Query 034218
Match_columns 101
No_of_seqs 57 out of 59
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 11:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10251 PEN-2: Presenilin enh 93.3 0.37 7.9E-06 34.0 6.0 49 45-94 13-68 (94)
2 PF07787 DUF1625: Protein of u 81.3 7.7 0.00017 29.6 6.6 55 40-101 188-244 (248)
3 KOG3402 Predicted membrane pro 79.2 3.2 7E-05 30.1 3.7 45 46-92 19-71 (101)
4 PF01034 Syndecan: Syndecan do 75.0 0.94 2E-05 30.3 0.0 25 76-100 12-36 (64)
5 PF12158 DUF3592: Protein of u 73.5 13 0.00028 24.7 5.2 43 15-62 97-145 (148)
6 PF05915 DUF872: Eukaryotic pr 72.4 2.1 4.5E-05 30.6 1.2 45 36-86 41-85 (115)
7 KOG2621 Prohibitins and stomat 66.4 8.7 0.00019 32.0 3.8 26 28-57 22-50 (288)
8 PLN03160 uncharacterized prote 60.2 4.4 9.5E-05 31.0 1.0 26 31-56 34-59 (219)
9 PF05393 Hum_adeno_E3A: Human 53.0 23 0.00049 25.5 3.6 41 21-68 17-58 (94)
10 PF14017 DUF4233: Protein of u 47.2 15 0.00033 25.9 1.9 31 43-77 77-107 (107)
11 PF06687 SUR7: SUR7/PalI famil 45.5 1.1E+02 0.0024 21.8 7.3 54 39-96 114-168 (212)
12 PF03845 Spore_permease: Spore 44.1 1.1E+02 0.0023 23.5 6.2 55 42-96 173-230 (320)
13 PF07213 DAP10: DAP10 membrane 42.7 37 0.0008 23.6 3.2 42 35-76 24-68 (79)
14 COG2738 Predicted Zn-dependent 41.3 36 0.00079 27.7 3.5 25 33-57 121-148 (226)
15 PF11118 DUF2627: Protein of u 41.1 29 0.00062 24.1 2.5 23 42-64 39-63 (77)
16 PF07954 DUF1689: Protein of u 39.6 29 0.00062 26.2 2.5 36 40-78 35-71 (152)
17 PF07062 Clc-like: Clc-like; 39.0 1.9E+02 0.0041 22.7 7.8 69 22-98 85-155 (211)
18 PF09878 DUF2105: Predicted me 37.7 46 0.00099 26.9 3.5 26 39-64 164-193 (212)
19 PF03733 DUF307: Domain of unk 35.8 68 0.0015 20.0 3.4 25 41-66 5-29 (53)
20 TIGR01191 ccmC heme exporter p 34.9 1.5E+02 0.0032 22.6 5.7 32 69-100 104-135 (184)
21 PF04906 Tweety: Tweety; Inte 33.9 62 0.0014 27.0 3.8 32 61-92 42-77 (406)
22 PF01036 Bac_rhodopsin: Bacter 33.4 1.4E+02 0.0029 22.3 5.2 45 43-90 1-46 (222)
23 PRK09554 feoB ferrous iron tra 32.4 1.3E+02 0.0027 27.5 5.7 53 40-96 689-741 (772)
24 PF05478 Prominin: Prominin; 32.3 2.1E+02 0.0046 25.8 7.1 20 46-65 97-117 (806)
25 COG5336 Uncharacterized protei 32.1 31 0.00066 25.6 1.6 9 37-45 58-66 (116)
26 PRK11383 hypothetical protein; 31.3 1.8E+02 0.0039 22.3 5.6 25 31-56 6-32 (145)
27 PF09323 DUF1980: Domain of un 30.9 1.7E+02 0.0038 21.3 5.4 44 42-90 2-47 (182)
28 PF04835 Pox_A9: A9 protein co 30.9 98 0.0021 20.3 3.6 35 61-100 9-43 (54)
29 TIGR02901 QoxD cytochrome aa3 30.0 1.1E+02 0.0024 21.2 4.0 33 68-100 57-89 (94)
30 COG3671 Predicted membrane pro 29.8 1.4E+02 0.003 22.4 4.8 37 28-71 17-53 (125)
31 COG1347 NqrD Na+-transporting 29.7 34 0.00073 27.5 1.6 24 29-52 123-152 (208)
32 KOG0581 Mitogen-activated prot 29.5 25 0.00054 30.1 0.9 36 42-79 286-330 (364)
33 KOG4788 Members of chemokine-l 29.2 2.1E+02 0.0046 21.0 5.6 57 39-97 64-126 (172)
34 cd02435 CCC1 CCC1. CCC1: This 27.8 2.2E+02 0.0048 22.3 5.8 16 42-57 160-176 (241)
35 PRK10582 cytochrome o ubiquino 27.7 2.3E+02 0.005 20.2 6.8 34 68-101 66-99 (109)
36 PRK14409 membrane protein; Pro 27.3 97 0.0021 24.1 3.7 31 43-76 3-34 (205)
37 PF01102 Glycophorin_A: Glycop 27.3 1.1E+02 0.0023 22.3 3.7 6 48-53 71-76 (122)
38 PF08999 SP_C-Propep: Surfacta 27.3 1.3E+02 0.0029 21.5 4.1 34 32-66 24-58 (93)
39 PRK14403 membrane protein; Pro 26.7 1E+02 0.0022 23.8 3.7 30 43-75 4-34 (196)
40 PF14242 DUF4342: Domain of un 26.1 1E+02 0.0023 20.9 3.3 24 76-99 50-73 (84)
41 cd02432 Nodulin-21_like_1 Nodu 24.9 3E+02 0.0065 21.2 6.0 17 41-57 142-159 (218)
42 PRK00968 tetrahydromethanopter 24.6 94 0.002 25.6 3.3 26 70-95 208-236 (240)
43 cd02433 Nodulin-21_like_2 Nodu 23.7 2.9E+02 0.0062 21.6 5.7 15 42-56 157-172 (234)
44 PF04298 Zn_peptidase_2: Putat 23.7 1.2E+02 0.0025 24.3 3.6 16 37-52 122-137 (222)
45 PF11377 DUF3180: Protein of u 23.6 2.4E+02 0.0053 20.3 5.0 13 54-66 87-99 (138)
46 PF02285 COX8: Cytochrome oxid 23.2 1.8E+02 0.0039 18.1 3.7 27 69-95 3-29 (44)
47 COG2364 Predicted membrane pro 22.9 1.3E+02 0.0029 24.1 3.8 36 37-85 48-84 (210)
48 PF15110 TMEM141: TMEM141 prot 22.8 1.6E+02 0.0035 21.1 3.8 43 42-90 31-73 (94)
49 COG4060 MtrD Tetrahydromethano 22.7 1.2E+02 0.0026 24.6 3.6 27 70-96 198-227 (230)
50 PF07331 TctB: Tripartite tric 22.6 2.4E+02 0.0053 18.8 4.7 12 54-65 92-103 (141)
51 PF02687 FtsX: FtsX-like perme 22.4 1.4E+02 0.0031 18.2 3.2 9 69-77 88-96 (121)
52 PRK14400 membrane protein; Pro 22.2 1.6E+02 0.0035 22.8 4.0 31 42-75 7-38 (201)
53 PF10762 DUF2583: Protein of u 22.2 64 0.0014 23.0 1.7 14 47-60 47-61 (89)
54 PRK10692 hypothetical protein; 22.0 65 0.0014 23.1 1.7 15 47-61 47-62 (92)
55 PRK13387 1,4-dihydroxy-2-napht 21.9 1.8E+02 0.0039 23.3 4.4 17 4-20 210-227 (317)
56 COG4291 Predicted membrane pro 21.8 2.4E+02 0.0051 23.2 5.0 44 23-66 11-57 (228)
57 PRK09597 lipid A 1-phosphatase 21.7 41 0.0009 26.2 0.7 17 38-54 22-38 (190)
58 COG4744 Uncharacterized conser 21.5 97 0.0021 23.2 2.6 24 76-99 23-46 (121)
59 TIGR02847 CyoD cytochrome o ub 21.5 2.9E+02 0.0063 19.2 6.8 33 68-100 55-87 (96)
60 PF06770 Arif-1: Actin-rearran 21.3 4.2E+02 0.0091 21.0 7.4 43 12-64 21-63 (196)
61 KOG1172 Na+-independent Cl/HCO 21.2 32 0.0007 32.6 0.1 26 37-62 664-695 (876)
62 COG2194 Predicted membrane-ass 20.9 5.1E+02 0.011 23.0 7.3 32 40-71 11-42 (555)
No 1
>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex. It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].
Probab=93.31 E-value=0.37 Score=33.99 Aligned_cols=49 Identities=31% Similarity=0.604 Sum_probs=36.8
Q ss_pred HHHHHHHH-hHHHHHHHHHHhcccccCC------cccchhHHHHHHHHHHHHHHHHH
Q 034218 45 SFLLGFVF-PLMWYYGTFLYFGNHCRKD------PRERAGLAASAIAAMACSVVMLV 94 (101)
Q Consensus 45 lFllGFf~-~ipWY~gafl~~c~~~r~D------~REkpGl~AcaIAa~v~tia~ii 94 (101)
.|+.||++ |..|.+-++-++= ...++ ++-|.=.+.|+|.+++.+++++.
T Consensus 13 yf~~GFa~LP~lW~vN~~wF~~-~af~~p~~~~~~~Ir~YVi~SaiG~~vw~v~l~~ 68 (94)
T PF10251_consen 13 YFLGGFAFLPFLWLVNVVWFFR-EAFSKPPYDEQPQIRKYVIRSAIGFLVWTVVLIS 68 (94)
T ss_pred HHHHHHHHhHHHHHHHHHHHhH-HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899988 7999999876643 22233 36677788999999999887765
No 2
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=81.27 E-value=7.7 Score=29.62 Aligned_cols=55 Identities=13% Similarity=0.328 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHh--HHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 034218 40 GVGWFSFLLGFVFP--LMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM 101 (101)
Q Consensus 40 GiGWflFllGFf~~--ipWY~gafl~~c~~~r~D~REkpGl~AcaIAa~v~tia~ii~~~~~~~ 101 (101)
.+||++..+||.+- +.+.+..++++- + .-.+..-+.++.++...+.++++++.|+
T Consensus 188 ~~G~llmf~G~~~~~~~l~~l~~~~P~l---g----~l~~~~~~~~~~~~s~~lsl~~Ia~aW~ 244 (248)
T PF07787_consen 188 FIGWLLMFIGFFLLFSPLYTLVDWIPLL---G----NLVGFGLFLVAFIISFSLSLLTIALAWL 244 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcee---e----chhhhHHHHHHHHHHHHHHHHHHHHhhe
Confidence 56999999998884 444444455443 2 1344444455544444444555555553
No 3
>KOG3402 consensus Predicted membrane protein [Function unknown]
Probab=79.22 E-value=3.2 Score=30.11 Aligned_cols=45 Identities=31% Similarity=0.736 Sum_probs=30.5
Q ss_pred HHHHHHH-hHHHHHHHHHHh----cccccCCc--cc-chhHHHHHHHHHHHHHHH
Q 034218 46 FLLGFVF-PLMWYYGTFLYF----GNHCRKDP--RE-RAGLAASAIAAMACSVVM 92 (101)
Q Consensus 46 FllGFf~-~ipWY~gafl~~----c~~~r~D~--RE-kpGl~AcaIAa~v~tia~ 92 (101)
++.||-+ |..|.+-.|-++ |+ +..| |. |.=.++|+|..+..+|++
T Consensus 19 yl~GfafLP~lW~VN~FwFf~~af~~--pa~~~r~QIr~YVvrSavGf~fw~ivL 71 (101)
T KOG3402|consen 19 YLFGFAFLPWLWFVNCFWFFPVAFHS--PAFPHRRQIRNYVVRSAVGFSFWTIVL 71 (101)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHHHcC--cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889876 799999999775 43 2233 22 223467888888777754
No 4
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=75.00 E-value=0.94 Score=30.33 Aligned_cols=25 Identities=12% Similarity=0.582 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHc
Q 034218 76 AGLAASAIAAMACSVVMLVIVVFRL 100 (101)
Q Consensus 76 pGl~AcaIAa~v~tia~ii~~~~~~ 100 (101)
.|++|+.+++++++|++++.+.+|.
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888777764
No 5
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=73.50 E-value=13 Score=24.67 Aligned_cols=43 Identities=23% Similarity=0.554 Sum_probs=27.0
Q ss_pred ceeeecCCcccccCccC---CCCccccchhHHHHHHHHHH--Hh-HHHHHHHHH
Q 034218 15 RYTLIRDPENFQFGIYD---KPLPCFGCGVGWFSFLLGFV--FP-LMWYYGTFL 62 (101)
Q Consensus 15 ~y~~~rd~e~~~~~~~~---~rLPCcG~GiGWflFllGFf--~~-ipWY~gafl 62 (101)
+-+..+||+||+...-+ ++. +.-|..++++++ ++ +...+|.|+
T Consensus 97 ~V~V~Y~P~~P~~~~l~~~~~~~-----~~~~~~~~~~~~~~lG~~~~~~gl~~ 145 (148)
T PF12158_consen 97 TVTVYYNPNNPEEARLEPRKRPW-----SGLWLMFIFGFGFILGLIFFLVGLFM 145 (148)
T ss_pred EEEEEECCcCCCeEEEeeecCch-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999866555 333 357888887777 33 334444443
No 6
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=72.42 E-value=2.1 Score=30.60 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=24.5
Q ss_pred cccchhHHHHHHHHHHHhHHHHHHHHHHhcccccCCcccchhHHHHHHHHH
Q 034218 36 CFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAM 86 (101)
Q Consensus 36 CcG~GiGWflFllGFf~~ipWY~gafl~~c~~~r~D~REkpGl~AcaIAa~ 86 (101)
-=-+-++-+||++|.++-+ .|.+++.- +.|-....+++--.++.+
T Consensus 41 wK~I~la~~Lli~G~~li~---~g~l~~~~---~i~~~~~~~~~llilG~L 85 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLII---IGLLLFFG---HIDGDRDRGWALLILGIL 85 (115)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhc---ccCCCCcccchHHHHHHH
Confidence 5556677788888877653 34444443 334334455544444444
No 7
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=66.39 E-value=8.7 Score=32.03 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=21.4
Q ss_pred CccCCCCccccchhHHHHHHHHHHHh---HHHH
Q 034218 28 GIYDKPLPCFGCGVGWFSFLLGFVFP---LMWY 57 (101)
Q Consensus 28 ~~~~~rLPCcG~GiGWflFllGFf~~---ipWY 57 (101)
+..++++.|| +|++|+++|++- +||-
T Consensus 22 ~~~~~~~~~~----~~~l~~~S~llvi~TfP~S 50 (288)
T KOG2621|consen 22 EDDSKPLGAC----EWLLVILSFLLVLMTFPIS 50 (288)
T ss_pred ccccCCcchH----HHHHHHHHHHHHHHHhHHH
Confidence 5567899999 999999999985 5664
No 8
>PLN03160 uncharacterized protein; Provisional
Probab=60.22 E-value=4.4 Score=31.02 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=15.7
Q ss_pred CCCCccccchhHHHHHHHHHHHhHHH
Q 034218 31 DKPLPCFGCGVGWFSFLLGFVFPLMW 56 (101)
Q Consensus 31 ~~rLPCcG~GiGWflFllGFf~~ipW 56 (101)
.++.-||||-+..+++|.+.+..+.|
T Consensus 34 ~~~~~c~~~~~a~~l~l~~v~~~l~~ 59 (219)
T PLN03160 34 RNCIKCCGCITATLLILATTILVLVF 59 (219)
T ss_pred ccceEEHHHHHHHHHHHHHHHHheee
Confidence 33556887777777777554444433
No 9
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=53.02 E-value=23 Score=25.50 Aligned_cols=41 Identities=12% Similarity=0.320 Sum_probs=25.3
Q ss_pred CCcccccCccCCCCccccchhHHHHHHHHHHHh-HHHHHHHHHHhcccc
Q 034218 21 DPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFP-LMWYYGTFLYFGNHC 68 (101)
Q Consensus 21 d~e~~~~~~~~~rLPCcG~GiGWflFllGFf~~-ipWY~gafl~~c~~~ 68 (101)
..|-++.-++..+.| |+||.|++-.+=|++. ++|++ ||+-.
T Consensus 17 t~~~p~~~~~~n~~~--~Lgm~~lvI~~iFil~Vilwfv-----CC~kR 58 (94)
T PF05393_consen 17 TTETPVVSMFVNNWP--NLGMWFLVICGIFILLVILWFV-----CCKKR 58 (94)
T ss_pred ecccceeEeecCCCC--ccchhHHHHHHHHHHHHHHHHH-----HHHHh
Confidence 345555455677777 8998555544445555 88865 67633
No 10
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=47.23 E-value=15 Score=25.94 Aligned_cols=31 Identities=32% Similarity=0.760 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccccCCcccchh
Q 034218 43 WFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAG 77 (101)
Q Consensus 43 WflFllGFf~~ipWY~gafl~~c~~~r~D~REkpG 77 (101)
|..|.+|..|...|.++.. +. .|.|-|.+.|
T Consensus 77 p~m~vvG~iF~~~W~~~l~--lg--~~i~~~~~~g 107 (107)
T PF14017_consen 77 PAMFVVGVIFAAVWWYALY--LG--RRIDRRMARG 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH--HH--HHHHHHHhCc
Confidence 4456677777767766543 32 3556555443
No 11
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=45.46 E-value=1.1e+02 Score=21.78 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHh-HHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 034218 39 CGVGWFSFLLGFVFP-LMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIV 96 (101)
Q Consensus 39 ~GiGWflFllGFf~~-ipWY~gafl~~c~~~r~D~REkpGl~AcaIAa~v~tia~ii~~ 96 (101)
......++++|+.+. +......++-++. .+|++......++.+++..+..++..
T Consensus 114 ~~~~~~l~~ia~~~t~l~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~a~~~~lva~ 168 (212)
T PF06687_consen 114 LKAMFILYPIAIVFTFLALILSGLLAFFS----RPRNTILSLVASILSLLAFIFLLVAA 168 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778889998875 6666645544443 35556766666665555555444433
No 12
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=44.13 E-value=1.1e+02 Score=23.47 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh-cccccCCccc--chhHHHHHHHHHHHHHHHHHHH
Q 034218 42 GWFSFLLGFVFPLMWYYGTFLYF-GNHCRKDPRE--RAGLAASAIAAMACSVVMLVIV 96 (101)
Q Consensus 42 GWflFllGFf~~ipWY~gafl~~-c~~~r~D~RE--kpGl~AcaIAa~v~tia~ii~~ 96 (101)
||--.+-|......+|.+..+++ ...+-+|+++ |..+.|..+.++..+...++.+
T Consensus 173 g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i 230 (320)
T PF03845_consen 173 GIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIFITI 230 (320)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777666677777663332 2223345544 6666666666666555444433
No 13
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=42.74 E-value=37 Score=23.56 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=24.3
Q ss_pred ccccchhHHHHHHHHHHHh---HHHHHHHHHHhcccccCCcccch
Q 034218 35 PCFGCGVGWFSFLLGFVFP---LMWYYGTFLYFGNHCRKDPRERA 76 (101)
Q Consensus 35 PCcG~GiGWflFllGFf~~---ipWY~gafl~~c~~~r~D~REkp 76 (101)
+|+|||=-=-=-+.|..++ +-=.+..-.|.|-+.|+-|+|+.
T Consensus 24 scs~C~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~~~ 68 (79)
T PF07213_consen 24 SCSGCYPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPTQED 68 (79)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccC
Confidence 6777753333345666664 45556666666765565555554
No 14
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=41.31 E-value=36 Score=27.69 Aligned_cols=25 Identities=32% Similarity=0.850 Sum_probs=19.6
Q ss_pred CCccccchhHHHHHHHHHHHh---HHHH
Q 034218 33 PLPCFGCGVGWFSFLLGFVFP---LMWY 57 (101)
Q Consensus 33 rLPCcG~GiGWflFllGFf~~---ipWY 57 (101)
|---+|-.+.|.+|++|+++. +.|.
T Consensus 121 Pv~~~gSn~a~~l~i~Gil~~~~~ll~l 148 (226)
T COG2738 121 PVANFGSNLAPLLFILGILLGSTGLLWL 148 (226)
T ss_pred ceeccccchhHHHHHHHHHHcchHHHHH
Confidence 444578889999999999994 5563
No 15
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=41.14 E-value=29 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHh--HHHHHHHHHHh
Q 034218 42 GWFSFLLGFVFP--LMWYYGTFLYF 64 (101)
Q Consensus 42 GWflFllGFf~~--ipWY~gafl~~ 64 (101)
-|.-|+.|+++- -.|++|-|++.
T Consensus 39 lwlqfl~G~~lf~~G~~Fi~GfI~~ 63 (77)
T PF11118_consen 39 LWLQFLAGLLLFAIGVGFIAGFILH 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhe
Confidence 499999999884 78999999985
No 16
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=39.58 E-value=29 Score=26.16 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhHHHHHH-HHHHhcccccCCcccchhH
Q 034218 40 GVGWFSFLLGFVFPLMWYYG-TFLYFGNHCRKDPRERAGL 78 (101)
Q Consensus 40 GiGWflFllGFf~~ipWY~g-afl~~c~~~r~D~REkpGl 78 (101)
-.||..|++||+.|..+|.- +=..-. -.-||.||-+
T Consensus 35 ~~g~~~~~~gF~~Pt~y~~yk~~~~~g---v~~~~~~pfl 71 (152)
T PF07954_consen 35 LGGYGGFMAGFFAPTAYYRYKTGAIKG---VPVPRQKPFL 71 (152)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccccC---CcCCccCcch
Confidence 35999999999999888763 111111 1467777754
No 17
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=38.99 E-value=1.9e+02 Score=22.68 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=40.6
Q ss_pred CcccccCccCCCCccccchhHHHHHHHHHHHh--HHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 034218 22 PENFQFGIYDKPLPCFGCGVGWFSFLLGFVFP--LMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVF 98 (101)
Q Consensus 22 ~e~~~~~~~~~rLPCcG~GiGWflFllGFf~~--ipWY~gafl~~c~~~r~D~REkpGl~AcaIAa~v~tia~ii~~~~ 98 (101)
.+|+.....|-+-||+ .||=-..+.++.- +.=..+.+.-.|.+. .++..++.++...+.++...++.++
T Consensus 85 ~~~~~~~~~~~~~h~F---~gWh~AvLil~~~s~lf~~lsi~~~iCa~c-----~~~~ai~~~v~~~ia~l~S~~g~~i 155 (211)
T PF07062_consen 85 NCDGNSNVGESETHCF---FGWHKAVLILISFSMLFALLSICFGICAPC-----HPSFAIFYTVLVFIAALLSLIGLGI 155 (211)
T ss_pred hcccCCccccccccee---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788889999 4885544444442 222334444456433 4455577777777666666665544
No 18
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=37.72 E-value=46 Score=26.90 Aligned_cols=26 Identities=27% Similarity=0.695 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHH----hHHHHHHHHHHh
Q 034218 39 CGVGWFSFLLGFVF----PLMWYYGTFLYF 64 (101)
Q Consensus 39 ~GiGWflFllGFf~----~ipWY~gafl~~ 64 (101)
-|+.|.+-++||+. |=-|.++.++-=
T Consensus 164 SGiaWalWi~gF~~Ff~~P~~Wl~~L~lAg 193 (212)
T PF09878_consen 164 SGIAWALWIAGFIGFFLFPQYWLLALMLAG 193 (212)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 48999999998864 556777766543
No 19
>PF03733 DUF307: Domain of unknown function (DUF307); InterPro: IPR005185 This proteins contain a domain which occurs as one or more copies in a small family of putative membrane proteins.
Probab=35.78 E-value=68 Score=20.01 Aligned_cols=25 Identities=24% Similarity=0.691 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhcc
Q 034218 41 VGWFSFLLGFVFPLMWYYGTFLYFGN 66 (101)
Q Consensus 41 iGWflFllGFf~~ipWY~gafl~~c~ 66 (101)
+-|++ ..|+.+++.|.+++.+.+..
T Consensus 5 ilW~i-~~G~~lal~~~~~~~~~~it 29 (53)
T PF03733_consen 5 ILWFI-FFGWWLALIWLLAGILCCIT 29 (53)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 35776 68999999999988877764
No 20
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=34.89 E-value=1.5e+02 Score=22.56 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=23.3
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHHHc
Q 034218 69 RKDPRERAGLAASAIAAMACSVVMLVIVVFRL 100 (101)
Q Consensus 69 r~D~REkpGl~AcaIAa~v~tia~ii~~~~~~ 100 (101)
..|.|||.|-.|+..+-+.+..+.++-.+++|
T Consensus 104 ~~~~~~~~~r~aAvl~i~gfi~vpi~~~~V~~ 135 (184)
T TIGR01191 104 AIDNRDSAAKAAGILCLVGVVNIPIIKFSVEW 135 (184)
T ss_pred hccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888887777766666777677765
No 21
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=33.91 E-value=62 Score=26.99 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=13.7
Q ss_pred HHHhcccccCCcccch---hH-HHHHHHHHHHHHHH
Q 034218 61 FLYFGNHCRKDPRERA---GL-AASAIAAMACSVVM 92 (101)
Q Consensus 61 fl~~c~~~r~D~REkp---Gl-~AcaIAa~v~tia~ 92 (101)
+-.+|.+.+.+++.+. -+ ..+.||++++..++
T Consensus 42 ~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~aai 77 (406)
T PF04906_consen 42 ICRCCCRRPREEKSSRRCCCLTWSLVIATLVCCAAI 77 (406)
T ss_pred HHHhhCCCCCccccccCCcchHHHHHHHHHHHHHHH
Confidence 4456753433434433 12 22345555544433
No 22
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=33.38 E-value=1.4e+02 Score=22.28 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhccccc-CCcccchhHHHHHHHHHHHHH
Q 034218 43 WFSFLLGFVFPLMWYYGTFLYFGNHCR-KDPRERAGLAASAIAAMACSV 90 (101)
Q Consensus 43 WflFllGFf~~ipWY~gafl~~c~~~r-~D~REkpGl~AcaIAa~v~ti 90 (101)
|..|-+++..-+ +++..++-...| +++++|..+..++.-..+.++
T Consensus 1 ~~~~~v~~~~~~---~~~l~f~~~~~~~~~~~~R~~~~~~~~i~~iaa~ 46 (222)
T PF01036_consen 1 WTWFWVFAAAML---VSTLFFLLWSRRVTSPRKRYFYYLSALITGIAAI 46 (222)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHH
Confidence 444444444431 344444443456 577778877665554444443
No 23
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=32.42 E-value=1.3e+02 Score=27.51 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 034218 40 GVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIV 96 (101)
Q Consensus 40 GiGWflFllGFf~~ipWY~gafl~~c~~~r~D~REkpGl~AcaIAa~v~tia~ii~~ 96 (101)
|..|.+|.+++-+.+.|-++++.|---.. . .+|+..+..|++++..++.++.+
T Consensus 689 ~~kw~~~~~~~~~~~Ay~~a~~~yq~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~ 741 (772)
T PRK09554 689 SRGWMGFSILWGLNIAYSLATLFYQVASF-S---QHPTYSLVCILAVILFNIVVLGL 741 (772)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hccchHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998888754311 1 35777777777766665555443
No 24
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=32.31 E-value=2.1e+02 Score=25.81 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHHHHHh-HHHHHHHHHHhc
Q 034218 46 FLLGFVFP-LMWYYGTFLYFG 65 (101)
Q Consensus 46 FllGFf~~-ipWY~gafl~~c 65 (101)
.++|.++. ++=.+|.+.-+|
T Consensus 97 ~~i~ll~~il~P~vg~~fCcC 117 (806)
T PF05478_consen 97 AVIGLLFIILMPLVGLCFCCC 117 (806)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 34566655 445667665555
No 25
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.14 E-value=31 Score=25.63 Aligned_cols=9 Identities=44% Similarity=1.390 Sum_probs=6.9
Q ss_pred ccchhHHHH
Q 034218 37 FGCGVGWFS 45 (101)
Q Consensus 37 cG~GiGWfl 45 (101)
-|.+|||++
T Consensus 58 VGa~iG~ll 66 (116)
T COG5336 58 VGAGIGWLL 66 (116)
T ss_pred HHHHHHHHH
Confidence 478888875
No 26
>PRK11383 hypothetical protein; Provisional
Probab=31.33 E-value=1.8e+02 Score=22.27 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=19.1
Q ss_pred CCCCccccchhHHHHHHHHHHHh--HHH
Q 034218 31 DKPLPCFGCGVGWFSFLLGFVFP--LMW 56 (101)
Q Consensus 31 ~~rLPCcG~GiGWflFllGFf~~--ipW 56 (101)
+||-|-+ .|+.|+.++.|.+.- -.|
T Consensus 6 ~~~t~af-~~~sw~al~~g~~~y~iGLw 32 (145)
T PRK11383 6 STYSPAF-SIVSWIALVGGIVTYLLGLW 32 (145)
T ss_pred CCCcHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 5666666 799999999998773 456
No 27
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=30.91 E-value=1.7e+02 Score=21.29 Aligned_cols=44 Identities=30% Similarity=0.396 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhHHHH--HHHHHHhcccccCCcccchhHHHHHHHHHHHHH
Q 034218 42 GWFSFLLGFVFPLMWY--YGTFLYFGNHCRKDPRERAGLAASAIAAMACSV 90 (101)
Q Consensus 42 GWflFllGFf~~ipWY--~gafl~~c~~~r~D~REkpGl~AcaIAa~v~ti 90 (101)
-|++-|+||.+-+.++ -|-+.++ +.||=.+=+..++|..++.++
T Consensus 2 ir~liL~~~~~l~~~l~~sG~i~~Y-----I~P~~~~~~~~a~i~l~ilai 47 (182)
T PF09323_consen 2 IRFLILLGFGILLFYLILSGKILLY-----IHPRYIPLLYFAAILLLILAI 47 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHH-----hCccHHHHHHHHHHHHHHHHH
Confidence 3667777776654444 4444443 367777666666655554444
No 28
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=30.90 E-value=98 Score=20.30 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=25.4
Q ss_pred HHHhcccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHc
Q 034218 61 FLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRL 100 (101)
Q Consensus 61 fl~~c~~~r~D~REkpGl~AcaIAa~v~tia~ii~~~~~~ 100 (101)
|.|+| |-|-||--.+-.|.-++.+..+-+.+-+.+
T Consensus 9 ~myfc-----e~k~R~NsF~fViik~vismimylilGi~L 43 (54)
T PF04835_consen 9 FMYFC-----ENKLRPNSFWFVIIKSVISMIMYLILGIAL 43 (54)
T ss_pred HHHHH-----HhhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677 778899988888888888877665554443
No 29
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=29.98 E-value=1.1e+02 Score=21.21 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=21.5
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHc
Q 034218 68 CRKDPRERAGLAASAIAAMACSVVMLVIVVFRL 100 (101)
Q Consensus 68 ~r~D~REkpGl~AcaIAa~v~tia~ii~~~~~~ 100 (101)
.|.|.++++++---++.-.++.++++++.++|.
T Consensus 57 LHm~~~~~~~~n~~~l~ft~~i~~i~v~GSlWI 89 (94)
T TIGR02901 57 MHAGESEDGKVQIYNIYYSAFIALVTVFGSLWV 89 (94)
T ss_pred eeecCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 477877777666555555555566666777664
No 30
>COG3671 Predicted membrane protein [Function unknown]
Probab=29.85 E-value=1.4e+02 Score=22.44 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.0
Q ss_pred CccCCCCccccchhHHHHHHHHHHHhHHHHHHHHHHhcccccCC
Q 034218 28 GIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKD 71 (101)
Q Consensus 28 ~~~~~rLPCcG~GiGWflFllGFf~~ipWY~gafl~~c~~~r~D 71 (101)
--.+|++|-- -..|+++|+.-++.=.+|+|.-. .++|
T Consensus 17 ~~~~k~l~~v----vY~Ly~~G~v~git~lvgvi~AY---v~rd 53 (125)
T COG3671 17 LESGKKLPIV----VYILYLLGAVTGITPLVGVIFAY---VNRD 53 (125)
T ss_pred ccccccchHH----HHHHHHHHHHHHHHHHHHHHHHh---cccc
Confidence 3367888865 88999999999988889988764 3556
No 31
>COG1347 NqrD Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]
Probab=29.75 E-value=34 Score=27.51 Aligned_cols=24 Identities=38% Similarity=0.938 Sum_probs=18.2
Q ss_pred ccCCCCccc------cchhHHHHHHHHHHH
Q 034218 29 IYDKPLPCF------GCGVGWFSFLLGFVF 52 (101)
Q Consensus 29 ~~~~rLPCc------G~GiGWflFllGFf~ 52 (101)
+...|+|-+ |+|.||.|..+||+=
T Consensus 123 m~~~Pi~sf~DGignGlGYg~~L~~v~~iR 152 (208)
T COG1347 123 MKSPPIESFLDGIGNGLGYGWMLLVVGFVR 152 (208)
T ss_pred ccCCCcHHHHhhccccccchHHHHHHHHHH
Confidence 444566654 899999999999863
No 32
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=29.47 E-value=25 Score=30.10 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=23.2
Q ss_pred HHHHHHHHHHH-h---HHHH-----HHHHHHhcccccCCcccchhHH
Q 034218 42 GWFSFLLGFVF-P---LMWY-----YGTFLYFGNHCRKDPRERAGLA 79 (101)
Q Consensus 42 GWflFllGFf~-~---ipWY-----~gafl~~c~~~r~D~REkpGl~ 79 (101)
+||..+--... | +|== .--|+=.|. |||||||+..-
T Consensus 286 ~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL--~Kdp~~R~s~~ 330 (364)
T KOG0581|consen 286 DIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCL--RKDPSERPSAK 330 (364)
T ss_pred CHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHh--cCCcccCCCHH
Confidence 56665555554 1 3322 446777886 99999999753
No 33
>KOG4788 consensus Members of chemokine-like factor super family and related proteins [Defense mechanisms]
Probab=29.22 E-value=2.1e+02 Score=21.05 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHHh--HHHHHHHHHHhccccc-CCcccch---hHHHHHHHHHHHHHHHHHHHH
Q 034218 39 CGVGWFSFLLGFVFP--LMWYYGTFLYFGNHCR-KDPRERA---GLAASAIAAMACSVVMLVIVV 97 (101)
Q Consensus 39 ~GiGWflFllGFf~~--ipWY~gafl~~c~~~r-~D~REkp---Gl~AcaIAa~v~tia~ii~~~ 97 (101)
.+.+|+.|...+.+- ++-++..+..+ +.+ .|+=-+| .+.=+.++++.+.++.+....
T Consensus 64 ~~~~~~~~vsv~~~i~tl~fl~~~~~~~--~~~~~~~i~wp~~~~l~~~~v~~~~~~i~~~~~~~ 126 (172)
T KOG4788|consen 64 LALAFFEFVSVFAFLLTLAFLILYLTLL--HETIVLPIRWPFLLDLLNLVVALLLFAIASWVLAQ 126 (172)
T ss_pred CcceeeeHHHHHHHHHHHHHHHHHHHHh--hhccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667787777666553 44444333332 223 3444455 788888888877776665443
No 34
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=27.77 E-value=2.2e+02 Score=22.28 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHh-HHHH
Q 034218 42 GWFSFLLGFVFP-LMWY 57 (101)
Q Consensus 42 GWflFllGFf~~-ipWY 57 (101)
--++|++|=++| +|+.
T Consensus 160 s~lsf~lG~liPLlPy~ 176 (241)
T cd02435 160 IGLSYFIGGLIPLLPYF 176 (241)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 345688888888 7753
No 35
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=27.68 E-value=2.3e+02 Score=20.18 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=22.4
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 034218 68 CRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM 101 (101)
Q Consensus 68 ~r~D~REkpGl~AcaIAa~v~tia~ii~~~~~~~ 101 (101)
.|.|.+|++++-.-++.-.+..++++++.++|.|
T Consensus 66 LHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM 99 (109)
T PRK10582 66 LHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIM 99 (109)
T ss_pred hcccCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778788887766555555555666667777653
No 36
>PRK14409 membrane protein; Provisional
Probab=27.33 E-value=97 Score=24.09 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHhcccccCCcccch
Q 034218 43 WFSFLLGFVFP-LMWYYGTFLYFGNHCRKDPRERA 76 (101)
Q Consensus 43 WflFllGFf~~-ipWY~gafl~~c~~~r~D~REkp 76 (101)
|++++++++++ +|+=+=.--.+ ..+|.||.-
T Consensus 3 ~~~~i~~YllGsip~~~~i~k~~---~g~DiR~~G 34 (205)
T PRK14409 3 LIFALFSFISGSIPFGYWIALRF---RGIDIRKHG 34 (205)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh---cCCCccccC
Confidence 67788899997 88744333222 367999863
No 37
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.32 E-value=1.1e+02 Score=22.28 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.2
Q ss_pred HHHHHh
Q 034218 48 LGFVFP 53 (101)
Q Consensus 48 lGFf~~ 53 (101)
+|-.++
T Consensus 71 ~gv~aG 76 (122)
T PF01102_consen 71 FGVMAG 76 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 38
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=27.26 E-value=1.3e+02 Score=21.55 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=17.7
Q ss_pred CCCccccchhHHHHHHHHHHHh-HHHHHHHHHHhcc
Q 034218 32 KPLPCFGCGVGWFSFLLGFVFP-LMWYYGTFLYFGN 66 (101)
Q Consensus 32 ~rLPCcG~GiGWflFllGFf~~-ipWY~gafl~~c~ 66 (101)
-++|||++++-=++.|.=-..- +.=.+|+. ++..
T Consensus 24 ~~iPc~p~~lKrlliivvVvVlvVvvivg~L-LMGL 58 (93)
T PF08999_consen 24 FGIPCCPVNLKRLLIIVVVVVLVVVVIVGAL-LMGL 58 (93)
T ss_dssp ---SSS-SHHHHHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred cCCCccccccceEEEEEEeeehhHHHHHHHH-HHHh
Confidence 3799999999887776655444 33344444 4443
No 39
>PRK14403 membrane protein; Provisional
Probab=26.74 E-value=1e+02 Score=23.82 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=19.6
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHhcccccCCcccc
Q 034218 43 WFSFLLGFVFP-LMWYYGTFLYFGNHCRKDPRER 75 (101)
Q Consensus 43 WflFllGFf~~-ipWY~gafl~~c~~~r~D~REk 75 (101)
+++.++|++++ +|+=+-.-=.+ .++|+||.
T Consensus 4 ~~~~i~~YLiGSIp~g~ii~k~~---~g~DiR~~ 34 (196)
T PRK14403 4 WLFPILGYFIGSIPFSYLIPKWL---KGIDVRKV 34 (196)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHh---cCCCcccc
Confidence 34558899998 99844332222 35799985
No 40
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=26.06 E-value=1e+02 Score=20.87 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 034218 76 AGLAASAIAAMACSVVMLVIVVFR 99 (101)
Q Consensus 76 pGl~AcaIAa~v~tia~ii~~~~~ 99 (101)
.|.++.+++++++-.++++++...
T Consensus 50 ~gv~~g~i~~~~aP~la~lg~iaA 73 (84)
T PF14242_consen 50 AGVAAGVIGALLAPVLAALGAIAA 73 (84)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777666666655433
No 41
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=24.86 E-value=3e+02 Score=21.18 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHh-HHHH
Q 034218 41 VGWFSFLLGFVFP-LMWY 57 (101)
Q Consensus 41 iGWflFllGFf~~-ipWY 57 (101)
.--++|++|=++| +|..
T Consensus 142 ~s~~sf~lg~liPllpy~ 159 (218)
T cd02432 142 ASAISFSVGALLPLLAIL 159 (218)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3567899999999 7743
No 42
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=24.64 E-value=94 Score=25.57 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=20.8
Q ss_pred CCcc---cchhHHHHHHHHHHHHHHHHHH
Q 034218 70 KDPR---ERAGLAASAIAAMACSVVMLVI 95 (101)
Q Consensus 70 ~D~R---EkpGl~AcaIAa~v~tia~ii~ 95 (101)
+||. -..|.+||.+|++++.+..++.
T Consensus 208 HDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 208 HDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5874 4479999999999998877664
No 43
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=23.72 E-value=2.9e+02 Score=21.58 Aligned_cols=15 Identities=33% Similarity=0.746 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHh-HHH
Q 034218 42 GWFSFLLGFVFP-LMW 56 (101)
Q Consensus 42 GWflFllGFf~~-ipW 56 (101)
.-++|++|=++| +|.
T Consensus 157 sflsF~ig~liPLLPf 172 (234)
T cd02433 157 SFLLFALGALIPVLPF 172 (234)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 446788999998 774
No 44
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=23.67 E-value=1.2e+02 Score=24.33 Aligned_cols=16 Identities=25% Similarity=0.893 Sum_probs=13.5
Q ss_pred ccchhHHHHHHHHHHH
Q 034218 37 FGCGVGWFSFLLGFVF 52 (101)
Q Consensus 37 cG~GiGWflFllGFf~ 52 (101)
.|--++|.+|++|+++
T Consensus 122 ~~s~~~~~l~~~G~~l 137 (222)
T PF04298_consen 122 IGSNLSWILLILGLFL 137 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455799999999999
No 45
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=23.56 E-value=2.4e+02 Score=20.29 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcc
Q 034218 54 LMWYYGTFLYFGN 66 (101)
Q Consensus 54 ipWY~gafl~~c~ 66 (101)
-=||.|..+++-.
T Consensus 87 ~G~~~G~~~~~l~ 99 (138)
T PF11377_consen 87 AGWYAGQLVYLLR 99 (138)
T ss_pred HHHHHHHHHHHHH
Confidence 3589999998874
No 46
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=23.24 E-value=1.8e+02 Score=18.06 Aligned_cols=27 Identities=37% Similarity=0.418 Sum_probs=16.6
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHH
Q 034218 69 RKDPRERAGLAASAIAAMACSVVMLVI 95 (101)
Q Consensus 69 r~D~REkpGl~AcaIAa~v~tia~ii~ 95 (101)
.+-|||+-|-+-.+|+-.++.+.+++-
T Consensus 3 SkP~~~~~s~~e~aigltv~f~~~L~P 29 (44)
T PF02285_consen 3 SKPPREPLSPAEQAIGLTVCFVTFLGP 29 (44)
T ss_dssp E---SS---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 356899999999999888877766653
No 47
>COG2364 Predicted membrane protein [Function unknown]
Probab=22.89 E-value=1.3e+02 Score=24.14 Aligned_cols=36 Identities=33% Similarity=0.550 Sum_probs=23.3
Q ss_pred ccchhHHHHHHHHHHHh-HHHHHHHHHHhcccccCCcccchhHHHHHHHH
Q 034218 37 FGCGVGWFSFLLGFVFP-LMWYYGTFLYFGNHCRKDPRERAGLAASAIAA 85 (101)
Q Consensus 37 cG~GiGWflFllGFf~~-ipWY~gafl~~c~~~r~D~REkpGl~AcaIAa 85 (101)
.|+-+||.++++|+++- .-|.. -||||++.+--.+-
T Consensus 48 ~gLtvG~wsi~l~~~li~~~~~~-------------lr~~~~Lg~lln~l 84 (210)
T COG2364 48 FGLTVGSWSIILGSCLIGCTWIL-------------LRKKPGLGTLLNAL 84 (210)
T ss_pred cCcceeeHHHHHHHHHHHHHHHH-------------HhcchhHHHHHHHH
Confidence 46778977777777653 33321 17999988765543
No 48
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=22.77 E-value=1.6e+02 Score=21.11 Aligned_cols=43 Identities=26% Similarity=0.225 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHH
Q 034218 42 GWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSV 90 (101)
Q Consensus 42 GWflFllGFf~~ipWY~gafl~~c~~~r~D~REkpGl~AcaIAa~v~ti 90 (101)
|-+.|++||--. .++-.-.+.|.-|+-++.++.+++++.+++=
T Consensus 31 G~~tFv~G~~~~------f~~Q~~iqrrlpYp~q~~~LVS~v~~sv~sY 73 (94)
T PF15110_consen 31 GLFTFVLGTGAT------FFLQKAIQRRLPYPFQWNILVSVVVASVASY 73 (94)
T ss_dssp HHHHHHGGGGHH------HHHHHHHHTTSSSSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHH------HHHHHHHHHhCCCCCCchhHHHHHHhhhhhh
Confidence 556677776432 1222333457789999999999998887664
No 49
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=22.69 E-value=1.2e+02 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=21.0
Q ss_pred CCcccc---hhHHHHHHHHHHHHHHHHHHH
Q 034218 70 KDPRER---AGLAASAIAAMACSVVMLVIV 96 (101)
Q Consensus 70 ~D~REk---pGl~AcaIAa~v~tia~ii~~ 96 (101)
+||.-| .+.+||.+|++++.+...+..
T Consensus 198 HDPKfkk~pk~vias~vasil~~iia~l~v 227 (230)
T COG4060 198 HDPKFKKLPKAVIASLVASILAGIIAVLLV 227 (230)
T ss_pred cChhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 588654 589999999999988766543
No 50
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=22.63 E-value=2.4e+02 Score=18.76 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhc
Q 034218 54 LMWYYGTFLYFG 65 (101)
Q Consensus 54 ipWY~gafl~~c 65 (101)
+..++++++++.
T Consensus 92 lGf~~at~~~~~ 103 (141)
T PF07331_consen 92 LGFIIATFLFLF 103 (141)
T ss_pred hhHHHHHHHHHH
Confidence 444445444443
No 51
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=22.38 E-value=1.4e+02 Score=18.25 Aligned_cols=9 Identities=11% Similarity=-0.163 Sum_probs=4.4
Q ss_pred cCCcccchh
Q 034218 69 RKDPRERAG 77 (101)
Q Consensus 69 r~D~REkpG 77 (101)
+.++..=..
T Consensus 88 ~~~~~~~~~ 96 (121)
T PF02687_consen 88 TISPWSFLI 96 (121)
T ss_pred eeCHHHHHH
Confidence 446655433
No 52
>PRK14400 membrane protein; Provisional
Probab=22.17 E-value=1.6e+02 Score=22.79 Aligned_cols=31 Identities=13% Similarity=-0.034 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHh-HHHHHHHHHHhcccccCCcccc
Q 034218 42 GWFSFLLGFVFP-LMWYYGTFLYFGNHCRKDPRER 75 (101)
Q Consensus 42 GWflFllGFf~~-ipWY~gafl~~c~~~r~D~REk 75 (101)
+-+++++|++++ +|+=+-.-=.+ ..+|.||.
T Consensus 7 ~~~~~i~~YllGsip~~~~i~k~~---~g~DiR~~ 38 (201)
T PRK14400 7 GAVLVAAGYLAGSIPFGVVLGRLV---LGVDVRTV 38 (201)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHh---CCCCcccc
Confidence 445678899997 88754333333 36899985
No 53
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=22.16 E-value=64 Score=23.04 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=11.0
Q ss_pred HHHHHHh-HHHHHHH
Q 034218 47 LLGFVFP-LMWYYGT 60 (101)
Q Consensus 47 llGFf~~-ipWY~ga 60 (101)
|+|.|.+ +.|.+||
T Consensus 47 l~~IFiGAllWL~GA 61 (89)
T PF10762_consen 47 LFSIFIGALLWLVGA 61 (89)
T ss_pred HHHHHHHHHHHHhcc
Confidence 6777775 8899887
No 54
>PRK10692 hypothetical protein; Provisional
Probab=21.95 E-value=65 Score=23.13 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=11.5
Q ss_pred HHHHHHh-HHHHHHHH
Q 034218 47 LLGFVFP-LMWYYGTF 61 (101)
Q Consensus 47 llGFf~~-ipWY~gaf 61 (101)
|+|.|.+ +.|.+||=
T Consensus 47 l~~IFiGAllWL~GAr 62 (92)
T PRK10692 47 LLSIFVGALLWLAGAR 62 (92)
T ss_pred HHHHHHHHHHHHhccc
Confidence 6777775 88998873
No 55
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=21.89 E-value=1.8e+02 Score=23.30 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=12.0
Q ss_pred cCCC-ccccCCCceeeec
Q 034218 4 KAPD-TADREKGRYTLIR 20 (101)
Q Consensus 4 ~~~d-~~~~~~g~y~~~r 20 (101)
+-+| ..|++.||+|+.-
T Consensus 210 n~~D~e~D~~~gk~TL~v 227 (317)
T PRK13387 210 NLRDLDEDIKNHRYTLVY 227 (317)
T ss_pred CCccchhHHHcCCeeeee
Confidence 4445 5678888999854
No 56
>COG4291 Predicted membrane protein [Function unknown]
Probab=21.76 E-value=2.4e+02 Score=23.16 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=26.3
Q ss_pred cccccCccCCCCccccchhHHHH-HHHHHHHh--HHHHHHHHHHhcc
Q 034218 23 ENFQFGIYDKPLPCFGCGVGWFS-FLLGFVFP--LMWYYGTFLYFGN 66 (101)
Q Consensus 23 e~~~~~~~~~rLPCcG~GiGWfl-FllGFf~~--ipWY~gafl~~c~ 66 (101)
+..++-...|+-|.-+.++||.+ |++++-++ .-=-+|+-++||.
T Consensus 11 ~a~~~~~~~rhrlf~~a~lg~vlall~~~~~~~~~a~~igan~ff~~ 57 (228)
T COG4291 11 TAMQRFAVRRHRLFAIAALGGVLALLLALALSRPLAILIGANLFFLA 57 (228)
T ss_pred cccchhhHHhhHHHHHHHHHHHHHHHHHHhcchhHHHHHhHHHHHHH
Confidence 33444455667788888888875 44555442 3345566656654
No 57
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=21.72 E-value=41 Score=26.17 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.8
Q ss_pred cchhHHHHHHHHHHHhH
Q 034218 38 GCGVGWFSFLLGFVFPL 54 (101)
Q Consensus 38 G~GiGWflFllGFf~~i 54 (101)
=+|+||.+-|+|.++|.
T Consensus 22 ~~~~~~~~~~~~~~~~~ 38 (190)
T PRK09597 22 LLALSLGLILLGIFAPF 38 (190)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 47999999999999874
No 58
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=97 Score=23.20 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 034218 76 AGLAASAIAAMACSVVMLVIVVFR 99 (101)
Q Consensus 76 pGl~AcaIAa~v~tia~ii~~~~~ 99 (101)
.|.+--.=|++||+++++|.++.-
T Consensus 23 tGvANLfDaamVfsva~LI~lv~S 46 (121)
T COG4744 23 TGVANLFDAAMVFSVALLIALVMS 46 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 355555568999999999987754
No 59
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=21.45 E-value=2.9e+02 Score=19.19 Aligned_cols=33 Identities=3% Similarity=-0.034 Sum_probs=23.3
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHc
Q 034218 68 CRKDPRERAGLAASAIAAMACSVVMLVIVVFRL 100 (101)
Q Consensus 68 ~r~D~REkpGl~AcaIAa~v~tia~ii~~~~~~ 100 (101)
.|.|.+|++++--.+..-.+..++++++.++|.
T Consensus 55 lHl~~~~~~~~n~~~l~Ft~~i~~iiv~GSiWI 87 (96)
T TIGR02847 55 LHLNTSSEQRWNLISLLFTILIIFILIGGSIWI 87 (96)
T ss_pred hhccCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888877666665556666777777764
No 60
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=21.32 E-value=4.2e+02 Score=21.00 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=29.3
Q ss_pred CCCceeeecCCcccccCccCCCCccccchhHHHHHHHHHHHhHHHHHHHHHHh
Q 034218 12 EKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYF 64 (101)
Q Consensus 12 ~~g~y~~~rd~e~~~~~~~~~rLPCcG~GiGWflFllGFf~~ipWY~gafl~~ 64 (101)
-.+||.++-|.||+. ++.. |- =+.|..|..+.+..-++..-+.
T Consensus 21 ~~~~yAllldye~g~-~v~N----~S-----~l~~vyG~~l~~~~~~~~~~~~ 63 (196)
T PF06770_consen 21 VDERYALLLDYENGS-SVFN----CS-----GLVFVYGPLLLLVTTWGVYKIT 63 (196)
T ss_pred ecCceeeEEEecCCC-ccEe----eh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999887 4443 33 2388899888766665554343
No 61
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=21.22 E-value=32 Score=32.57 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.0
Q ss_pred ccchhHHHHHHHHHHH------hHHHHHHHHH
Q 034218 37 FGCGVGWFSFLLGFVF------PLMWYYGTFL 62 (101)
Q Consensus 37 cG~GiGWflFllGFf~------~ipWY~gafl 62 (101)
=|+|.=|=+|++|+.. ++||+.||..
T Consensus 664 KgsgyH~DLlllgil~~icsllGLPw~~~a~p 695 (876)
T KOG1172|consen 664 KGSGYHLDLLLLGILTLICSLLGLPWSNAATV 695 (876)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCccccccc
Confidence 3789999999999963 5999999874
No 62
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=20.92 E-value=5.1e+02 Score=22.99 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhcccccCC
Q 034218 40 GVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKD 71 (101)
Q Consensus 40 GiGWflFllGFf~~ipWY~gafl~~c~~~r~D 71 (101)
+--|.+++..|.+.+.|-..+|........-+
T Consensus 11 ~~~~l~ll~a~~~~l~~n~~~~~~~~~~~~~~ 42 (555)
T COG2194 11 TKLSLSLLLAWYFLLLLNFAFFLQVFLINSLD 42 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44678888888888888888888777655433
Done!