Query 034214
Match_columns 101
No_of_seqs 105 out of 123
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vm0_A Unknown protein; struct 100.0 6.3E-34 2.1E-38 205.2 9.1 95 7-101 34-130 (130)
2 1nfj_A ALBA, conserved hypothe 99.9 1.6E-21 5.5E-26 131.7 9.1 70 9-79 18-89 (89)
3 2bky_A DNA/RNA-binding protein 99.8 3.5E-21 1.2E-25 132.0 9.3 71 9-80 24-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.8 2.8E-21 9.7E-26 130.0 8.2 69 9-79 17-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.8 4.4E-21 1.5E-25 131.0 9.0 71 8-79 18-90 (91)
6 2h9u_A DNA/RNA-binding protein 99.8 1.5E-20 5.2E-25 129.9 8.4 74 9-82 21-100 (102)
7 2bky_X DNA/RNA-binding protein 99.8 9.4E-20 3.2E-24 123.5 7.9 68 7-80 19-88 (89)
8 3iab_B Ribonucleases P/MRP pro 97.5 0.00018 6.3E-09 52.2 6.3 43 18-61 59-101 (140)
9 3iab_A Ribonucleases P/MRP pro 85.9 1.6 5.5E-05 32.1 5.5 68 17-84 74-149 (158)
10 3ju3_A Probable 2-oxoacid ferr 55.9 15 0.0005 24.2 3.9 38 19-56 13-51 (118)
11 1umd_B E1-beta, 2-OXO acid deh 45.6 25 0.00085 26.5 4.2 36 20-55 203-239 (324)
12 2e6k_A Transketolase; structur 41.0 25 0.00084 29.6 3.9 35 20-54 542-577 (651)
13 1w85_B Pyruvate dehydrogenase 39.5 32 0.0011 26.0 4.0 36 20-55 202-238 (324)
14 2vo1_A CTP synthase 1; pyrimid 39.2 40 0.0014 26.8 4.6 46 8-54 10-63 (295)
15 1gpu_A Transketolase; transfer 38.5 31 0.0011 29.2 4.1 35 20-54 555-590 (680)
16 3mos_A Transketolase, TK; thia 38.3 32 0.0011 28.8 4.1 36 21-56 500-536 (616)
17 3rim_A Transketolase, TK; TPP, 37.9 35 0.0012 29.4 4.4 34 21-54 586-620 (700)
18 3l84_A Transketolase; TKT, str 37.8 32 0.0011 29.1 4.1 37 19-55 525-562 (632)
19 3m49_A Transketolase; alpha-be 37.6 31 0.0011 29.5 4.1 34 21-54 578-612 (690)
20 1itz_A Transketolase; calvin c 37.5 32 0.0011 29.1 4.1 36 20-55 563-599 (675)
21 2r8o_A Transketolase 1, TK 1; 37.1 26 0.0009 29.5 3.5 36 20-55 550-586 (669)
22 3nva_A CTP synthase; rossman f 33.5 19 0.00064 30.6 2.0 32 23-55 12-44 (535)
23 3uk1_A Transketolase; structur 33.3 39 0.0013 29.1 4.0 36 20-55 598-634 (711)
24 2c5m_A CTP synthase; cytidine 31.4 20 0.00067 28.6 1.7 40 15-55 19-64 (294)
25 2ozl_B PDHE1-B, pyruvate dehyd 30.8 56 0.0019 25.1 4.2 36 20-55 217-253 (341)
26 3kom_A Transketolase; rossmann 29.9 34 0.0012 29.0 3.0 36 20-55 550-586 (663)
27 2bfd_B 2-oxoisovalerate dehydr 29.6 46 0.0016 25.5 3.5 36 20-55 220-257 (342)
28 3hp0_A Putative polyketide bio 25.6 29 0.001 25.7 1.7 40 1-42 35-74 (267)
29 3isa_A Putative enoyl-COA hydr 22.8 25 0.00086 25.7 0.8 39 1-41 35-73 (254)
30 2q5c_A NTRC family transcripti 21.3 1.2E+02 0.004 21.4 4.1 46 4-58 37-82 (196)
31 2qtc_A Pyruvate dehydrogenase 21.2 81 0.0028 27.9 3.8 36 20-55 724-761 (886)
32 1vh6_A Flagellar protein FLIS; 20.9 49 0.0017 23.0 2.0 39 1-42 29-67 (145)
No 1
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=100.00 E-value=6.3e-34 Score=205.20 Aligned_cols=95 Identities=69% Similarity=0.858 Sum_probs=75.8
Q ss_pred HHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCeeEEEEEeeceeeeccCCCCcccccceEEEEEeeCccHHHH
Q 034214 7 AAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDEL 86 (101)
Q Consensus 7 ~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~la~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~Ks~~Fd~~ 86 (101)
.-++++++|++|+++|+|||||+|||+||+||||||||||+++++|.|+|++++++.+||++++|||||+|+|+++||++
T Consensus 34 nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~~~~r~v~~skIEI~L~k~~~fd~~ 113 (130)
T 1vm0_A 34 FYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDEL 113 (130)
T ss_dssp HHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEEEEEEEEEEEECTTHHHH
T ss_pred eHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccCCCCcccccceEEEEEEecCcHHHH
Confidence 45789999999999999999999999999999999999999999999999999888778999999999999999999999
Q ss_pred HHHHHHhh--hhccccC
Q 034214 87 MAAAEEEA--INNEEQS 101 (101)
Q Consensus 87 ~~~~~~~~--~~~~~~~ 101 (101)
|+++++++ +++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~~ 130 (130)
T 1vm0_A 114 MAAANEEKEDAETQVQN 130 (130)
T ss_dssp HHHC-------------
T ss_pred HHHhhhhhcccccccCC
Confidence 99999988 4666653
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.86 E-value=1.6e-21 Score=131.68 Aligned_cols=70 Identities=33% Similarity=0.452 Sum_probs=62.7
Q ss_pred HHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCe--eEEEEEeeceeeeccCCCCcccccceEEEEEee
Q 034214 9 YLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKIEILLGK 79 (101)
Q Consensus 9 ~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~l--a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~K 79 (101)
...-++|++|+++|+|||||+|||+||++|||||+||+ +.+++|.|+|+.++++. |++.++|+|||+|+|
T Consensus 18 ~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e~-g~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 18 LATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESEQ-GRRSNVSTIEIVLAK 89 (89)
T ss_dssp HHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCBT-TBCCEEEEEEEEEEC
T ss_pred HHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcCC-CcEEEeeEEEEEEEC
Confidence 34447799999999999999999999999999999998 67899999999998764 788888999999986
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.85 E-value=3.5e-21 Score=132.01 Aligned_cols=71 Identities=28% Similarity=0.336 Sum_probs=63.2
Q ss_pred HHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCee---EEEEEeeceeeeccCCCCcccccceEEEEEeeC
Q 034214 9 YLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGLA---VEKKITTSTVDIREETGGRPVQKAKIEILLGKS 80 (101)
Q Consensus 9 ~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~la---~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~Ks 80 (101)
...-++|++|+++|+|||||+|||+||+|||||||||+. .+++|.|+|+.+.++. |++.++|+|||+|.|.
T Consensus 24 ~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e~-G~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 24 LAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQD-GRQSRVSTIEIAIRKK 97 (97)
T ss_dssp HHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEETT-SCEEEEEEEEEEEEEC
T ss_pred HHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecCC-CcEEEeeEEEEEEEcC
Confidence 344578999999999999999999999999999999994 4799999999998764 8888889999999974
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.85 E-value=2.8e-21 Score=130.00 Aligned_cols=69 Identities=33% Similarity=0.448 Sum_probs=56.6
Q ss_pred HHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCe--eEEEEEeeceeeeccCCCCcccccceEEEEEee
Q 034214 9 YLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKIEILLGK 79 (101)
Q Consensus 9 ~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~l--a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~K 79 (101)
...-++|++| ++|+|||||+|||+||++|||||+||+ +.+++|.|+|+.+.++. |++.++|+|||+|+|
T Consensus 17 ~~~~~~l~~g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e~-g~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 17 VAVLTQLTSN-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNPD-GREVNVSTIEIVLAK 87 (87)
T ss_dssp HHHHHHHHHC-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCEEEEEEEEEC
T ss_pred HHHHHHhcCC-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcCC-CcEEEeeEEEEEEEC
Confidence 4445789999 999999999999999999999999998 67899999999988764 777788999999986
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.85 E-value=4.4e-21 Score=131.00 Aligned_cols=71 Identities=30% Similarity=0.345 Sum_probs=64.3
Q ss_pred HHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCe--eEEEEEeeceeeeccCCCCcccccceEEEEEee
Q 034214 8 AYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKIEILLGK 79 (101)
Q Consensus 8 ~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~l--a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~K 79 (101)
.+..-++|++|+++|.|||||+|||+|||||||+|+||+ +.+++|.++|+.++++. |+..++|+|||+|+|
T Consensus 18 V~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~e~-G~~r~VS~IeI~L~k 90 (91)
T 3toe_A 18 VLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGNE-GTATNVSAIEIQLRK 90 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECTT-SSEEEEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeecCC-CceeEeeEEEEEEEC
Confidence 445567899999999999999999999999999999999 88999999999988654 777788999999987
No 6
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.83 E-value=1.5e-20 Score=129.93 Aligned_cols=74 Identities=27% Similarity=0.276 Sum_probs=64.5
Q ss_pred HHHH-HHHhccCCeEEEeecchhHHHHHHHHhhhhcCCe--eEEEEEeeceeeeccCC-CCc--ccccceEEEEEeeCcc
Q 034214 9 YLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREET-GGR--PVQKAKIEILLGKSEK 82 (101)
Q Consensus 9 ~~la-k~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~l--a~ikkI~T~t~~~~~e~-~gr--~v~kskIEIvL~Ks~~ 82 (101)
.+.. ++|++|+++|.|||||+|||+||++||||||||+ +.+++|.++|+++.++- .|+ +.++|+|+|+|.|.|.
T Consensus 21 ~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~~~r~vS~IeI~Lsk~~~ 100 (102)
T 2h9u_A 21 LAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQTRTRRVSSIEICLEKAGE 100 (102)
T ss_dssp HHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSS
T ss_pred HHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCccceeEeeeEEEEEEccCC
Confidence 4445 7899999999999999999999999999999998 77899999999987651 365 6788999999999874
No 7
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.80 E-value=9.4e-20 Score=123.46 Aligned_cols=68 Identities=19% Similarity=0.130 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCe--eEEEEEeeceeeeccCCCCcccccceEEEEEeeC
Q 034214 7 AAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKIEILLGKS 80 (101)
Q Consensus 7 ~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~l--a~ikkI~T~t~~~~~e~~gr~v~kskIEIvL~Ks 80 (101)
.....-++|++|.+||.|||||+|||+|||+|||+|+||+ +.+++|.++|++ +++| ++|.|||+|.|+
T Consensus 19 YV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~----~~~r--~VS~IeI~L~k~ 88 (89)
T 2bky_X 19 HVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV----RDRR--RISYILLRLKRV 88 (89)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE----ETTE--EEEEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc----Ccce--EeeeEEEEEEec
Confidence 3445568999999999999999999999999999999999 789999999885 2344 569999999985
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00018 Score=52.16 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=35.7
Q ss_pred cCCeEEEeecchhHHHHHHHHhhhhcCCeeEEEEEeeceeeecc
Q 034214 18 QHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIRE 61 (101)
Q Consensus 18 g~~eV~IkArG~AIs~AVdvAEIlkn~~la~ikkI~T~t~~~~~ 61 (101)
+..+|.|+|+|+||.+|+.+|--++.++- -...|.|+|+.+-|
T Consensus 59 ~~~eV~v~GmGkAIeKal~lAl~fq~~~~-~~V~V~T~TV~vvD 101 (140)
T 3iab_B 59 GSSYVAVLGMGKAVEKTLALGCHFQDQKN-KKIEVYTKTIEVLD 101 (140)
T ss_dssp TCSEEEEEEEGGGHHHHHHHHHHHHHTTC-CCEEEEEEEEEEEE
T ss_pred CCcEEEEEechHHHHHHHHHHHHHhhcCC-EEEEEEeceEEEEE
Confidence 68999999999999999999999999753 33458888876543
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=85.90 E-value=1.6 Score=32.06 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=44.0
Q ss_pred ccCCeEEEeecchhHHHHHHHHhhhhcCC------eeEEEEEeecee--eeccCCCCcccccceEEEEEeeCccHH
Q 034214 17 QQHNEVELSALGMAIATVVTIAEILKNNG------LAVEKKITTSTV--DIREETGGRPVQKAKIEILLGKSEKFD 84 (101)
Q Consensus 17 ~g~~eV~IkArG~AIs~AVdvAEIlkn~~------la~ikkI~T~t~--~~~~e~~gr~v~kskIEIvL~Ks~~Fd 84 (101)
.+.+-|-|.+.|..|.+++.+.||+|.+. |-.--+...... ...+|--.+++++|-+-+++..++.+|
T Consensus 74 ~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~grNELle~r~~vPILi~~i~~~~~~~ 149 (158)
T 3iab_A 74 GLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKREGRNELQEERLKVPILVTMVSDSEIID 149 (158)
T ss_dssp TCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-------CCCCEEEEEEEEEEESSSSCC
T ss_pred ccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCccccHHHHhhcCCCEEEEEEecccccc
Confidence 56788999999999999999999999833 333333322211 111232345567888888888876654
No 10
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=55.91 E-value=15 Score=24.20 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=33.2
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeece
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTST 56 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~t 56 (101)
..++.|=+.|.....|..+++.|+.+|+ +.+.++++-.
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~ 51 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFS 51 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSC
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEe
Confidence 3578899999999999999999999998 8888887753
No 11
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=45.61 E-value=25 Score=26.54 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.1
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
.+|.|=|-|.....|..+|+.|+.+|+ +.+.++++-
T Consensus 203 ~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l 239 (324)
T 1umd_B 203 KDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTL 239 (324)
T ss_dssp SSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEE
T ss_pred CCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEecee
Confidence 678999999999999999999999998 778777764
No 12
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=41.01 E-value=25 Score=29.58 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=31.9
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
.+|.|=|-|.-...|+.+|+.|+.+|+ +.+.++.+
T Consensus 542 ~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~ 577 (651)
T 2e6k_A 542 PQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPS 577 (651)
T ss_dssp CSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCc
Confidence 689999999999999999999999999 77877766
No 13
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=39.49 E-value=32 Score=26.02 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=31.9
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
.+|.|=|-|.....|..+|+.|+.+|+ +.+.++++-
T Consensus 202 ~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l 238 (324)
T 1w85_B 202 KDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238 (324)
T ss_dssp SSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEE
T ss_pred CCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 678899999999999999999999998 778777764
No 14
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=39.23 E-value=40 Score=26.82 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=30.0
Q ss_pred HHHHHHH--HhccCCeEEEee-----cchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 8 AYLSLQR--YMQQHNEVELSA-----LGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 8 ~~~lak~--f~~g~~eV~IkA-----rG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
++.++++ |+...+-|.++| +|+-|..| .++-+||++|| ++..||.-
T Consensus 10 ~~~~gt~~~~~~~~KyIfVTGGVvS~lGKGi~aa-Slg~lLk~~G~~Vt~~K~DP 63 (295)
T 2vo1_A 10 GVDLGTENLYFQSMKYILVTGGVISGIGKGIIAS-SVGTILKSCGLHVTSIKIDP 63 (295)
T ss_dssp -----------CCCEEEEEEECSSSSSSHHHHHH-HHHHHHHHTTCCEEEEEEEC
T ss_pred cccccccccccccceEEEEcCCcccccccHHHHH-HHHHHHHHCCCcceeeeccc
Confidence 4555555 556667776655 99998755 68999999999 89888875
No 15
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=38.50 E-value=31 Score=29.17 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=31.5
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
.+|.|=|-|.-...|+.+|+.|+.+|+ +.+.+..|
T Consensus 555 ~dvtiva~G~~v~~al~Aa~~L~~~Gi~~~Vvd~~~ 590 (680)
T 1gpu_A 555 PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPD 590 (680)
T ss_dssp CSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred CCEEEEEEcHHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 689999999999999999999999998 77777665
No 16
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=38.33 E-value=32 Score=28.77 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=32.3
Q ss_pred eEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeece
Q 034214 21 EVELSALGMAIATVVTIAEILKNNGL-AVEKKITTST 56 (101)
Q Consensus 21 eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~t 56 (101)
+|.|=|-|.....|..+|+.|+.+|+ +.+.+++|-.
T Consensus 500 dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~ 536 (616)
T 3mos_A 500 QVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIK 536 (616)
T ss_dssp EEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEE
T ss_pred CEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccC
Confidence 59999999999999999999999999 8888887753
No 17
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=37.85 E-value=35 Score=29.37 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.6
Q ss_pred eEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 21 EVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 21 eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
+|.|=|-|.-...|+.+|+.|+..|+ +.+.+..|
T Consensus 586 dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~ 620 (700)
T 3rim_A 586 DVILIATGSEVQLAVAAQTLLADNDILARVVSMPC 620 (700)
T ss_dssp SEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred CEEEEEechHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 89999999999999999999999999 88888776
No 18
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=37.77 E-value=32 Score=29.09 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 19 ~~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
-.+|.|=|-|.-...|+.+|+.|+.+|+ +.+.+..|-
T Consensus 525 g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i 562 (632)
T 3l84_A 525 EAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCF 562 (632)
T ss_dssp TCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBH
T ss_pred CCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcC
Confidence 3679999999999999999999999999 888777763
No 19
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=37.63 E-value=31 Score=29.52 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.4
Q ss_pred eEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEee
Q 034214 21 EVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (101)
Q Consensus 21 eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T 54 (101)
+|.|=|-|.-...|+.+||.|+.+|+ +.+.+..|
T Consensus 578 dvtiia~G~~v~~Al~Aa~~L~~~GI~~~Vid~~~ 612 (690)
T 3m49_A 578 DVILLATGSEVSLAVEAQKALAVDGVDASVVSMPS 612 (690)
T ss_dssp SEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CEEEEEechHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 89999999999999999999999999 88887775
No 20
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=37.54 E-value=32 Score=29.06 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=32.3
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
.+|.|=|-|.-...|+.+|+.|+.+|+ +.+.++.|-
T Consensus 563 ~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vv~~~~~ 599 (675)
T 1itz_A 563 PDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSW 599 (675)
T ss_dssp CSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence 689999999999999999999999998 778777763
No 21
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=37.13 E-value=26 Score=29.49 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=32.7
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
.+|.|=|-|.-...|+.+|+.|+.+|+ +.+.++.|-
T Consensus 550 ~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~ 586 (669)
T 2r8o_A 550 PELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPST 586 (669)
T ss_dssp CSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEEeccC
Confidence 689999999999999999999999999 888887764
No 22
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=33.49 E-value=19 Score=30.62 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=26.6
Q ss_pred EEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 23 ~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
++|++|+-|.. -.+.-+||++|| ++..||.-.
T Consensus 12 v~s~lgkgi~~-as~g~ll~~~g~~v~~~k~dpy 44 (535)
T 3nva_A 12 VLSSVGKGTLV-ASIGMLLKRRGYNVTAVKIDPY 44 (535)
T ss_dssp CSTTTTHHHHH-HHHHHHHHHTTCCEEEEEEECS
T ss_pred cccCcchHHHH-HHHHHHHHHCCceEEEEecCcc
Confidence 46889998864 478999999999 999998753
No 23
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=33.33 E-value=39 Score=29.07 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.5
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
++|.|=|-|.-...|+.+|+.|+.+|+ +.+.+..|-
T Consensus 598 ~dvtiia~G~~v~~al~Aa~~L~~~GI~~~Vid~~si 634 (711)
T 3uk1_A 598 RKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSS 634 (711)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred CCEEEEEecHHHHHHHHHHHHHHHcCCCeEEEecCcC
Confidence 689999999999999999999999999 788887763
No 24
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=31.42 E-value=20 Score=28.61 Aligned_cols=40 Identities=30% Similarity=0.457 Sum_probs=29.2
Q ss_pred HhccCCeEEE-----eecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 15 YMQQHNEVEL-----SALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 15 f~~g~~eV~I-----kArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
|.+..+-|.+ |++|+-|.. -.++-+||++|| ++..||.-.
T Consensus 19 ~~~~mKyIfVTGGVvSglGKGi~a-aSlG~LLk~rG~~Vt~~KiDPY 64 (294)
T 2c5m_A 19 YFQSMKYILVTGGVISGIGKGIIA-SSVGTILKSCGLHVTSIKIDPY 64 (294)
T ss_dssp --CCCEEEEEEECSSTTSCHHHHH-HHHHHHHHTTTCCEECCEEECB
T ss_pred eeeceEEEEEcCccccccchHHHH-HHHHHHHHHCCCeeEEEecCCc
Confidence 4555555554 789998864 478999999999 888888753
No 25
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=30.85 E-value=56 Score=25.10 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=31.6
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
.+|.|=|-|.....|..+++.|+.+|+ +.+.++++-
T Consensus 217 ~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~~~l 253 (341)
T 2ozl_B 217 THITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 253 (341)
T ss_dssp SSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECCEE
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEeeeee
Confidence 578889999999999999999999998 777777664
No 26
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=29.88 E-value=34 Score=29.05 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=32.2
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcCCe-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~~l-a~ikkI~T~ 55 (101)
.+|.|=|-|.-...|+.+|+.|+.+|+ +.+.+..|-
T Consensus 550 ~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~si 586 (663)
T 3kom_A 550 AKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCV 586 (663)
T ss_dssp CSCEEEECTTHHHHHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCEEEEEecHHHHHHHHHHHHHHhcCCCeEEEEcCcC
Confidence 679999999999999999999999999 788777763
No 27
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=29.55 E-value=46 Score=25.46 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=31.7
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcC-Ce-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNN-GL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~-~l-a~ikkI~T~ 55 (101)
.+|.|=|-|.....|..+|+.|+.+ |+ +.+.++++-
T Consensus 220 ~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~~l 257 (342)
T 2bfd_B 220 SDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTI 257 (342)
T ss_dssp SSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEE
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEeeeec
Confidence 6788999999999999999999998 98 777777764
No 28
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=25.57 E-value=29 Score=25.69 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILK 42 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlk 42 (101)
|+++|..++.-+.. ....-|+|+|-|++.+.-.|+.++..
T Consensus 35 ~~~~L~~al~~~~~--d~vr~vVltg~g~~F~aG~Dl~~~~~ 74 (267)
T 3hp0_A 35 LIEECLQVLNQCET--STVTVVVLEGLPEVFCFGADFQEIYQ 74 (267)
T ss_dssp HHHHHHHHHHHHHH--SSCCEEEEECCSSCSBCCBCHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCEEEEEECCCCceecCcCHHHHHh
Confidence 46788888877765 35889999999999999999988765
No 29
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=22.83 E-value=25 Score=25.69 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEIL 41 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIl 41 (101)
|+++|..++.-+.. ....-|+|+|.|++.|.-.|+.++.
T Consensus 35 ~~~~L~~al~~~~~--~~vr~vVltg~g~~F~aG~Dl~~~~ 73 (254)
T 3isa_A 35 LVEALIDGVDAAHR--EQVPLLVFAGAGRNFSAGFDFTDYE 73 (254)
T ss_dssp HHHHHHHHHHHHHH--TTCSEEEEEESTTCSCCCBCCTTCT
T ss_pred HHHHHHHHHHHhhc--CCcEEEEEECCCCceeeCcChHHhh
Confidence 46788888877654 4788999999999988888876653
No 30
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.28 E-value=1.2e+02 Score=21.40 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhhcCCeeEEEEEeeceee
Q 034214 4 DLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVD 58 (101)
Q Consensus 4 ~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlkn~~la~ikkI~T~t~~ 58 (101)
+|..|+.+|+++ +..-+|+|+.=| +|.+||++.=+.+..|..+..+
T Consensus 37 ~l~~~v~~a~~~-~~~~dVIISRGg--------ta~~lr~~~~iPVV~I~~s~~D 82 (196)
T 2q5c_A 37 SLTRASKIAFGL-QDEVDAIISRGA--------TSDYIKKSVSIPSISIKVTRFD 82 (196)
T ss_dssp CHHHHHHHHHHH-TTTCSEEEEEHH--------HHHHHHTTCSSCEEEECCCHHH
T ss_pred CHHHHHHHHHHh-cCCCeEEEECCh--------HHHHHHHhCCCCEEEEcCCHhH
Confidence 467788888888 655568777655 4677887754667777766543
No 31
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=21.19 E-value=81 Score=27.94 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=32.3
Q ss_pred CeEEEeecchhHHHHHHHHhhhhcC-Ce-eEEEEEeec
Q 034214 20 NEVELSALGMAIATVVTIAEILKNN-GL-AVEKKITTS 55 (101)
Q Consensus 20 ~eV~IkArG~AIs~AVdvAEIlkn~-~l-a~ikkI~T~ 55 (101)
..|.|=|-|.-...|+.+|++|+.+ |+ +.+.++.+-
T Consensus 724 ~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl 761 (886)
T 2qtc_A 724 GKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSF 761 (886)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCH
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcC
Confidence 6899999999999999999999998 98 777777763
No 32
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=20.87 E-value=49 Score=23.00 Aligned_cols=39 Identities=5% Similarity=0.129 Sum_probs=31.0
Q ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecchhHHHHHHHHhhhh
Q 034214 1 MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILK 42 (101)
Q Consensus 1 ~~~~~~~~~~lak~f~~g~~eV~IkArG~AIs~AVdvAEIlk 42 (101)
+||-+...+..|+..++..+ +...|.+|++|.++..=|+
T Consensus 29 Lydgal~~l~~A~~aie~~d---~~~k~~~i~KA~~Ii~eL~ 67 (145)
T 1vh6_A 29 LYNGCLKFIRLAAQAIENDD---MERKNENLIKAQNIIQELN 67 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHH
Confidence 37888889999999887654 5678999999999875554
Done!