BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034214
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana
           GN=At2g34160 PE=1 SV=1
          Length = 130

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 1/93 (1%)

Query: 9   YLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRP 67
           Y++L +RYMQQ+N+VELSALGMAIATVVT+ EILKNNG AVEKKI TSTVDI+++  GRP
Sbjct: 35  YVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRP 94

Query: 68  VQKAKIEILLGKSEKFDELMAAAEEEAINNEEQ 100
           VQKAKIEI L KSEKFDELMAAA EE  + E Q
Sbjct: 95  VQKAKIEITLVKSEKFDELMAAANEEKEDAEAQ 127


>sp|A5WCT9|MURC_PSYWF UDP-N-acetylmuramate--L-alanine ligase OS=Psychrobacter sp.
          (strain PRwf-1) GN=murC PE=3 SV=1
          Length = 476

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 27 LGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEK 82
          +G+  A +  IAE++KN G  V      S  DI+E    + +Q   IE+ +G   K
Sbjct: 25 IGVGGAGMCGIAEVMKNQGYGV------SGSDIKESPVTKRLQSLGIEVFIGHDSK 74


>sp|Q8TI16|ECFA_METAC Energy-coupling factor transporter ATP-binding protein EcfA
           OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
           2834 / JCM 12185 / C2A) GN=ecfA PE=3 SV=1
          Length = 274

 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 20  NEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62
           +++ L  LG+   +++ +AE LKN+G+AV  + T+S     EE
Sbjct: 224 SDLSLRYLGLTPPSLIELAERLKNHGVAVPWEKTSSPSSFAEE 266


>sp|C5B780|SYP_EDWI9 Proline--tRNA ligase OS=Edwardsiella ictaluri (strain 93-146)
           GN=proS PE=3 SV=1
          Length = 572

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 36  TIAEILKNNGLAVEKKITTSTVDIREETG 64
           TIAE+++ +GL +EK + T  V   EE+G
Sbjct: 262 TIAELVEQHGLPIEKTVKTLLVHASEESG 290


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.127    0.320 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,168,785
Number of Sequences: 539616
Number of extensions: 1146645
Number of successful extensions: 3216
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3208
Number of HSP's gapped (non-prelim): 27
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)