Query 034209
Match_columns 101
No_of_seqs 111 out of 221
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3om0_A Glutamate receptor, ion 98.6 1.1E-07 3.9E-12 71.9 6.4 53 41-93 3-56 (393)
2 3o21_A Glutamate receptor 3; p 98.5 3E-07 1E-11 70.5 6.7 55 40-97 3-60 (389)
3 3qek_A NMDA glutamate receptor 98.5 3E-07 1E-11 69.4 6.5 53 39-96 2-54 (384)
4 3h6g_A Glutamate receptor, ion 98.2 2.1E-06 7.3E-11 64.7 5.9 56 40-95 2-60 (395)
5 4gnr_A ABC transporter substra 98.2 2.7E-06 9.2E-11 62.9 5.9 58 40-97 5-65 (353)
6 4f11_A Gamma-aminobutyric acid 98.2 3.4E-06 1.2E-10 64.4 6.6 58 39-97 11-74 (433)
7 3saj_A Glutamate receptor 1; r 98.1 4.1E-06 1.4E-10 63.5 5.7 52 39-98 7-59 (384)
8 3hsy_A Glutamate receptor 2; l 98.0 9.9E-06 3.4E-10 61.3 5.4 49 42-97 2-51 (376)
9 4gpa_A Glutamate receptor 4; P 98.0 7E-06 2.4E-10 60.6 4.3 56 39-97 2-60 (389)
10 1jdp_A NPR-C, atrial natriuret 97.9 2.9E-05 9.9E-10 59.5 6.9 54 40-93 7-68 (441)
11 1dp4_A Atrial natriuretic pept 97.8 5.3E-05 1.8E-09 57.5 6.7 50 42-91 2-56 (435)
12 3h5l_A Putative branched-chain 97.7 0.0001 3.4E-09 56.0 6.9 57 40-96 12-72 (419)
13 3i45_A Twin-arginine transloca 97.7 8.7E-05 3E-09 55.6 6.5 57 40-96 3-62 (387)
14 3lkb_A Probable branched-chain 97.7 0.00013 4.5E-09 54.5 7.4 57 39-95 4-63 (392)
15 3n0x_A Possible substrate bind 97.7 5.6E-05 1.9E-09 56.7 5.3 56 41-96 3-62 (374)
16 2e4u_A Metabotropic glutamate 97.6 0.00011 3.6E-09 59.1 6.4 57 40-96 12-82 (555)
17 4f06_A Extracellular ligand-bi 97.5 0.00014 4.7E-09 54.8 5.3 56 39-96 2-61 (371)
18 3kg2_A Glutamate receptor 2; I 97.5 0.00013 4.4E-09 60.0 5.5 49 42-97 2-51 (823)
19 3ipc_A ABC transporter, substr 97.4 0.00036 1.2E-08 51.2 6.7 54 42-95 2-58 (356)
20 3eaf_A ABC transporter, substr 97.4 0.00032 1.1E-08 52.7 6.3 55 41-95 3-64 (391)
21 3lop_A Substrate binding perip 97.4 0.00027 9.3E-09 52.3 5.6 56 40-95 3-61 (364)
22 3mq4_A Mglur7, metabotropic gl 97.3 0.00049 1.7E-08 54.4 6.8 57 40-96 14-84 (481)
23 3hut_A Putative branched-chain 97.2 0.00094 3.2E-08 49.0 6.6 55 41-95 3-60 (358)
24 1usg_A Leucine-specific bindin 97.1 0.0013 4.5E-08 47.7 6.6 54 42-95 2-58 (346)
25 3i09_A Periplasmic branched-ch 97.1 0.0013 4.5E-08 48.8 6.7 55 40-96 2-60 (375)
26 3td9_A Branched chain amino ac 97.0 0.0011 3.7E-08 48.9 5.5 54 39-95 13-69 (366)
27 4eyg_A Twin-arginine transloca 97.0 0.0011 3.9E-08 48.6 5.5 54 40-95 4-60 (368)
28 3n0w_A ABC branched chain amin 96.9 0.0011 3.9E-08 49.3 5.2 55 40-96 4-62 (379)
29 3sm9_A Mglur3, metabotropic gl 96.8 0.0022 7.7E-08 50.9 6.1 59 39-97 10-82 (479)
30 1pea_A Amidase operon; gene re 96.7 0.0025 8.4E-08 47.7 5.5 56 40-95 5-63 (385)
31 4evq_A Putative ABC transporte 96.2 0.011 3.7E-07 43.4 6.0 54 40-95 14-70 (375)
32 3sg0_A Extracellular ligand-bi 95.4 0.0075 2.6E-07 44.2 2.4 50 40-95 25-77 (386)
33 3ks9_A Mglur1, metabotropic gl 95.2 0.051 1.7E-06 43.3 6.9 58 39-96 14-89 (496)
34 3snr_A Extracellular ligand-bi 95.0 0.011 3.7E-07 42.8 2.1 50 40-95 5-57 (362)
35 3ckm_A YRAM (HI1655), LPOA; pe 94.2 0.027 9.4E-07 41.6 2.8 46 42-96 2-50 (327)
36 2h4a_A YRAM (HI1655); perplasm 81.7 0.67 2.3E-05 35.3 2.1 41 44-93 2-45 (325)
37 3qel_B Glutamate [NMDA] recept 73.4 5.5 0.00019 30.2 5.0 50 40-96 2-52 (364)
38 2qh8_A Uncharacterized protein 55.5 21 0.00071 25.5 5.0 52 39-93 5-56 (302)
39 1b67_A Protein (histone HMFA); 24.0 51 0.0017 19.5 2.3 21 52-72 17-37 (68)
40 2dw3_A Intrinsic membrane prot 23.7 19 0.00064 23.5 0.2 20 10-29 35-54 (77)
41 3b0c_W CENP-W, centromere prot 22.4 45 0.0015 20.5 1.8 20 53-72 21-40 (76)
42 2nrg_A Intrinsic membrane prot 21.2 24 0.00081 23.3 0.4 35 10-47 36-70 (82)
43 3pvh_A UPF0603 protein AT1G547 21.0 1.5E+02 0.0052 20.0 4.5 40 47-89 17-56 (153)
44 3lkv_A Uncharacterized conserv 20.5 1.7E+02 0.006 21.0 5.0 53 38-94 4-57 (302)
No 1
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=98.55 E-value=1.1e-07 Score=71.85 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=48.1
Q ss_pred ceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCchh
Q 034209 41 DEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQIK 93 (101)
Q Consensus 41 ~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~~ 93 (101)
.+|+||+++++++..|+..+.|+++|++++|++...++ .+|.++++|+.+++-
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~ 56 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQ 56 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCch
Confidence 47999999999999999999999999999999877664 799999999999753
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.47 E-value=3e-07 Score=70.54 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=48.6
Q ss_pred CceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCC-c-eeEEEEEeecCCC-chhhhhc
Q 034209 40 ADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTH-Y-KTRLVLHSRDSQA-QIKFFSQ 97 (101)
Q Consensus 40 ~~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~-~-~TrL~L~~rDS~~-d~~~aa~ 97 (101)
|.+++||+|++++.. ..+.++++|++++|++... + +.+|.++++|++| |+..|..
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~ 60 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTN 60 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHH
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHH
Confidence 678999999999877 8899999999999998766 3 5899999999998 9987764
No 3
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=98.46 E-value=3e-07 Score=69.38 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=48.0
Q ss_pred CCceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+|.+|+||+|++++ ..+.++++|++|+|+.....+.+|++...|+++|+..++
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~ 54 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMA 54 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHH
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHH
Confidence 57899999999998 789999999999999876666899999999999998887
No 4
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=98.20 E-value=2.1e-06 Score=64.72 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=47.3
Q ss_pred CceEEEEEEEecC-CcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCC-Cchhhh
Q 034209 40 ADEVHVGVILDMR-SWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQ-AQIKFF 95 (101)
Q Consensus 40 ~~~V~VGvIlDl~-S~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~-~d~~~a 95 (101)
|.+|+||++++++ +..|+..+.|+++|++++|++...++ .+|.++++|.. .|+..+
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~ 60 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEA 60 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHH
Confidence 6789999999994 68899999999999999999877774 79999998876 466543
No 5
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=98.18 E-value=2.7e-06 Score=62.90 Aligned_cols=58 Identities=9% Similarity=0.161 Sum_probs=50.1
Q ss_pred CceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhhc
Q 034209 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 40 ~~~V~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa~ 97 (101)
..+|+||++++++ +..|+..+.++++|++++|+.....+.+|+|.++|+++||-.|.-
T Consensus 5 ~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~ 65 (353)
T 4gnr_A 5 EKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAAS 65 (353)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHH
T ss_pred CCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHH
Confidence 5689999999986 467999999999999999998776678999999999999976653
No 6
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=98.17 E-value=3.4e-06 Score=64.38 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=50.1
Q ss_pred CCceEEEEEEEecCC-----cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhhc
Q 034209 39 TADEVHVGVILDMRS-----WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S-----~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa~ 97 (101)
...+|+||++++++- ..|+..+.++++|++++|+. ..+ +.+|.++++|+++|+-.|..
T Consensus 11 ~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~ 74 (433)
T 4f11_A 11 SSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLK 74 (433)
T ss_dssp CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHH
T ss_pred CCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHH
Confidence 356899999999987 57899999999999999998 555 37999999999999977653
No 7
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=98.10 E-value=4.1e-06 Score=63.47 Aligned_cols=52 Identities=6% Similarity=0.116 Sum_probs=45.2
Q ss_pred CCceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC-chhhhhcc
Q 034209 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQA-QIKFFSQK 98 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~-d~~~aa~~ 98 (101)
.+.+|+||+|++++.. ..+.|++||++|+|+.. +|++.++|+++ |+..++.+
T Consensus 7 ~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~~d~~~a~~~ 59 (384)
T 3saj_A 7 MPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYR 59 (384)
T ss_dssp CCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS-----EEEEEEEECCTTCHHHHHHH
T ss_pred CCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC-----ccceeeEecccCchhhHHHH
Confidence 3678999999999877 88999999999999865 89999999997 88876543
No 8
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=97.96 E-value=9.9e-06 Score=61.33 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=42.2
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC-chhhhhc
Q 034209 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQA-QIKFFSQ 97 (101)
Q Consensus 42 ~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~-d~~~aa~ 97 (101)
+++||+|++++. ..++.++++|++|+|+. +.+|++.++|+++ |+..|..
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~----g~~l~~~~~d~~~~d~~~a~~ 51 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTN 51 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS----SCEEEEEEEEECTTCHHHHHH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC----CeEEEEEEeecCCCChHHHHH
Confidence 689999999875 47899999999999987 3689999999876 8887754
No 9
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=97.95 E-value=7e-06 Score=60.56 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce--eEEEEEeecCC-Cchhhhhc
Q 034209 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYK--TRLVLHSRDSQ-AQIKFFSQ 97 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~--TrL~L~~rDS~-~d~~~aa~ 97 (101)
-|.+|+||+|++.+ |+....|+++|++++|++...++ .+|..++.|+. ++++.++.
T Consensus 2 ~P~~I~IG~lf~~~---~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~ 60 (389)
T 4gpa_A 2 FPSSVQIGGLFIRN---TDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTN 60 (389)
T ss_dssp CCSEEEEEEEECTT---CHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHH
T ss_pred CCCeEEEEEEEcCC---ChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHH
Confidence 47899999999977 57888999999999999887763 66777776655 56666543
No 10
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=97.89 E-value=2.9e-05 Score=59.49 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=43.9
Q ss_pred CceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCC----Cc-eeEEEEEeecCCCchh
Q 034209 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNT----HY-KTRLVLHSRDSQAQIK 93 (101)
Q Consensus 40 ~~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~----~~-~TrL~L~~rDS~~d~~ 93 (101)
+.+++||++++++. ..|+..+.|+++|++++|++.. .+ +.+|.++++|++|++-
T Consensus 7 ~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~ 68 (441)
T 1jdp_A 7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR 68 (441)
T ss_dssp CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH
T ss_pred CCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh
Confidence 45799999999865 4567888999999999998765 45 4899999999999985
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=97.78 E-value=5.3e-05 Score=57.46 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=41.6
Q ss_pred eEEEEEEEecC---CcchHHHHH-HHHHHHHHHhccCCCc-eeEEEEEeecCCCc
Q 034209 42 EVHVGVILDMR---SWSGKISNS-CISMAIADFYALNTHY-KTRLVLHSRDSQAQ 91 (101)
Q Consensus 42 ~V~VGvIlDl~---S~iGK~a~~-AIemAveDfna~~~~~-~TrL~L~~rDS~~d 91 (101)
.++||+++.++ +..|..... |+++|++++|++...+ +.+|.++++|+++|
T Consensus 2 ~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~ 56 (435)
T 1dp4_A 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENA 56 (435)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCT
T ss_pred ceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCc
Confidence 68999999987 366766666 9999999999987666 58999999999443
No 12
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=97.68 E-value=0.0001 Score=55.96 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=48.0
Q ss_pred CceEEEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCC-Cchhhhh
Q 034209 40 ADEVHVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ-AQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~S~---iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~-~d~~~aa 96 (101)
..+++||+++.++.. .|+..+.++++|++++|+.....+.+++|.+.|+. +|+-.+.
T Consensus 12 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~ 72 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVI 72 (419)
T ss_dssp -CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHH
T ss_pred CCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHH
Confidence 568999999999874 59999999999999999887666788999999987 5876543
No 13
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=97.68 E-value=8.7e-05 Score=55.58 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=49.5
Q ss_pred CceEEEEEEEecCC--cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCchhhhh
Q 034209 40 ADEVHVGVILDMRS--WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~S--~iGK~a~~AIemAveDfna~~~~~~-TrL~L~~rDS~~d~~~aa 96 (101)
..+++||+++.++. ..|+..+.++++|++++|+....++ .++.|.+.|+++|+-.+.
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~ 62 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAV 62 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHH
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHH
Confidence 45799999999877 4689999999999999999877777 889999999999987654
No 14
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=97.67 E-value=0.00013 Score=54.52 Aligned_cols=57 Identities=9% Similarity=-0.179 Sum_probs=49.2
Q ss_pred CCceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 39 TADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
...+++||+++.++- ..|+..+.++++|++++|+.....+.++.|.+.|+++|+-.+
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~ 63 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANT 63 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHH
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHH
Confidence 456899999999864 478999999999999999987766789999999999998654
No 15
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=97.67 E-value=5.6e-05 Score=56.67 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=46.2
Q ss_pred ceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccC-CCceeEEEEEeecCCCchhhhh
Q 034209 41 DEVHVGVILDMRS---WSGKISNSCISMAIADFYALN-THYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 41 ~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~-~~~~TrL~L~~rDS~~d~~~aa 96 (101)
.+++||++++++- ..|+..+.++++|++++|+.. ...+.+|+|.++|+++|+-.+.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~ 62 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSK 62 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHH
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHH
Confidence 4799999999984 468999999999999998732 2335789999999999987654
No 16
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=97.61 E-value=0.00011 Score=59.11 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=49.5
Q ss_pred CceEEEEEEEecC-------------CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhh
Q 034209 40 ADEVHVGVILDMR-------------SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~-------------S~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa 96 (101)
+..++||+++.+. +..|...+.||++|++++|++...+ +.+|.++++|+.+++..|.
T Consensus 12 ~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~ 82 (555)
T 2e4u_A 12 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYAL 82 (555)
T ss_dssp CCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHH
T ss_pred CCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHH
Confidence 5679999999886 4578889999999999999988777 5899999999999987664
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=97.49 E-value=0.00014 Score=54.76 Aligned_cols=56 Identities=23% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC-chhhhh
Q 034209 39 TADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQA-QIKFFS 96 (101)
Q Consensus 39 ~~~~V~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~-d~~~aa 96 (101)
.+.+|+||++++++ +..|+..+.++++|++++|.. ..+.+++|.++|+++ ||-.+.
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~ngg--i~G~~ielv~~D~~~~~p~~a~ 61 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNK--VAGHTVEFVYRDEVSPNPAQSK 61 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSE--ETTEEEEEEEEECCSSCHHHHH
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCC--CCCEEEEEEEEcCCCCCHHHHH
Confidence 35689999999986 467999999999999999842 334789999999986 775543
No 18
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.49 E-value=0.00013 Score=60.04 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=43.1
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC-chhhhhc
Q 034209 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQA-QIKFFSQ 97 (101)
Q Consensus 42 ~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~-d~~~aa~ 97 (101)
+++||++++++.. ..+.|+++|+||+|++. .+|.+++.|+.+ |+..+..
T Consensus 2 ~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~----~~l~~~~~D~~~~~~~~a~~ 51 (823)
T 3kg2_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE----FRLTPHIDNLEVANSFAVTN 51 (823)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCSS----CEEEEEEEEECTTCHHHHHH
T ss_pred cceEEEEeCCCCh---HHHHHHHHHHHHHhcCC----eEEEEEEEEcCCCChHHHHH
Confidence 6899999999876 88999999999999876 589999999999 8876653
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=97.42 E-value=0.00036 Score=51.18 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=46.3
Q ss_pred eEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 42 EVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 42 ~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+++||+++.++. ..|...+.++++|++++|+.....+.++.|.+.|+++|+-.+
T Consensus 2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~ 58 (356)
T 3ipc_A 2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQG 58 (356)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHH
T ss_pred eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHH
Confidence 689999999764 489999999999999999876555578999999999998654
No 20
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=97.40 E-value=0.00032 Score=52.68 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=46.5
Q ss_pred ceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCC--cee--EEEEEeecCCCchhhh
Q 034209 41 DEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTH--YKT--RLVLHSRDSQAQIKFF 95 (101)
Q Consensus 41 ~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~--~~T--rL~L~~rDS~~d~~~a 95 (101)
.+++||++++++. ..|+..+.++++|++++|+.... .+. ++.|.+.|+++|+-.+
T Consensus 3 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a 64 (391)
T 3eaf_A 3 LTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTA 64 (391)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHH
T ss_pred ccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHH
Confidence 4799999999865 47899999999999999997644 345 8999999999998654
No 21
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=97.38 E-value=0.00027 Score=52.28 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=47.0
Q ss_pred CceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 40 ~~~V~VGvIlDl~---S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
..+++||+++.++ +..|...+.++++|++++|+.....+.++.|.+.|+++|+-.+
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~ 61 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQT 61 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHH
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHH
Confidence 4579999999975 4689999999999999999886666678999999999998654
No 22
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=97.32 E-value=0.00049 Score=54.40 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=48.9
Q ss_pred CceEEEEEEEecCCc-------------chHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhh
Q 034209 40 ADEVHVGVILDMRSW-------------SGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~S~-------------iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa 96 (101)
+..+.||+++.+... .|.....||.+|+|++|+++..+ +.+|.+++.|+.+++-.|.
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~ 84 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYAL 84 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHH
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHH
Confidence 567999999998653 57888999999999999998777 5899999999999986554
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=97.19 E-value=0.00094 Score=48.98 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=47.3
Q ss_pred ceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 41 DEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 41 ~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
.+++||+|+.... ..|.....++++|+++.|+.....+.++.|.+.|+++|+-.+
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~ 60 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQA 60 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHH
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHH
Confidence 4799999999754 579999999999999999887666678999999999998654
No 24
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=97.10 E-value=0.0013 Score=47.69 Aligned_cols=54 Identities=22% Similarity=0.129 Sum_probs=44.7
Q ss_pred eEEEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 42 EVHVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 42 ~V~VGvIlDl~S~---iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+++||+++....+ .|.....++++|++++|+.....+.++.+.+.|+++|+-.+
T Consensus 2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~ 58 (346)
T 1usg_A 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQA 58 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHH
T ss_pred cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHH
Confidence 5899999988643 68999999999999999876444467889999999988544
No 25
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=97.09 E-value=0.0013 Score=48.78 Aligned_cols=55 Identities=29% Similarity=0.350 Sum_probs=44.4
Q ss_pred CceEEEEEEEecCCc---c-hHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 40 ADEVHVGVILDMRSW---S-GKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~S~---i-GK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+.+++||++++++.+ . |+..+.++++|+++++. ...+.++.|.+.|+++|+-.+.
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~g--gi~G~~i~l~~~D~~~~~~~a~ 60 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGG--KVNGKPIEVVYADHQNKADIAA 60 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTS--EETTEEEEEEEEECTTCHHHHH
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCC--CCCCeEEEEEEecCCCCHHHHH
Confidence 357999999998654 4 89999999999999942 2334789999999999986653
No 26
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=97.00 E-value=0.0011 Score=48.91 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=44.6
Q ss_pred CCceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 39 TADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
.+.+++||+++.++- ..|+..+.++++|++++|+ ..+.++.|.+.|+++|+-.+
T Consensus 13 ~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~G~~i~l~~~D~~~~~~~~ 69 (366)
T 3td9_A 13 MRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VLGEEVELVLLDTRSEKTEA 69 (366)
T ss_dssp ---CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ETTEEEEEEEEECTTCHHHH
T ss_pred hcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cCCeEEEEEEecCCCCHHHH
Confidence 466899999999886 4689999999999999998 33578999999999998654
No 27
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=97.00 E-value=0.0011 Score=48.56 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=44.3
Q ss_pred CceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 40 ~~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
..+++||+++.++. ..|...+.++++|+++.|.. ..+.++.|.+.|+++|+-.+
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~--i~G~~i~l~~~D~~~~~~~~ 60 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDT--VAGKKIEVILKDDAAIPDNT 60 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSE--ETTEEEEEEEEECTTCHHHH
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCC--CCCeEEEEEEeCCCCCHHHH
Confidence 46899999999863 56999999999999998752 22368999999999998654
No 28
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=96.95 E-value=0.0011 Score=49.34 Aligned_cols=55 Identities=31% Similarity=0.323 Sum_probs=43.6
Q ss_pred CceEEEEEEEecCCc---c-hHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 40 ADEVHVGVILDMRSW---S-GKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~S~---i-GK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
..+++||++++++.+ . |+..+.++++|+++++. ...+.++.|.+.|+++|+-.+.
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~g--gi~G~~i~l~~~D~~~~~~~a~ 62 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGG--KALGQPVKLVSADYQMKTDVAL 62 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTT--EETTEECEEEEEECTTCHHHHH
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcC--CCCCeEEEEEEeCCCCCHHHHH
Confidence 457999999998654 4 89999999999999943 2334789999999999986654
No 29
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=96.79 E-value=0.0022 Score=50.92 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCceEEEEEEEecC------------C-cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhhc
Q 034209 39 TADEVHVGVILDMR------------S-WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFSQ 97 (101)
Q Consensus 39 ~~~~V~VGvIlDl~------------S-~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa~ 97 (101)
.+..+.||.+|.+. . ..|.....||++|+|++|+++..+ +.+|.++++|+.+++-.|..
T Consensus 10 ~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~ 82 (479)
T 3sm9_A 10 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALE 82 (479)
T ss_dssp ECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHH
T ss_pred cCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHH
Confidence 35679999999874 1 268888999999999999998777 58999999999999977653
No 30
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=96.72 E-value=0.0025 Score=47.73 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=43.5
Q ss_pred CceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 40 ~~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+..++||+++.... ..|.....++++|+++.|+.....+.++.+.+.|+++|+-.+
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~ 63 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRY 63 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHH
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHH
Confidence 45789999998753 478999999999999999876544456888899999987543
No 31
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=96.17 E-value=0.011 Score=43.42 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=43.3
Q ss_pred CceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 40 ~~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
..+++||+++.+.. ..|...+.++++|+++.|.--+ +.++.|.+.|+++|+-.+
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~--g~~~~l~~~d~~~~~~~~ 70 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLG--GRSISFVKVDDESAPPKA 70 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEET--TEEEEEEEEECTTCHHHH
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcC--CEEEEEEEecCCCCHHHH
Confidence 45799999998764 5799999999999999973212 368999999999998654
No 32
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=95.39 E-value=0.0075 Score=44.18 Aligned_cols=50 Identities=8% Similarity=0.163 Sum_probs=41.8
Q ss_pred CceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 40 ~~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+.+++||+++.++. ..|+..+.++++|+++++ +.++.|.+.|+++|+-.+
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------G~~i~l~~~d~~~~~~~~ 77 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKA 77 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET------TEEEEEEEEECTTCHHHH
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC------CEEEEEEEecCCCCHHHH
Confidence 56899999999865 478899999999999873 257999999999998654
No 33
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=95.20 E-value=0.051 Score=43.28 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=46.6
Q ss_pred CCceEEEEEEEecCC-----------------cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCchhhhh
Q 034209 39 TADEVHVGVILDMRS-----------------WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S-----------------~iGK~a~~AIemAveDfna~~~~~-~TrL~L~~rDS~~d~~~aa 96 (101)
.+..+.||.+|.+.+ ..|-....||.+|+|++|+++..+ +.+|.++++|+.+++-.|.
T Consensus 14 ~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~ 89 (496)
T 3ks9_A 14 MDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVAL 89 (496)
T ss_dssp ECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHH
T ss_pred cCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHH
Confidence 355688999987543 245677889999999999988766 4899999999999986654
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=94.96 E-value=0.011 Score=42.82 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=41.3
Q ss_pred CceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhh
Q 034209 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFF 95 (101)
Q Consensus 40 ~~~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~a 95 (101)
+.+++||+++.++. ..|.....++++|+++++ +.++.|.+.|+++|+-.+
T Consensus 5 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------g~~i~l~~~d~~~~~~~~ 57 (362)
T 3snr_A 5 TNEITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAA 57 (362)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET------TEEEEEEEEECTTCHHHH
T ss_pred CCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC------CeEEEEEEecCCCCHHHH
Confidence 56799999998764 468889999999999983 257999999999988544
No 35
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=94.16 E-value=0.027 Score=41.62 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=36.8
Q ss_pred eEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchhhhh
Q 034209 42 EVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIKFFS 96 (101)
Q Consensus 42 ~V~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~~aa 96 (101)
+++||+++.++- ..|+..+.++++|+++ .+++|.+.|+++|+..++
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~g---------~~i~l~~~D~~~~~~~aa 50 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKGN---------STIPVQVFDTSMNSVQDI 50 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHTT---------CCSCEEEEETTTSCHHHH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCCC---------CCceEEEEeCCCCHHHHH
Confidence 578999999854 5699999999999852 346788999999997664
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=81.69 E-value=0.67 Score=35.31 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.9
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchh
Q 034209 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIK 93 (101)
Q Consensus 44 ~VGvIlDl~S---~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~ 93 (101)
+||+++.++- ..|+..+.++++|. .+.+++|.+.|+++++.
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~---------~G~~i~l~~~D~~~~~a 45 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK---------GNSTIPVQVFDTSMNSV 45 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH---------TTCCSCEEEEETTTSCH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc---------cCCCceEEEEECCCChH
Confidence 6999999875 57999999999997 12568899999999983
No 37
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=73.44 E-value=5.5 Score=30.18 Aligned_cols=50 Identities=14% Similarity=-0.090 Sum_probs=28.3
Q ss_pred CceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEee-cCCCchhhhh
Q 034209 40 ADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSR-DSQAQIKFFS 96 (101)
Q Consensus 40 ~~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~r-DS~~d~~~aa 96 (101)
|..++|||||.-++- ..+...|++..|.-+..+ +|+..+. ...+||+.++
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dp~~~~ 52 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHLSV--VPRVELVAMNETDPKSII 52 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------CCS--EEEEEEEEECCCSHHHHH
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccCCc--cceEEEEEecCCCHHHHH
Confidence 668999999977765 778888998888665554 4444433 4566887764
No 38
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=55.55 E-value=21 Score=25.53 Aligned_cols=52 Identities=10% Similarity=-0.053 Sum_probs=32.5
Q ss_pred CCceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCchh
Q 034209 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQAQIK 93 (101)
Q Consensus 39 ~~~~V~VGvIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~~d~~ 93 (101)
...+-.||+|.+.+.+.=-....+|+-++++..- ..+..+.+.+.|+++|+-
T Consensus 5 ~~~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy---~~g~~v~l~~~~~~~~~~ 56 (302)
T 2qh8_A 5 MAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGY---EEGKNLEFDYKTAQGNPA 56 (302)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHHHHHHHTTC---CBTTTEEEEEEECTTCHH
T ss_pred ccCCcEEEEEEeccChhHHHHHHHHHHHHHHcCC---CCCCceEEEEecCCCCHH
Confidence 3457889999888777666666666666655411 012346677788888763
No 39
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=24.02 E-value=51 Score=19.46 Aligned_cols=21 Identities=0% Similarity=0.001 Sum_probs=18.3
Q ss_pred CCcchHHHHHHHHHHHHHHhc
Q 034209 52 RSWSGKISNSCISMAIADFYA 72 (101)
Q Consensus 52 ~S~iGK~a~~AIemAveDfna 72 (101)
+.++.+.+..++..|.++|-.
T Consensus 17 ~~ris~~A~~~l~~a~e~fi~ 37 (68)
T 1b67_A 17 AERVSDDARIALAKVLEEMGE 37 (68)
T ss_dssp CSEECHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 468999999999999999854
No 40
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=23.70 E-value=19 Score=23.51 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHhcchhhh
Q 034209 10 AFFSSLILLIIHLCPSCSEL 29 (101)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~ 29 (101)
.||+.+|++++-+.-+|+.|
T Consensus 35 v~f~~~~~~lv~l~~iG~~L 54 (77)
T 2dw3_A 35 GVFFGTLLLIGFFRVVGRML 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 46778888887776666655
No 41
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=22.36 E-value=45 Score=20.46 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=17.4
Q ss_pred CcchHHHHHHHHHHHHHHhc
Q 034209 53 SWSGKISNSCISMAIADFYA 72 (101)
Q Consensus 53 S~iGK~a~~AIemAveDfna 72 (101)
..+++.++.+|.-+++||-.
T Consensus 21 ~~is~~A~~~i~~~~~~Fi~ 40 (76)
T 3b0c_W 21 LRLAANTDLLVHLSFLLFLH 40 (76)
T ss_dssp CEECTTHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHH
Confidence 46889999999999999954
No 42
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=21.19 E-value=24 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHhcchhhhhhhhcCCCCCCceEEEEE
Q 034209 10 AFFSSLILLIIHLCPSCSELEKVKNNTSFTADEVHVGV 47 (101)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~~~~qn~~~s~~~~V~VGv 47 (101)
.||+.+|++++-+.-+|..|- ....+.|.+...|+
T Consensus 36 v~fl~~~~~lv~l~~iG~~LP---E~Sr~aP~P~~~~~ 70 (82)
T 2nrg_A 36 GVFFGTLLLIGFFRVVGRMLP---IQENQAPAPNITGA 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHSST---TTTTCCSSSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCc---hhcccCCCCccchh
Confidence 477888888887766666553 22223455555554
No 43
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=21.02 E-value=1.5e+02 Score=20.03 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=32.6
Q ss_pred EEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCC
Q 034209 47 VILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ 89 (101)
Q Consensus 47 vIlDl~S~iGK~a~~AIemAveDfna~~~~~~TrL~L~~rDS~ 89 (101)
-|.|..-.....++..|+-+++++..... .++.+.+-+|-
T Consensus 17 ~V~D~A~vLs~~~~~~l~~~l~~le~~t~---~qi~Vvtv~~~ 56 (153)
T 3pvh_A 17 YVVDDAGVLSRVTKSDLKKLLSDLEYRKK---LRLNFITVRKL 56 (153)
T ss_dssp SEEETTCCSCHHHHHHHHHHHHHHHHHHC---CEEEEEEESCC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhhC---CEEEEEEEcCC
Confidence 47899999999999999999999987655 46666666653
No 44
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.50 E-value=1.7e+02 Score=20.98 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=31.0
Q ss_pred CCCceEEEEEEEecCCcchHHHHHHHHHHHHHH-hccCCCceeEEEEEeecCCCchhh
Q 034209 38 FTADEVHVGVILDMRSWSGKISNSCISMAIADF-YALNTHYKTRLVLHSRDSQAQIKF 94 (101)
Q Consensus 38 s~~~~V~VGvIlDl~S~iGK~a~~AIemAveDf-na~~~~~~TrL~L~~rDS~~d~~~ 94 (101)
....+++||++--.+-+.=...+..++-++++- |.. +..+.+.++|.++|.-.
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~----g~nv~~~~~~a~gd~~~ 57 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEE----GKNLEFDYKTAQGNPAI 57 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCB----TTTEEEEEEECTTCHHH
T ss_pred hhcCCceEEEEEeecChhHHHHHHHHHHHHHhhCccc----CCcEEEEEEeCCCCHHH
Confidence 345689999875444333345555566666553 111 13578889999998743
Done!