Query 034210
Match_columns 101
No_of_seqs 100 out of 170
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 18:49:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034210.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034210hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 77.0 2.2 0.00016 19.2 3.6 18 72-89 5-22 (26)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 66.4 5.5 0.0004 19.5 3.8 20 70-89 6-25 (37)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 57.5 7.6 0.00055 18.0 3.3 18 70-88 12-29 (32)
4 d2axte1 f.23.38.1 (E:3-84) Cyt 37.8 15 0.0011 20.8 3.0 27 73-99 28-55 (82)
5 d2iuba2 f.17.3.1 (A:286-349) M 37.2 8.5 0.00062 20.3 1.8 17 14-30 7-23 (64)
6 d1q90g_ f.23.26.1 (G:) PetG su 24.1 24 0.0017 16.1 1.8 17 15-31 5-21 (30)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 20.2 39 0.0028 14.8 2.1 8 74-81 2-9 (27)
8 d2h8aa1 f.56.1.1 (A:9-147) Mic 17.9 26 0.0019 21.0 1.6 18 70-87 121-138 (139)
9 d1hn6a_ g.61.1.1 (A:) Apical m 13.5 20 0.0014 21.2 0.1 18 31-48 41-59 (110)
10 d1iwga8 f.35.1.1 (A:513-566,A: 13.4 50 0.0036 21.0 2.2 20 5-24 54-73 (222)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=77.00 E-value=2.2 Score=19.23 Aligned_cols=18 Identities=33% Similarity=0.932 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034210 72 LSLVLLWVIMIILIYYIK 89 (101)
Q Consensus 72 i~li~GW~l~~~L~y~i~ 89 (101)
+.+-+-|+.++.|+|.+.
T Consensus 5 laiw~fw~ffalli~ylq 22 (26)
T d1rzhh2 5 LAIYSFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456678999999999874
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=66.40 E-value=5.5 Score=19.46 Aligned_cols=20 Identities=20% Similarity=0.713 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034210 70 SNLSLVLLWVIMIILIYYIK 89 (101)
Q Consensus 70 ~~i~li~GW~l~~~L~y~i~ 89 (101)
.-+++-+-|+.|+.|++.+.
T Consensus 6 Aql~ly~Fw~FFagLi~YL~ 25 (37)
T d1eysh2 6 AQITIWAFWLFFFGLIIYLR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44677789999999998874
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=57.46 E-value=7.6 Score=18.01 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034210 70 SNLSLVLLWVIMIILIYYI 88 (101)
Q Consensus 70 ~~i~li~GW~l~~~L~y~i 88 (101)
..-++.+||.+-+.| .||
T Consensus 12 sfglifvgwglgall-lki 29 (32)
T d2e74f1 12 SFGLIFVGWGLGVLL-LKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHH-HHH
T ss_pred HhhHHHHHhHHHHHH-hhh
Confidence 456678899998777 554
No 4
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=37.83 E-value=15 Score=20.77 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=20.1
Q ss_pred HHHHHHHHHH-HHHHHHHhcccccccCC
Q 034210 73 SLVLLWVIMI-ILIYYIKSTSREFLSHS 99 (101)
Q Consensus 73 ~li~GW~l~~-~L~y~i~~t~~~~~~~~ 99 (101)
+.+.||+.+. .|+|.+--+.+.+..|.
T Consensus 28 lFiaGwlFVstGLAYdvFGtPrPneYft 55 (82)
T d2axte1 28 LFIAGWLFVSTGLAYDVFGTPRPDSYYA 55 (82)
T ss_dssp HHHHHHHHHHTTHHHHHTTCCCTTCSSC
T ss_pred HHHhhhhheecccchhhcCCCCcccccc
Confidence 4567999874 48899988888766654
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=37.20 E-value=8.5 Score=20.29 Aligned_cols=17 Identities=35% Similarity=0.557 Sum_probs=14.1
Q ss_pred HHHHHHhhhhhhhHHHh
Q 034210 14 FILTIMALPLVPYTILK 30 (101)
Q Consensus 14 Fvlt~l~lvLiP~T~~~ 30 (101)
-.+|+++.+.+|+|+..
T Consensus 7 k~lT~it~iflP~t~i~ 23 (64)
T d2iuba2 7 KVLTIIATIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36899999999999743
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=24.05 E-value=24 Score=16.09 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=11.2
Q ss_pred HHHHHhhhhhhhHHHhh
Q 034210 15 ILTIMALPLVPYTILKL 31 (101)
Q Consensus 15 vlt~l~lvLiP~T~~~l 31 (101)
+++-..+=|||.|+.=+
T Consensus 5 ll~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHHHH
Confidence 35556677889887543
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.24 E-value=39 Score=14.77 Aligned_cols=8 Identities=50% Similarity=0.775 Sum_probs=4.8
Q ss_pred HHHHHHHH
Q 034210 74 LVLLWVIM 81 (101)
Q Consensus 74 li~GW~l~ 81 (101)
+++||+.+
T Consensus 2 ~~lgwv~l 9 (27)
T d2e74h1 2 DVLGWVAL 9 (27)
T ss_dssp HHHHHHHH
T ss_pred cchhHhHH
Confidence 45677654
No 8
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.87 E-value=26 Score=21.04 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034210 70 SNLSLVLLWVIMIILIYY 87 (101)
Q Consensus 70 ~~i~li~GW~l~~~L~y~ 87 (101)
|.++..+||+..++|+++
T Consensus 121 R~~~~~~g~~~~~~m~~~ 138 (139)
T d2h8aa1 121 RGLAFFVGYGVTLSMAYR 138 (139)
T ss_dssp HHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555566666666666554
No 9
>d1hn6a_ g.61.1.1 (A:) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=13.54 E-value=20 Score=21.21 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=8.9
Q ss_pred hhcccccccc-ccccccCc
Q 034210 31 LCHAFSKKIK-TIHCQCSD 48 (101)
Q Consensus 31 l~~~~~~~~~-~~~~~~~~ 48 (101)
++|.+-.+++ ...|+|++
T Consensus 41 ~PRIFIS~DK~SlkCPCeP 59 (110)
T d1hn6a_ 41 APRIFISDDKDSLKCPCDP 59 (110)
T ss_dssp CCSCCCCSCSSSSSCCSSC
T ss_pred eeEEEecCCcccccCCCCh
Confidence 4555433323 35577765
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.40 E-value=50 Score=21.00 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=14.6
Q ss_pred ccCCCchhHHHHHHHhhhhh
Q 034210 5 EENSQLFPIFILTIMALPLV 24 (101)
Q Consensus 5 DE~g~tfp~Fvlt~l~lvLi 24 (101)
||.++....|+++++.++++
T Consensus 54 ~~~~~~~~~~~la~i~i~li 73 (222)
T d1iwga8 54 DSGNQAPSLYAISLIVVFLC 73 (222)
T ss_dssp CCCTTHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 67788878888777766553
Done!