BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034206
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7ZA58|THIE_BACA2 Thiamine-phosphate synthase OS=Bacillus amyloliquefaciens (strain
           FZB42) GN=thiE PE=3 SV=1
          Length = 224

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 13  AFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKG 70
           A G  + G    N +E+ + E   + YV  G VY      D   + G+TLI+  R +G
Sbjct: 108 AIGDMILGVSAHNVSEVKRAEAAGADYVGMGPVYPTETKKDAEAVQGVTLIEEVRRQG 165


>sp|A6V4G9|LFTR_PSEA7 Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas
           aeruginosa (strain PA7) GN=aat PE=3 SV=1
          Length = 226

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 21/91 (23%)

Query: 13  AFGKWVDGFLEFNETELY------QIENYRSGYVSNGSVYGI------------SKAYDN 54
           A G W+   ++    EL+       +E +++G +  G +YG+            S+A DN
Sbjct: 108 ADGTWITTPMQLAYQELHLRGVAHSVEVWQAGQLVGG-LYGLAMGRLFFGESMFSRA-DN 165

Query: 55  ALMVG-LTLIQSARAKGAVCLDGTLPGYHLH 84
           A  VG +TL++  R  G V +D  +P  HLH
Sbjct: 166 ASKVGFVTLVRHLRDAGFVLIDCQMPTRHLH 196


>sp|O32321|C20AA_BACUF Pesticidal crystal protein cry20Aa OS=Bacillus thuringiensis subsp.
           fukuokaensis GN=cry20Aa PE=2 SV=1
          Length = 753

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)

Query: 35  YRSGYVSNGSVYGISKAYDNALM 57
           YRS   + G++YGIS++YDN LM
Sbjct: 115 YRSA--ATGAIYGISRSYDNYLM 135


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,668,343
Number of Sequences: 539616
Number of extensions: 1332805
Number of successful extensions: 3274
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3272
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)