BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034206
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
 pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
 pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
          Length = 343

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 8/44 (18%)

Query: 50  KAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANS 93
           +++ +  MVGL L++          DGT+PGY  H   G+ A S
Sbjct: 291 QSHSDMGMVGLFLVKKP--------DGTIPGYEPHEHGGATAKS 326


>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
 pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
 pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
 pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
           Alternate Crystal Form.
 pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
           Alternate Crystal Form.
 pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
           Alternate Crystal Form.
 pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
           Alternate Crystal Form Complexed With Acetovanillone.
 pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
           Alternate Crystal Form Complexed With Acetovanillone.
 pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
           Alternate Crystal Form Complexed With Acetovanillone
          Length = 313

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 50  KAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGAN 92
           +++ +  MVGL L++          DGT+PGY  HR +   A+
Sbjct: 256 QSHSDMGMVGLFLVKKP--------DGTIPGYDPHRHHHGAAS 290


>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
 pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
 pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
 pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
 pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
          Length = 565

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 9   VVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNG 43
           V    FGK V  +L FNE E +   +Y +G ++ G
Sbjct: 223 VCFEKFGKTVKNWLTFNEPETFCSVSYGTGVLAPG 257


>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
          Length = 565

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 9   VVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNG 43
           V    FGK V  +L FNE E +   +Y +G ++ G
Sbjct: 223 VCFEKFGKKVKNWLTFNEPETFCSVSYGTGVLAPG 257


>pdb|2UVK|A Chain A, Structure Of Yjht
 pdb|2UVK|B Chain B, Structure Of Yjht
          Length = 357

 Score = 25.0 bits (53), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 36  RSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTL 78
           +SG +S G  YG+S  ++N+L++    I    A G    D  L
Sbjct: 299 KSGELSQGRAYGVSLPWNNSLLI----IGGETAGGKAVTDSVL 337


>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
          Length = 565

 Score = 25.0 bits (53), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 9   VVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNG 43
           V    FGK V  +L FN+ E +   +Y +G ++ G
Sbjct: 223 VCFEKFGKTVKNWLTFNDPETFCSVSYGTGVLAPG 257


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,282,544
Number of Sequences: 62578
Number of extensions: 114421
Number of successful extensions: 283
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 10
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)