Query 034209
Match_columns 101
No_of_seqs 111 out of 221
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 10:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06394 PBP1_iGluR_Kainate_KA1 98.8 6.6E-09 1.4E-13 82.9 4.4 50 44-93 1-51 (333)
2 cd06391 PBP1_iGluR_delta_2 N-t 98.3 9.3E-07 2E-11 71.9 4.0 51 44-98 1-54 (400)
3 cd06392 PBP1_iGluR_delta_1 N-t 98.1 4.7E-06 1E-10 68.6 4.8 52 44-98 1-54 (400)
4 cd06382 PBP1_iGluR_Kainate N-t 98.0 7.2E-06 1.6E-10 62.4 4.8 52 44-97 1-54 (327)
5 cd06380 PBP1_iGluR_AMPA N-term 97.8 1.9E-05 4.1E-10 61.6 3.9 52 44-98 1-54 (382)
6 cd06366 PBP1_GABAb_receptor Li 97.8 4.7E-05 1E-09 58.3 5.9 54 44-97 1-56 (350)
7 cd06370 PBP1_Speract_GC_like L 97.7 6.4E-05 1.4E-09 59.8 5.0 56 43-98 1-61 (404)
8 cd06346 PBP1_ABC_ligand_bindin 97.7 6.4E-05 1.4E-09 57.1 4.6 54 44-97 1-57 (312)
9 cd06368 PBP1_iGluR_non_NMDA_li 97.7 7.7E-05 1.7E-09 56.2 4.8 51 44-97 1-53 (324)
10 cd06358 PBP1_NHase Type I peri 97.6 0.00015 3.3E-09 55.4 6.1 53 44-96 1-56 (333)
11 PRK15404 leucine ABC transport 97.6 0.0002 4.3E-09 56.7 6.9 57 40-96 23-82 (369)
12 cd06348 PBP1_ABC_ligand_bindin 97.6 0.00014 3.1E-09 55.5 5.6 53 44-96 1-56 (344)
13 cd06393 PBP1_iGluR_Kainate_Glu 97.5 0.00021 4.6E-09 56.4 5.7 55 42-96 2-62 (384)
14 cd06357 PBP1_AmiC Periplasmic 97.5 0.00028 6.1E-09 55.2 5.8 53 44-96 1-56 (360)
15 cd06331 PBP1_AmiC_like Type I 97.4 0.00037 8E-09 53.1 5.9 53 44-96 1-56 (333)
16 cd06344 PBP1_ABC_ligand_bindin 97.4 0.00037 7.9E-09 53.3 5.8 53 44-96 1-55 (332)
17 cd06345 PBP1_ABC_ligand_bindin 97.4 0.00055 1.2E-08 52.4 6.1 53 44-96 1-56 (344)
18 cd06343 PBP1_ABC_ligand_bindin 97.4 0.00061 1.3E-08 52.4 6.3 56 40-95 4-62 (362)
19 TIGR03407 urea_ABC_UrtA urea A 97.3 0.00054 1.2E-08 53.6 6.0 54 43-96 1-57 (359)
20 cd06347 PBP1_ABC_ligand_bindin 97.3 0.00057 1.2E-08 51.2 5.8 53 44-96 1-56 (334)
21 cd06356 PBP1_Amide_Urea_BP_lik 97.3 0.00057 1.2E-08 52.7 5.9 52 44-95 1-55 (334)
22 PF13458 Peripla_BP_6: Peripla 97.3 0.00056 1.2E-08 51.4 5.7 55 42-96 1-58 (343)
23 cd06355 PBP1_FmdD_like Peripla 97.3 0.00066 1.4E-08 52.7 6.0 53 44-96 1-56 (348)
24 cd06330 PBP1_Arsenic_SBP_like 97.3 0.00074 1.6E-08 51.5 6.2 52 44-95 1-55 (346)
25 cd06349 PBP1_ABC_ligand_bindin 97.2 0.00077 1.7E-08 51.4 5.5 53 44-96 1-56 (340)
26 cd06333 PBP1_ABC-type_HAAT_lik 97.1 0.0011 2.4E-08 49.8 5.6 51 44-95 1-54 (312)
27 cd04509 PBP1_ABC_transporter_G 97.1 0.0015 3.3E-08 46.7 5.9 52 44-95 1-55 (299)
28 cd06352 PBP1_NPR_GC_like Ligan 97.1 0.00092 2E-08 51.9 5.1 53 44-96 1-57 (389)
29 cd06342 PBP1_ABC_LIVBP_like Ty 97.1 0.0012 2.7E-08 49.5 5.6 53 44-96 1-56 (334)
30 cd06338 PBP1_ABC_ligand_bindin 97.1 0.0016 3.5E-08 49.5 6.1 53 44-96 1-60 (345)
31 TIGR03669 urea_ABC_arch urea A 97.1 0.0014 3.1E-08 52.5 5.9 54 43-96 1-57 (374)
32 cd06385 PBP1_NPR_A Ligand-bind 97.1 0.001 2.2E-08 52.6 5.0 50 44-93 1-55 (405)
33 cd06329 PBP1_SBP_like_3 Peripl 97.0 0.0018 4E-08 49.8 5.7 53 44-96 1-56 (342)
34 cd06328 PBP1_SBP_like_2 Peripl 96.9 0.0022 4.8E-08 49.4 5.8 54 44-97 1-58 (333)
35 cd06268 PBP1_ABC_transporter_L 96.9 0.0027 5.8E-08 45.4 5.6 52 44-95 1-55 (298)
36 cd06340 PBP1_ABC_ligand_bindin 96.9 0.0023 5E-08 49.4 5.5 53 44-96 1-59 (347)
37 COG0683 LivK ABC-type branched 96.8 0.0043 9.3E-08 49.2 6.6 56 41-96 9-67 (366)
38 cd06334 PBP1_ABC_ligand_bindin 96.8 0.002 4.3E-08 50.7 4.5 53 44-96 1-56 (351)
39 cd06335 PBP1_ABC_ligand_bindin 96.8 0.0031 6.6E-08 48.8 5.4 53 44-96 1-56 (347)
40 cd06336 PBP1_ABC_ligand_bindin 96.8 0.0028 6.1E-08 49.0 5.0 53 44-96 1-60 (347)
41 cd06372 PBP1_GC_G_like Ligand- 96.7 0.0027 5.8E-08 49.9 4.9 53 45-97 2-58 (391)
42 cd06374 PBP1_mGluR_groupI Liga 96.7 0.0044 9.5E-08 50.6 6.1 57 40-96 7-81 (472)
43 cd06350 PBP1_GPCR_family_C_lik 96.7 0.0045 9.8E-08 47.0 5.5 53 45-97 2-68 (348)
44 cd06367 PBP1_iGluR_NMDA N-term 96.7 0.0023 5E-08 49.6 3.9 52 42-97 2-53 (362)
45 cd06327 PBP1_SBP_like_1 Peripl 96.6 0.0029 6.3E-08 48.3 4.4 51 44-96 1-55 (334)
46 cd06326 PBP1_STKc_like Type I 96.6 0.0074 1.6E-07 45.5 6.3 53 43-95 1-56 (336)
47 cd06341 PBP1_ABC_ligand_bindin 96.6 0.0057 1.2E-07 46.5 5.5 52 44-95 1-55 (341)
48 cd06383 PBP1_iGluR_AMPA_Like N 96.5 0.0038 8.1E-08 50.2 4.2 44 52-98 7-56 (368)
49 KOG1055 GABA-B ion channel rec 96.4 0.008 1.7E-07 54.8 6.4 55 43-97 42-102 (865)
50 cd06362 PBP1_mGluR Ligand bind 96.4 0.0092 2E-07 47.8 5.8 43 54-96 27-70 (452)
51 cd06351 PBP1_iGluR_N_LIVBP_lik 96.3 0.0072 1.6E-07 44.9 4.7 51 44-97 1-53 (328)
52 cd06364 PBP1_CaSR Ligand-bindi 96.3 0.016 3.5E-07 48.5 7.0 58 39-96 9-89 (510)
53 cd06371 PBP1_sensory_GC_DEF_li 96.2 0.011 2.3E-07 47.1 5.1 53 44-96 1-57 (382)
54 cd06361 PBP1_GPC6A_like Ligand 96.1 0.014 3E-07 47.3 5.7 43 54-97 32-75 (403)
55 cd06365 PBP1_Pheromone_recepto 95.9 0.023 5.1E-07 46.7 6.1 43 54-96 36-79 (469)
56 cd06376 PBP1_mGluR_groupIII Li 95.9 0.024 5.3E-07 46.1 6.0 51 42-92 2-66 (463)
57 cd06373 PBP1_NPR_like Ligand b 95.8 0.018 3.9E-07 45.3 5.0 53 44-96 1-62 (396)
58 cd06363 PBP1_Taste_receptor Li 95.8 0.032 7E-07 44.5 6.4 37 54-90 39-76 (410)
59 cd06375 PBP1_mGluR_groupII Lig 95.5 0.036 7.9E-07 45.6 5.9 43 54-96 27-70 (458)
60 cd06359 PBP1_Nba_like Type I p 95.4 0.052 1.1E-06 41.5 5.9 50 44-95 1-53 (333)
61 cd06379 PBP1_iGluR_NMDA_NR1 N- 94.9 0.091 2E-06 41.2 6.2 30 39-73 16-45 (377)
62 cd06339 PBP1_YraM_LppC_lipopro 94.9 0.038 8.2E-07 42.9 4.0 45 44-95 1-48 (336)
63 cd06381 PBP1_iGluR_delta_like 94.8 0.04 8.8E-07 44.2 4.0 52 44-98 1-54 (363)
64 cd06269 PBP1_glutamate_recepto 94.6 0.1 2.3E-06 37.3 5.5 53 44-96 1-56 (298)
65 PF13433 Peripla_BP_5: Peripla 94.6 0.072 1.6E-06 44.4 5.2 54 43-96 1-57 (363)
66 cd06386 PBP1_NPR_C_like Ligand 94.5 0.064 1.4E-06 42.7 4.4 38 55-92 15-53 (387)
67 cd06360 PBP1_alkylbenzenes_lik 94.3 0.14 3E-06 38.6 5.7 50 44-95 1-53 (336)
68 cd06332 PBP1_aromatic_compound 94.1 0.17 3.7E-06 37.8 5.9 50 44-95 1-53 (333)
69 cd06337 PBP1_ABC_ligand_bindin 93.2 0.15 3.2E-06 39.8 4.3 54 44-97 1-59 (357)
70 cd06384 PBP1_NPR_B Ligand-bind 90.9 0.36 7.8E-06 38.3 4.1 35 58-92 19-54 (399)
71 PF01094 ANF_receptor: Recepto 86.2 1.2 2.5E-05 33.1 3.9 32 59-90 2-34 (348)
72 cd06377 PBP1_iGluR_NMDA_NR3 N- 84.5 2.9 6.4E-05 34.8 5.8 52 41-96 17-70 (382)
73 TIGR03863 PQQ_ABC_bind ABC tra 79.4 4 8.7E-05 32.7 4.7 41 53-94 7-47 (347)
74 cd06387 PBP1_iGluR_AMPA_GluR3 78.5 3.6 7.9E-05 33.5 4.3 50 44-96 1-53 (372)
75 cd01391 Periplasmic_Binding_Pr 76.7 6.5 0.00014 26.9 4.5 42 44-92 1-44 (269)
76 cd06388 PBP1_iGluR_AMPA_GluR4 70.2 9.5 0.00021 30.6 4.7 49 44-95 1-52 (371)
77 cd06390 PBP1_iGluR_AMPA_GluR1 56.9 12 0.00027 30.0 3.1 28 44-74 1-28 (364)
78 PF07271 Cytadhesin_P30: Cytad 51.4 12 0.00027 30.7 2.3 20 1-20 1-20 (279)
79 cd06389 PBP1_iGluR_AMPA_GluR2 45.0 35 0.00076 27.2 3.9 45 44-95 1-46 (370)
80 cd06325 PBP1_ABC_uncharacteriz 44.8 68 0.0015 23.1 5.1 46 44-92 1-46 (281)
81 TIGR03061 pip_yhgE_Nterm YhgE/ 43.0 1E+02 0.0022 21.8 5.7 36 28-63 29-72 (164)
82 PRK10936 TMAO reductase system 42.1 1E+02 0.0022 24.0 6.0 30 41-70 45-75 (343)
83 cd01536 PBP1_ABC_sugar_binding 37.0 77 0.0017 22.3 4.3 26 44-69 1-27 (267)
84 PF15583 Imm41: Immunity prote 33.5 30 0.00064 26.3 1.7 24 54-77 110-133 (158)
85 PTZ00441 sporozoite surface pr 32.2 3.2E+02 0.007 24.6 8.2 32 41-72 41-77 (576)
86 PRK10355 xylF D-xylose transpo 30.3 1.7E+02 0.0038 22.7 5.7 32 40-71 23-55 (330)
87 PF14967 FAM70: FAM70 protein 29.3 27 0.00059 29.3 1.0 54 2-60 19-77 (327)
88 KOG1611 Predicted short chain- 25.2 3.1E+02 0.0068 22.3 6.3 54 16-72 121-187 (249)
89 PRK15395 methyl-galactoside AB 25.2 3.2E+02 0.007 21.1 6.8 31 40-70 22-53 (330)
90 PF03402 V1R: Vomeronasal orga 23.8 1.3E+02 0.0029 24.0 4.0 22 1-22 85-109 (265)
91 cd01480 vWA_collagen_alpha_1-V 21.7 3E+02 0.0066 19.5 6.5 31 42-72 2-36 (186)
92 cd06301 PBP1_rhizopine_binding 20.4 2E+02 0.0044 20.6 4.1 26 44-69 1-27 (272)
No 1
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=98.77 E-value=6.6e-09 Score=82.93 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=45.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCchh
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQIK 93 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~~ 93 (101)
+||+|||.+|.+|+.++.|++||++|||++...++ ++|+++++|.++|+-
T Consensus 1 ~iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~ 51 (333)
T cd06394 1 RIAAILDDPMECGRGERLALALARERINRAPERLGKARVEVDIFELLRDSQ 51 (333)
T ss_pred CceeeecCCccccHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccCh
Confidence 58999999999999999999999999999876654 799999999998874
No 2
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=98.25 E-value=9.3e-07 Score=71.86 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=42.2
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-e--EEEEEeecCCCchhhhhcc
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-T--RLVLHSRDSQAQIKFFSQK 98 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~-T--rL~L~~rDS~~d~~~aa~~ 98 (101)
+||+|||.+|+.|++ |++||++|+|+++..+. + ++.++..|+ +|+|.|+.+
T Consensus 1 ~IGaif~~~s~~~~~---Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~-~d~f~a~~~ 54 (400)
T cd06391 1 HIGAIFDESAKKDDE---VFRMAVADLNQNNEILQTEKITVSVTFVDG-NNPFQAVQE 54 (400)
T ss_pred CcceeeccCCchHHH---HHHHHHHHhcCCccccCCCcceEEEEEeeC-CCcHHHHHH
Confidence 489999999988864 99999999998886663 6 556699999 499988754
No 3
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=98.08 E-value=4.7e-06 Score=68.62 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=45.4
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEe-ecCCCchhhhhcc
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-TRLVLHS-RDSQAQIKFFSQK 98 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~-rDS~~d~~~aa~~ 98 (101)
.||+|||-++. .+..|.++|++|||.+.+.++ |+|++++ +|+++|+|+++.+
T Consensus 1 ~iG~if~~~~~---~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ 54 (400)
T cd06392 1 HIGAIFEENAA---KDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQE 54 (400)
T ss_pred CeeeccCCCch---HHHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHH
Confidence 48999998773 367999999999998887764 9999999 9999999999876
No 4
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=98.04 E-value=7.2e-06 Score=62.37 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=46.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCC-Cchhhhhc
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQ-AQIKFFSQ 97 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~-~d~~~aa~ 97 (101)
+||+||++ ..|+..+.|+++|++++|++...+ +.+|.+.++|+. +|+..+..
T Consensus 1 ~iG~i~~~--~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~ 54 (327)
T cd06382 1 RIGAIFDD--DDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTK 54 (327)
T ss_pred CeEEEecC--CCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHH
Confidence 59999999 889999999999999999988766 488999999998 88877653
No 5
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=97.83 E-value=1.9e-05 Score=61.59 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=44.6
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCC-Cchhhhhcc
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQ-AQIKFFSQK 98 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~-~d~~~aa~~ 98 (101)
+||+|||.+ ++.++.|+++|++|+|...+.+ +.+|.+++++.+ +|+++++-+
T Consensus 1 ~iG~if~~~---~~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~ 54 (382)
T cd06380 1 PIGGLFDVD---EDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNA 54 (382)
T ss_pred CceeEECCC---ChHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHH
Confidence 489999999 6899999999999999876654 489999999998 699988754
No 6
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=97.82 E-value=4.7e-05 Score=58.30 Aligned_cols=54 Identities=39% Similarity=0.554 Sum_probs=47.6
Q ss_pred EEEEEEecC-CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhhc
Q 034209 44 HVGVILDMR-SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 44 ~VGvIlDl~-S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa~ 97 (101)
+||++++++ +..|+..+.++++|++++|+....+ +.+|++.++|+++|+..|..
T Consensus 1 ~IG~~~p~sGa~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~~~a~~ 56 (350)
T cd06366 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAAS 56 (350)
T ss_pred CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCHHHHHH
Confidence 599999999 9999999999999999999986333 47899999999999977654
No 7
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=97.69 E-value=6.4e-05 Score=59.75 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=48.2
Q ss_pred EEEEEEEecC----CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhhcc
Q 034209 43 VHVGVILDMR----SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFSQK 98 (101)
Q Consensus 43 V~VGvIlDl~----S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa~~ 98 (101)
++||++..++ +..|+..+.|+++|++++|++...+ +.+|++.++|++||+..|+-+
T Consensus 1 i~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~~~~~~a~~~ 61 (404)
T cd06370 1 IKVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRA 61 (404)
T ss_pred CeeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecCCChHHHHHH
Confidence 5799999874 4779999999999999999987665 589999999999999887643
No 8
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.68 E-value=6.4e-05 Score=57.11 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=46.8
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhhc
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa~ 97 (101)
+||++.+++. ..|+..+.++++|++++|+.....+.+|++.++|+++||-.+..
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~iel~~~D~~~~p~~a~~ 57 (312)
T cd06346 1 KIGILLPLTGDLASYGPPMADAAELAVKEVNAAGGVLGEPVTLVTADTQTDPAAGVA 57 (312)
T ss_pred CceeeccCCCchhhcChhHHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCHHHHHH
Confidence 5899999985 56888999999999999998766668999999999999977653
No 9
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=97.66 E-value=7.7e-05 Score=56.23 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=43.8
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecC-CCchhhhhc
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDS-QAQIKFFSQ 97 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS-~~d~~~aa~ 97 (101)
+||+|++.++ +..+.|+++|++++|++...++ .+|.+.+.|+ .+|+..+..
T Consensus 1 ~iG~i~~~~~---~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~ 53 (324)
T cd06368 1 RIGAIFDEDA---RQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTN 53 (324)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHH
Confidence 5999999999 9999999999999999887664 6899999997 588877653
No 10
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=97.63 E-value=0.00015 Score=55.41 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=46.6
Q ss_pred EEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S~---iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++.+ .|+..+.++++|++++|+.....+.++++..+|+++||-.+.
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~G~~i~l~~~D~~~~p~~a~ 56 (333)
T cd06358 1 RIGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGGILGREVELVIVDDGSPPAEAA 56 (333)
T ss_pred CeEEEecCcCchhhcchhHHHHHHHHHHHHHhcCCcCCcEEEEEEECCCCChHHHH
Confidence 58999998765 899999999999999998876667899999999999986653
No 11
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=97.62 E-value=0.0002 Score=56.65 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=50.0
Q ss_pred CceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
..+++||++.+++ +..|+..+.++++|++++|+.....+.+++|.++|++++|-.|.
T Consensus 23 ~~~I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GGi~G~~ielv~~D~~~~p~~a~ 82 (369)
T PRK15404 23 ADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDACDPKQAV 82 (369)
T ss_pred CCceEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCCCHHHHH
Confidence 4579999999998 45799999999999999999877777899999999999996654
No 12
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.60 E-value=0.00014 Score=55.51 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=47.0
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++ +..|+..+.++++|++++|+.....+.++++.++|++++|-.+.
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi~G~~v~lv~~D~~~~p~~a~ 56 (344)
T cd06348 1 PLGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGVNGRPIKLVIEDSGGDEAEAI 56 (344)
T ss_pred CeeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCcCCcEEEEEEecCCCChHHHH
Confidence 589999999 46799999999999999999777667899999999999996654
No 13
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=97.52 E-value=0.00021 Score=56.42 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=45.1
Q ss_pred eEEEEEEEecC----CcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCC-chhhhh
Q 034209 42 EVHVGVILDMR----SWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQA-QIKFFS 96 (101)
Q Consensus 42 ~V~VGvIlDl~----S~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~-d~~~aa 96 (101)
+++||+|++.. +..|+..+.||++|++++|++...++ .+|...+++..+ |++.++
T Consensus 2 ~i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~ 62 (384)
T cd06393 2 VIRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEAT 62 (384)
T ss_pred eeeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHH
Confidence 58999999943 56789999999999999999887764 889999999665 665443
No 14
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=97.47 E-value=0.00028 Score=55.17 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=47.7
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++ +..|+..+.+++||++++|+.....+.+++|..+|++++|-.+.
T Consensus 1 kIG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GGi~G~~ielv~~D~~~~p~~a~ 56 (360)
T cd06357 1 RVGVLFSRTGVTAAIERSQRNGALLAIEEINAAGGVLGRELEPVEYDPGGDPDAYR 56 (360)
T ss_pred CeEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCCCCCeEEEEEEECCCCCHHHHH
Confidence 599999998 78999999999999999999877777899999999999996654
No 15
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=97.43 E-value=0.00037 Score=53.15 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=46.3
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++ +..|+..+.++++|++++|+.....+.++++.++|+++||-.+.
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi~G~~i~l~~~D~~~~p~~a~ 56 (333)
T cd06331 1 KIGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGILGRPLELVVEDPASDPAFAA 56 (333)
T ss_pred CeEEEecCCCccccccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCCCHHHHH
Confidence 489999987 45899999999999999998876667899999999999986654
No 16
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=97.42 E-value=0.00037 Score=53.29 Aligned_cols=53 Identities=6% Similarity=-0.030 Sum_probs=46.7
Q ss_pred EEEEEEecC--CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR--SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~--S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++ +..|+....++++|++++|+.....+.+++|.++|+++||-.+.
T Consensus 1 ~iG~~~p~sG~a~~G~~~~~g~~lA~~~iNa~ggi~G~~ielv~~D~~~~p~~a~ 55 (332)
T cd06344 1 TIAVVVPIGKNPNLAEEILRGVAQAQTEINLQGGINGKLLKVVIANDGNDPEIAK 55 (332)
T ss_pred CeEEEEecCCChhhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCCCChHHHH
Confidence 489999988 78999999999999999998776667899999999999985553
No 17
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.36 E-value=0.00055 Score=52.44 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=45.8
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++ +..|+....++++|++++|+.....+.++++.++|+++|+-.+.
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~ggi~g~~v~l~~~D~~~~~~~a~ 56 (344)
T cd06345 1 KIGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGILGRKVELVFEDTEGSPEDAV 56 (344)
T ss_pred CeeEEEecCCcccccCHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Confidence 589999997 57899999999999999998765556789999999999986543
No 18
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.35 E-value=0.00061 Score=52.39 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=49.3
Q ss_pred CceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 40 ~~~V~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+.+|+||++++++ ...|+..+.++++|++++|+.....+.+|+|.++|+++|+-.+
T Consensus 4 ~~~i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gGi~G~~i~l~~~D~~~~~~~a 62 (362)
T cd06343 4 DTEIKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGGINGRKIELIVEDDGYSPPKT 62 (362)
T ss_pred CceEEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCCcCCeEEEEEEecCCCChHHH
Confidence 5689999999998 4689999999999999999977666789999999999988554
No 19
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=97.34 E-value=0.00054 Score=53.55 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=47.1
Q ss_pred EEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 43 VHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 43 V~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
|+||++..++ +..|+..+.++++|++++|+.....+.+++|..+|++++|=.|.
T Consensus 1 I~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GGi~G~~i~l~~~Dd~~~p~~a~ 57 (359)
T TIGR03407 1 IKVGILHSLSGTMAISETTLKDAELMAIEEINASGGVLGKKIEPVVEDGASDWPTFA 57 (359)
T ss_pred CeEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCCCCHHHHH
Confidence 5899999886 57889899999999999999876667899999999999986553
No 20
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.34 E-value=0.00057 Score=51.19 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=45.4
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++. ..|+....++++|++++|++....+.+|++.++|+++|+-.+.
T Consensus 1 ~iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~l~~~~~D~~~~~~~~~ 56 (334)
T cd06347 1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGGVLGKKIELVVEDNKSDKEEAA 56 (334)
T ss_pred CeeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCCChHHHH
Confidence 5899999986 5678888999999999999866556899999999999987664
No 21
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=97.33 E-value=0.00057 Score=52.69 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=46.2
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||++.+++ +..|+..+.++++|++++|+.....+.+++|.++|++++|-.+
T Consensus 1 ~IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gGi~Gr~v~lv~~D~~~~p~~a 55 (334)
T cd06356 1 KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGGILGREVELVDYDTQSDNERY 55 (334)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCCCCceEEEEEECCCCCHHHH
Confidence 589999999 5779999999999999999877766789999999999999554
No 22
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=97.33 E-value=0.00056 Score=51.41 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=44.2
Q ss_pred eEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 42 EVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 42 ~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+++||++++++. ..|+....++++|++++|+.-...+.++.|.++|+++|+-.+.
T Consensus 1 ~i~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~a~ 58 (343)
T PF13458_consen 1 PIKIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGINGRKIELVVYDDGGDPAQAV 58 (343)
T ss_dssp SEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TT-HHHHH
T ss_pred CEEEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCcCCccceeeeccCCCChHHHH
Confidence 479999999987 5688899999999999999754556899999999999886654
No 23
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=97.30 E-value=0.00066 Score=52.72 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=45.9
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++ +..|+..+.+++||++++|+.....+.+++|..+|+++||-.|.
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GGi~G~~ielv~~D~~~~p~~a~ 56 (348)
T cd06355 1 KVGILHSLSGTMAISETTLKDAELLAIEEINAAGGVLGRKIEAVVEDGASDWPTFA 56 (348)
T ss_pred CeEEEEcCCCcccccchhHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCCCCHHHHH
Confidence 589999887 46799999999999999999877667899999999999986554
No 24
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=97.30 E-value=0.00074 Score=51.51 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=44.9
Q ss_pred EEEEEEecCCcc---hHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMRSWS---GKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~S~i---GK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||++++++.+. |+....++++|++|+|......+.++.+.++|+++|+..+
T Consensus 1 ~iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~v~~~~~D~~~~~~~a 55 (346)
T cd06330 1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGGIGGRKIELVVRDEAGKPDEA 55 (346)
T ss_pred CeeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCCcCCeEEEEEEecCCCCHHHH
Confidence 589999998754 8889999999999999887666689999999999998654
No 25
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.22 E-value=0.00077 Score=51.41 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=46.8
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++ +..|+..+.++++|++++|+.....+.+|++.++|+++++-.+.
T Consensus 1 ~IG~~~plsG~~a~~G~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~a~ 56 (340)
T cd06349 1 LIGVAGPLTGDNAQYGTQWKRAFDLALDEINAAGGVGGRPLNIVFEDSKSDPRQAV 56 (340)
T ss_pred CeeEEecCCCcchhcCccHHHHHHHHHHHHHhhCCcCCeEEEEEEeCCCCChHHHH
Confidence 589999997 57899999999999999999877767899999999999986654
No 26
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=97.13 E-value=0.0011 Score=49.81 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=44.1
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||++++++ +..|+....++++|++++|+ ....+.++.+.++|+++|+-.+
T Consensus 1 ~IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~-ggi~g~~i~l~~~d~~~~~~~a 54 (312)
T cd06333 1 KIGAILSLTGPAASLGIPEKKTLELLPDEINA-GGIGGEKVELIVLDDGSDPTKA 54 (312)
T ss_pred CeeEEeecCCcchhhCHHHHHHHHHHHHHHhc-CCcCCeEEEEEEecCCCCHHHH
Confidence 589999988 67889999999999999998 5555688999999999998544
No 27
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=97.12 E-value=0.0015 Score=46.69 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=44.2
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||+|++.+. ..|+....++++|++++|+.....+.++.+.++|+.+|+-.+
T Consensus 1 ~IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~ 55 (299)
T cd04509 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGGIPGRKLELVIYDDQSDPARA 55 (299)
T ss_pred CeeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHH
Confidence 5999999984 688999999999999999876444588999999999987544
No 28
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=97.12 E-value=0.00092 Score=51.90 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=45.3
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++ +..|+..+.++++|+|++|+....+ +.+|++.++|+++++-.|.
T Consensus 1 kvG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~~~~a~ 57 (389)
T cd06352 1 TVGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECSESVAL 57 (389)
T ss_pred CeEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCchhhhH
Confidence 489999886 5799999999999999999987443 5789999999999986665
No 29
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=97.11 E-value=0.0012 Score=49.50 Aligned_cols=53 Identities=25% Similarity=0.183 Sum_probs=45.6
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++ +..|+....++++|++++|+.....+.++.+.++|+++++..+.
T Consensus 1 ~iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~i~~~~~D~~~~~~~~~ 56 (334)
T cd06342 1 KIGVAGPLTGPNAALGKDIKNGAQLAVEDINAKGGGKGVKLELVVEDDQADPKQAV 56 (334)
T ss_pred CeeEeccCCCcchhhcHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCChHHHH
Confidence 489999886 47889999999999999999865556889999999999997664
No 30
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=97.09 E-value=0.0016 Score=49.52 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=44.1
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCC----CceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNT----HYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~----~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++ +..|+..+.++++|++++|+... ..+.++++..+|+++|+-.+.
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D~~~~~~~a~ 60 (345)
T cd06338 1 RIGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSNPARAA 60 (345)
T ss_pred CeeEEEeCCCccccccHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEecCCCCHHHHH
Confidence 589999988 67799999999999999998542 234789999999999986553
No 31
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=97.07 E-value=0.0014 Score=52.48 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=47.8
Q ss_pred EEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 43 VHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 43 V~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
|+||++..++ +..|+..+.++++|++++|+.-...+.+++|..+|++++|-.|.
T Consensus 1 IkIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GGi~Gr~ielv~~D~~~~p~~a~ 57 (374)
T TIGR03669 1 IKLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGGILGRQIELIDPDPQSDNERYQ 57 (374)
T ss_pred CEEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCCCCCceeEEEEeCCCCCHHHHH
Confidence 5899999998 57899999999999999998877777899999999999986654
No 32
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=97.07 E-value=0.001 Score=52.58 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=41.3
Q ss_pred EEEEEEecCCc---ch-HHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchh
Q 034209 44 HVGVILDMRSW---SG-KISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIK 93 (101)
Q Consensus 44 ~VGvIlDl~S~---iG-K~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~ 93 (101)
+||+++.++.+ .| +....|+++|++|+|++...+ +.+|.+..+|+++++-
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~~D~~~~~~ 55 (405)
T cd06385 1 TLAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVLGSSENKEG 55 (405)
T ss_pred CeeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEEccccccCC
Confidence 58999976654 65 888899999999999987766 5889999999976553
No 33
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=96.99 E-value=0.0018 Score=49.76 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=45.7
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++- ..|+..+.++++|++|+|+.....+.+++|.++|+++|+-.+.
T Consensus 1 ~IG~l~p~sG~~a~~G~~~~~g~~~a~~~iN~~GGi~G~~i~l~~~D~~~~p~~a~ 56 (342)
T cd06329 1 KIGVIDPLSGPFASLGELVRRGLQLAADEINAKGGVDGRPIELVEEDNKGSPQEAL 56 (342)
T ss_pred CeeeeccCCCCcccccHHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCChHHHH
Confidence 4889988864 6899999999999999999776667899999999999987654
No 34
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=96.94 E-value=0.0022 Score=49.39 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=44.7
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCC-ceeEEEEEeecCCCchhhhhc
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTH-YKTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~-~~TrL~L~~rDS~~d~~~aa~ 97 (101)
+||++.+++ +..|+..+.++++|++++|+.+.. .+.+++|..+|++++|-.+..
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~ggi~G~~i~lv~~D~~~~p~~a~~ 58 (333)
T cd06328 1 KIGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQVDGRPIEVIVKDDAGNPEVAVS 58 (333)
T ss_pred CeEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCCcCCEEEEEEEecCCCChHHHHH
Confidence 589999998 568999999999999999654433 357999999999999977653
No 35
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=96.92 E-value=0.0027 Score=45.39 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=44.3
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||++++.+ +..|+....++++|++++|+.....+.++.+.++|+++|+-.+
T Consensus 1 ~ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~gg~~g~~v~~~~~d~~~~~~~~ 55 (298)
T cd06268 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAGGILGRKIELVVEDTQGDPEAA 55 (298)
T ss_pred CeeeeecCcCchhhcChhHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHH
Confidence 489999987 6899999999999999999876444588999999999987543
No 36
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.89 E-value=0.0023 Score=49.44 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=44.6
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCC---CceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNT---HYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~---~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++. ..|+..+.++++|++++|+... ..+.+|++.++|+++++..+.
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D~~~~~~~a~ 59 (347)
T cd06340 1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGA 59 (347)
T ss_pred CceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEecCCCCHHHHH
Confidence 5899999974 6889999999999999998763 235799999999999987654
No 37
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0043 Score=49.18 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=49.6
Q ss_pred ceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 41 DEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 41 ~~V~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
..|+||++..++ ...|+..+.+.++|++|+|+.-...+.+|++.++|..+||-+++
T Consensus 9 ~~IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Ggi~G~~velv~~D~~~dp~~a~ 67 (366)
T COG0683 9 DTIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGGILGRKVELVVEDDASDPATAA 67 (366)
T ss_pred CceEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCCcCCceEEEEEecCCCChHHHH
Confidence 479999999984 37899999999999999999888776569999999999998776
No 38
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.79 E-value=0.002 Score=50.72 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=46.0
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++ +..|+..+.++++|++++|+.-...+.+|+|.++|+++||-.+.
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iNa~GGI~Gr~ielv~~D~~~~p~~a~ 56 (351)
T cd06334 1 KVGLLADRTGPTAFVGIPYAAGFADYFKYINEDGGINGVKLEWEECDTGYEVPRGV 56 (351)
T ss_pred CCCccccCCCcccccChhHHHHHHHHHHHHHHcCCcCCeEEEEEEecCCCCcHHHH
Confidence 588888887 68899999999999999998866667899999999999986654
No 39
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.78 E-value=0.0031 Score=48.76 Aligned_cols=53 Identities=23% Similarity=0.161 Sum_probs=46.0
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++- ..|+..+.++++|++++|......+.++++.++|.++||-.+.
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~G~~i~lv~~D~~~~p~~a~ 56 (347)
T cd06335 1 KIGVDADFSGGSAPSGVSIRRGARLAIDEINAAGGVLGRKLELVERDDRGNPARGL 56 (347)
T ss_pred CeeeecCccCccccccHHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCCcHHHH
Confidence 5899998877 7899999999999999999876667889999999999886553
No 40
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.76 E-value=0.0028 Score=48.98 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=44.1
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCc--e--eEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHY--K--TRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~--~--TrL~L~~rDS~~d~~~aa 96 (101)
+||++.+++. ..|+..+.++++|+++.|+..... + .++++.++|+++||-.+.
T Consensus 1 ~IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~~~~p~~a~ 60 (347)
T cd06336 1 KIGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAA 60 (347)
T ss_pred CcceeccCcCcccccChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecCCCCHHHHH
Confidence 4899998884 578999999999999999876544 2 479999999999987664
No 41
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=96.75 E-value=0.0027 Score=49.87 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=39.9
Q ss_pred EEEEE--ecCCcc-hHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCchhhhhc
Q 034209 45 VGVIL--DMRSWS-GKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 45 VGvIl--Dl~S~i-GK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~~~aa~ 97 (101)
||+.. +.+... |.....|+++|++++|++...++ .+|.+.++|++|++..|+.
T Consensus 2 vg~~~p~~~~~~~~~~~~~~a~~lAi~~IN~~~~~l~~~~l~~~~~D~~~~~~~a~~ 58 (391)
T cd06372 2 VGFQAPWNISHPFSAQRLGAALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSAKESLA 58 (391)
T ss_pred ceeeccccccCchhhhhHHHHHHHHHHHHhcCCCCCCCceEEEEEecCCCCccHHHH
Confidence 45555 344433 44555899999999999876665 7999999999999987654
No 42
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=96.72 E-value=0.0044 Score=50.62 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=46.2
Q ss_pred CceEEEEEEEecCC-----------------cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCchhhhh
Q 034209 40 ADEVHVGVILDMRS-----------------WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~S-----------------~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~~~aa 96 (101)
+..+-||.+|..-+ ..|-....||.+|+|++|+++..++ .+|.+.++|+.+++..|.
T Consensus 7 ~Gd~~igglfpvh~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~ 81 (472)
T cd06374 7 DGDIIIGALFSVHHQPAAEKVPERKCGEIREQYGIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWHSSVAL 81 (472)
T ss_pred cCCEEEEEEEecccccccCCCCCCCccccCcchhHHHHHHHHHHHHHHhCCcccCCCceeccEEEEcCCCchHHH
Confidence 44566666665553 4677888999999999999998886 899999999999988765
No 43
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=96.66 E-value=0.0045 Score=46.98 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=42.5
Q ss_pred EEEEEecCC-------------cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhhc
Q 034209 45 VGVILDMRS-------------WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 45 VGvIlDl~S-------------~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa~ 97 (101)
||.+|++.+ ..|.....++.+|+++.|++...+ +.+|.+.++|+.+++-.|..
T Consensus 2 ig~lf~~~~~~~~~~~~c~~~~~~~~~~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D~~~~~~~a~~ 68 (348)
T cd06350 2 IGGLFPLHSGSESVSLKCGRFGKKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSPAVALR 68 (348)
T ss_pred eEEEEeCcccccCCCcccceechHHHHHHHHHHHHHHHHcCCCccCCCCceeEEEEecCCcchHHHH
Confidence 677777666 457777788999999999876555 48899999999999987754
No 44
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=96.66 E-value=0.0023 Score=49.58 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=43.7
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhhc
Q 034209 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 42 ~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa~ 97 (101)
.++||+|+|.++.. +..+.|+.+|..|.+ .+ ++.++++.+.|+++||+.++-
T Consensus 2 ~~~ig~~~~~~~~~-~~~~~a~~~~~~~~~-~~--~~~~~~l~~~d~~~d~~~~~~ 53 (362)
T cd06367 2 TVNIGVVLSGSSSE-PAFRDAVTAANFRHN-LP--YNLSLEAVAVSNDTDPISLLL 53 (362)
T ss_pred ceEEEEEecCCcch-hhHHHHhhhcccccc-CC--cccceEEEEEecCCCHHHHHH
Confidence 58999999999766 888888999998888 22 457899999999999988763
No 45
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=96.65 E-value=0.0029 Score=48.26 Aligned_cols=51 Identities=25% Similarity=0.307 Sum_probs=42.0
Q ss_pred EEEEEEecCCc----chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMRSW----SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S~----iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++++.+ .|+..+.++++|++|+| ....+.+++|..+|+++||-.+.
T Consensus 1 ~IG~l~plsG~~~a~~g~~~~~g~~la~~~iN--ggi~G~~v~l~~~D~~~~p~~a~ 55 (334)
T cd06327 1 KIGVLTDMSGVYADAEGKGSVEAAELAVEDFG--GGVLGRPIELVVADHQNKADVAA 55 (334)
T ss_pred CcccccCCCCcCccccCHHHHHHHHHHHHHhc--CCccCeEEEEEEecCCCCchHHH
Confidence 47888888744 48999999999999999 44456899999999999985543
No 46
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=96.61 E-value=0.0074 Score=45.48 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=44.4
Q ss_pred EEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 43 VHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 43 V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
++||++.+++- ..|+..+-++++|+++.|+.....+.++.|..+|+++|+-.+
T Consensus 1 i~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~ggi~G~~v~l~~~D~~~d~~~~ 56 (336)
T cd06326 1 IVLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGGVNGRKIELVTLDDGYEPERT 56 (336)
T ss_pred CEEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCCcCCceEEEEEeCCCCChHHH
Confidence 58999999875 558889999999999999876554578999999999887554
No 47
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.57 E-value=0.0057 Score=46.54 Aligned_cols=52 Identities=12% Similarity=-0.093 Sum_probs=44.2
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||+++++. +..|+....++++|+++.|+.....+.+++|.++|+++++-.+
T Consensus 1 ~IGv~~p~sG~~a~~g~~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~~~~~ 55 (341)
T cd06341 1 KIGLLYPDTGVAAVSFPGARAGADAAAGYANAAGGIAGRPIEYVWCDDQGDPASA 55 (341)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCChhHH
Confidence 589999876 4899999999999999999876555578999999999987544
No 48
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=96.49 E-value=0.0038 Score=50.24 Aligned_cols=44 Identities=9% Similarity=-0.077 Sum_probs=37.5
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecC------CCchhhhhcc
Q 034209 52 RSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDS------QAQIKFFSQK 98 (101)
Q Consensus 52 ~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS------~~d~~~aa~~ 98 (101)
+...|+++++|+++|++|||.+. +++|.++++++ +++++.++..
T Consensus 7 ~~~~~~~~~~A~~~Av~~~N~~~---~~~l~~~~~~~~~~~~~~~~d~~~~~~ 56 (368)
T cd06383 7 TEDDNDVYKQIIDDALSYINRNI---GTGLSVVHQQVETNAEVNRNDVKVALI 56 (368)
T ss_pred cccchHHHHHHHHHHHHHHhcCC---CCceEEEEecccccccccCCcHHHHHH
Confidence 44589999999999999999876 47899999999 9888777654
No 49
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=96.45 E-value=0.008 Score=54.79 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=44.6
Q ss_pred EEEEEEEec-----CCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCchhhhhc
Q 034209 43 VHVGVILDM-----RSWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 43 V~VGvIlDl-----~S~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~~~aa~ 97 (101)
..++.++-+ +...|+-.+.|++||++|+|+.+..+. =+|.++..||+||+-+|.-
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~~~~Pav~~Al~~vn~~~~ilp~y~L~~~~~ds~C~~~~g~k 102 (865)
T KOG1055|consen 42 RRIVGIGPLGPGSGGWPGGQACLPAVELALEDVNSRSDILPGYRLKLIHHDSECDPGQGTK 102 (865)
T ss_pred ceeeeeecCccccCCCcCcccccHHHHHHHHHhhccccccCCcEEEEEeccccCCccccHH
Confidence 445555443 457889999999999999999887775 7999999999999977653
No 50
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=96.37 E-value=0.0092 Score=47.84 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhh
Q 034209 54 WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 54 ~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa 96 (101)
..|...+.||++|+|++|++...+ +.+|.+.++|+.+++-.|.
T Consensus 27 ~~G~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~ 70 (452)
T cd06362 27 QRGIQRLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYAL 70 (452)
T ss_pred cchHHHHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHH
Confidence 578888999999999999988776 5899999999999876553
No 51
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=96.33 E-value=0.0072 Score=44.88 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCC-Cchhhhhc
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQ-AQIKFFSQ 97 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~-~d~~~aa~ 97 (101)
+||+|+|.++ +..+.|+++|++++|.....+ ++++.+++.+.. +|++.++.
T Consensus 1 ~iG~i~~~~~---~~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~ 53 (328)
T cd06351 1 NIGAIFDRDA---RKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLR 53 (328)
T ss_pred CeeeecCCCc---HHHHHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHH
Confidence 5899999998 999999999999999987754 356666666655 78876653
No 52
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=96.28 E-value=0.016 Score=48.50 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=48.0
Q ss_pred CCceEEEEEEEecCC----------------------cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCchhhh
Q 034209 39 TADEVHVGVILDMRS----------------------WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S----------------------~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~~~a 95 (101)
.+..+-||.+|..-+ ..|.....||.+|++++|++...++ .+|.+.++|+.+++-.|
T Consensus 9 ~~Gd~~igglFpvh~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~am~~AieeIN~~~~lLp~i~Lg~~i~Dtc~~~~~a 88 (510)
T cd06364 9 KKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINNSPTLLPNITLGYRIFDTCNTVSKA 88 (510)
T ss_pred ecCCEEEEEEEECcccccccccccccCCCCCcccccChhhHHHHHHHHHHHHHHhCCCccCCCCEEeEEEEccCCchHHH
Confidence 456678888887764 5688889999999999999887775 78999999998887655
Q ss_pred h
Q 034209 96 S 96 (101)
Q Consensus 96 a 96 (101)
.
T Consensus 89 ~ 89 (510)
T cd06364 89 L 89 (510)
T ss_pred H
Confidence 4
No 53
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=96.16 E-value=0.011 Score=47.09 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=41.9
Q ss_pred EEEEEEec---CCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDM---RSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl---~S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa 96 (101)
+||++..+ ..-.|...+.++++|++++|++...+ +.++++.+.|++|++..+.
T Consensus 1 ~ig~~~p~sg~~~~~g~~~~~a~~lAie~iN~~g~il~g~~l~~~~~d~~~~~~~a~ 57 (382)
T cd06371 1 KVGVLGPWSCDPIFSKALPDVAARLAVSRINRDPSLSLGYWFDYVLLPEPCETSRAL 57 (382)
T ss_pred CceEecCcccCchhhhhhHHHHHHHHHHHHhCCCCCCCCceEEEEEecCCCChhHHH
Confidence 36666654 23557888999999999999988764 5799999999999976654
No 54
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=96.14 E-value=0.014 Score=47.29 Aligned_cols=43 Identities=12% Similarity=0.018 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhhc
Q 034209 54 WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 54 ~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa~ 97 (101)
..|=....||++|+||+|++. .+ +.+|.+.++|+.+|+-.|..
T Consensus 32 ~~g~~~~~am~~AieeIN~~~-~Lpg~~L~~~i~Dt~~~~~~a~~ 75 (403)
T cd06361 32 IKGFLQTLAMIHAIEMINNST-LLLGVTLGYEIYDTCSEVTTAMA 75 (403)
T ss_pred hhHHHHHHHHHHHHHHHhCCC-CCCCCEEceEEEeCCCChHHHHH
Confidence 477888889999999999887 44 48999999999999987754
No 55
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=95.88 E-value=0.023 Score=46.73 Aligned_cols=43 Identities=9% Similarity=-0.073 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCchhhhh
Q 034209 54 WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 54 ~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~~~aa 96 (101)
.-|-....||.+|++++|+++..+. .+|..+++|+.+++-.|+
T Consensus 36 ~~~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~ 79 (469)
T cd06365 36 LKNYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKAL 79 (469)
T ss_pred chhhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHH
Confidence 4777888899999999999887775 899999999999987765
No 56
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=95.87 E-value=0.024 Score=46.09 Aligned_cols=51 Identities=10% Similarity=0.082 Sum_probs=41.1
Q ss_pred eEEEEEEEecCC-------------cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCch
Q 034209 42 EVHVGVILDMRS-------------WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQI 92 (101)
Q Consensus 42 ~V~VGvIlDl~S-------------~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~ 92 (101)
.+.||.++.... ..|.....||.+|++++|++...++ .+|.+.++|+.+++
T Consensus 2 di~igglfp~h~~~~~~~~c~~~~~~~g~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~ 66 (463)
T cd06376 2 DITLGGLFPVHARGPAGVPCGDIKKENGIHRLEAMLYALDQINSDPDLLPNVTLGARILDTCSRD 66 (463)
T ss_pred CeEEEEEEeeeeCCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCc
Confidence 356777776551 3677789999999999999887774 89999999998765
No 57
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=95.84 E-value=0.018 Score=45.32 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=42.0
Q ss_pred EEEEEEecC----CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCC----chhhhh
Q 034209 44 HVGVILDMR----SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQA----QIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~----S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~----d~~~aa 96 (101)
+||+++=.+ +..|+..+.++++|+++.|+....+ +.+|++.++|+++ ++-.++
T Consensus 1 ~~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~ 62 (396)
T cd06373 1 TLAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAP 62 (396)
T ss_pred CeEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhH
Confidence 478877333 4678888999999999999987554 5789999999998 666554
No 58
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=95.79 E-value=0.032 Score=44.48 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCC
Q 034209 54 WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQA 90 (101)
Q Consensus 54 ~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~ 90 (101)
..|+..+.|+++|++++|++...+ +.+|.+.++|+.+
T Consensus 39 ~~g~~~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~~~ 76 (410)
T cd06363 39 LSGYRLFQAMRFAVEEINNSTSLLPGVTLGYEIFDHCS 76 (410)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCCeeceEEEecCC
Confidence 578899999999999999998877 5899999999844
No 59
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=95.53 E-value=0.036 Score=45.57 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhh
Q 034209 54 WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 54 ~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa 96 (101)
.-|-....||.+|++++|+++..+ +.+|.++++|+.+++-.|.
T Consensus 27 ~~g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~ 70 (458)
T cd06375 27 DRGIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYAL 70 (458)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHH
Confidence 568889999999999999988776 4899999999999887665
No 60
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=95.37 E-value=0.052 Score=41.52 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=40.3
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||+++.++. ..|+..+.++++|++++|.- ..+.+++|..+|+++++-.+
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~lAv~~ingg--i~G~~i~l~~~D~~~~p~~a 53 (333)
T cd06359 1 KIGFITTLSGPAAALGQDMRDGFQLALKQLGGK--LGGLPVEVVVEDDGLKPDVA 53 (333)
T ss_pred CeEEEEecccchhhhhHHHHHHHHHHHHHhCCc--cCCEEEEEEecCCCCChHHH
Confidence 4899998775 56888999999999999732 33578999999999998544
No 61
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=94.92 E-value=0.091 Score=41.17 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCceEEEEEEEecCCcchHHHHHHHHHHHHHHhcc
Q 034209 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYAL 73 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~ 73 (101)
.+..|+||+|++ ++ ....+.++|+++.|++
T Consensus 16 ~~~~i~IG~i~~-~~----~~~~~~~~Ai~~~N~~ 45 (377)
T cd06379 16 SPKTVNIGAVLS-NK----KHEQEFKEAVNAANVE 45 (377)
T ss_pred CCcEEEEeEEec-ch----hHHHHHHHHHHHHhhh
Confidence 367899999997 33 4556667777777764
No 62
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=94.89 E-value=0.038 Score=42.95 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=38.0
Q ss_pred EEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~S~---iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||+++.++.. .|+..+.++++|++++| +.+++|.++|+++ +-.+
T Consensus 1 kIG~l~plsG~~a~~g~~~~~g~~lA~~~in------G~~i~l~~~D~~~-~~~a 48 (336)
T cd06339 1 RIALLLPLSGPLASVGQAIRNGFLAALYDLN------GASIELRVYDTAG-AAGA 48 (336)
T ss_pred CeEEEEcCCCcchHHHHHHHHHHHHHHHhcc------CCCceEEEEeCCC-cccH
Confidence 58999988775 79999999999999999 3568899999998 6443
No 63
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=94.76 E-value=0.04 Score=44.25 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=36.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCC-ce-eEEEEEeecCCCchhhhhcc
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTH-YK-TRLVLHSRDSQAQIKFFSQK 98 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~-~~-TrL~L~~rDS~~d~~~aa~~ 98 (101)
+||+|+|.++..+++ |..+|+.+.|.+... .+ ..+.+...|..+|++.|+-+
T Consensus 1 ~IG~if~~~~~~~~~---af~~ala~~~iN~~gg~~~~~i~~v~~dd~~d~~~a~~~ 54 (363)
T cd06381 1 HIGAIFSESALEDDE---VFAVAVIDLNINEQILQTEKITLSISFIDLNNHFDAVQE 54 (363)
T ss_pred CeeeeccCCcchHHH---HHHHHHHHhhccccccCCccceeeeEeecCCChHHHHHH
Confidence 599999999876544 666666666544333 22 34666678999999988754
No 64
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=94.64 E-value=0.1 Score=37.30 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=38.5
Q ss_pred EEEEEEecCC--cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhh
Q 034209 44 HVGVILDMRS--WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S--~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa 96 (101)
+||++++..+ ..+.....++.++..+++..+..+ +.+|.+.++|+.+++-.+.
T Consensus 1 ~iG~~f~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~~~d~~~~~~~~~ 56 (298)
T cd06269 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINNDLPNTTLGYEIYDSCCSPSDAF 56 (298)
T ss_pred CEEEEeecccccccCHHHHHHHHHHHHHHHHHhccCCCCeeeeEEEecCCChHHHH
Confidence 4899999998 677776666666666665544322 4789999999998775543
No 65
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=94.62 E-value=0.072 Score=44.43 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=37.8
Q ss_pred EEEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 43 VHVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 43 V~VGvIlDl~S~---iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
++||+++.++.+ .++..+-+..||++++|++...++.+|+..+.|..+|+-.-+
T Consensus 1 ikVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGvlG~~le~v~~Dp~Sd~~~ya 57 (363)
T PF13433_consen 1 IKVGILHSLTGTMAISERSLLDGALLAIEEINAAGGVLGRQLEPVIYDPASDPSTYA 57 (363)
T ss_dssp --EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTBTTB--EEEEE--TT-HHHHH
T ss_pred CeEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCcCCeEEEEEEECCCCCHHHHH
Confidence 589999998875 456667788999999999988888999999999999985543
No 66
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=94.46 E-value=0.064 Score=42.67 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCch
Q 034209 55 SGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQI 92 (101)
Q Consensus 55 iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~ 92 (101)
.+...+.|+++|++|+|++...+ +.+|.++++|++|++
T Consensus 15 ~~~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~ 53 (387)
T cd06386 15 SSARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGN 53 (387)
T ss_pred ehhhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCc
Confidence 45677899999999999977654 589999999999987
No 67
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=94.30 E-value=0.14 Score=38.61 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=39.7
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||+++.++. ..|.....++++|+++.+.- .-+.+++|.++|+++|+-.+
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~~~~~--i~G~~i~l~~~D~~~~~~~~ 53 (336)
T cd06360 1 KVGLLLPYSGTYAALGEDITRGFELALQEAGGK--LGGREVEFVVEDDEAKPDVA 53 (336)
T ss_pred CeEEEEecccchHhhcHhHHHHHHHHHHHhCCC--cCCEEEEEEEcCCCCChHHH
Confidence 5899999775 44588899999999998532 22479999999999998654
No 68
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=94.13 E-value=0.17 Score=37.82 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=40.2
Q ss_pred EEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 44 HVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~S~---iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+||+++.++.+ .|+....++++|++++|.- ..+.+++|.++|+++++-.+
T Consensus 1 ~IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~~~--i~G~~i~l~~~d~~~~~~~~ 53 (333)
T cd06332 1 KIGLLTTLSGPYAALGQDIRDGFELALKQLGGK--LGGRPVEVVVEDDELKPDVA 53 (333)
T ss_pred CeEEEeeccCchHhhhHHHHHHHHHHHHHhCCC--cCCeEEEEEEecCCCCHHHH
Confidence 58999998865 6778999999999999732 22478999999999987543
No 69
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=93.21 E-value=0.15 Score=39.80 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=42.3
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCC--CceeEEEEEeecCCCchhhhhc
Q 034209 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNT--HYKTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 44 ~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~--~~~TrL~L~~rDS~~d~~~aa~ 97 (101)
+||++.+++ +..|...+.+.++|++++|.--. .-+.+++|..+|+++||=.|..
T Consensus 1 kIG~~~~lSG~~a~~G~~~~~~~~~~~~~in~g~~i~G~~~~i~lv~~D~~~~p~~a~~ 59 (357)
T cd06337 1 KIGYVSPRTGPLAAFGEADPWVLETMRSALADGLVVGGSTYEVEIIVRDSQSNPNRAGL 59 (357)
T ss_pred CcceeccCcCcccccccchHHHHHHHHHHhcCCeeECCceeEEEEEEecCCCCHHHHHH
Confidence 489999997 56798888999999999985421 1124799999999999976653
No 70
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=90.92 E-value=0.36 Score=38.31 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCch
Q 034209 58 ISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQI 92 (101)
Q Consensus 58 ~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~ 92 (101)
....|+++|+|++|+....+ +.+|.+.++|+++|+
T Consensus 19 ~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~~~~ 54 (399)
T cd06384 19 RVGPAIRMAVERIQNKGKLLRGYTITLLNKSSELNG 54 (399)
T ss_pred hhHHHHHHHHHHHhccCCcCCCceEEEEEeccCCcc
Confidence 34479999999999987653 578999999987664
No 71
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=86.23 E-value=1.2 Score=33.14 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhccCCCc-eeEEEEEeecCCC
Q 034209 59 SNSCISMAIADFYALNTHY-KTRLVLHSRDSQA 90 (101)
Q Consensus 59 a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~ 90 (101)
.+.|+++|++++|+++..+ +.+|.+++.|+.+
T Consensus 2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~ 34 (348)
T PF01094_consen 2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTCS 34 (348)
T ss_dssp HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeecc
Confidence 4679999999999987744 4889999999973
No 72
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=84.48 E-value=2.9 Score=34.85 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=39.8
Q ss_pred ceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCC-Cchhhhh
Q 034209 41 DEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQ-AQIKFFS 96 (101)
Q Consensus 41 ~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~-~d~~~aa 96 (101)
..++||+|+|-. ..+..|...|++=+|...... +++|+..+..-+ .|+|..+
T Consensus 17 ~~i~iG~if~~~----~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~~~~dsf~~~ 70 (382)
T cd06377 17 HTVRLGALLVRA----PAPRDRVLAALARANRAPLLPYNLSLEVVAAAAPSRDPASLL 70 (382)
T ss_pred CceeeeEEecCC----chHHHHHHHHHHHhccccccccCceeEEeEEEcCCCChHHHH
Confidence 359999999966 447999999999999876443 478888888765 4666543
No 73
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=79.39 E-value=4 Score=32.70 Aligned_cols=41 Identities=10% Similarity=-0.060 Sum_probs=32.2
Q ss_pred CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhh
Q 034209 53 SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKF 94 (101)
Q Consensus 53 S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~ 94 (101)
+.-+...+.+++||++|+|+.-..++.+++|...|. ++|=.
T Consensus 7 ~~~~~~~~~ga~lAveeiNaaGGv~G~~ielv~~D~-~~p~~ 47 (347)
T TIGR03863 7 PPPEDRGLDGARLAIEDNNTTGRFLGQTFTLDEVAV-RTPED 47 (347)
T ss_pred CCCcchHHHHHHHHHHHHHhhCCcCCceEEEEEccC-CCHHH
Confidence 455677889999999999987777777899988885 45533
No 74
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=78.46 E-value=3.6 Score=33.49 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=35.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce--eEEEEEeecCC-Cchhhhh
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK--TRLVLHSRDSQ-AQIKFFS 96 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~--TrL~L~~rDS~-~d~~~aa 96 (101)
+||+|||-++ .....|...|++.+|.....+. ++|+-++..-+ .|.|++.
T Consensus 1 ~iG~iF~~~~---~~~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~~~~dsf~~~ 53 (372)
T cd06387 1 SIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVT 53 (372)
T ss_pred CcceeecCCc---HHHHHHHHHHHHHhcccccccccCeEEEEeeEEecCCChHHHH
Confidence 5899999655 3467899999999998764443 57777665444 4666554
No 75
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=76.67 E-value=6.5 Score=26.91 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=33.0
Q ss_pred EEEEEEecC--CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCch
Q 034209 44 HVGVILDMR--SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQI 92 (101)
Q Consensus 44 ~VGvIlDl~--S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~ 92 (101)
+||+|+... +..+.....+++.|+++. . ..+.+.+.|+.+++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~~ 44 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEI-----G--RGLEVILADSQSDP 44 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHh-----C--CceEEEEecCCCCH
Confidence 489999776 788888888999999997 1 24667788888775
No 76
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=70.20 E-value=9.5 Score=30.65 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=33.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc--eeEEEEEeecCC-Cchhhh
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHY--KTRLVLHSRDSQ-AQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~--~TrL~L~~rDS~-~d~~~a 95 (101)
+||.|||-++ ..+..|.+.|++.+|.+.... +++|+-+++.-+ .|.|.+
T Consensus 1 ~iG~if~~~~---~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~ 52 (371)
T cd06388 1 QIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAV 52 (371)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHH
Confidence 4899999665 346799999999999865332 267776665443 344443
No 77
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=56.93 E-value=12 Score=30.05 Aligned_cols=28 Identities=7% Similarity=0.227 Sum_probs=23.3
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccC
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALN 74 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~ 74 (101)
+||+|||-++ .....|...|++.+|...
T Consensus 1 ~iG~if~~~~---~~~~~af~~av~~~N~~~ 28 (364)
T cd06390 1 QIGGLFPNQQ---SQEHAAFRFALSQLTEPP 28 (364)
T ss_pred CCceeeCCCC---hHHHHHHHHHHHHhccCc
Confidence 4899998865 456789999999999875
No 78
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=51.38 E-value=12 Score=30.66 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=17.9
Q ss_pred CCCCCccchhhHHHHHHHHH
Q 034209 1 MELKGKKEQAFFSSLILLII 20 (101)
Q Consensus 1 ~~~~~~~~~~~~~~~~ll~~ 20 (101)
|||.+..-+.+|+.+|+|++
T Consensus 1 ~~~~~~~~~kl~~~~~~~~~ 20 (279)
T PF07271_consen 1 MKLPPRRKKKLFLLAWLLFV 20 (279)
T ss_pred CCCChhhHHHHHHHHHHHHH
Confidence 78889888999999999965
No 79
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=45.03 E-value=35 Score=27.19 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=31.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCC-Cchhhh
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ-AQIKFF 95 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~-~d~~~a 95 (101)
+||.|||-++ ..+..|...|++-+|... ++|+-++..-+ .|.|.+
T Consensus 1 ~ig~if~~~~---~~~~~af~~a~~~~n~~~----~~l~~~~~~~~~~dsf~~ 46 (370)
T cd06389 1 QIGGLFPRGA---DQEYSAFRVGMVQFSTSE----FRLTPHIDNLEVANSFAV 46 (370)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhcccC----ceeeeeeEEecccchHHH
Confidence 4899999877 346799999999998752 56766554333 344443
No 80
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=44.75 E-value=68 Score=23.13 Aligned_cols=46 Identities=7% Similarity=0.015 Sum_probs=28.6
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCch
Q 034209 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQI 92 (101)
Q Consensus 44 ~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~ 92 (101)
+||++++.+++.-.....+|+..++...-. .+.++++.+.|+..|+
T Consensus 1 ~igv~~~~~~~~~~~~~~gi~~~~~~~g~~---~g~~v~l~~~~~~~~~ 46 (281)
T cd06325 1 KVGILQLVEHPALDAARKGFKDGLKEAGYK---EGKNVKIDYQNAQGDQ 46 (281)
T ss_pred CeEEecCCCCcchHHHHHHHHHHHHHhCcc---CCceEEEEEecCCCCH
Confidence 478888876666555556666555554321 2346777777776655
No 81
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=43.04 E-value=1e+02 Score=21.80 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=21.5
Q ss_pred hhhhhhcCCCCCCceEEEEEEEecCCcc--------hHHHHHHH
Q 034209 28 ELEKVKNNTSFTADEVHVGVILDMRSWS--------GKISNSCI 63 (101)
Q Consensus 28 ~~~~~qn~~~s~~~~V~VGvIlDl~S~i--------GK~a~~AI 63 (101)
.|+.+-.+.......++||+|=.=+|.. |+.-...+
T Consensus 29 ~~~~a~~~~~~~~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l 72 (164)
T TIGR03061 29 LFLWAFWDPYGNLDNLPVAVVNEDKGATYDGKTLNAGDDLVKEL 72 (164)
T ss_pred HHHHHHcCcccccCCCeEEEEECCCCCCcCCcccchHHHHHHHH
Confidence 3444433322346789999888666665 66654444
No 82
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=42.13 E-value=1e+02 Score=24.00 Aligned_cols=30 Identities=3% Similarity=-0.071 Sum_probs=22.1
Q ss_pred ceEEEEEEE-ecCCcchHHHHHHHHHHHHHH
Q 034209 41 DEVHVGVIL-DMRSWSGKISNSCISMAIADF 70 (101)
Q Consensus 41 ~~V~VGvIl-Dl~S~iGK~a~~AIemAveDf 70 (101)
..-+||+|+ +.++..=......|+.+.++.
T Consensus 45 ~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~ 75 (343)
T PRK10936 45 KAWKLCALYPHLKDSYWLSVNYGMVEEAKRL 75 (343)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHHHHh
Confidence 468899999 556666666666788888875
No 83
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=37.01 E-value=77 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=21.0
Q ss_pred EEEEEE-ecCCcchHHHHHHHHHHHHH
Q 034209 44 HVGVIL-DMRSWSGKISNSCISMAIAD 69 (101)
Q Consensus 44 ~VGvIl-Dl~S~iGK~a~~AIemAveD 69 (101)
+||+|+ +..+.....-..+++.|.+.
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~ 27 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE 27 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh
Confidence 488888 55678888888888888887
No 84
>PF15583 Imm41: Immunity protein 41
Probab=33.45 E-value=30 Score=26.31 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc
Q 034209 54 WSGKISNSCISMAIADFYALNTHY 77 (101)
Q Consensus 54 ~iGK~a~~AIemAveDfna~~~~~ 77 (101)
..-++++.+|..|++||..++..|
T Consensus 110 ~at~EE~~~~~~aL~dF~~~p~~Y 133 (158)
T PF15583_consen 110 TATSEENTAINKALKDFARNPLEY 133 (158)
T ss_pred ecCHHHHHHHHHHHHHHHhCHHhh
Confidence 346899999999999999877655
No 85
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=32.25 E-value=3.2e+02 Score=24.61 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=23.7
Q ss_pred ceEEEEEEEecCCcchH-----HHHHHHHHHHHHHhc
Q 034209 41 DEVHVGVILDMRSWSGK-----ISNSCISMAIADFYA 72 (101)
Q Consensus 41 ~~V~VGvIlDl~S~iGK-----~a~~AIemAveDfna 72 (101)
..+.|-.+||.+..+|. .++..+...++-|.-
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~I 77 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNL 77 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhcc
Confidence 46899999999999993 355556666666654
No 86
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=30.28 E-value=1.7e+02 Score=22.73 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=26.4
Q ss_pred CceEEEEEEE-ecCCcchHHHHHHHHHHHHHHh
Q 034209 40 ADEVHVGVIL-DMRSWSGKISNSCISMAIADFY 71 (101)
Q Consensus 40 ~~~V~VGvIl-Dl~S~iGK~a~~AIemAveDfn 71 (101)
+...+||+|+ ++++..-.....+|+-+.++.+
T Consensus 23 ~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g 55 (330)
T PRK10355 23 AKEVKIGMAIDDLRLERWQKDRDIFVKKAESLG 55 (330)
T ss_pred CCCceEEEEecCCCchHHHHHHHHHHHHHHHcC
Confidence 4589999999 5888888888889999988763
No 87
>PF14967 FAM70: FAM70 protein
Probab=29.29 E-value=27 Score=29.26 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=32.7
Q ss_pred CCCCccchhhHHHHHHHHHHHhcchhhhhhhhcCCCCCCceEEE-----EEEEecCCcchHHHH
Q 034209 2 ELKGKKEQAFFSSLILLIIHLCPSCSELEKVKNNTSFTADEVHV-----GVILDMRSWSGKISN 60 (101)
Q Consensus 2 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~qn~~~s~~~~V~V-----GvIlDl~S~iGK~a~ 60 (101)
+.+.+|.+++++..-||++-+..+. .|-+. + +|...|.| |+||.+.|-.|=+..
T Consensus 19 ~f~rRkk~slw~~~~lL~vS~~ilt--vGLaa-t--TRTeNVtVgGYyPGIILgFGSFLGIiGi 77 (327)
T PF14967_consen 19 EFARRKKTSLWFVVSLLVVSLLILT--VGLAA-T--TRTENVTVGGYYPGIILGFGSFLGIIGI 77 (327)
T ss_pred HHhhhhceeeeeeHHHHHHHHHHHH--hhhhe-e--eeecceEecccccceEEeehhHHHHhhh
Confidence 3456677776666656655333321 23233 2 36777887 589999998886543
No 88
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=25.24 E-value=3.1e+02 Score=22.29 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=35.8
Q ss_pred HHHHHHHhcchhhhhhhhcCCCCCCceEEEEEEEecCCcch-------------HHHHHHHHHHHHHHhc
Q 034209 16 ILLIIHLCPSCSELEKVKNNTSFTADEVHVGVILDMRSWSG-------------KISNSCISMAIADFYA 72 (101)
Q Consensus 16 ~ll~~~~~~~~~~~~~~qn~~~s~~~~V~VGvIlDl~S~iG-------------K~a~~AIemAveDfna 72 (101)
.++.=+|.| +|-++...++...-.++-++|+...|..| |++|.||+++..-.-.
T Consensus 121 il~~Q~~lP---LLkkaas~~~gd~~s~~raaIinisS~~~s~~~~~~~~~~AYrmSKaAlN~f~ksls~ 187 (249)
T KOG1611|consen 121 ILLTQAFLP---LLKKAASKVSGDGLSVSRAAIINISSSAGSIGGFRPGGLSAYRMSKAALNMFAKSLSV 187 (249)
T ss_pred HHHHHHHHH---HHHHHhhcccCCcccccceeEEEeeccccccCCCCCcchhhhHhhHHHHHHHHHHhhh
Confidence 455557777 34455555555566677777776655443 8999999998875543
No 89
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=25.24 E-value=3.2e+02 Score=21.07 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=20.6
Q ss_pred CceEEEEEEE-ecCCcchHHHHHHHHHHHHHH
Q 034209 40 ADEVHVGVIL-DMRSWSGKISNSCISMAIADF 70 (101)
Q Consensus 40 ~~~V~VGvIl-Dl~S~iGK~a~~AIemAveDf 70 (101)
.....||+|+ +...+.=.....+|+.+.++.
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~ 53 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKAA 53 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHhc
Confidence 4457899888 555555555566677777765
No 90
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=23.83 E-value=1.3e+02 Score=23.98 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=13.4
Q ss_pred CCCCCccchhh---HHHHHHHHHHH
Q 034209 1 MELKGKKEQAF---FSSLILLIIHL 22 (101)
Q Consensus 1 ~~~~~~~~~~~---~~~~~ll~~~~ 22 (101)
+++|.|-|+-. ++.+|.+..+.
T Consensus 85 ~~lK~k~pk~i~~~~~~~Wilnlli 109 (265)
T PF03402_consen 85 AELKVKAPKYIGPSCLFCWILNLLI 109 (265)
T ss_pred hhhhhhcCCccccHHHHHHHHHHhh
Confidence 47888888754 44456555433
No 91
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=21.74 E-value=3e+02 Score=19.52 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=24.7
Q ss_pred eEEEEEEEecCCcch----HHHHHHHHHHHHHHhc
Q 034209 42 EVHVGVILDMRSWSG----KISNSCISMAIADFYA 72 (101)
Q Consensus 42 ~V~VGvIlDl~S~iG----K~a~~AIemAveDfna 72 (101)
++.|..++|.+..+| ..++.+++..++.+..
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~ 36 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLK 36 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhh
Confidence 357889999999998 5667778888888854
No 92
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=20.40 E-value=2e+02 Score=20.57 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=16.4
Q ss_pred EEEEEE-ecCCcchHHHHHHHHHHHHH
Q 034209 44 HVGVIL-DMRSWSGKISNSCISMAIAD 69 (101)
Q Consensus 44 ~VGvIl-Dl~S~iGK~a~~AIemAveD 69 (101)
+||+|+ +.+++.-..-..+|+.|.++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~ 27 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKV 27 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHH
Confidence 478888 44555555555666666666
Done!