Query 034214
Match_columns 101
No_of_seqs 105 out of 123
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 11:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1581 Ssh10b Archaeal DNA-bi 99.9 3.8E-24 8.2E-29 147.4 8.7 71 9-80 19-91 (91)
2 TIGR00285 DNA-binding protein 99.9 2.8E-22 6.1E-27 137.3 8.8 72 7-79 14-87 (87)
3 PRK04015 DNA/RNA-binding prote 99.9 3.3E-22 7.1E-27 137.8 8.6 74 6-80 16-91 (91)
4 PF01918 Alba: Alba; InterPro 99.0 1.1E-09 2.5E-14 69.5 6.3 46 8-53 14-67 (70)
5 KOG2567 Uncharacterized conser 98.0 5.4E-06 1.2E-10 63.3 3.6 73 9-81 33-116 (179)
6 PF12328 Rpp20: Rpp20 subunit 97.2 0.00061 1.3E-08 50.0 4.9 42 19-61 61-102 (144)
7 PF02780 Transketolase_C: Tran 80.7 4.6 0.0001 27.3 4.8 39 17-55 7-46 (124)
8 COG3967 DltE Short-chain dehyd 70.9 4.2 9.1E-05 32.8 2.8 23 8-30 18-40 (245)
9 COG0504 PyrG CTP synthase (UTP 46.9 20 0.00043 31.9 3.0 32 23-55 10-42 (533)
10 COG3958 Transketolase, C-termi 46.3 29 0.00063 29.0 3.7 30 17-46 190-219 (312)
11 PLN02683 pyruvate dehydrogenas 38.0 48 0.001 27.2 3.8 36 20-55 229-265 (356)
12 CHL00144 odpB pyruvate dehydro 38.0 52 0.0011 26.6 3.9 37 19-55 201-238 (327)
13 cd03113 CTGs CTP synthetase (C 37.4 34 0.00075 27.7 2.8 32 23-55 9-41 (255)
14 PRK11892 pyruvate dehydrogenas 35.5 53 0.0011 28.2 3.8 38 18-55 339-377 (464)
15 PF06418 CTP_synth_N: CTP synt 34.3 31 0.00066 28.3 2.1 32 23-55 10-42 (276)
16 PRK08140 enoyl-CoA hydratase; 33.9 27 0.00058 26.6 1.6 38 1-40 32-69 (262)
17 PLN02790 transketolase 32.4 60 0.0013 28.8 3.7 35 20-54 541-576 (654)
18 PRK06213 enoyl-CoA hydratase; 31.5 38 0.00082 25.4 2.0 38 1-41 30-67 (229)
19 PRK12753 transketolase; Review 30.5 68 0.0015 28.6 3.8 35 20-54 550-585 (663)
20 COG1024 CaiD Enoyl-CoA hydrata 30.3 35 0.00076 25.9 1.7 41 1-42 33-73 (257)
21 PRK09212 pyruvate dehydrogenas 29.0 1.1E+02 0.0023 24.7 4.3 37 19-55 201-238 (327)
22 TIGR00232 tktlase_bact transke 28.0 83 0.0018 27.9 3.8 37 19-55 540-577 (653)
23 PRK08150 enoyl-CoA hydratase; 27.9 46 0.001 25.5 2.0 38 1-41 30-67 (255)
24 PRK05899 transketolase; Review 27.4 84 0.0018 27.4 3.7 37 19-55 510-547 (624)
25 cd06490 p23_NCB5OR p23_like do 26.5 47 0.001 21.6 1.6 11 72-82 70-80 (87)
26 PRK05380 pyrG CTP synthetase; 26.3 61 0.0013 28.7 2.7 32 23-55 11-43 (533)
27 COG0022 AcoB Pyruvate/2-oxoglu 26.2 1E+02 0.0022 25.9 3.8 39 18-56 199-238 (324)
28 PTZ00089 transketolase; Provis 25.9 88 0.0019 27.8 3.6 35 20-55 549-584 (661)
29 KOG0523 Transketolase [Carbohy 25.4 91 0.002 28.4 3.6 35 20-54 506-541 (632)
30 PF12146 Hydrolase_4: Putative 24.4 1.1E+02 0.0023 19.6 3.0 30 20-49 18-47 (79)
31 TIGR00337 PyrG CTP synthase. C 23.8 73 0.0016 28.2 2.7 32 23-55 10-42 (525)
32 PRK07112 polyketide biosynthes 23.1 66 0.0014 24.6 2.1 38 1-41 32-69 (255)
33 PRK13936 phosphoheptose isomer 22.9 2.7E+02 0.0058 20.5 5.3 43 3-45 27-69 (197)
34 PF03793 PASTA: PASTA domain; 22.9 1.7E+02 0.0037 17.1 3.5 49 28-79 8-63 (63)
35 PRK12571 1-deoxy-D-xylulose-5- 22.6 1.2E+02 0.0026 26.9 3.8 35 20-54 505-540 (641)
36 PRK08272 enoyl-CoA hydratase; 22.5 69 0.0015 25.1 2.1 41 1-42 38-78 (302)
37 PRK12754 transketolase; Review 22.4 1.2E+02 0.0025 27.4 3.7 35 20-54 550-585 (663)
38 PTZ00061 DNA-directed RNA poly 22.0 16 0.00035 28.6 -1.5 47 36-82 14-61 (205)
39 PTZ00182 3-methyl-2-oxobutanat 21.4 1.8E+02 0.004 23.8 4.5 37 19-55 233-270 (355)
40 PLN02234 1-deoxy-D-xylulose-5- 21.3 1.3E+02 0.0029 27.1 3.9 74 19-93 544-620 (641)
41 PRK08258 enoyl-CoA hydratase; 21.0 70 0.0015 24.7 1.9 39 1-40 45-83 (277)
42 PLN02327 CTP synthase 20.5 84 0.0018 28.1 2.4 31 23-54 10-41 (557)
43 PF06506 PrpR_N: Propionate ca 20.3 2.2E+02 0.0048 20.4 4.3 47 4-58 18-65 (176)
No 1
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.91 E-value=3.8e-24 Score=147.38 Aligned_cols=71 Identities=32% Similarity=0.446 Sum_probs=65.2
Q ss_pred HHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCe--eEEEEEeeceeeeccCCCCcccccceEEEEEeeC
Q 034214 9 YLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKIEILLGKS 80 (101)
Q Consensus 9 ~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~l--a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~Ks 80 (101)
+-.-+|||+|.+||+|||||+|||+|||+|||+||||+ +.+|+|.++|++++++ +||..++|+|||+|.|.
T Consensus 19 lAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~~-~gr~~~VS~IeI~L~k~ 91 (91)
T COG1581 19 LAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEGE-DGRTRNVSTIEIVLAKK 91 (91)
T ss_pred HHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeecC-CCceeeEEEEEEEEecC
Confidence 44568999999999999999999999999999999999 7899999999999876 48888899999999874
No 2
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.88 E-value=2.8e-22 Score=137.31 Aligned_cols=72 Identities=36% Similarity=0.443 Sum_probs=64.8
Q ss_pred HHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCe--eEEEEEeeceeeeccCCCCcccccceEEEEEee
Q 034214 7 AAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKIEILLGK 79 (101)
Q Consensus 7 ~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~l--a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~K 79 (101)
-.+..-+|||+|.++|.|||||+|||+|||||||+||||+ +.+++|.++|+++.++ .|+..++|+|||+|+|
T Consensus 14 YVlavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~~-~G~~~~VStIEI~l~~ 87 (87)
T TIGR00285 14 YVLAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKSE-QGREVNVSTIEIVLAK 87 (87)
T ss_pred HHHHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeecC-CCceeeEEEEEEEEeC
Confidence 3456678999999999999999999999999999999999 5599999999998875 4888889999999986
No 3
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.87 E-value=3.3e-22 Score=137.75 Aligned_cols=74 Identities=34% Similarity=0.416 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCe--eEEEEEeeceeeeccCCCCcccccceEEEEEeeC
Q 034214 6 VAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKIEILLGKS 80 (101)
Q Consensus 6 ~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~l--a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~Ks 80 (101)
+-.+..-++|++|.++|.|||||+|||+||+|||||||||+ +.+++|.++|+.++++ .|+..++|+|||+|+|.
T Consensus 16 nYV~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~~-~g~~~~VS~IEI~l~k~ 91 (91)
T PRK04015 16 NYVLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTSE-DGRESNVSTIEIVLEKK 91 (91)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeecC-CCcEEEEEEEEEEEecC
Confidence 44566778899999999999999999999999999999999 8899999999999875 47777889999999984
No 4
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.01 E-value=1.1e-09 Score=69.48 Aligned_cols=46 Identities=33% Similarity=0.368 Sum_probs=36.5
Q ss_pred HHHHHHHHh-----ccCCeEEEeecchhHHHHHHHHhhhhcCC---eeEEEEEe
Q 034214 8 AYLSLQRYM-----QQHNEVELSALGMAIATVVTIAEILKNNG---LAVEKKIT 53 (101)
Q Consensus 8 ~~~lak~f~-----~g~~eV~IkArG~AIs~AVdvAEIlkn~~---la~ikkI~ 53 (101)
-+.-+..++ +++++|.|+|+|+||++||++|||+|+++ +..+.++.
T Consensus 14 ~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t 67 (70)
T PF01918_consen 14 YVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKIT 67 (70)
T ss_dssp HHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEE
T ss_pred HHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 344455555 88999999999999999999999999996 45554443
No 5
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=5.4e-06 Score=63.28 Aligned_cols=73 Identities=32% Similarity=0.320 Sum_probs=49.6
Q ss_pred HHHHHHHhcc--CCeEEEeecchhHHHHHHHHhhhhcC--CeeEEEEEee-ceeeecc---CC---CCcccccceEEEEE
Q 034214 9 YLSLQRYMQQ--HNEVELSALGMAIATVVTIAEILKNN--GLAVEKKITT-STVDIRE---ET---GGRPVQKAKIEILL 77 (101)
Q Consensus 9 ~~lak~f~~g--~~eV~IkArG~AIs~AVdvAEIlkn~--~la~ikkI~T-~t~~~~~---e~---~gr~v~kskIEIvL 77 (101)
|.+|+-.+++ +..|+.||.|+||++.|++||||||| +|=.+++|.. +..+.+. ++ -.-..++|.|-|.|
T Consensus 33 i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlL 112 (179)
T KOG2567|consen 33 IEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPTEEGLEPLEVTRHVPMLHILL 112 (179)
T ss_pred HHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhcccccccCccceEEeeccceEEEEE
Confidence 4456665654 89999999999999999999999987 4544555543 2222221 10 11224679999999
Q ss_pred eeCc
Q 034214 78 GKSE 81 (101)
Q Consensus 78 ~Ks~ 81 (101)
.+.+
T Consensus 113 S~de 116 (179)
T KOG2567|consen 113 SLDE 116 (179)
T ss_pred eccc
Confidence 9853
No 6
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=97.23 E-value=0.00061 Score=50.03 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=33.2
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCeeEEEEEeeceeeecc
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIRE 61 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~la~ikkI~T~t~~~~~ 61 (101)
..+|.|+|+|+||.+|+.+|.-++++. --...|+|+|+.+-|
T Consensus 61 ~~~V~v~gtGkAIeKal~la~~Fq~~~-~~~V~V~TgTV~vvD 102 (144)
T PF12328_consen 61 SEEVTVKGTGKAIEKALSLALWFQRKK-GYKVEVRTGTVEVVD 102 (144)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT----EEEEEEEEEEEE
T ss_pred ccEEEEEeccHHHHHHHHHHHHHhhcC-CeEEEEEeceEEEEE
Confidence 379999999999999999999999885 334578888876544
No 7
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=80.66 E-value=4.6 Score=27.30 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=33.6
Q ss_pred ccCCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 17 QQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 17 ~g~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
..-.+|.|=+.|.....|..+|+.|+.+|+ +.+.++++-
T Consensus 7 ~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i 46 (124)
T PF02780_consen 7 REGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTI 46 (124)
T ss_dssp ESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred eCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEE
Confidence 345789999999999999999999999998 777777664
No 8
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=70.88 E-value=4.2 Score=32.80 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.7
Q ss_pred HHHHHHHHhccCCeEEEeecchh
Q 034214 8 AYLSLQRYMQQHNEVELSALGMA 30 (101)
Q Consensus 8 ~~~lak~f~~g~~eV~IkArG~A 30 (101)
|+-|||+|++--++|+|+||-++
T Consensus 18 Gl~lak~f~elgN~VIi~gR~e~ 40 (245)
T COG3967 18 GLALAKRFLELGNTVIICGRNEE 40 (245)
T ss_pred hHHHHHHHHHhCCEEEEecCcHH
Confidence 67899999999999999999764
No 9
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=46.89 E-value=20 Score=31.89 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=26.7
Q ss_pred EEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 23 ~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
++|++|+-|..| ..+-+|++||| ++..||.-.
T Consensus 10 VvSslGKGi~aa-Slg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 10 VVSSLGKGITAA-SLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred eecccccHHHHH-HHHHHHHHCCceEEEEecccc
Confidence 578999999754 78999999999 888887643
No 10
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=46.32 E-value=29 Score=28.98 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=27.3
Q ss_pred ccCCeEEEeecchhHHHHHHHHhhhhcCCe
Q 034214 17 QQHNEVELSALGMAIATVVTIAEILKNNGL 46 (101)
Q Consensus 17 ~g~~eV~IkArG~AIs~AVdvAEIlkn~~l 46 (101)
..-..+.|=|-|--.++|+.+|++|+.+|+
T Consensus 190 rdG~D~tiiA~G~mv~~al~AA~~L~~~GI 219 (312)
T COG3958 190 RDGSDLTIIATGVMVAEALEAAEILKKEGI 219 (312)
T ss_pred ecCCceEEEecCcchHHHHHHHHHHHhcCC
Confidence 345788999999999999999999999999
No 11
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=38.05 E-value=48 Score=27.24 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=31.8
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
++|.|=|.|.....|.++|+.|+++|+ +++.+..+-
T Consensus 229 ~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~i 265 (356)
T PLN02683 229 KDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSI 265 (356)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 688999999999999999999999998 777777664
No 12
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=38.02 E-value=52 Score=26.63 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
-++|.|=|-|.....|..+|+.|+.+|+ +++.+..|=
T Consensus 201 G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~i 238 (327)
T CHL00144 201 GNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISL 238 (327)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcC
Confidence 3789999999999999999999999998 777776663
No 13
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=37.38 E-value=34 Score=27.72 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=26.6
Q ss_pred EEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 23 ~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
++|++|+-|..| .++-+|+++|+ ++..||.-.
T Consensus 9 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~K~DpY 41 (255)
T cd03113 9 VVSSLGKGITAA-SLGRLLKARGLKVTAQKLDPY 41 (255)
T ss_pred cccCcchHHHHH-HHHHHHHHCCCeEEEEeeccc
Confidence 578999998754 78899999999 888888753
No 14
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=35.55 E-value=53 Score=28.19 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=33.4
Q ss_pred cCCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 18 QHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 18 g~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
.-+.|.|=+.|.....|..+|+.|+.+|+ +.+.+.+|-
T Consensus 339 ~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tl 377 (464)
T PRK11892 339 EGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTI 377 (464)
T ss_pred cCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 34689999999999999999999999999 888777764
No 15
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=34.30 E-value=31 Score=28.35 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=24.7
Q ss_pred EEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 23 ~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
++|++|+-|..| .++-+|+.+|+ ++..||.-.
T Consensus 10 V~SglGKGi~aa-Sig~lLk~~G~~V~~~K~DPY 42 (276)
T PF06418_consen 10 VVSGLGKGITAA-SIGRLLKSRGYKVTMIKIDPY 42 (276)
T ss_dssp SSSSSSHHHHHH-HHHHHHHCTT--EEEEEEE-S
T ss_pred ccccccHHHHHH-HHHHHHHhCCeeeeeeeeccc
Confidence 368899988644 78999999999 889998763
No 16
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=33.93 E-value=27 Score=26.62 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEI 40 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEI 40 (101)
|+++|..++.-+. .....-|+|+|.|++.|.-.|+.++
T Consensus 32 ~~~~l~~~~~~~~--d~~v~~vVl~g~g~~F~aG~Dl~~~ 69 (262)
T PRK08140 32 MHRELREALDQVE--DDGARALLLTGAGRGFCAGQDLADR 69 (262)
T ss_pred HHHHHHHHHHHhc--CCCceEEEEECCCCCcccCcChHHH
Confidence 4677777777665 5667889999999999998998875
No 17
>PLN02790 transketolase
Probab=32.41 E-value=60 Score=28.77 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=30.2
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
.+|.|=|-|.-...|+.+|++|+++|+ +.+.+..+
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ 576 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVC 576 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 689999999999999999999999998 66655544
No 18
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=31.49 E-value=38 Score=25.35 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEIL 41 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIl 41 (101)
|+++|..++..+. ....-|+|+|.|++.|.-.|..++.
T Consensus 30 ~~~~l~~~l~~~~---~~~~vvvl~g~g~~F~~G~Dl~~~~ 67 (229)
T PRK06213 30 MIDALNAALDQAE---DDRAVVVITGQPGIFSGGFDLKVMT 67 (229)
T ss_pred HHHHHHHHHHHhh---ccCcEEEEeCCCCceEcCcCHHHHh
Confidence 4677888887665 5668899999999988888887754
No 19
>PRK12753 transketolase; Reviewed
Probab=30.46 E-value=68 Score=28.56 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=29.6
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
.+|.|=|-|.-...|+.+|++|+++|+ +.+....+
T Consensus 550 ~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~ 585 (663)
T PRK12753 550 PDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPS 585 (663)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEECCc
Confidence 389999999999999999999999998 55555444
No 20
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=30.27 E-value=35 Score=25.91 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILK 42 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlk 42 (101)
|+++|.+|+..+.+= ....-|+|.|-|++.|---|+.++..
T Consensus 33 ~~~~l~~al~~~~~d-~~vr~vvltg~g~~FsaG~Dl~~~~~ 73 (257)
T COG1024 33 MLDELAEALDEAEAD-PDVRVVVLTGAGKAFSAGADLKELLS 73 (257)
T ss_pred HHHHHHHHHHHHhhC-CCeEEEEEECCCCceecccCHHHHhc
Confidence 567888888877765 67889999999999999999999875
No 21
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=28.97 E-value=1.1e+02 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=32.5
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
-.++.|=+-|.....|..+|+.|+++|+ +.+.++.+-
T Consensus 201 G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l 238 (327)
T PRK09212 201 GSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTL 238 (327)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 3688999999999999999999999998 777777764
No 22
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=27.98 E-value=83 Score=27.92 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
-.+|.|=|-|.-...|..+|++|+.+|+ +.+.++.+-
T Consensus 540 g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~i 577 (653)
T TIGR00232 540 GPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSF 577 (653)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccC
Confidence 3689999999999999999999999998 777766654
No 23
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=27.88 E-value=46 Score=25.45 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEIL 41 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIl 41 (101)
|+++|..++.-.. ....-|+|+|-|++.|.-.|+.++.
T Consensus 30 ~~~~l~~al~~~~---~~vr~vvltg~g~~F~aG~Dl~~~~ 67 (255)
T PRK08150 30 LIAALRAAFARLP---EGVRAVVLHGEGDHFCAGLDLSELR 67 (255)
T ss_pred HHHHHHHHHHHhh---cCCeEEEEECCCCceecCcCHHHHh
Confidence 5677888887553 6678899999999988888888753
No 24
>PRK05899 transketolase; Reviewed
Probab=27.36 E-value=84 Score=27.39 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
-+.|.|=|.|.-...|..+|+.|++.|+ +.+..+.|-
T Consensus 510 G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~si 547 (624)
T PRK05899 510 DPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPST 547 (624)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCc
Confidence 3789999999999999999999999998 777666654
No 25
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=26.54 E-value=47 Score=21.64 Aligned_cols=11 Identities=55% Similarity=0.745 Sum_probs=9.5
Q ss_pred eEEEEEeeCcc
Q 034214 72 KIEILLGKSEK 82 (101)
Q Consensus 72 kIEIvL~Ks~~ 82 (101)
||||+|+|.+.
T Consensus 70 KVEI~L~K~e~ 80 (87)
T cd06490 70 KIELVLKKKEP 80 (87)
T ss_pred eEEEEEEcCCC
Confidence 99999999753
No 26
>PRK05380 pyrG CTP synthetase; Validated
Probab=26.35 E-value=61 Score=28.73 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=26.6
Q ss_pred EEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 23 ~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
++|++|+-|..| .++-+|+++|| ++..||.-.
T Consensus 11 v~S~lGKGi~~a-s~g~ll~~~g~~v~~~K~DpY 43 (533)
T PRK05380 11 VVSSLGKGITAA-SLGRLLKARGLKVTIQKLDPY 43 (533)
T ss_pred cccCcchHHHHH-HHHHHHHhCCCceEEEeeccc
Confidence 578999988654 78899999999 888888653
No 27
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=26.21 E-value=1e+02 Score=25.94 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=35.0
Q ss_pred cCCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeece
Q 034214 18 QHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTST 56 (101)
Q Consensus 18 g~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~t 56 (101)
.-+.|.|=+-|.....+...||-|..+|+ +.+.+.+|-.
T Consensus 199 eG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~ 238 (324)
T COG0022 199 EGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLS 238 (324)
T ss_pred cCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccC
Confidence 34789999999999999999999999999 8899988853
No 28
>PTZ00089 transketolase; Provisional
Probab=25.92 E-value=88 Score=27.78 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=30.2
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
.+|.|=|.|.-+..|..+|+.|++ |+ +.+.+..+-
T Consensus 549 ~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~i 584 (661)
T PTZ00089 549 PQLILVASGSEVSLCVEAAKALSK-ELNVRVVSMPCW 584 (661)
T ss_pred CCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEeCCCc
Confidence 689999999999999999999999 98 666665553
No 29
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=25.45 E-value=91 Score=28.43 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=30.3
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
++|.|=|-|.....+..+||.|..+|+ +++.+-.|
T Consensus 506 ~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~ 541 (632)
T KOG0523|consen 506 PDVILIGTGSEVQECLEAAELLSEDGIKVRVVDPFT 541 (632)
T ss_pred CCEEEEeccHHHHHHHHHHHHHHhcCceEEEecccc
Confidence 599999999999999999999999999 66555444
No 30
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=24.43 E-value=1.1e+02 Score=19.60 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.7
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCeeEE
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGLAVE 49 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~la~i 49 (101)
--+.++|+|.-..+--.+|+-|..+|+...
T Consensus 18 ~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~ 47 (79)
T PF12146_consen 18 VVVIVHGFGEHSGRYAHLAEFLAEQGYAVF 47 (79)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHhCCCEEE
Confidence 357899999999999999999999999654
No 31
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=23.81 E-value=73 Score=28.20 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=26.7
Q ss_pred EEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 23 ~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
++|++|+-|..| .++-+|+++|+ ++..||.-.
T Consensus 10 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~K~DpY 42 (525)
T TIGR00337 10 VVSSLGKGITAA-SIGRLLKARGLKVTIIKIDPY 42 (525)
T ss_pred cccCcchHHHHH-HHHHHHHhCCCceEEEeeccc
Confidence 579999988654 78899999999 888888753
No 32
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=23.13 E-value=66 Score=24.56 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEIL 41 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIl 41 (101)
|+++|..++.... ....-|+|+|-|++.|.-.|+.++.
T Consensus 32 ~~~~L~~~l~~~~---~~vr~vVl~g~g~~FsaG~Dl~~~~ 69 (255)
T PRK07112 32 LIAECMDVLDRCE---HAATIVVLEGLPEVFCFGADFSAIA 69 (255)
T ss_pred HHHHHHHHHHHhh---cCceEEEEEcCCCCcccCcCHHHHh
Confidence 4677888887655 4678899999999988888888764
No 33
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.94 E-value=2.7e+02 Score=20.53 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCC
Q 034214 3 DDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNG 45 (101)
Q Consensus 3 ~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~ 45 (101)
+.+.+++.+..+.+...+.|.+-|.|..-..|-+.+.-+..++
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~ 69 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRF 69 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCcc
Confidence 3577888899999999999999999999888988887666443
No 34
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=22.92 E-value=1.7e+02 Score=17.15 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=23.5
Q ss_pred chhHHHHHHHHhhhhcCCe-eEEEEE-----eeceeeeccCCCCcccc-cceEEEEEee
Q 034214 28 GMAIATVVTIAEILKNNGL-AVEKKI-----TTSTVDIREETGGRPVQ-KAKIEILLGK 79 (101)
Q Consensus 28 G~AIs~AVdvAEIlkn~~l-a~ikkI-----~T~t~~~~~e~~gr~v~-kskIEIvL~K 79 (101)
|+....| ..+|++.|| +....- .-+++--++-..|..+. -++|++.+.|
T Consensus 8 g~~~~~a---~~~l~~~g~~~~~~~~~~~~~~~g~V~~Q~P~~G~~v~~~~~I~l~vsk 63 (63)
T PF03793_consen 8 GMTYDEA---KSILEAAGLTVNVVEEYSDSVPKGTVISQSPAPGTKVKKGSKITLTVSK 63 (63)
T ss_dssp TSBHHHH---HHHHHHTT-EEEEEEEEESSSSTTSEEEESSCTTSEEETTSEEEEEEEE
T ss_pred CCcHHHH---HHHHHHCCCEEEEEEEecCCCCCCEEEEEECCCCCCcCCCCEEEEEEeC
Confidence 4444444 457888888 222221 11233333333455543 3677777765
No 35
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=22.59 E-value=1.2e+02 Score=26.88 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=31.6
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
++|.|=|-|.-...|..+|+.|+++|+ +.+.+..+
T Consensus 505 ~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~ 540 (641)
T PRK12571 505 PDVAILSVGAHLHECLDAADLLEAEGISVTVADPRF 540 (641)
T ss_pred CCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 689999999999999999999999998 88877765
No 36
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=22.47 E-value=69 Score=25.13 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILK 42 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlk 42 (101)
|+++|.+++.-+.. .....-|+|+|.|++.|.-.|+.++..
T Consensus 38 m~~eL~~al~~~~~-d~~vrvvVl~G~G~~FcaG~Dl~~~~~ 78 (302)
T PRK08272 38 TPLELRAAVERADL-DPGVHVILVSGAGKGFCAGYDLSAYAE 78 (302)
T ss_pred HHHHHHHHHHHHhh-CCCceEEEEEcCCCCcccCcCHHHHhh
Confidence 46777777765432 345688999999999999999988753
No 37
>PRK12754 transketolase; Reviewed
Probab=22.39 E-value=1.2e+02 Score=27.35 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=29.7
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
..|.|=|-|.-...|+.+|+.|+.+|+ +.+...-+
T Consensus 550 ~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s 585 (663)
T PRK12754 550 PELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPS 585 (663)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCc
Confidence 389999999999999999999999998 55555444
No 38
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=21.97 E-value=16 Score=28.64 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=27.3
Q ss_pred HHHhhhhcCCe-eEEEEEeeceeeeccCCCCcccccceEEEEEeeCcc
Q 034214 36 TIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEK 82 (101)
Q Consensus 36 dvAEIlkn~~l-a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~Ks~~ 82 (101)
++.|||+.||| +....|..+..+....-...+...+++.|...+..+
T Consensus 14 Tv~eMl~DRGY~V~~~el~~s~~~F~~~~~~~~~~r~~l~~~~~~~~d 61 (205)
T PTZ00061 14 TCCEMLEDRGYIITSQEKLETFATFKERFEENERLRSRMLMVASHKTD 61 (205)
T ss_pred HHHHHHhccCCccCHHHHcCCHHHHHHHhccCcccHhHcEEEeecCCC
Confidence 68899999999 556666655444332111112234666777766554
No 39
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=21.44 E-value=1.8e+02 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=32.0
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
-.++.|=+-|.....|..+++.|+.+|+ +.+.++.+-
T Consensus 233 G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l 270 (355)
T PTZ00182 233 GKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSL 270 (355)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeC
Confidence 3678999999999999999999999998 777777664
No 40
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=21.32 E-value=1.3e+02 Score=27.06 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=46.4
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeeceeeeccCCCCcccccceEEEEEe--eCccHHHHHHHHHHh
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKAKIEILLG--KSEKFDELMAAAEEE 93 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~--Ks~~Fd~~~~~~~~~ 93 (101)
-+.|.|=|-|.-...|..+|+.|+++|+ +++.+.++-.. ++.+.--+-.+..+.-|+++ ....|-+.+++.-.+
T Consensus 544 G~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikP-lD~~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~~l~e 620 (641)
T PLN02234 544 GERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKP-LDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAL 620 (641)
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCC-CCHHHHHHHHHhCCEEEEECCCCCCcHHHHHHHHHHH
Confidence 3679999999999999999999999998 88888776432 22111001111233445554 235666655555433
No 41
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=21.02 E-value=70 Score=24.73 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEI 40 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEI 40 (101)
|+++|..++.-+.. .....-|+|+|-|++.|.-.|+.++
T Consensus 45 ~~~eL~~~l~~~~~-d~~vr~vVltg~g~~FsaG~Dl~~~ 83 (277)
T PRK08258 45 SYAELRDLFRELVY-ADDVKAVVLTGAGGNFCSGGDVHEI 83 (277)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEEeCCCCCcccccCHHHH
Confidence 45677777765542 3456789999999998888888775
No 42
>PLN02327 CTP synthase
Probab=20.48 E-value=84 Score=28.09 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=25.9
Q ss_pred EEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 23 ~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
++|++|+-|..| .+.-+||.+|+ ++..||.-
T Consensus 10 V~S~lGKGi~~a-Sig~ll~~~g~~V~~~K~DP 41 (557)
T PLN02327 10 VVSGLGKGVTAS-SIGVLLKACGLRVTSIKIDP 41 (557)
T ss_pred cccCcchHHHHH-HHHHHHHHCCCceeeeeccc
Confidence 579999988754 78899999999 88888764
No 43
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=20.27 E-value=2.2e+02 Score=20.45 Aligned_cols=47 Identities=23% Similarity=0.195 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHH-hccCCeEEEeecchhHHHHHHHHhhhhcCCeeEEEEEeeceee
Q 034214 4 DLVAAYLSLQRY-MQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVD 58 (101)
Q Consensus 4 ~~~~~~~lak~f-~~g~~eV~IkArG~AIs~AVdvAEIlkn~~la~ikkI~T~t~~ 58 (101)
++..|+..|+++ .+..-+|.|+.=| +|+.||+.+=..+..|..+..+
T Consensus 18 ~~e~~v~~a~~~~~~~g~dViIsRG~--------ta~~lr~~~~iPVV~I~~s~~D 65 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGADVIISRGG--------TAELLRKHVSIPVVEIPISGFD 65 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-SEEEEEHH--------HHHHHHCC-SS-EEEE---HHH
T ss_pred cHHHHHHHHHHhhHhcCCeEEEECCH--------HHHHHHHhCCCCEEEECCCHhH
Confidence 467889999999 6777788887554 5789999887777788777654
Done!