BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034218
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
 pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
          Length = 977

 Score = 30.0 bits (66), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 6   PDTADREKGRYTLIRDPENFQF----GIYDKPLP 35
           P  AD+EKG+   I  PE + +    G  D PLP
Sbjct: 776 PPQADKEKGKRAFIMKPEGYAYLYGPGREDGPLP 809


>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
          Length = 154

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 13  KGRYTLIRDPENFQFGIYDKPL 34
           + R TL++DPE  QF   D PL
Sbjct: 126 RARATLVKDPEGEQFPWKDAPL 147


>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
          Length = 153

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 13  KGRYTLIRDPENFQFGIYDKPL 34
           + R TL++DPE  QF   D PL
Sbjct: 125 RARATLVKDPEGEQFPWKDAPL 146


>pdb|1UWI|A Chain A, Crystal Structure Of Mutated Beta-Glycosidase From
          Sulfolobus Solfataricus, Working At Moderate
          Temperature
 pdb|1UWI|B Chain B, Crystal Structure Of Mutated Beta-Glycosidase From
          Sulfolobus Solfataricus, Working At Moderate
          Temperature
 pdb|1UWI|C Chain C, Crystal Structure Of Mutated Beta-Glycosidase From
          Sulfolobus Solfataricus, Working At Moderate
          Temperature
 pdb|1UWI|D Chain D, Crystal Structure Of Mutated Beta-Glycosidase From
          Sulfolobus Solfataricus, Working At Moderate
          Temperature
          Length = 489

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 16/65 (24%)

Query: 6  PDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFG 65
          P + D     Y  + DPEN   G+    LP  G G                Y+G +  F 
Sbjct: 24 PGSEDLNTDWYKWVHDPENMAAGLVSGDLPENGPG----------------YWGNYKTFH 67

Query: 66 NHCRK 70
          N+ +K
Sbjct: 68 NNAQK 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.152    0.533 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,942,399
Number of Sequences: 62578
Number of extensions: 110434
Number of successful extensions: 223
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 4
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 45 (21.9 bits)