BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034214
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|1VM0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|2Q3V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
 pdb|2Q3V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
          Length = 130

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 68/79 (86%), Gaps = 1/79 (1%)

Query: 9   YLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRP 67
           Y++L +RY QQ+N+VELSALG AIATVVT+ EILKNNG AVEKKI TS VDI+++  GRP
Sbjct: 35  YVNLAKRYXQQYNDVELSALGXAIATVVTVTEILKNNGFAVEKKIXTSIVDIKDDARGRP 94

Query: 68  VQKAKIEILLGKSEKFDEL 86
           VQKAKIEI L KSEKFDEL
Sbjct: 95  VQKAKIEITLVKSEKFDEL 113


>pdb|2HOE|A Chain A, Crystal Structure Of N-Acetylglucosamine Kinase (Tm1224)
          From Thermotoga Maritima At 2.46 A Resolution
          Length = 380

 Score = 26.2 bits (56), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 20 NEVELSA-LGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKI 73
          + VEL+  LG+   TV  IA+I    G+ VE+K +   V       GRP +  KI
Sbjct: 35 SRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGV-------GRPTKSLKI 82


>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
 pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
 pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
 pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
 pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
 pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
          Length = 618

 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 10  LSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGR 66
           L L R + ++++    A+   +A V T  E  KN G A+  +   + +DI+ E+G R
Sbjct: 255 LRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,181,549
Number of Sequences: 62578
Number of extensions: 65854
Number of successful extensions: 181
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 4
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 45 (21.9 bits)