Query 034206
Match_columns 101
No_of_seqs 108 out of 150
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 10:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4287 Pectin acetylesterase 99.8 3.3E-20 7.1E-25 154.9 0.8 60 40-99 20-79 (402)
2 PF03283 PAE: Pectinacetyleste 99.7 1.1E-17 2.5E-22 134.9 5.3 56 44-99 2-57 (361)
3 KOG2833 Mevalonate pyrophospha 44.8 10 0.00022 32.8 0.9 19 67-85 260-278 (395)
4 PF12587 DUF3761: Protein of u 39.9 15 0.00031 26.1 0.9 28 68-95 61-91 (91)
5 PF05054 DUF673: Protein of un 28.8 37 0.00081 29.0 1.8 42 58-99 127-168 (357)
6 PF01683 EB: EB module; Inter 28.7 34 0.00074 20.0 1.1 18 69-86 30-50 (52)
7 PF11420 Subtilosin_A: Bacteri 26.5 28 0.0006 21.0 0.4 18 66-83 6-24 (35)
8 PF04785 Rhabdo_M2: Rhabdoviru 24.7 20 0.00043 28.4 -0.5 32 53-84 34-70 (202)
9 PRK03673 hypothetical protein; 22.4 95 0.0021 26.2 3.0 25 69-98 123-150 (396)
10 PF03079 ARD: ARD/ARD' family; 22.2 83 0.0018 23.4 2.4 24 71-99 96-120 (157)
11 PHA02994 hypothetical protein; 21.6 41 0.00088 27.2 0.7 25 57-86 92-116 (218)
12 PF04708 Pox_F16: Poxvirus F16 20.6 43 0.00093 27.0 0.6 26 56-86 91-116 (218)
No 1
>KOG4287 consensus Pectin acetylesterase and similar proteins [Cell wall/membrane/envelope biogenesis]
Probab=99.78 E-value=3.3e-20 Score=154.87 Aligned_cols=60 Identities=67% Similarity=0.993 Sum_probs=52.7
Q ss_pred eeeceeeeecccccccceeeEEEeccccccCceecCCCCCeeeeecccCCCCccEEEEEE
Q 034206 40 VSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLE 99 (101)
Q Consensus 40 w~~~~~~~~~~~~~~~~~V~ltLl~~A~~~gAvCLDGSpPgYy~~~G~G~Ga~~Wli~lE 99 (101)
|+..+++......++.++|++|+++.|.++||+|||||+|||||+||+|+|+|+|+||+|
T Consensus 20 ~s~~lv~~~~~~~s~~~~v~ltli~~A~akGAvClDGSlpgYhl~~g~GSg~n~wliqle 79 (402)
T KOG4287|consen 20 WSIPLVFGSLVIGSPGLMVPLTLIRGAAAKGAVCLDGSLPGYHLHRGSGSGANNWLIQLE 79 (402)
T ss_pred hhhhhhhhhhcccCccccchhHHHhhHhhcCceecCCCCcceeeccCCCccccceeEecc
Confidence 444456666555566689999999999999999999999999999999999999999998
No 2
>PF03283 PAE: Pectinacetylesterase
Probab=99.70 E-value=1.1e-17 Score=134.93 Aligned_cols=56 Identities=45% Similarity=0.727 Sum_probs=50.7
Q ss_pred eeeeecccccccceeeEEEeccccccCceecCCCCCeeeeecccCCCCccEEEEEE
Q 034206 44 SVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLE 99 (101)
Q Consensus 44 ~~~~~~~~~~~~~~V~ltLl~~A~~~gAvCLDGSpPgYy~~~G~G~Ga~~Wli~lE 99 (101)
++|.+....++...|+||+|++|+++||+|+|||||+||+|||+|+|++||+||||
T Consensus 2 ~~~~~~~~~~~~~~~~l~~l~~~~~~~a~C~DGS~~~yy~~~g~g~~s~~~li~le 57 (361)
T PF03283_consen 2 LICLLVASNAQSDEVKLTLLDDAVDTGAVCLDGSPPGYYFRPGSGSGSNKWLIFLE 57 (361)
T ss_pred eEEEeeeccccccccceEEecCCCCCCCCcCCCCCCcEEEccCCCCCCceEEEEec
Confidence 34555555678899999999999999999999999999999999999999999998
No 3
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=44.80 E-value=10 Score=32.84 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.0
Q ss_pred cccCceecCCCCCeeeeec
Q 034206 67 RAKGAVCLDGTLPGYHLHR 85 (101)
Q Consensus 67 ~~~gAvCLDGSpPgYy~~~ 85 (101)
.+--|+|||-+||=+|.+.
T Consensus 260 NqFHAvclDT~PPI~YmNd 278 (395)
T KOG2833|consen 260 NQFHAVCLDTFPPIFYLND 278 (395)
T ss_pred hhhhhhhhccCCCeEEecc
Confidence 4567899999999999863
No 4
>PF12587 DUF3761: Protein of unknown function (DUF3761); InterPro: IPR022236 This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 157 amino acids in length.
Probab=39.89 E-value=15 Score=26.07 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=15.7
Q ss_pred ccCceecCCCCCeeeeecc--cC-CCCccEE
Q 034206 68 AKGAVCLDGTLPGYHLHRG--YG-SGANSWL 95 (101)
Q Consensus 68 ~~gAvCLDGSpPgYy~~~G--~G-~Ga~~Wl 95 (101)
...|+|-|||.--=--++| +| .|-..|+
T Consensus 61 gatA~CkDGT~S~S~~~~GaCS~HgGV~~W~ 91 (91)
T PF12587_consen 61 GATARCKDGTYSFSAHRRGACSGHGGVAQWL 91 (91)
T ss_pred cceeeecCCCcccccccCccccCCCChhccC
Confidence 3578999998532222445 22 2455563
No 5
>PF05054 DUF673: Protein of unknown function (DUF673); InterPro: IPR007748 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf109; it is a family of uncharacterised viral proteins.
Probab=28.83 E-value=37 Score=29.03 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=33.4
Q ss_pred eeEEEeccccccCceecCCCCCeeeeecccCCCCccEEEEEE
Q 034206 58 VGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLE 99 (101)
Q Consensus 58 V~ltLl~~A~~~gAvCLDGSpPgYy~~~G~G~Ga~~Wli~lE 99 (101)
-|+-.-.....+.-+||+|-.|-+|+.+---+.-++++|||.
T Consensus 127 CPiq~~~~~~~~k~~~l~Ge~pL~~~~~~~~~~~~~FlIcF~ 168 (357)
T PF05054_consen 127 CPIQFDYFVNYNKLIPLNGENPLSHFNKLLDDNYNNFLICFN 168 (357)
T ss_pred CCEeeccccCccceeeecCcChHHHHHHHhhcccCcEEEEec
Confidence 444444434457889999999999999998888889999985
No 6
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=28.75 E-value=34 Score=20.04 Aligned_cols=18 Identities=44% Similarity=0.933 Sum_probs=13.7
Q ss_pred cCceecCCC---CCeeeeecc
Q 034206 69 KGAVCLDGT---LPGYHLHRG 86 (101)
Q Consensus 69 ~gAvCLDGS---pPgYy~~~G 86 (101)
.++.|.||. +|||+.+.|
T Consensus 30 ~~s~C~~g~C~C~~g~~~~~~ 50 (52)
T PF01683_consen 30 GGSVCVNGRCQCPPGYVEVGG 50 (52)
T ss_pred CcCEEcCCEeECCCCCEecCC
Confidence 578888886 788877665
No 7
>PF11420 Subtilosin_A: Bacteriocin subtilosin A; InterPro: IPR021539 Subtilosin A is a bacteriocin from Bacillus subtilis.The protein has a cyclized peptide backbone and forms three cross-liks between the sulphurs of Cys13, Cys7 and Cys4 and the alpha-positions of Phe22,Thr28 and Phe31 []. ; PDB: 1PXQ_A.
Probab=26.46 E-value=28 Score=21.01 Aligned_cols=18 Identities=39% Similarity=0.966 Sum_probs=5.0
Q ss_pred ccccCceec-CCCCCeeee
Q 034206 66 ARAKGAVCL-DGTLPGYHL 83 (101)
Q Consensus 66 A~~~gAvCL-DGSpPgYy~ 83 (101)
+-+.||-|| ||-.|.|-.
T Consensus 6 ~csigaacl~dgpipdfei 24 (35)
T PF11420_consen 6 TCSIGAACLVDGPIPDFEI 24 (35)
T ss_dssp TT-S-----TTTT---S--
T ss_pred ecccchhhhccCCCCcchh
Confidence 345789997 898888754
No 8
>PF04785 Rhabdo_M2: Rhabdovirus matrix protein M2; InterPro: IPR006870 M protein is involved in condensing and targeting the ribonucleoprotein (RNP) coil to the plasma membrane. M interacts specifically with the transmembrane spike protein (G) and it is important for the incorporation of G protein into budding virions [].; GO: 0016032 viral reproduction, 0019031 viral envelope; PDB: 2W2S_A.
Probab=24.66 E-value=20 Score=28.37 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=12.8
Q ss_pred cccceeeEEEeccccccCceecCC-----CCCeeeee
Q 034206 53 DNALMVGLTLIQSARAKGAVCLDG-----TLPGYHLH 84 (101)
Q Consensus 53 ~~~~~V~ltLl~~A~~~gAvCLDG-----SpPgYy~~ 84 (101)
+++..|||+-+.+-......|..| ||-||-||
T Consensus 34 pppeyvpl~ei~~k~n~rnfcingevk~cspngysfr 70 (202)
T PF04785_consen 34 PPPEYVPLKEITSKKNMRNFCINGEVKICSPNGYSFR 70 (202)
T ss_dssp ---------------EEEEEEEEEEEEEE-TT-EEHH
T ss_pred CCccccchhHhccccchhheeecceEEEeCCCCccHH
Confidence 566789999888765667789998 89999987
No 9
>PRK03673 hypothetical protein; Provisional
Probab=22.39 E-value=95 Score=26.24 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=17.4
Q ss_pred cCceecC---CCCCeeeeecccCCCCccEEEEE
Q 034206 69 KGAVCLD---GTLPGYHLHRGYGSGANSWLIQL 98 (101)
Q Consensus 69 ~gAvCLD---GSpPgYy~~~G~G~Ga~~Wli~l 98 (101)
+||..+| ||.||++++.+ +++++.|
T Consensus 123 ~ga~~l~N~~GtApG~~~~~~-----~~~i~~L 150 (396)
T PRK03673 123 ASAEMIDNPVGTACGFALQLN-----RCLMFFT 150 (396)
T ss_pred CCCeeccCCCccCCcEEEEEC-----CEEEEEE
Confidence 4667775 99999999744 2566554
No 10
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=22.20 E-value=83 Score=23.38 Aligned_cols=24 Identities=38% Similarity=0.749 Sum_probs=17.8
Q ss_pred ceecCCCCCeeeeecccCCCCccEE-EEEE
Q 034206 71 AVCLDGTLPGYHLHRGYGSGANSWL-IQLE 99 (101)
Q Consensus 71 AvCLDGSpPgYy~~~G~G~Ga~~Wl-i~lE 99 (101)
-.|+||| ||+.-+. +.++|+ |+.|
T Consensus 96 R~i~~G~--g~Fdvr~---~~~~wiri~~e 120 (157)
T PF03079_consen 96 RYIVDGS--GYFDVRD---GDDVWIRILCE 120 (157)
T ss_dssp EEEEECE--EEEEEE----TTCEEEEEEEE
T ss_pred EEEeCcE--EEEEEEc---CCCEEEEEEEc
Confidence 3899998 7766663 578999 8876
No 11
>PHA02994 hypothetical protein; Provisional
Probab=21.55 E-value=41 Score=27.20 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=16.7
Q ss_pred eeeEEEeccccccCceecCCCCCeeeeecc
Q 034206 57 MVGLTLIQSARAKGAVCLDGTLPGYHLHRG 86 (101)
Q Consensus 57 ~V~ltLl~~A~~~gAvCLDGSpPgYy~~~G 86 (101)
+..+..+.+. .=.||+||.|.--.+
T Consensus 92 ~~~iyFV~D~-----l~fDG~PPsFr~v~~ 116 (218)
T PHA02994 92 PIKIYFVRDN-----LAFDGIPPSFRMVNI 116 (218)
T ss_pred ceEEEEEeec-----eeeccCCCcceeecc
Confidence 3555555553 557999999875444
No 12
>PF04708 Pox_F16: Poxvirus F16 protein; InterPro: IPR006798 This entry represents the Poxvirus F16 proteins.
Probab=20.62 E-value=43 Score=27.00 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=16.8
Q ss_pred ceeeEEEeccccccCceecCCCCCeeeeecc
Q 034206 56 LMVGLTLIQSARAKGAVCLDGTLPGYHLHRG 86 (101)
Q Consensus 56 ~~V~ltLl~~A~~~gAvCLDGSpPgYy~~~G 86 (101)
....+..+.+. .=.||+||.|.--.+
T Consensus 91 ~~~~lyFVkD~-----L~fDG~pP~Fr~v~~ 116 (218)
T PF04708_consen 91 NPIKLYFVKDN-----LAFDGSPPSFRPVNM 116 (218)
T ss_pred CceEEEEEecc-----eEecccCCcceEecc
Confidence 34455555553 668999999875443
Done!