Query 034206
Match_columns 101
No_of_seqs 108 out of 150
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 18:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2s_A Matrix protein; viral a 32.1 9.6 0.00033 29.1 -0.0 32 53-84 34-70 (202)
2 1pxq_A Subtilisin A; thioether 31.3 17 0.00057 21.1 0.9 18 66-83 6-24 (35)
3 2xfv_A Regulatory protein SWI6 29.6 20 0.00069 25.8 1.3 27 51-79 9-35 (125)
4 3jtz_A Integrase; four strande 24.1 98 0.0034 19.6 3.8 29 69-100 16-44 (88)
5 2jpk_A Bacteriocin lactococcin 17.1 10 0.00035 22.1 -1.9 13 79-91 11-23 (35)
6 2pp6_A Gifsy-2 prophage ATP-bi 16.0 1.1E+02 0.0037 21.2 2.8 28 68-101 66-96 (102)
7 3ju0_A Phage integrase; four s 14.6 1.3E+02 0.0044 19.8 2.8 28 70-100 17-44 (108)
8 3kl4_B DPAP B, YSCV, signal pe 13.3 1E+02 0.0035 18.2 1.8 15 84-98 2-16 (42)
9 2nv4_A UPF0066 protein AF_0241 13.3 43 0.0015 24.0 0.1 10 69-78 108-117 (147)
10 3cuq_B Vacuolar protein-sortin 11.5 50 0.0017 24.4 0.0 25 62-86 188-212 (218)
No 1
>2w2s_A Matrix protein; viral assembly, viral morphogenesis, polymer, viral protein, VSV; 2.75A {Lagos bat virus}
Probab=32.07 E-value=9.6 Score=29.09 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=18.0
Q ss_pred cccceeeEEEeccccccCceecCC-----CCCeeeee
Q 034206 53 DNALMVGLTLIQSARAKGAVCLDG-----TLPGYHLH 84 (101)
Q Consensus 53 ~~~~~V~ltLl~~A~~~gAvCLDG-----SpPgYy~~ 84 (101)
+++..|||+-+..-......|..| ||-||-||
T Consensus 34 pppeyvpl~ei~gk~n~rnfcingevkvcspngysfr 70 (202)
T 2w2s_A 34 PPPEYVPLTQIKGKENVRNFCINGEIKICSPNGYSFR 70 (202)
T ss_dssp CCCC----------CEEEEEEEEEEEEEECTTCEEHH
T ss_pred CCcccccHHHhccccchhheeEcceEEEeCCCCccHH
Confidence 567889999998866667789998 89999987
No 2
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=31.31 E-value=17 Score=21.07 Aligned_cols=18 Identities=39% Similarity=0.966 Sum_probs=13.7
Q ss_pred ccccCceec-CCCCCeeee
Q 034206 66 ARAKGAVCL-DGTLPGYHL 83 (101)
Q Consensus 66 A~~~gAvCL-DGSpPgYy~ 83 (101)
+-+.||-|| ||-.|.|-.
T Consensus 6 ~csigaacl~dgpipdfev 24 (35)
T 1pxq_A 6 TCSIGAACLVDGPIPDFEI 24 (35)
T ss_dssp TTCSCCCCCTTTTCCCSCC
T ss_pred ecccchhhhccCCCCCchh
Confidence 346789997 898898754
No 3
>2xfv_A Regulatory protein SWI6; cell-cycle, regulation; 1.90A {Saccharomyces cerevisiae}
Probab=29.62 E-value=20 Score=25.80 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.0
Q ss_pred cccccceeeEEEeccccccCceecCCCCC
Q 034206 51 AYDNALMVGLTLIQSARAKGAVCLDGTLP 79 (101)
Q Consensus 51 ~~~~~~~V~ltLl~~A~~~gAvCLDGSpP 79 (101)
+.+. ..||+||.++ .++|-+|||+=.|
T Consensus 9 ~g~~-~~ipltL~r~-~~~GyFlL~~FlP 35 (125)
T 2xfv_A 9 LGPH-NEIPLTLTRD-SETGHFLLKHFLP 35 (125)
T ss_dssp ESTT-SCEEEEEEEE-TTTCCEESGGGHH
T ss_pred hCcc-ccCceEEEEe-cCCCceeHhhHHH
Confidence 3444 7899999988 5789999998776
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=24.13 E-value=98 Score=19.61 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=20.6
Q ss_pred cCceecCCCCCeeeeecccCCCCccEEEEEEe
Q 034206 69 KGAVCLDGTLPGYHLHRGYGSGANSWLIQLEV 100 (101)
Q Consensus 69 ~gAvCLDGSpPgYy~~~G~G~Ga~~Wli~lE~ 100 (101)
+....-|| +|.|++-.- +|++.|++...+
T Consensus 16 k~~~~~Dg--~GL~L~V~p-sG~K~w~~ryr~ 44 (88)
T 3jtz_A 16 KPFKVSDS--HGLYLLVKP-GGSRHWYLKYRI 44 (88)
T ss_dssp SCEEEECS--TTEEEEECT-TSCEEEEEEEEE
T ss_pred CcEEEecC--CceEEEEec-CCCEEEEEEEEe
Confidence 44566788 699988543 478999987654
No 5
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=17.11 E-value=10 Score=22.07 Aligned_cols=13 Identities=46% Similarity=1.183 Sum_probs=10.7
Q ss_pred CeeeeecccCCCC
Q 034206 79 PGYHLHRGYGSGA 91 (101)
Q Consensus 79 PgYy~~~G~G~Ga 91 (101)
|+|-|-+|+|.|+
T Consensus 11 pay~fi~g~~kg~ 23 (35)
T 2jpk_A 11 PAYEFIKGFGKGA 23 (35)
T ss_dssp HHHHHHHHHTTTC
T ss_pred hHHHHHHHHhhhh
Confidence 7899999988764
No 6
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=16.02 E-value=1.1e+02 Score=21.17 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=17.6
Q ss_pred ccCceecCCC---CCeeeeecccCCCCccEEEEEEeC
Q 034206 68 AKGAVCLDGT---LPGYHLHRGYGSGANSWLIQLEVS 101 (101)
Q Consensus 68 ~~gAvCLDGS---pPgYy~~~G~G~Ga~~Wli~lE~~ 101 (101)
....+-.||. .-.|++..| +|+|+||++
T Consensus 66 r~D~Vv~~Gk~y~Vtr~~~~ng------k~~i~LE~~ 96 (102)
T 2pp6_A 66 RGDRVVLRGSEFTVTRIRRFNG------KPQLTLEEN 96 (102)
T ss_dssp TTCEEEETTEEEEEEEEEEETT------EEEEEEEEC
T ss_pred CCCEEEEcCcEEEEEEEEEECC------cEEEEEEee
Confidence 3444555653 235666555 999999974
No 7
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=14.61 E-value=1.3e+02 Score=19.83 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=19.2
Q ss_pred CceecCCCCCeeeeecccCCCCccEEEEEEe
Q 034206 70 GAVCLDGTLPGYHLHRGYGSGANSWLIQLEV 100 (101)
Q Consensus 70 gAvCLDGSpPgYy~~~G~G~Ga~~Wli~lE~ 100 (101)
....-|| +|.|++=.- +|+..|++...+
T Consensus 17 ~~~~~Dg--~GL~L~V~p-sG~K~w~~rYr~ 44 (108)
T 3ju0_A 17 EYKLTDG--FGMHLLVHP-NGSKYWRLSYRF 44 (108)
T ss_dssp CEEEEEE--TTEEEEECT-TSCEEEEEEEEE
T ss_pred cEEEecC--CceEEEEEc-CCCEEEEEEEEE
Confidence 3445677 689888543 478999987654
No 8
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=13.34 E-value=1e+02 Score=18.21 Aligned_cols=15 Identities=47% Similarity=0.711 Sum_probs=9.3
Q ss_pred ecccCCCCccEEEEE
Q 034206 84 HRGYGSGANSWLIQL 98 (101)
Q Consensus 84 ~~G~G~Ga~~Wli~l 98 (101)
|.|+|+|+.+=+|..
T Consensus 2 rsgsgsgsgsklirv 16 (42)
T 3kl4_B 2 RSGSGSGSGSKLIRV 16 (42)
T ss_pred CCCCCCCCccceEEe
Confidence 557777766655543
No 9
>2nv4_A UPF0066 protein AF_0241; NESG GR27 Y241_arcfu X-RAY, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.20A {Archaeoglobus fulgidus}
Probab=13.27 E-value=43 Score=23.97 Aligned_cols=10 Identities=30% Similarity=0.321 Sum_probs=8.7
Q ss_pred cCceecCCCC
Q 034206 69 KGAVCLDGTL 78 (101)
Q Consensus 69 ~gAvCLDGSp 78 (101)
.|.-|+||||
T Consensus 108 ~glD~lDGTP 117 (147)
T 2nv4_A 108 RWLDALDGSP 117 (147)
T ss_dssp ESCCCCTTCE
T ss_pred cCccccCCCc
Confidence 5788999998
No 10
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=11.53 E-value=50 Score=24.37 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=18.5
Q ss_pred EeccccccCceecCCCCCeeeeecc
Q 034206 62 LIQSARAKGAVCLDGTLPGYHLHRG 86 (101)
Q Consensus 62 Ll~~A~~~gAvCLDGSpPgYy~~~G 86 (101)
.|+.+.+.|-.|.|-+..|.||-|.
T Consensus 188 ~L~~~e~~G~l~~D~~~eg~~y~pn 212 (218)
T 3cuq_B 188 RLLLAEKMGHLCRDDSVEGLRFYPN 212 (218)
T ss_dssp HHHHHHHTTSEEEEESSSCEEEEEC
T ss_pred HHHHHHHcCCEEEECCCCceEEehh
Confidence 3456788999999977767766554
Done!