BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034218
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA
           PE=2 SV=2
          Length = 158

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 31  DKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACS 89
           +  LPC G G+GWF F++GF+F  + WY G F+        D RE+AG  A +IA    S
Sbjct: 87  EHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSV--DHREKAGYVACSIA----S 140

Query: 90  VVMLVIVVFRL 100
           VV L+ V+  +
Sbjct: 141 VVYLIAVMLGM 151


>sp|Q54B29|Y3934_DICDI Uncharacterized membrane protein DDB_G0293934 OS=Dictyostelium
            discoideum GN=DDB_G0293934 PE=4 SV=1
          Length = 1713

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 38   GCGVGWFSFLLGFVFPLMWYYGTFLYF 64
            G G  W  F+ GF  P+ W  G+F  F
Sbjct: 1410 GFGPAWTMFVFGFFIPICWIIGSFYLF 1436


>sp|Q3U3I9|ZN865_MOUSE Zinc finger protein 865 OS=Mus musculus GN=Znf865 PE=2 SV=1
          Length = 1058

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 61 FLYFGNHCRKDPRERAGLAASAIAAMACS 89
          FL F NH R +P E  G  A A+AA+ C+
Sbjct: 33 FLEFLNHQRFEPMELYGEHAKAVAALPCT 61


>sp|P0CJ78|ZN865_HUMAN Zinc finger protein 865 OS=Homo sapiens GN=ZNF865 PE=3 SV=1
          Length = 1059

 Score = 29.3 bits (64), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 61 FLYFGNHCRKDPRERAGLAASAIAAMACS 89
          FL F NH R +P E  G  A A+AA+ C+
Sbjct: 33 FLEFLNHQRFEPMELYGEHAKAVAALPCA 61


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.333    0.147    0.499 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,920,094
Number of Sequences: 539616
Number of extensions: 1513246
Number of successful extensions: 3061
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3057
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)