Query 034206
Match_columns 101
No_of_seqs 108 out of 150
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 18:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034206.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034206hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fi4a2 d.58.26.2 (A:191-393) 24.6 5.5 0.0004 28.3 -0.7 21 65-85 66-86 (203)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 18.7 16 0.0012 19.5 0.6 8 71-78 6-13 (33)
3 d1rwta_ f.43.1.1 (A:) Chloroph 17.2 16 0.0012 24.9 0.5 13 73-85 22-35 (218)
4 d1ut7a_ b.143.1.1 (A:) No apic 15.0 23 0.0017 23.0 0.8 10 77-86 17-26 (166)
5 d1k3ia1 b.1.18.2 (A:538-639) G 12.2 35 0.0025 21.1 1.0 7 78-84 77-83 (102)
6 d1xl7a1 c.43.1.3 (A:11-392) Pe 12.0 33 0.0024 25.1 1.0 34 60-95 256-297 (382)
7 d1t1ua1 c.43.1.3 (A:20-401) Ch 10.3 34 0.0025 24.9 0.6 34 60-95 251-295 (382)
8 d1quba5 g.18.1.1 (A:244-326) b 9.7 41 0.003 20.7 0.7 17 69-85 49-67 (76)
9 d1sxma_ g.3.7.2 (A:) Noxiustox 9.3 49 0.0036 18.1 0.9 11 67-77 23-33 (39)
10 d1jmva_ c.26.2.4 (A:) Universa 9.0 48 0.0035 18.8 0.8 12 71-82 6-17 (140)
No 1
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.64 E-value=5.5 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.4
Q ss_pred cccccCceecCCCCCeeeeec
Q 034206 65 SARAKGAVCLDGTLPGYHLHR 85 (101)
Q Consensus 65 ~A~~~gAvCLDGSpPgYy~~~ 85 (101)
++.+--|.|||..||=.|+.+
T Consensus 66 ds~~mHA~~l~s~Ppi~Ylnd 86 (203)
T d1fi4a2 66 DSNSFHATCLDSFPPIFYMND 86 (203)
T ss_dssp HHHHHHHHHHTSSSCCCCCCH
T ss_pred hHHHHHHHHhcCCCCeEEECc
Confidence 456667899999999999864
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.73 E-value=16 Score=19.54 Aligned_cols=8 Identities=38% Similarity=0.318 Sum_probs=6.5
Q ss_pred ceecCCCC
Q 034206 71 AVCLDGTL 78 (101)
Q Consensus 71 AvCLDGSp 78 (101)
..||||-|
T Consensus 6 ~~~LDGvP 13 (33)
T d2dloa2 6 HRGLDGIP 13 (33)
T ss_dssp CCBCTTSC
T ss_pred CcccCCCc
Confidence 46899987
No 3
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=17.18 E-value=16 Score=24.90 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=10.7
Q ss_pred ecCCCCCeee-eec
Q 034206 73 CLDGTLPGYH-LHR 85 (101)
Q Consensus 73 CLDGSpPgYy-~~~ 85 (101)
=||||.||-| |+|
T Consensus 22 ~LdGs~pGD~GFDP 35 (218)
T d1rwta_ 22 YLTGEFPGDYGWDT 35 (218)
T ss_dssp TCCSCSTTCCSCCT
T ss_pred ccCCCCCCCCCcCC
Confidence 5999999877 776
No 4
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.02 E-value=23 Score=23.01 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=8.2
Q ss_pred CCCeeeeecc
Q 034206 77 TLPGYHLHRG 86 (101)
Q Consensus 77 SpPgYy~~~G 86 (101)
-||||.|+|-
T Consensus 17 LPpG~RF~PT 26 (166)
T d1ut7a_ 17 LPPGFRFYPT 26 (166)
T ss_dssp CCTTEEECCC
T ss_pred CCCccccCCC
Confidence 6899999874
No 5
>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]}
Probab=12.20 E-value=35 Score=21.12 Aligned_cols=7 Identities=57% Similarity=1.241 Sum_probs=5.9
Q ss_pred CCeeeee
Q 034206 78 LPGYHLH 84 (101)
Q Consensus 78 pPgYy~~ 84 (101)
|||||+-
T Consensus 77 PPG~YmL 83 (102)
T d1k3ia1 77 LPGYWML 83 (102)
T ss_dssp CSEEEEE
T ss_pred CCcCEEE
Confidence 8999974
No 6
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.97 E-value=33 Score=25.07 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=20.4
Q ss_pred EEEeccccccCceecCCCCCeeeee-------cc-cCCCCccEE
Q 034206 60 LTLIQSARAKGAVCLDGTLPGYHLH-------RG-YGSGANSWL 95 (101)
Q Consensus 60 ltLl~~A~~~gAvCLDGSpPgYy~~-------~G-~G~Ga~~Wl 95 (101)
|..|++| .=.+|||-..|...-. .. .|.|.|+|.
T Consensus 256 L~~Ie~A--lfvvcLD~~~~~~~~e~~~~~~~~~l~G~~~NRW~ 297 (382)
T d1xl7a1 256 LEKIQTS--LFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWG 297 (382)
T ss_dssp HHHHHHS--SCEEEECCCCCCCCSSCCHHHHHHHHSSCGGGCCT
T ss_pred HHHHHhc--eEEEeecccCCCCChHHHHHHHHhcCcCCCcccCC
Confidence 4445555 5579998766653221 11 467889884
No 7
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.29 E-value=34 Score=24.91 Aligned_cols=34 Identities=38% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEeccccccCceecCCCCCeeee---------e--cccCCCCccEE
Q 034206 60 LTLIQSARAKGAVCLDGTLPGYHL---------H--RGYGSGANSWL 95 (101)
Q Consensus 60 ltLl~~A~~~gAvCLDGSpPgYy~---------~--~G~G~Ga~~Wl 95 (101)
|..|++| .=.+|||...|.-.- + -..|+|.|+|.
T Consensus 251 L~~Ie~a--lfvv~LDd~~~~~~~e~~~~~~~l~g~~~~~~~~NRW~ 295 (382)
T d1t1ua1 251 LDMIERC--ICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWY 295 (382)
T ss_dssp HHHHHTC--SCEEEECCCCSSCCCHHHHHHHHHHTTSTTTTTTSCCT
T ss_pred HHHHHhc--eEEEEeCCCCCCChhhHHHHHHHhhCCCCCCCCccccC
Confidence 4455555 567999987774321 1 12446789984
No 8
>d1quba5 g.18.1.1 (A:244-326) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.67 E-value=41 Score=20.73 Aligned_cols=17 Identities=35% Similarity=0.743 Sum_probs=11.7
Q ss_pred cCceecCCCC--Ceeeeec
Q 034206 69 KGAVCLDGTL--PGYHLHR 85 (101)
Q Consensus 69 ~gAvCLDGSp--PgYy~~~ 85 (101)
..|.|.||+. |+=|-.+
T Consensus 49 ~~~qC~DG~l~iP~CfkE~ 67 (76)
T d1quba5 49 EDAQCIDGTIEVPKCFKEH 67 (76)
T ss_dssp EEEECBTTBCCCCTTCCCC
T ss_pred ccceEecCeecCchhhcCC
Confidence 4679999974 5555544
No 9
>d1sxma_ g.3.7.2 (A:) Noxiustoxin {Mexican scorpion (Centruroides noxius) [TaxId: 6878]}
Probab=9.34 E-value=49 Score=18.06 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=8.4
Q ss_pred cccCceecCCC
Q 034206 67 RAKGAVCLDGT 77 (101)
Q Consensus 67 ~~~gAvCLDGS 77 (101)
...||.|++|-
T Consensus 23 ~~ag~kcmngk 33 (39)
T d1sxma_ 23 SSAGAKCMNGK 33 (39)
T ss_dssp TCCCEEEETTE
T ss_pred ccccccccCCc
Confidence 34699999984
No 10
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}
Probab=9.01 E-value=48 Score=18.81 Aligned_cols=12 Identities=17% Similarity=-0.050 Sum_probs=9.1
Q ss_pred ceecCCCCCeee
Q 034206 71 AVCLDGTLPGYH 82 (101)
Q Consensus 71 AvCLDGSpPgYy 82 (101)
-+|+|||+.+..
T Consensus 6 Lv~vD~s~~s~~ 17 (140)
T d1jmva_ 6 LVAVDLSEESPI 17 (140)
T ss_dssp EEEECCSTTHHH
T ss_pred EEEECCCHHHHH
Confidence 478999988654
Done!