Query 034210
Match_columns 101
No_of_seqs 100 out of 170
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lif_A Core protein P21; signa 88.7 0.074 2.5E-06 26.3 0.0 21 8-28 3-23 (27)
2 3mk7_C Cytochrome C oxidase, C 49.5 10 0.00035 27.6 2.6 25 8-32 2-26 (311)
3 3arc_E Cytochrome B559 subunit 43.3 19 0.00066 21.8 2.6 27 73-99 29-56 (83)
4 1eys_H Photosynthetic reaction 31.0 44 0.0015 24.3 3.4 20 70-89 12-31 (259)
5 2knc_A Integrin alpha-IIB; tra 29.9 67 0.0023 17.8 3.3 33 1-33 3-35 (54)
6 1rzh_H Reaction center protein 26.1 55 0.0019 23.9 3.2 20 70-89 13-32 (260)
7 2ajj_A NS5A, nonstructural pro 19.8 20 0.00067 17.5 -0.2 6 74-79 23-28 (28)
8 3s8f_C Cytochrome C oxidase po 18.8 92 0.0032 15.7 2.2 13 72-84 17-29 (34)
9 2kzv_A Uncharacterized protein 18.5 19 0.00066 22.0 -0.5 21 77-100 25-45 (92)
10 2wjn_H Reaction center protein 17.0 89 0.003 22.8 2.6 20 70-89 13-33 (258)
No 1
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=88.75 E-value=0.074 Score=26.26 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.0
Q ss_pred CCchhHHHHHHHhhhhhhhHH
Q 034210 8 SQLFPIFILTIMALPLVPYTI 28 (101)
Q Consensus 8 g~tfp~Fvlt~l~lvLiP~T~ 28 (101)
|--|++|+|+++++.++|..-
T Consensus 3 gcsfsiFlLaLlscLt~Pasa 23 (27)
T 2lif_A 3 GFPFSIFLLALLSCITVPVSA 23 (27)
Confidence 556899999999999999853
No 2
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=49.47 E-value=10 Score=27.57 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=17.1
Q ss_pred CCchhHHHHHHHhhhhhhhHHHhhh
Q 034210 8 SQLFPIFILTIMALPLVPYTILKLC 32 (101)
Q Consensus 8 g~tfp~Fvlt~l~lvLiP~T~~~l~ 32 (101)
+++|.+|+..+.+..++=+.+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (311)
T 3mk7_C 2 STFWSGYIALLTLGTIVALFWLIFA 26 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999877776666666655543
No 3
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=43.32 E-value=19 Score=21.80 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=21.1
Q ss_pred HHHHHHHHHH-HHHHHHHhcccccccCC
Q 034210 73 SLVLLWVIMI-ILIYYIKSTSREFLSHS 99 (101)
Q Consensus 73 ~li~GW~l~~-~L~y~i~~t~~~~~~~~ 99 (101)
+.+.||+.+. .|+|.+--+.+.+..|.
T Consensus 29 lFiaGwLFVstGLaYdvFGtPrpneYft 56 (83)
T 3arc_E 29 LFIAGWLFVSTGLAYDVFGTPRPDSYYA 56 (83)
T ss_dssp HHHHHHHHHHTSHHHHHHTCCCTTSSSC
T ss_pred HHHhhhhhhccCcceeccCCCCcccccc
Confidence 4567999884 68899998888777665
No 4
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=30.99 E-value=44 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.713 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034210 70 SNLSLVLLWVIMIILIYYIK 89 (101)
Q Consensus 70 ~~i~li~GW~l~~~L~y~i~ 89 (101)
--++|-+-|+.||.|+|...
T Consensus 12 a~~~~~~fw~ffa~li~yl~ 31 (259)
T 1eys_H 12 AQITIWAFWLFFFGLIIYLR 31 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999998874
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.93 E-value=67 Score=17.84 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=17.6
Q ss_pred CcccccCCCchhHHHHHHHhhhhhhhHHHhhhc
Q 034210 1 MAATEENSQLFPIFILTIMALPLVPYTILKLCH 33 (101)
Q Consensus 1 ~~~YDE~g~tfp~Fvlt~l~lvLiP~T~~~l~~ 33 (101)
|++=+++=..|.+.+..+.++.|+.+-...++|
T Consensus 3 ~~~~~~~vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 3 MGSEERAIPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp TTCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445566666666566555554445543
No 6
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=26.11 E-value=55 Score=23.89 Aligned_cols=20 Identities=30% Similarity=0.873 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034210 70 SNLSLVLLWVIMIILIYYIK 89 (101)
Q Consensus 70 ~~i~li~GW~l~~~L~y~i~ 89 (101)
--++|-+-|+.|+.|+|...
T Consensus 13 Aq~~l~~Fw~ffa~Li~yL~ 32 (260)
T 1rzh_H 13 ASLAIYSFWIFLAGLIYYLQ 32 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44677889999999998874
No 7
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=19.82 E-value=20 Score=17.51 Aligned_cols=6 Identities=50% Similarity=1.115 Sum_probs=4.0
Q ss_pred HHHHHH
Q 034210 74 LVLLWV 79 (101)
Q Consensus 74 li~GW~ 79 (101)
+++||+
T Consensus 23 ~~lgWA 28 (28)
T 2ajj_A 23 IVLGWA 28 (28)
T ss_dssp HHHHCC
T ss_pred HhhccC
Confidence 566885
No 8
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=18.84 E-value=92 Score=15.67 Aligned_cols=13 Identities=15% Similarity=0.700 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 034210 72 LSLVLLWVIMIIL 84 (101)
Q Consensus 72 i~li~GW~l~~~L 84 (101)
+++++.|..+.++
T Consensus 17 ~~I~i~W~~vf~l 29 (34)
T 3s8f_C 17 LTILVFWLGVYAV 29 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHee
Confidence 4566788888644
No 9
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=18.48 E-value=19 Score=22.03 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhcccccccCCC
Q 034210 77 LWVIMIILIYYIKSTSREFLSHSA 100 (101)
Q Consensus 77 GW~l~~~L~y~i~~t~~~~~~~~~ 100 (101)
||+-++-+...|. +..++|||
T Consensus 25 GWa~Lg~vG~~i~---k~~PdFD~ 45 (92)
T 2kzv_A 25 GWAELSAVGSYLA---KNDPSFDP 45 (92)
T ss_dssp SSCBHHHHHHHHH---HHCTTCCT
T ss_pred CcEeHHHHHHHHH---HhCcCCCc
Confidence 7888877777665 44566665
No 10
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=17.02 E-value=89 Score=22.76 Aligned_cols=20 Identities=15% Similarity=0.627 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHH
Q 034210 70 SNLSLVLLWVIMIILI-YYIK 89 (101)
Q Consensus 70 ~~i~li~GW~l~~~L~-y~i~ 89 (101)
--++|-+-|+.||.|+ |...
T Consensus 13 aq~~l~~Fw~ffa~Li~~yl~ 33 (258)
T 2wjn_H 13 AQLVWYAQWLVIWTVVLLYLR 33 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 4567788999999998 6653
Done!