BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034210
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2GLU9|DNAJ_ANAPZ Chaperone protein DnaJ OS=Anaplasma phagocytophilum (strain HZ)
           GN=dnaJ PE=3 SV=1
          Length = 382

 Score = 29.6 bits (65), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 27  TILKLCHAFSKKIKTIHCQCSDCARSGKYRKSI 59
           TI +LCH  S + + +  +C  CA SG+ R  +
Sbjct: 186 TIEELCHTCSGEGEVVKNKCKRCAGSGRVRNEV 218


>sp|O59830|YCUA_SCHPO Uncharacterized transcriptional regulatory protein C965.10
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=SPCC965.10 PE=4 SV=1
          Length = 525

 Score = 29.3 bits (64), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 14 FILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGK 54
          F+ + +  P   Y  L +C +  KK   +H QC  C ++GK
Sbjct: 7  FVASTVKKPRSRYGCL-ICRSMRKKCDEVHPQCGRCLKAGK 46


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.330    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,922,735
Number of Sequences: 539616
Number of extensions: 896616
Number of successful extensions: 2938
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2934
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)