 6 RLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVY----------EIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 6 ~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~----------~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
++++..-+.||+-..+.--..+..+.+++.+|+-.. -|...|+....-..+-+..+|+.+=.|+.++.-.
T Consensus 51 ~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI~~~~W~~v~iIYd~d~g~ 130 (364)
T cd06390 51 SQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISVIEHYKWQKFVYIYDADRGL 130 (364)
T ss_pred HHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChhHHHHHHHHHHHcCCcEEEEEEeCCccH
Confidence 456666678899888887788888888888886432 2223333222112223346899999999777556
Q ss_pred echHHHHhHHH
Q 034205 76 GSTNEVMSLHL 86 (101)
Q Consensus 76 gg~~~~~~~~~ 86 (101)
++.+.+.+...
T Consensus 131 ~~lq~l~~~~~ 141 (364)
T cd06390 131 SVLQKVLDTAA 141 (364)
T ss_pred HHHHHHHHhhh
Confidence 66666655443
No 398
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair]
Probab=43.43 E-value=1.1e+02 Score=21.60 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 22 CLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 22 p~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
-||+....++...+.....+-||+.........++.+......-|..|.
T Consensus 171 lH~~ai~~ll~~~~~~~~~ivIDqFa~~~~~~~yl~k~~~~~~~p~~f~ 219 (297)
T COG1039 171 LHNQAIQNLLPQKGAQPEFIVIDQFASSENYKNYLQKETNKFSEPVLFL 219 (297)
T ss_pred HHHHHHHHHHHhccCCCeEEEeccccchhHHHHHHHhhccCCCCceeee
Confidence 3677777777777888899999988777666678877766777888875
No 399
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=42.07 E-value=1.3e+02 Score=21.65 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=33.0
Q ss_pred CcEEEEecC----CChhHHHHHHHHHhcCCCcEEEE-ecCCCCcHHHHHHHHhh
Q 034205 11 KGVVIFSKS----SCCLCYAVNILFQELGVHPMVYE-IDQDPEGKEMEKALMRM 59 (101)
Q Consensus 11 ~~vvif~~~----~Cp~C~~~~~~l~~~~i~~~~~~-vd~~~~~~~~~~~l~~~ 59 (101)
.++.+.+.+ .++...++...|++.++++..++ +..++....+.+.....
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~ 80 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLG 80 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 456665544 26778899999999999876664 66666666555554443
No 400
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=41.92 E-value=42 Score=23.03 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=47.8
Q ss_pred hcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEE--------EecCCCCcHHHHHHHHhhCCCCCccE-----EEECCeE
Q 034205 8 ASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVY--------EIDQDPEGKEMEKALMRMGCNAPVPA-----VFISGQL 74 (101)
Q Consensus 8 ~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~--------~vd~~~~~~~~~~~l~~~~g~~~vP~-----vfv~g~~ 74 (101)
+...++.+|+.-.=..-..+...|.+.||+|+.. -|+.. +..+.+..|... |.+.-.. +|-.+.+
T Consensus 16 l~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~-~~~~Ar~~La~~-GLP~~g~~~~~~lFd~~~l 93 (249)
T PRK15348 16 LTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQS-QFINAVELLRLN-GYPHRQFTTADKMFPANQL 93 (249)
T ss_pred HhcCChHHHcCCCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHH-HHHHHHHHHHHc-CCCCCCCccHHHhCCcccc
Confidence 4455667777666666778889999999999652 22111 122233444443 4332221 4433444
Q ss_pred eechHHHHh---HHHcCCchhhccc
Q 034205 75 VGSTNEVMS---LHLSGNLIPLLKP 96 (101)
Q Consensus 75 igg~~~~~~---~~~~g~L~~~l~~ 96 (101)
.-+..+..+ ...+|+|...|+.
T Consensus 94 ~~t~te~~qki~y~regELarTI~~ 118 (249)
T PRK15348 94 VVSPQEEQQKINFLKEQRIEGMLSQ 118 (249)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHh
Confidence 333333333 3458899888855
No 401
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=41.59 E-value=1.3e+02 Score=21.56 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=33.9
Q ss_pred CcEEEEecC----CChhHHHHHHHHHhcCCCcEEE-EecCCCCcHHHHHHHHh
Q 034205 11 KGVVIFSKS----SCCLCYAVNILFQELGVHPMVY-EIDQDPEGKEMEKALMR 58 (101)
Q Consensus 11 ~~vvif~~~----~Cp~C~~~~~~l~~~~i~~~~~-~vd~~~~~~~~~~~l~~ 58 (101)
.++.|.+.+ ..+...+++..|++.++++..+ ++..++....+.+....
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~ 78 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAAL 78 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHH
Confidence 456666643 4678889999999999988655 56667777666555443
No 402
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=41.35 E-value=17 Score=21.02 Aligned_cols=27 Identities=11% Similarity=-0.154 Sum_probs=18.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCc
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHP 38 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~ 38 (101)
++..|..|...+-..+.+++.+.|.+|
T Consensus 96 ~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 96 PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 666777777777777788888777654
No 403
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.32 E-value=1.2e+02 Score=21.19 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=41.5
Q ss_pred CcEEEEecCCChhHH----HHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLCY----AVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~----~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+++.+.....-|... ...+..++.|+.++.+++..+....++.+.+.+.+....+=-|++
T Consensus 32 P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIiv 95 (282)
T PRK14180 32 PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILV 95 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 445555555555444 455567888999999999988777778888888866555544444
No 404
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=40.88 E-value=71 Score=19.54 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCcHH
Q 034205 25 YAVNILFQELGVHPMVYEIDQDPEGKE 51 (101)
Q Consensus 25 ~~~~~~l~~~~i~~~~~~vd~~~~~~~ 51 (101)
.++.++|++.+++|+.++........+
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~ 28 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEE 28 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHH
Confidence 467889999999999988765444433
No 405
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=40.76 E-value=25 Score=20.76 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=14.2
Q ss_pred CCCCccEEEECCeEeech
Q 034205 61 CNAPVPAVFISGQLVGST 78 (101)
Q Consensus 61 g~~~vP~vfv~g~~igg~ 78 (101)
|...-|.|+|||+.+|..
T Consensus 38 g~~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 38 GSAVKPDVYVDGELIGEL 55 (117)
T ss_pred CccccceEEECCEEEEEe
Confidence 335668999999999864
No 406
>PRK02935 hypothetical protein; Provisional
Probab=40.70 E-value=8.8 Score=22.85 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=13.5
Q ss_pred CChhHHHHHHHHHhcC
Q 034205 20 SCCLCYAVNILFQELG 35 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~ 35 (101)
+||.|++...+|-+..
T Consensus 72 ~CP~C~K~TKmLGrvD 87 (110)
T PRK02935 72 ICPSCEKPTKMLGRVD 87 (110)
T ss_pred ECCCCCchhhhcccee
Confidence 7999999999987643
No 407
>PTZ00494 tuzin-like protein; Provisional
Probab=40.67 E-value=1e+02 Score=23.77 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCcEEEEecC-CChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 10 EKGVVIFSKS-SCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 10 ~~~vvif~~~-~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
-+.|++|+.. +|+-|.-.+....+.+.+-.++||-..++.- +..++.. | ||.+-+-|.++.
T Consensus 394 HPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtL--rsVVKAL-g---V~nve~CGDlLd 455 (664)
T PTZ00494 394 HPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTL--RSVVRAL-G---VSNVEVCGDLLG 455 (664)
T ss_pred CCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchH--HHHHHHh-C---CCChhhhccHHH
Confidence 3468887765 8999999999999999999999998776642 2233322 3 777777666543
No 408
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=40.61 E-value=63 Score=17.63 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=19.1
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcCCC
Q 034205 9 SEKGVVIFSKSSCCLCYAVNILFQELGVH 37 (101)
Q Consensus 9 ~~~~vvif~~~~Cp~C~~~~~~l~~~~i~ 37 (101)
...+|++|.. .+..+..+...|.+.|.+
T Consensus 55 ~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 3456777766 566677777777777754
No 409
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.32 E-value=1.3e+02 Score=21.12 Aligned_cols=60 Identities=8% Similarity=0.126 Sum_probs=40.9
Q ss_pred CcEEEEecCCChh----HHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCL----CYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~----C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.+.....-|. -+...+..++.|+.++.+.++.+....++.+.+.+.+....+=-|++
T Consensus 33 p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlv 96 (285)
T PRK14189 33 PGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILV 96 (285)
T ss_pred CeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEE
Confidence 3455555554454 44556667889999999999988777788888888866555433333
No 410
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=40.11 E-value=1.3e+02 Score=21.29 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=50.4
Q ss_pred hhhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEE----------ecCCCCcH-HHHHHHHhhCCCCCccEEEECCeE
Q 034205 6 RLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYE----------IDQDPEGK-EMEKALMRMGCNAPVPAVFISGQL 74 (101)
Q Consensus 6 ~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~----------vd~~~~~~-~~~~~l~~~~g~~~vP~vfv~g~~ 74 (101)
++++..-+.||+-.++..+..+..+.+++++|+-... +...|... .+.+. -+..+|+++=.++-+..-
T Consensus 52 ~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~-i~~~~wk~vailYdsd~g 130 (370)
T cd06389 52 SQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSL-IEYYQWDKFAYLYDSDRG 130 (370)
T ss_pred HHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHH-HHhcCCcEEEEEecCchH
Confidence 4566667789999999999999999999999875422 12222211 12222 233588999888865544
Q ss_pred eechHHHHhHH
Q 034205 75 VGSTNEVMSLH 85 (101)
Q Consensus 75 igg~~~~~~~~ 85 (101)
.+..+.+.+..
T Consensus 131 l~~lq~l~~~~ 141 (370)
T cd06389 131 LSTLQAVLDSA 141 (370)
T ss_pred HHHHHHHHHhh
Confidence 44555555544
No 411
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=40.06 E-value=1.2e+02 Score=20.84 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=41.4
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCC-cEEEEecCC--CCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVH-PMVYEIDQD--PEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~-~~~~~vd~~--~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
.+.|.+++..+|+-+.-+|.++.+++-+ ...++|..+ .+..++.+.| ...+.-=.||+|+=-.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l---~~~~~kFIlf~DDLsF 117 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLL---RDRPYKFILFCDDLSF 117 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHH---hcCCCCEEEEecCCCC
Confidence 4579999999999999999999877543 566777654 3334433333 3333333578887443
No 412
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=40.04 E-value=72 Score=18.16 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhcCCCcEEEEecC---------------CCCcHHHHHHHHhhCCCCCccEEEECCeEeech
Q 034205 22 CLCYAVNILFQELGVHPMVYEIDQ---------------DPEGKEMEKALMRMGCNAPVPAVFISGQLVGST 78 (101)
Q Consensus 22 p~C~~~~~~l~~~~i~~~~~~vd~---------------~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~ 78 (101)
-...+++.++++.|++++..-.+. .|..+...+.+++......+|+..|+.+..|-.
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~ 85 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMM 85 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccC
Confidence 356788888888888754333321 122222334444444557789999988765543
No 413
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=40.00 E-value=1.4e+02 Score=21.39 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=37.4
Q ss_pred CcEEEEecCC---ChhHHHHHHHHHhcCCCcEEE-EecCCCCcHHHHHHHHhhCCCCCccEEEECC
Q 034205 11 KGVVIFSKSS---CCLCYAVNILFQELGVHPMVY-EIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 11 ~~vvif~~~~---Cp~C~~~~~~l~~~~i~~~~~-~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g 72 (101)
.++.+.+.+. -+...+++..|.+.++.+..+ ++..++....+.+.+........=-.|=|+|
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 92 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG 92 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4566655543 456788899999999887644 3556677666666655542222223444555
No 414
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=39.97 E-value=1.2e+02 Score=20.55 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHhcCCCcEEEEec
Q 034205 21 CCLCYAVNILFQELGVHPMVYEID 44 (101)
Q Consensus 21 Cp~C~~~~~~l~~~~i~~~~~~vd 44 (101)
-.|..+++..|.++|++...++..
T Consensus 47 ~~y~~~~~~af~~lG~~v~~l~~~ 70 (233)
T PRK05282 47 DDYTAKVAEALAPLGIEVTGIHRV 70 (233)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccc
Confidence 347889999999999876555443
No 415
>PLN02590 probable tyrosine decarboxylase
Probab=39.95 E-value=1.7e+02 Score=22.44 Aligned_cols=73 Identities=11% Similarity=0.161 Sum_probs=44.4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCC---cEEEEecCC----CCcHHHHHHHHhhCCCCCccEEEE---CCeEeechHH
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVH---PMVYEIDQD----PEGKEMEKALMRMGCNAPVPAVFI---SGQLVGSTNE 80 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~---~~~~~vd~~----~~~~~~~~~l~~~~g~~~vP~vfv---~g~~igg~~~ 80 (101)
.++++|.+....+|. .+...-+|+. ...+.+|.. -+...+++.+.+-......|.+++ +-...|.+|+
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 468999998888875 3333444442 455666632 345567777765433346776654 3345788888
Q ss_pred HHhHH
Q 034205 81 VMSLH 85 (101)
Q Consensus 81 ~~~~~ 85 (101)
+.++.
T Consensus 306 l~~Ia 310 (539)
T PLN02590 306 LVPLG 310 (539)
T ss_pred HHHHH
Confidence 76654
No 416
>PLN02790 transketolase
Probab=39.80 E-value=75 Score=24.84 Aligned_cols=89 Identities=7% Similarity=-0.061 Sum_probs=50.2
Q ss_pred CcEEEEecC-CChhHHHHHHHHHhcCCCcEEEEecCCCC-cHHHHHHHHhhCCCCCccEEEECCeEeechHHHH------
Q 034205 11 KGVVIFSKS-SCCLCYAVNILFQELGVHPMVYEIDQDPE-GKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVM------ 82 (101)
Q Consensus 11 ~~vvif~~~-~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~-~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~------ 82 (101)
.+|++.+.. -...|.++...|++.|+....+++-.-.- ..+...+.....+...-+.|.+.....+|+....
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~ 620 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKV 620 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceE
Confidence 456665553 46678899999999999998888865422 2222122222223333355655544456554321
Q ss_pred ----hHHHcCCchhhcccCCC
Q 034205 83 ----SLHLSGNLIPLLKPYQP 99 (101)
Q Consensus 83 ----~~~~~g~L~~~l~~~g~ 99 (101)
..-.+|....+++..|+
T Consensus 621 igvd~Fg~sg~~~~l~~~~Gl 641 (654)
T PLN02790 621 IGVDRFGASAPAGILYKEFGF 641 (654)
T ss_pred EEeCCCcCcCCHHHHHHHhCC
Confidence 22245666666666554
No 417
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.47 E-value=1.4e+02 Score=21.12 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=41.1
Q ss_pred CcEEEEecCCChh----HHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCL----CYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~----C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.++....-|. -+...+...+.|+.++.++++.+....++.+.+.+.+....+=-|++
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (295)
T PRK14174 32 PGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILV 95 (295)
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3455555555554 44556667889999999999988777778888888866554433333
No 418
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=39.39 E-value=79 Score=18.39 Aligned_cols=54 Identities=19% Similarity=0.029 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCC---------------CCcHHHHHHHHhhCCCCCccEEEECCeEee
Q 034205 23 LCYAVNILFQELGVHPMVYEIDQD---------------PEGKEMEKALMRMGCNAPVPAVFISGQLVG 76 (101)
Q Consensus 23 ~C~~~~~~l~~~~i~~~~~~vd~~---------------~~~~~~~~~l~~~~g~~~vP~vfv~g~~ig 76 (101)
-..++++++++.|++++..-.... |-.+...+.+++..+...+|+..|+.+.-|
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 456888888999887654322211 112223344555555667899999976554
No 419
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=39.02 E-value=11 Score=23.76 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=12.6
Q ss_pred EEecC-CChhHHHHHHHH
Q 034205 15 IFSKS-SCCLCYAVNILF 31 (101)
Q Consensus 15 if~~~-~Cp~C~~~~~~l 31 (101)
||+-. .||+|++....|
T Consensus 5 IFGpei~CPhCRQ~ipAL 22 (163)
T TIGR02652 5 IFGPEIRCPHCRQNIPAL 22 (163)
T ss_pred ccCCcCcCchhhcccchh
Confidence 34443 699999988776
No 420
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=38.77 E-value=77 Score=18.11 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhcCCCcEEEEecC---------------CCCcHHHHHHHHhhCCCCCccEEEECCeEeech
Q 034205 22 CLCYAVNILFQELGVHPMVYEIDQ---------------DPEGKEMEKALMRMGCNAPVPAVFISGQLVGST 78 (101)
Q Consensus 22 p~C~~~~~~l~~~~i~~~~~~vd~---------------~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~ 78 (101)
-...+++.++++.|++++..-.+. .|..+...+.+++......+|+..|+....|-.
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~m 89 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGAQYGKL 89 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChhhcccC
Confidence 355678888888888764332221 112222344455554455688888887655443
No 421
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=38.71 E-value=1.4e+02 Score=21.47 Aligned_cols=49 Identities=16% Similarity=0.328 Sum_probs=32.2
Q ss_pred CcEEEEecCCC---hhHHHHHHHHHhcCCCcEEE-EecCCCCcHHHHHHHHhh
Q 034205 11 KGVVIFSKSSC---CLCYAVNILFQELGVHPMVY-EIDQDPEGKEMEKALMRM 59 (101)
Q Consensus 11 ~~vvif~~~~C---p~C~~~~~~l~~~~i~~~~~-~vd~~~~~~~~~~~l~~~ 59 (101)
.++.+.+.+.. +.-.++...|++.++.+..+ ++..++....+.+.....
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~ 81 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVF 81 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 45655555443 56778999999999887665 356677766655554433
No 422
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=38.68 E-value=1.5e+02 Score=21.32 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=32.1
Q ss_pred CcEEEEecCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCcHHHHHHHHhh
Q 034205 11 KGVVIFSKSS---CCLCYAVNILFQELGVHPMVYE-IDQDPEGKEMEKALMRM 59 (101)
Q Consensus 11 ~~vvif~~~~---Cp~C~~~~~~l~~~~i~~~~~~-vd~~~~~~~~~~~l~~~ 59 (101)
.++.|.+.+. .++..++...|.+.++.+..++ +..++....+.+.+...
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~ 81 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELY 81 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4555555543 3567889999999898876654 55666666666555443
No 423
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=38.56 E-value=27 Score=18.40 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=10.5
Q ss_pred EEEECCeEeechH
Q 034205 67 AVFISGQLVGSTN 79 (101)
Q Consensus 67 ~vfv~g~~igg~~ 79 (101)
.|++||+++|-..
T Consensus 14 ~V~vdg~~~G~tp 26 (71)
T PF08308_consen 14 EVYVDGKYIGTTP 26 (71)
T ss_pred EEEECCEEeccCc
Confidence 6899999999443
No 424
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=38.54 E-value=34 Score=18.65 Aligned_cols=17 Identities=18% Similarity=0.340 Sum_probs=12.6
Q ss_pred CChhHH-HHHHHHHhcCC
Q 034205 20 SCCLCY-AVNILFQELGV 36 (101)
Q Consensus 20 ~Cp~C~-~~~~~l~~~~i 36 (101)
=||.|+ .|+..+++.++
T Consensus 17 PC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 17 PCPECRIHAKEAIQKNNI 34 (70)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 499997 56777777654
No 425
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.51 E-value=1.4e+02 Score=21.07 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=41.2
Q ss_pred CcEEEEecCCCh----hHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCC----LCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp----~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.++....-| |-+...+..++.|+.++.+++..+....++.+.+.+.+....+=-|++
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (297)
T PRK14167 32 PGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILV 95 (297)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 345555555444 445556667889999999999888777778888888866555544444
No 426
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=38.43 E-value=96 Score=19.10 Aligned_cols=45 Identities=20% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 25 YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 25 ~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+++..+|++++++|+.++.......++..+.+. ......+-++++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~-~~~~~~~Ktlv~ 46 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLG-ELPGAHTKNLFL 46 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhc-cCCCceEEEEEE
Confidence 367889999999999988765444444333321 223344555554
No 427
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.42 E-value=1.4e+02 Score=20.97 Aligned_cols=60 Identities=3% Similarity=0.104 Sum_probs=41.0
Q ss_pred CcEEEEecCCCh----hHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCC----LCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp----~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.+.....-| |-+...+...+.|+.++.+++..+....++.+.+.+.+..+.+=-|++
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (285)
T PRK14191 32 PKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILV 95 (285)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 345555444444 455666667889999999999988777788888888865554443433
No 428
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=38.28 E-value=1.5e+02 Score=21.19 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=32.8
Q ss_pred CcEEEEecC---CChhHHHHHHHHHhcCCCcEEEE-ecCCCCcHHHHHHHHhh
Q 034205 11 KGVVIFSKS---SCCLCYAVNILFQELGVHPMVYE-IDQDPEGKEMEKALMRM 59 (101)
Q Consensus 11 ~~vvif~~~---~Cp~C~~~~~~l~~~~i~~~~~~-vd~~~~~~~~~~~l~~~ 59 (101)
.++++.+.+ ..+...++...|.+.++++..++ +..++....+.+.+...
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~ 77 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAY 77 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 355555443 35678899999999999876653 66667766666665443
No 429
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=38.15 E-value=52 Score=16.00 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=22.8
Q ss_pred EecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeech
Q 034205 42 EIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGST 78 (101)
Q Consensus 42 ~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~ 78 (101)
-++.+....+..+.+.+. +...+|++--+|+++|=.
T Consensus 11 ~v~~~~~l~~~~~~~~~~-~~~~~~V~d~~~~~~G~i 46 (57)
T PF00571_consen 11 TVSPDDSLEEALEIMRKN-GISRLPVVDEDGKLVGII 46 (57)
T ss_dssp EEETTSBHHHHHHHHHHH-TSSEEEEESTTSBEEEEE
T ss_pred EEcCcCcHHHHHHHHHHc-CCcEEEEEecCCEEEEEE
Confidence 344445555555555554 677888876778887754
No 430
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=38.06 E-value=72 Score=17.66 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=31.7
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCC-cEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECC
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVH-PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~-~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g 72 (101)
..+|++..+..|++-.+++..- +.|.. .-.++ ........ ..........+|.++|..
T Consensus 33 ~gkIvlv~rg~~~~~~k~~~a~-~~GA~gvIi~~-~~~~~~~~---~~~~~~~~~~iP~v~I~~ 91 (101)
T PF02225_consen 33 KGKIVLVERGSCSFDDKVRNAQ-KAGAKGVIIYN-PPPNNGSM---IDSEDPDPIDIPVVFISY 91 (101)
T ss_dssp TTSEEEEESTSSCHHHHHHHHH-HTTESEEEEE--TSCSCTTT---TCEBTTTSTBSEEEEE-H
T ss_pred cceEEEEecCCCCHHHHHHHHH-HcCCEEEEEEe-CCccccCc---ccccCCCCcEEEEEEeCH
Confidence 4578888999999977776655 44543 34444 11111110 001112457899999964
No 431
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=37.66 E-value=52 Score=20.11 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=25.6
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCCc
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHP 38 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~ 38 (101)
++++++.....|+|||+..=.|+..+...|...+..+
T Consensus 43 ~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~ 79 (159)
T PF03031_consen 43 EFLEELSKHYEVVIWTSASEEYAEPVLDALDPNGKLF 79 (159)
T ss_dssp HHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSE
T ss_pred HHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhcccc
Confidence 3456666667899999988888888888888654444
No 432
>PRK12559 transcriptional regulator Spx; Provisional
Probab=37.62 E-value=46 Score=20.26 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=26.2
Q ss_pred CCCcEEEEecCCC-CcHHHHHHHHhhCCCCCccEEEECCeEeechHH
Q 034205 35 GVHPMVYEIDQDP-EGKEMEKALMRMGCNAPVPAVFISGQLVGSTNE 80 (101)
Q Consensus 35 ~i~~~~~~vd~~~-~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~ 80 (101)
+-.|.....+... ...++.+.|.+...--.-|.|..+++.+-|+++
T Consensus 61 ~~~~k~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~iGf~~ 107 (131)
T PRK12559 61 SKTFQDLNINIEELSLNEFYKLIIEHPLMLRRPIMLDEKRLQIGFND 107 (131)
T ss_pred cHHHHhCCCCcccCCHHHHHHHHHhCcceEeCCEEEeCCEEEEcCCH
Confidence 3335554444321 223344455544444556999989998888864
No 433
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.61 E-value=1.4e+02 Score=20.88 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=40.6
Q ss_pred CcEEEEecCCChh----HHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 11 KGVVIFSKSSCCL----CYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 11 ~~vvif~~~~Cp~----C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
+.+.++....-|. -+...+..++.|+.++.+++..+....++.+.+.+.+....+=-|+
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 95 (284)
T PRK14190 33 PGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGIL 95 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 3455555555554 4455666788999999999998877777888888876655443333
No 434
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=37.61 E-value=1.1e+02 Score=19.60 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=32.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCC------------cEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeE
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVH------------PMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQL 74 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~------------~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ 74 (101)
++.+-|+++-| .-|+.+|+.+++. |...+|-.......++ .+.+.+|.+.-=.+|+|++.
T Consensus 63 ~lavASRt~~P--~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~-~i~~~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 63 KLAVASRTDEP--DWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFR-RIHRKTGIPYEEMLFFDDES 134 (169)
T ss_dssp -EEEEE--S-H--HHHHHHHHHTT-C----------CCECEEEESSS-HHHHHH-HHHHHH---GGGEEEEES-H
T ss_pred EEEEEECCCCh--HHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHH-HHHHhcCCChhHEEEecCch
Confidence 34444444445 8899999998887 4556666554444343 34555676666689999874
No 435
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=37.22 E-value=12 Score=23.98 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=24.9
Q ss_pred CCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEe
Q 034205 35 GVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLV 75 (101)
Q Consensus 35 ~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~i 75 (101)
|+.|..+++.-.-+...+...+...-| .-+|+|+|++..|
T Consensus 132 GvayDHVELnfY~NGKn~e~p~~gvRG-~vyPvvYVddsAI 171 (197)
T KOG4030|consen 132 GVAYDHVELNFYVNGKNVEDPITGVRG-PVYPVVYVDDSAI 171 (197)
T ss_pred EEEeeeEEEEEEEcCceeccccccccc-ceeeEEEeCCceE
Confidence 566777777655555544333333334 6789999998655
No 436
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=37.21 E-value=40 Score=19.48 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=11.8
Q ss_pred ccEEEECCeEe--echHHHHhH
Q 034205 65 VPAVFISGQLV--GSTNEVMSL 84 (101)
Q Consensus 65 vP~vfv~g~~i--gg~~~~~~~ 84 (101)
.-..|.+|++. -..+++.++
T Consensus 49 ~~v~~~GGEPll~~~~~~l~~~ 70 (119)
T PF13394_consen 49 STVVFTGGEPLLYLNPEDLIEL 70 (119)
T ss_dssp -EEEEESSSGGGSTTHHHHHHH
T ss_pred EEEEEECCCCccccCHHHHHHH
Confidence 34667888876 455545444
No 437
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=37.14 E-value=14 Score=18.05 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHhhCCCCCccEEEECC
Q 034205 55 ALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 55 ~l~~~~g~~~vP~vfv~g 72 (101)
.+-...|+...|+|++.|
T Consensus 7 viWHilGY~AmPvIil~G 24 (42)
T TIGR02808 7 TIWHVLGYGAMPFIILSG 24 (42)
T ss_pred HHHHHhcccccchHHhhh
Confidence 455567999999999887
No 438
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=37.00 E-value=90 Score=19.13 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCcEEEEecCCCC
Q 034205 26 AVNILFQELGVHPMVYEIDQDPE 48 (101)
Q Consensus 26 ~~~~~l~~~~i~~~~~~vd~~~~ 48 (101)
.+.++|++++++|+.++-...+.
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~ 24 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPD 24 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCC
Confidence 47889999999999998886543
No 439
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=36.67 E-value=11 Score=23.61 Aligned_cols=12 Identities=17% Similarity=0.323 Sum_probs=10.5
Q ss_pred CChhHHHHHHHH
Q 034205 20 SCCLCYAVNILF 31 (101)
Q Consensus 20 ~Cp~C~~~~~~l 31 (101)
.||+|++....|
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 699999988776
No 440
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=36.58 E-value=56 Score=18.68 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=13.7
Q ss_pred HHHHHHHhhCCCCCccEEEECCeE
Q 034205 51 EMEKALMRMGCNAPVPAVFISGQL 74 (101)
Q Consensus 51 ~~~~~l~~~~g~~~vP~vfv~g~~ 74 (101)
++++.+.+ .+.+|++|+.+..
T Consensus 75 ~Lr~~lr~---~~GvPvi~l~~~~ 95 (101)
T PF04900_consen 75 ELRRRLRK---IPGVPVIYLRRNV 95 (101)
T ss_pred HHHHHHhc---CCCCCEEEEECCE
Confidence 35556653 4559999998653
No 441
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=36.27 E-value=65 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=15.6
Q ss_pred ccEEEECCeEeechHHHHhHHHcCCch
Q 034205 65 VPAVFISGQLVGSTNEVMSLHLSGNLI 91 (101)
Q Consensus 65 vP~vfv~g~~igg~~~~~~~~~~g~L~ 91 (101)
.|++|.++ .-|.+++++++.+-|-+.
T Consensus 60 ~pvtvcGD-vHGqf~dl~ELfkiGG~~ 85 (319)
T KOG0371|consen 60 CPVTVCGD-VHGQFHDLIELFKIGGLA 85 (319)
T ss_pred cceEEecC-cchhHHHHHHHHHccCCC
Confidence 35555544 457777777777666553
No 442
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.22 E-value=1.5e+02 Score=20.77 Aligned_cols=60 Identities=8% Similarity=0.188 Sum_probs=41.2
Q ss_pred CcEEEEecCCChhHH----HHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLCY----AVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~----~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.+..-..-|... .-.+..++.|+.++.+++..+....++.+.+.+.+....+=-|++
T Consensus 33 p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIiv 96 (286)
T PRK14175 33 PKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILV 96 (286)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 345555555555544 445556788999999999988777778888888766555544444
No 443
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=35.97 E-value=1.1e+02 Score=19.24 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhc--------------C-CCcEEEEecCCCC----------cHHHHHHHHhhCCCCCccEEEECCeE-e
Q 034205 22 CLCYAVNILFQEL--------------G-VHPMVYEIDQDPE----------GKEMEKALMRMGCNAPVPAVFISGQL-V 75 (101)
Q Consensus 22 p~C~~~~~~l~~~--------------~-i~~~~~~vd~~~~----------~~~~~~~l~~~~g~~~vP~vfv~g~~-i 75 (101)
..|.++..++... + .+...+|+..++. .....+.|......+.+=.|++|+.. +
T Consensus 6 tL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd~~~G~ 85 (153)
T PF00549_consen 6 TLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVDIVGGI 85 (153)
T ss_dssp HHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEEEESSS
T ss_pred HHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEEecccc
Confidence 3577777777777 4 4478899987766 44555666666667888899998843 2
Q ss_pred echHH
Q 034205 76 GSTNE 80 (101)
Q Consensus 76 gg~~~ 80 (101)
|.+++
T Consensus 86 g~~~~ 90 (153)
T PF00549_consen 86 GSCED 90 (153)
T ss_dssp SSHHH
T ss_pred CchHH
Confidence 34443
No 444
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=35.82 E-value=96 Score=18.35 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=23.8
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEec
Q 034205 9 SEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEID 44 (101)
Q Consensus 9 ~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd 44 (101)
+..+|++|-..+...+..+..+|..+|.. ...++
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~ 118 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLE 118 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeC
Confidence 34578888876666677777888888874 44444
No 445
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.79 E-value=1.5e+02 Score=20.71 Aligned_cols=60 Identities=8% Similarity=0.198 Sum_probs=41.5
Q ss_pred CcEEEEecCCChhH----HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLC----YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C----~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.+.....-|.. +.-.+...+.|+.++.+++..+....++.+.+.+.+...++=-|++
T Consensus 31 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 94 (282)
T PRK14169 31 PTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILV 94 (282)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 44655555555544 4555566888999999999988777778888888766555544444
No 446
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=35.72 E-value=1e+02 Score=18.63 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCC
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVH 37 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~ 37 (101)
+.+|++.-+..|++..+++..- +.|..
T Consensus 42 ~~~IvLv~RG~C~F~~K~~~Aq-~aGA~ 68 (127)
T cd02125 42 RPVILLLDRGGCFFTLKAWNAQ-QAGAA 68 (127)
T ss_pred CceEEEEECCCcCHHHHHHHHH-HCCCc
Confidence 4468888888999999987766 44544
No 447
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=35.64 E-value=30 Score=25.01 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=14.6
Q ss_pred HhhhcCCcEEEEecCCChhHHHHHHHH
Q 034205 5 TRLASEKGVVIFSKSSCCLCYAVNILF 31 (101)
Q Consensus 5 ~~~~~~~~vvif~~~~Cp~C~~~~~~l 31 (101)
++++ +..|.+.+-|+||-|..-...+
T Consensus 42 r~lL-p~~I~lisGPGCPVCVtp~~~I 67 (355)
T PF01924_consen 42 RSLL-PENIELISGPGCPVCVTPQGDI 67 (355)
T ss_dssp HHHS--TTEEEEE-S--TTTTS-HHHH
T ss_pred HhhC-CCCcEEecCCCCccEECcHHHH
Confidence 3443 5679999999999997444433
No 448
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=35.30 E-value=24 Score=18.62 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=9.5
Q ss_pred CCChhHHHHHHHH
Q 034205 19 SSCCLCYAVNILF 31 (101)
Q Consensus 19 ~~Cp~C~~~~~~l 31 (101)
|-||.|.++-.-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 4699999876543
No 449
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=35.16 E-value=1.7e+02 Score=20.99 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=37.4
Q ss_pred hhhcCCcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcH
Q 034205 6 RLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGK 50 (101)
Q Consensus 6 ~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~ 50 (101)
.+....+|.+.+.++|+-..-++.+-..++.++..+..+.+-...
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~ 104 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRI 104 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChh
Confidence 344466899999999999999999999999999888888765543
No 450
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=34.34 E-value=72 Score=23.44 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=16.5
Q ss_pred EEEEecCCChhHH----HHHHHHHh-cCCCcEEEEecCC
Q 034205 13 VVIFSKSSCCLCY----AVNILFQE-LGVHPMVYEIDQD 46 (101)
Q Consensus 13 vvif~~~~Cp~C~----~~~~~l~~-~~i~~~~~~vd~~ 46 (101)
|+.++...|..-. .+++.+.+ .|+|+-.++.|..
T Consensus 354 VI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~~ 392 (413)
T TIGR02260 354 LLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDLV 392 (413)
T ss_pred EEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCCC
Confidence 5555555554322 22333333 5666666666544
No 451
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.17 E-value=1.7e+02 Score=20.57 Aligned_cols=60 Identities=10% Similarity=0.242 Sum_probs=40.9
Q ss_pred CcEEEEecCCChh----HHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCL----CYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~----C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.++....-|. -+.-.+..++.|+.++.+++..+....++.+.+.+.+..+++=-|++
T Consensus 31 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIiv 94 (282)
T PRK14166 31 SCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILV 94 (282)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3455555554454 44555667888999999999887777778888888766555544443
No 452
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=33.98 E-value=1.1e+02 Score=20.26 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeech
Q 034205 25 YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGST 78 (101)
Q Consensus 25 ~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~ 78 (101)
+.|.+++.... +=...=|...+.....-+..++..| +-+++++++||.
T Consensus 50 ~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g-----~~~v~~RWlgGt 97 (196)
T TIGR01012 50 RVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTG-----ARAIAGRFTPGT 97 (196)
T ss_pred HHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhC-----CceECCeeCCCC
Confidence 34444444444 3344445544443333233333344 345677777774
No 453
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=33.97 E-value=1.2e+02 Score=18.94 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=16.5
Q ss_pred HHhhhcCCcEEEEecCCChhHHHHHHHHHhc
Q 034205 4 VTRLASEKGVVIFSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 4 ~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~ 34 (101)
++++-+...+.|||...=.|...+...|+-.
T Consensus 67 L~~l~~~yel~I~T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 67 LKEASKLYEMHVYTMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred HHHHHhhcEEEEEeCCcHHHHHHHHHHhCcC
Confidence 3344334466666666555555555555433
No 454
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=33.95 E-value=64 Score=20.36 Aligned_cols=29 Identities=14% Similarity=0.477 Sum_probs=20.1
Q ss_pred CCcEEEEe-cCCChhHHHH-HHHHHhcCCCc
Q 034205 10 EKGVVIFS-KSSCCLCYAV-NILFQELGVHP 38 (101)
Q Consensus 10 ~~~vvif~-~~~Cp~C~~~-~~~l~~~~i~~ 38 (101)
...+++|. ++-|++|+.. ..+.+++|++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~ 129 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKS 129 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCe
Confidence 34566655 4679999966 55557889884
No 455
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=33.61 E-value=31 Score=16.20 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=8.4
Q ss_pred HHHHHHHhcCCCc
Q 034205 26 AVNILFQELGVHP 38 (101)
Q Consensus 26 ~~~~~l~~~~i~~ 38 (101)
+.|.+|.++||+|
T Consensus 8 ~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 8 QLKRILDEHGIEF 20 (35)
T ss_dssp HHHHHHHHHT---
T ss_pred HHHHHHHHcCCCC
Confidence 6788899998876
No 456
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=33.44 E-value=25 Score=25.55 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=17.5
Q ss_pred CCcEEEEecCCChhHHHHHHHHH
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQ 32 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~ 32 (101)
+..|.+.+-|+||-|..-...++
T Consensus 57 p~~IelisGPGCPVCVtp~~~ID 79 (369)
T TIGR00075 57 PENLELVHGPGCPVCVTPMERID 79 (369)
T ss_pred CCCcEEecCCCCCcEeCcHHHHH
Confidence 56789999999999975544443
No 457
>PF07955 DUF1687: Protein of unknown function (DUF1687) ; InterPro: IPR012882 This is a family of uncharacterised fungal proteins. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process, 0005739 mitochondrion; PDB: 1WPI_A.
Probab=33.29 E-value=1.6 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=18.9
Q ss_pred ChHHHhh-hcCCcEEEEecCCChhHHHHHHHHHhc
Q 034205 1 MDKVTRL-ASEKGVVIFSKSSCCLCYAVNILFQEL 34 (101)
Q Consensus 1 ~~~~~~~-~~~~~vvif~~~~Cp~C~~~~~~l~~~ 34 (101)
|..++.+ -+...|++|..+.-|.|.++..+|++.
T Consensus 1 MSlFR~lQ~sp~~ITLFH~~~~p~S~~~l~~Lk~a 35 (133)
T PF07955_consen 1 MSLFRTLQKSPDIITLFHNPSSPASNRLLNLLKQA 35 (133)
T ss_dssp ---SS--SS---EEEEEE---SSSCCCCCTTTTSS
T ss_pred CchhhhccCCCCeEEEecCCCChhHHHHHHHHHHh
Confidence 4445555 344568999999999999999998765
No 458
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=33.21 E-value=1.6e+02 Score=20.05 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=24.0
Q ss_pred cEEEEecC-C--ChhHHHHHHHHHhcCCC-cEEEEecC
Q 034205 12 GVVIFSKS-S--CCLCYAVNILFQELGVH-PMVYEIDQ 45 (101)
Q Consensus 12 ~vvif~~~-~--Cp~C~~~~~~l~~~~i~-~~~~~vd~ 45 (101)
+|++..+. . =.++......|.++|.. ...++++.
T Consensus 30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~ 67 (250)
T TIGR02069 30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRE 67 (250)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCC
Confidence 56665432 2 34688999999999985 67788754
No 459
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=33.14 E-value=98 Score=17.65 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=17.5
Q ss_pred CCcEEEEecC-CChhHHHHHHHHHhcCCC
Q 034205 10 EKGVVIFSKS-SCCLCYAVNILFQELGVH 37 (101)
Q Consensus 10 ~~~vvif~~~-~Cp~C~~~~~~l~~~~i~ 37 (101)
..+|++|... .|.....+...|.+.|.+
T Consensus 64 ~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 64 EKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 4567777554 355556666677777764
No 460
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.91 E-value=1.7e+02 Score=20.43 Aligned_cols=60 Identities=7% Similarity=0.094 Sum_probs=41.0
Q ss_pred CcEEEEecCCChhH----HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLC----YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C----~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.+.....-|.. +.-.+..++.|+.++.+.++.+....++.+.+.+.+....+=-|++
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlv 96 (278)
T PRK14172 33 PKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIML 96 (278)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 34555555555544 4445667888999999999988777778888888765554444433
No 461
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=32.86 E-value=1.7e+02 Score=20.38 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=40.4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeE
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQL 74 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~ 74 (101)
..+++|+-++|+-..-++.+.++++..+.............+...+.. ......+|||.-+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~---l~~~~vl~IDEi~ 112 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTN---LEEGDVLFIDEIH 112 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHh---cccCCEEEEecHh
Confidence 358999999999999999999999887655443332333333333332 2345688888743
No 462
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=32.84 E-value=1.3e+02 Score=18.90 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=30.5
Q ss_pred hHHHhhhcC-CcEEEEecCCCh--hHHHHHHHHHhcCCCcEEEEecC
Q 034205 2 DKVTRLASE-KGVVIFSKSSCC--LCYAVNILFQELGVHPMVYEIDQ 45 (101)
Q Consensus 2 ~~~~~~~~~-~~vvif~~~~Cp--~C~~~~~~l~~~~i~~~~~~vd~ 45 (101)
+.+.++++. ..|.+.+.+.-| ++.++-.+|.+.| |+.+-|+.
T Consensus 7 ~~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP 51 (140)
T COG1832 7 EDIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNP 51 (140)
T ss_pred HHHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCc
Confidence 345666664 457788887766 6889999999999 66666664
No 463
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=32.50 E-value=50 Score=22.31 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccE
Q 034205 24 CYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPA 67 (101)
Q Consensus 24 C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~ 67 (101)
|+....-|..++ ..-|.-|...++-+.|++.+|+..+|+
T Consensus 29 c~~yl~gl~~l~-----l~~d~IPql~~in~~L~~~TGw~~~pV 67 (221)
T cd00361 29 CREYLEGLELLG-----LPEDRIPQLEDVSEFLKALTGWTLVPV 67 (221)
T ss_pred CHHHHHHHHHcC-----CCCCCCCCHHHHHHHHHhhcCCEEEec
Confidence 555555566665 334556777778889999999887765
No 464
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=32.24 E-value=1.3e+02 Score=22.29 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCC---------CCCccEEEECCe-----------------Eeec
Q 034205 24 CYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGC---------NAPVPAVFISGQ-----------------LVGS 77 (101)
Q Consensus 24 C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g---------~~~vP~vfv~g~-----------------~igg 77 (101)
++++..+=..++...-.+-........+.++.++++.| +..+|.+..+|. +-|.
T Consensus 92 ~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~Gh 171 (420)
T PF01704_consen 92 VEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGH 171 (420)
T ss_dssp HHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TG
T ss_pred HHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCC
Confidence 55555555566776655556665666667778877544 256677766653 1133
Q ss_pred hHHHHhHHHcCCchhhccc
Q 034205 78 TNEVMSLHLSGNLIPLLKP 96 (101)
Q Consensus 78 ~~~~~~~~~~g~L~~~l~~ 96 (101)
-+-...+..+|-|+.++++
T Consensus 172 Gdi~~aL~~sG~Ld~l~~~ 190 (420)
T PF01704_consen 172 GDIYRALYNSGLLDKLLAR 190 (420)
T ss_dssp GGHHHHHHHTTHHHHHHHT
T ss_pred cceehhhhccChHHHHHHc
Confidence 4455667788888876643
No 465
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=32.24 E-value=1.4e+02 Score=19.88 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCe
Q 034205 23 LCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQ 73 (101)
Q Consensus 23 ~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~ 73 (101)
....++.+|+++++.--.+.+..+....++.+.+. .....+|.+.+..+
T Consensus 137 ~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~--~~~~y~p~iiV~NK 185 (233)
T cd01896 137 DEKTIKAILREYKIHNADVLIREDITVDDLIDVIE--GNRVYIPCLYVYNK 185 (233)
T ss_pred CHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHh--CCceEeeEEEEEEC
Confidence 46889999999999877777777766666666663 23567788877654
No 466
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=32.20 E-value=27 Score=25.38 Aligned_cols=23 Identities=9% Similarity=0.262 Sum_probs=17.6
Q ss_pred CCcEEEEecCCChhHHHHHHHHH
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQ 32 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~ 32 (101)
+..|.+.+-|+||-|..-...++
T Consensus 51 P~~ielisGPGCPVCVtp~~~ID 73 (364)
T PRK15062 51 PENIELIHGPGCPVCVTPMGRID 73 (364)
T ss_pred CCCcEEecCCCCCcEeCcHHHHH
Confidence 56799999999999975444443
No 467
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=32.20 E-value=33 Score=17.46 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=9.6
Q ss_pred CChhHHHHHHHH
Q 034205 20 SCCLCYAVNILF 31 (101)
Q Consensus 20 ~Cp~C~~~~~~l 31 (101)
.||.|+.++.--
T Consensus 35 RC~~CR~~rk~~ 46 (49)
T PF13451_consen 35 RCPSCRQARKQR 46 (49)
T ss_pred cCHHHHHHHHHh
Confidence 699999987643
No 468
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=32.00 E-value=2.6e+02 Score=22.10 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=42.4
Q ss_pred cEEEEec-CCChhHHHHHHHHHhcCCCcEEEEecCC-CCcHHHHHHHHhhCCCCCccEEEECCeEeechHH
Q 034205 12 GVVIFSK-SSCCLCYAVNILFQELGVHPMVYEIDQD-PEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNE 80 (101)
Q Consensus 12 ~vvif~~-~~Cp~C~~~~~~l~~~~i~~~~~~vd~~-~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~ 80 (101)
+|.+.+- +.|+.|..+...|.+.|+..+.+|--.- |-..++-..|. ..-.+=+.+-+|-..||+-.
T Consensus 503 ~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La---~~h~~~vtlEe~~~~GG~Gs 570 (627)
T COG1154 503 KVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELA---KSHDLVVTLEENVVDGGFGS 570 (627)
T ss_pred cEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHH---hhcCeEEEEecCcccccHHH
Confidence 4544333 4699999999999999999888886542 33344333333 32223344557777899854
No 469
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=31.85 E-value=1.7e+02 Score=20.05 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=29.3
Q ss_pred cEEEEecCCChhHHHHHHHH-------HhcCC-CcEEEEecCCCC-cHHHHHHHHhhCCCCCccEE
Q 034205 12 GVVIFSKSSCCLCYAVNILF-------QELGV-HPMVYEIDQDPE-GKEMEKALMRMGCNAPVPAV 68 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l-------~~~~i-~~~~~~vd~~~~-~~~~~~~l~~~~g~~~vP~v 68 (101)
.||-+...+|.+|..-...| .+.|. ...++-|+.... .+.+..+|+... ...+|+.
T Consensus 29 tvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~-~~~ipVy 93 (238)
T PF04592_consen 29 TVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRV-SEHIPVY 93 (238)
T ss_pred EeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhC-CCCCcee
Confidence 45667788999998643333 33454 344555554333 232334555442 2345554
No 470
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=31.70 E-value=42 Score=20.65 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=16.8
Q ss_pred hCCCCCccEEEECCeEeechH
Q 034205 59 MGCNAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 59 ~~g~~~vP~vfv~g~~igg~~ 79 (101)
..|....-.|+|||+.+|...
T Consensus 91 f~gv~~~a~v~vNG~~vg~~~ 111 (167)
T PF02837_consen 91 FEGVDYAAEVYVNGKLVGSHE 111 (167)
T ss_dssp ESEEESEEEEEETTEEEEEEE
T ss_pred eccceEeeEEEeCCeEEeeeC
Confidence 356677889999999998754
No 471
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.70 E-value=45 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCCccEEEECCeEeechHHHH
Q 034205 62 NAPVPAVFISGQLVGSTNEVM 82 (101)
Q Consensus 62 ~~~vP~vfv~g~~igg~~~~~ 82 (101)
..||..+..+|+.|||.|--.
T Consensus 163 SNTVtllvkdGkviG~iDACi 183 (332)
T COG4020 163 SNTVTLLVKDGKVIGGIDACI 183 (332)
T ss_pred CCeEEEEEEcCeEeechhhhc
Confidence 468888999999999998643
No 472
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=31.65 E-value=2.4e+02 Score=21.98 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=44.8
Q ss_pred cCCcEEEEecCCChhH--HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHHHhHHH
Q 034205 9 SEKGVVIFSKSSCCLC--YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHL 86 (101)
Q Consensus 9 ~~~~vvif~~~~Cp~C--~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~~~~~~ 86 (101)
....=+++...|+|.- .+.++.+++.......++... ++ . ....+|+.+-|.+++..++.+.+++-
T Consensus 270 ~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~~~~~v~~~~-~~-~----------~~~~~Pt~l~N~~~~~pFE~lv~mYg 337 (646)
T PRK05771 270 LKTDKTFAIEGWVPEDRVKKLKELIDKATGGSAYVEFVE-PD-E----------EEEEVPTKLKNPKFIKPFESLTEMYS 337 (646)
T ss_pred hcCCcEEEEEEEeehhHHHHHHHHHHHhcCCcEEEEEeC-CC-C----------cCCCCCEEeeCCchhhhHHHHHHHcC
Confidence 3345566677899954 577888888765432333322 11 1 13569999999999999999998873
No 473
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=31.37 E-value=1.1e+02 Score=17.65 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=13.2
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCC
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVH 37 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~ 37 (101)
+|++|...++.....+...|...|.+
T Consensus 81 ~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred EEEEECCCCCccHHHHHHHHHHcCCC
Confidence 45555544444444455555555544
No 474
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.26 E-value=58 Score=17.47 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=6.2
Q ss_pred HHHHHHHhcCCCc
Q 034205 26 AVNILFQELGVHP 38 (101)
Q Consensus 26 ~~~~~l~~~~i~~ 38 (101)
.++.+|++.++.+
T Consensus 54 ~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 54 KIKEILEENGIEY 66 (73)
T ss_pred HHHHHHHHCCCCe
Confidence 4444445555444
No 475
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.19 E-value=1.9e+02 Score=20.31 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=40.6
Q ss_pred CcEEEEecCCChhHH----HHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEE
Q 034205 11 KGVVIFSKSSCCLCY----AVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVF 69 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~----~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vf 69 (101)
+.+.+.....-|... ...+..++.|+.++.+.+..+....++.+.+.+.+....+=-|.
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIi 95 (284)
T PRK14179 33 PGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGIL 95 (284)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 346566655555544 44566788899999999998877777888888886555443333
No 476
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.19 E-value=76 Score=20.99 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCCCCccEEEECCeEeechHHHHhHH
Q 034205 60 GCNAPVPAVFISGQLVGSTNEVMSLH 85 (101)
Q Consensus 60 ~g~~~vP~vfv~g~~igg~~~~~~~~ 85 (101)
-|.-..|++|++++..-|.|.+-.+.
T Consensus 172 rGvfGaPtfivg~q~fwGqDRL~~le 197 (203)
T COG3917 172 RGVFGAPTFIVGDQLFWGQDRLYQLE 197 (203)
T ss_pred cCccCCCeEEECCeeeechhHHHHHH
Confidence 36778999999999999999775543
No 477
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=31.15 E-value=1.1e+02 Score=19.86 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=28.1
Q ss_pred ChhHHHH---HHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECCeEeechHHH
Q 034205 21 CCLCYAV---NILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEV 81 (101)
Q Consensus 21 Cp~C~~~---~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g~~igg~~~~ 81 (101)
.|.+.++ ++.+.+.+....+...+-.....+..+.+.+.-....-+.+.+=|.-.||+--.
T Consensus 11 sp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~ 74 (187)
T PF05728_consen 11 SPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYAT 74 (187)
T ss_pred CCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHH
Confidence 4555554 555666676666655554433333222222221111111144445577887543
No 478
>PRK08557 hypothetical protein; Provisional
Probab=31.14 E-value=2.2e+02 Score=21.11 Aligned_cols=60 Identities=17% Similarity=-0.026 Sum_probs=38.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEECC
Q 034205 13 VVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISG 72 (101)
Q Consensus 13 vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~g 72 (101)
.++.+-++-.+|..+..++.+.+.++..+-+|..-+..+..+.+.+......+|..++.+
T Consensus 183 ~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~ 242 (417)
T PRK08557 183 AINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDG 242 (417)
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 555666778889888888888776777777776544444334444433333477777655
No 479
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=31.09 E-value=2e+02 Score=20.49 Aligned_cols=49 Identities=12% Similarity=0.281 Sum_probs=33.2
Q ss_pred CcEEEEecC---CChhHHHHHHHHHhcCCCcEEE-EecCCCCcHHHHHHHHhh
Q 034205 11 KGVVIFSKS---SCCLCYAVNILFQELGVHPMVY-EIDQDPEGKEMEKALMRM 59 (101)
Q Consensus 11 ~~vvif~~~---~Cp~C~~~~~~l~~~~i~~~~~-~vd~~~~~~~~~~~l~~~ 59 (101)
.++.+.+.+ ..++..++...|.+.++.+..+ ++..++....+.+.+...
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~ 76 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAY 76 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHH
Confidence 355554433 2478889999999988887755 466677777666665544
No 480
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.99 E-value=1.9e+02 Score=20.31 Aligned_cols=60 Identities=5% Similarity=0.096 Sum_probs=40.7
Q ss_pred CcEEEEecCCChhHH----HHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLCY----AVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~----~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.+.....-|... ...+...+.|+.++.+.+..+....++.+.+.+.+....+=-|++
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlv 97 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILL 97 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 446666665555544 445566888999999999887777777788888765555433333
No 481
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.96 E-value=1.9e+02 Score=20.32 Aligned_cols=60 Identities=10% Similarity=0.158 Sum_probs=40.5
Q ss_pred CcEEEEecCCChhH----HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLC----YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C----~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.++....-|.. +...+..++.|+.++.+.+..+....++.+.+.+.+....+=-|++
T Consensus 30 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 93 (287)
T PRK14173 30 PHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILV 93 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 45666655555544 4555667888999999999887767777778888765554444433
No 482
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=30.93 E-value=84 Score=17.19 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=14.6
Q ss_pred CCCccEEEECCeEeechH
Q 034205 62 NAPVPAVFISGQLVGSTN 79 (101)
Q Consensus 62 ~~~vP~vfv~g~~igg~~ 79 (101)
...-|.+.|||++.++.+
T Consensus 52 C~~gP~~~v~~~~~~~~~ 69 (80)
T cd03081 52 CACSPAAMIDGEVHGRVD 69 (80)
T ss_pred cCCCCEEEECCEEECCCC
Confidence 466799999999887763
No 483
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=30.86 E-value=61 Score=22.42 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=19.4
Q ss_pred EEecCCChhHHHHHHHHHh-cCCC
Q 034205 15 IFSKSSCCLCYAVNILFQE-LGVH 37 (101)
Q Consensus 15 if~~~~Cp~C~~~~~~l~~-~~i~ 37 (101)
++-+..||..+.++..|.+ +|++
T Consensus 169 i~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 169 LAKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred eecccCChHHHHHHHHHHHhhCCC
Confidence 4556689999999999998 7875
No 484
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=30.85 E-value=2e+02 Score=20.63 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=31.9
Q ss_pred CcEEEEecCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCcHHHHHHHHh
Q 034205 11 KGVVIFSKSS---CCLCYAVNILFQELGVHPMVYE-IDQDPEGKEMEKALMR 58 (101)
Q Consensus 11 ~~vvif~~~~---Cp~C~~~~~~l~~~~i~~~~~~-vd~~~~~~~~~~~l~~ 58 (101)
.++.|.+.+. .++..+++..|.+.++.+..++ +..++....+.+.+..
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~ 82 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEV 82 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHH
Confidence 4555555442 5678889999999999887663 6666666655544433
No 485
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=30.58 E-value=2.1e+02 Score=21.37 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=40.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCcEEEEecCC------CCcHHHHHHHHhhCCCCCccEEEECCe
Q 034205 12 GVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQD------PEGKEMEKALMRMGCNAPVPAVFISGQ 73 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~~vd~~------~~~~~~~~~l~~~~g~~~vP~vfv~g~ 73 (101)
.+.+|+-|+|+-..-++.+..+.++++..++.... .....+++.+.... ......||+|.-
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~-~~~p~Il~iDEi 156 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK-KNAPCIIFIDEI 156 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHH-hcCCCEEEEech
Confidence 58999999999999999999999998766654321 11223444444432 223346788763
No 486
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=30.44 E-value=1e+02 Score=19.23 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=21.9
Q ss_pred hHHHhhhcCCcEEEEecCCChhHHHHHHHHHh
Q 034205 2 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQE 33 (101)
Q Consensus 2 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~ 33 (101)
++++++.+...++|||+..=.|...+...+.-
T Consensus 49 eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 49 EFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred HHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 45666666678888888877766666655553
No 487
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=30.36 E-value=1.1e+02 Score=18.61 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCcEEEEecC
Q 034205 25 YAVNILFQELGVHPMVYEIDQ 45 (101)
Q Consensus 25 ~~~~~~l~~~~i~~~~~~vd~ 45 (101)
.++.++|++.+++|+.++...
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~ 22 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPE 22 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCC
Confidence 467889999999999888774
No 488
>PRK13947 shikimate kinase; Provisional
Probab=30.31 E-value=1e+02 Score=18.90 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=25.0
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcE
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPM 39 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~ 39 (101)
..|++.+.++|+-..-++.+-+.++.+|-
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~i 30 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFI 30 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 46889999999999999999899988763
No 489
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=30.29 E-value=1.2e+02 Score=18.59 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCCcEEEEecCCCC
Q 034205 26 AVNILFQELGVHPMVYEIDQDPE 48 (101)
Q Consensus 26 ~~~~~l~~~~i~~~~~~vd~~~~ 48 (101)
.+..+|++.+++|+.++-+..+.
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~~ 25 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDED 25 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCCC
Confidence 46788999999999999876553
No 490
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.17 E-value=2e+02 Score=20.26 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=41.3
Q ss_pred CcEEEEecCCChhHH----HHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLCY----AVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~----~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.+.....-|... ...+..++.|+.++.+++..+....++.+.+.+++....+=-|++
T Consensus 27 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlv 90 (287)
T PRK14181 27 PGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILV 90 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 456666665555544 445556788999999999887777777788888866555544444
No 491
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=31 Score=24.84 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=14.4
Q ss_pred CCcEEEEecCCChhHHH
Q 034205 10 EKGVVIFSKSSCCLCYA 26 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~ 26 (101)
+..|.+.+-|+||-|..
T Consensus 53 PeNi~~i~GPGCPVCVt 69 (364)
T COG0409 53 PENVEFIHGPGCPVCVT 69 (364)
T ss_pred ccceEEecCCCCCeEee
Confidence 56789999999999963
No 492
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.97 E-value=2e+02 Score=20.26 Aligned_cols=60 Identities=10% Similarity=0.194 Sum_probs=41.0
Q ss_pred CcEEEEecCCChhH----HHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEE
Q 034205 11 KGVVIFSKSSCCLC----YAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFI 70 (101)
Q Consensus 11 ~~vvif~~~~Cp~C----~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv 70 (101)
+.+.+.....-|.. +...+..++.|+.++.+.++.+....++.+.+.+.+....+=-|++
T Consensus 33 p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlv 96 (296)
T PRK14188 33 PGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILV 96 (296)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEE
Confidence 34555555555544 4555667888999999999888777778888888866555444443
No 493
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=29.91 E-value=2.1e+02 Score=20.40 Aligned_cols=48 Identities=13% Similarity=0.383 Sum_probs=30.5
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCcEEE-EecCCCCcHHHHHHHHh
Q 034205 11 KGVVIFSKSSCCLCYAVNILFQELGVHPMVY-EIDQDPEGKEMEKALMR 58 (101)
Q Consensus 11 ~~vvif~~~~Cp~C~~~~~~l~~~~i~~~~~-~vd~~~~~~~~~~~l~~ 58 (101)
.++.+.+.+....-..++..|++.++.+..+ ++..++....+.+....
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 72 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRL 72 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHH
Confidence 4566666655545567788888888776544 46666666655554433
No 494
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=29.88 E-value=1.3e+02 Score=17.95 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=20.9
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCc
Q 034205 10 EKGVVIFSKSSCCLCYAVNILFQELGVHP 38 (101)
Q Consensus 10 ~~~vvif~~~~Cp~C~~~~~~l~~~~i~~ 38 (101)
..+|++.-+..|++..+++. ..+.|...
T Consensus 39 ~gkIvLV~RG~CsF~~K~~n-Aq~aGA~a 66 (117)
T cd04813 39 DGKVALVLRGGCGFLDKVMW-AQRRGAKA 66 (117)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcE
Confidence 45788888999999999887 45556553
No 495
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=29.77 E-value=52 Score=18.64 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=16.6
Q ss_pred CChhHHHHHHHHHhcCCC
Q 034205 20 SCCLCYAVNILFQELGVH 37 (101)
Q Consensus 20 ~Cp~C~~~~~~l~~~~i~ 37 (101)
.|+-|+.+-.+|.+.|..
T Consensus 28 CC~GC~~V~~~i~~~gL~ 45 (88)
T PF12156_consen 28 CCPGCQAVYQLIHENGLE 45 (88)
T ss_pred ccHHHHHHHHHHHHcchH
Confidence 699999999999999876
No 496
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=29.75 E-value=48 Score=18.92 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=9.5
Q ss_pred CCccEEEECCeEe
Q 034205 63 APVPAVFISGQLV 75 (101)
Q Consensus 63 ~~vP~vfv~g~~i 75 (101)
...|+|.|+|+.+
T Consensus 38 ~d~p~V~V~Gr~~ 50 (86)
T PF11521_consen 38 EDDPTVMVAGRPY 50 (86)
T ss_dssp -SS-EEEETTEEE
T ss_pred ccCceEEECCEEe
Confidence 3489999999875
No 497
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=29.71 E-value=19 Score=18.34 Aligned_cols=7 Identities=29% Similarity=0.918 Sum_probs=4.8
Q ss_pred cCCChhH
Q 034205 18 KSSCCLC 24 (101)
Q Consensus 18 ~~~Cp~C 24 (101)
..+||+|
T Consensus 49 ~~~CP~C 55 (55)
T PF14311_consen 49 GKGCPYC 55 (55)
T ss_pred CCCCCCC
Confidence 4578877
No 498
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=29.68 E-value=82 Score=21.57 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=25.7
Q ss_pred HHhhhcCCcEEEEecCCChhHHHHH-HHHHhcCCCcEEEEecCC
Q 034205 4 VTRLASEKGVVIFSKSSCCLCYAVN-ILFQELGVHPMVYEIDQD 46 (101)
Q Consensus 4 ~~~~~~~~~vvif~~~~Cp~C~~~~-~~l~~~~i~~~~~~vd~~ 46 (101)
+-..+.+..+++|=--++|-|++|. .++++.|+......||..
T Consensus 198 lyprl~~GGiIi~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~~ 241 (248)
T PF05711_consen 198 LYPRLSPGGIIIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDWT 241 (248)
T ss_dssp HGGGEEEEEEEEESSTTTHHHHHHHHHHHHHTT--S--EE-SSS
T ss_pred HHhhcCCCeEEEEeCCCChHHHHHHHHHHHHcCCCCccEEecCc
Confidence 3344556667887777778898774 455778888777777653
No 499
>PRK09301 circadian clock protein KaiB; Provisional
Probab=29.54 E-value=95 Score=18.40 Aligned_cols=66 Identities=8% Similarity=0.077 Sum_probs=41.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhc-----C--CCcEEEEecCCCCcHHHHHHHHhhCCCCCccEEEEC-----CeEeechH
Q 034205 12 GVVIFSKSSCCLCYAVNILFQEL-----G--VHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFIS-----GQLVGSTN 79 (101)
Q Consensus 12 ~vvif~~~~Cp~C~~~~~~l~~~-----~--i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~vfv~-----g~~igg~~ 79 (101)
...+|....-|-+.++.+-+.+. + ...+.+||..+|...+ ....-.+|++.-- -+.||..+
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE-------~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAE-------EDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHh-------HCCeEEecHHhhcCCCCcceeecccc
Confidence 46789999999888776555432 2 2336777777775433 2445567776432 35788887
Q ss_pred HHHhH
Q 034205 80 EVMSL 84 (101)
Q Consensus 80 ~~~~~ 84 (101)
+..+.
T Consensus 81 d~~kV 85 (103)
T PRK09301 81 DREKV 85 (103)
T ss_pred cHHHH
Confidence 76554
No 500
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=29.26 E-value=67 Score=23.18 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCCCCcHHHHHHHHhhCCCCCccEE-EECCeEeec
Q 034205 23 LCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAV-FISGQLVGS 77 (101)
Q Consensus 23 ~C~~~~~~l~~~~i~~~~~~vd~~~~~~~~~~~l~~~~g~~~vP~v-fv~g~~igg 77 (101)
..+.+..+|+.++++|..++-+.++....+.+.++... ...-|.. .+....+..
T Consensus 103 ~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~-~~~~p~a~l~~~~~~~~ 157 (361)
T TIGR03297 103 QGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHAL-ATSRPYALVVRKGTFAS 157 (361)
T ss_pred HhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHH-HHCCCEEEEEccccccc
Confidence 36677999999999998885333333333444444432 2345543 455555544
Done!