Query 034218
Match_columns 101
No_of_seqs 57 out of 59
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 18:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y29_A Huwentoxin-X; A double- 38.6 9.2 0.00031 21.5 0.6 8 32-39 14-21 (28)
2 3s8f_C Cytochrome C oxidase po 23.4 1E+02 0.0035 17.5 3.3 21 44-64 11-31 (34)
3 2k1k_A Ephrin type-A receptor 22.6 1.1E+02 0.0039 17.2 3.8 23 76-98 10-32 (38)
4 2k9j_B Integrin beta-3; transm 18.3 1.5E+02 0.0052 16.9 4.0 14 71-84 2-15 (43)
5 2dw3_A Intrinsic membrane prot 17.8 90 0.0031 20.7 2.6 20 46-65 38-57 (77)
6 3l1l_A Arginine/agmatine antip 17.3 3E+02 0.01 20.0 6.5 7 69-75 377-383 (445)
7 2knc_B Integrin beta-3; transm 16.6 1.4E+02 0.0047 19.0 3.2 14 71-84 3-16 (79)
8 2jp3_A FXYD domain-containing 15.4 1.1E+02 0.0036 19.9 2.4 17 81-97 22-38 (67)
9 1bts_A BAND 3 anion transport 14.4 1.3E+02 0.0044 15.9 2.2 14 77-90 6-19 (26)
10 3ddl_A Xanthorhodopsin; carote 13.9 2.2E+02 0.0074 21.5 4.2 25 65-89 36-60 (273)
No 1
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=38.63 E-value=9.2 Score=21.46 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=6.3
Q ss_pred CCCccccc
Q 034218 32 KPLPCFGC 39 (101)
Q Consensus 32 ~rLPCcG~ 39 (101)
.+.||||.
T Consensus 14 ~riPCCG~ 21 (28)
T 1y29_A 14 QKIPCCGV 21 (28)
T ss_dssp CSCCBSSC
T ss_pred cccccccc
Confidence 37999984
No 2
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=23.37 E-value=1e+02 Score=17.50 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHh
Q 034218 44 FSFLLGFVFPLMWYYGTFLYF 64 (101)
Q Consensus 44 flFllGFf~~ipWY~gafl~~ 64 (101)
..|++|.++-+.|..--.+++
T Consensus 11 ~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHeeee
Confidence 468999999999986555443
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=22.63 E-value=1.1e+02 Score=17.18 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 034218 76 AGLAASAIAAMACSVVMLVIVVF 98 (101)
Q Consensus 76 pGl~AcaIAa~v~tia~ii~~~~ 98 (101)
.|-+|-.+-..+..+++++.+.+
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHHHHHHHHH
Confidence 44455544444445555554443
No 4
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=18.29 E-value=1.5e+02 Score=16.95 Aligned_cols=14 Identities=0% Similarity=0.150 Sum_probs=8.6
Q ss_pred CcccchhHHHHHHH
Q 034218 71 DPRERAGLAASAIA 84 (101)
Q Consensus 71 D~REkpGl~AcaIA 84 (101)
|+.|.|...|-..+
T Consensus 2 ~Cp~~~n~~~Iv~g 15 (43)
T 2k9j_B 2 ESPKGPDILVVLLS 15 (43)
T ss_dssp CCSSCCHHHHHHHH
T ss_pred CCCCCCCEeehHHH
Confidence 56677766665433
No 5
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=17.78 E-value=90 Score=20.73 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHHHHHHHHhc
Q 034218 46 FLLGFVFPLMWYYGTFLYFG 65 (101)
Q Consensus 46 FllGFf~~ipWY~gafl~~c 65 (101)
|.+.|++...|++|.+|.-=
T Consensus 38 ~~~~~~lv~l~~iG~~LPE~ 57 (77)
T 2dw3_A 38 FGTLLLIGFFRVVGRMLPIQ 57 (77)
T ss_dssp HHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHhCchh
Confidence 33444445888888887753
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=17.33 E-value=3e+02 Score=19.96 Aligned_cols=7 Identities=0% Similarity=-0.201 Sum_probs=3.8
Q ss_pred cCCcccc
Q 034218 69 RKDPRER 75 (101)
Q Consensus 69 r~D~REk 75 (101)
++.||+|
T Consensus 377 ~~~~~~r 383 (445)
T 3l1l_A 377 HGHFGKA 383 (445)
T ss_dssp SSSSGGG
T ss_pred hcCcccc
Confidence 4455666
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.62 E-value=1.4e+02 Score=19.04 Aligned_cols=14 Identities=0% Similarity=-0.016 Sum_probs=7.1
Q ss_pred CcccchhHHHHHHH
Q 034218 71 DPRERAGLAASAIA 84 (101)
Q Consensus 71 D~REkpGl~AcaIA 84 (101)
|+.|.+-.++-..+
T Consensus 3 ~Cp~~~n~~~Iv~g 16 (79)
T 2knc_B 3 MGSKGPDILVVLLS 16 (79)
T ss_dssp SSCSSSCSHHHHHH
T ss_pred CCCCCCCchhhHHH
Confidence 45566655554433
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=15.35 E-value=1.1e+02 Score=19.89 Aligned_cols=17 Identities=6% Similarity=0.204 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034218 81 SAIAAMACSVVMLVIVV 97 (101)
Q Consensus 81 caIAa~v~tia~ii~~~ 97 (101)
-.+|+++|.+.++|+++
T Consensus 22 LifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHc
Confidence 34677777777777664
No 9
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=14.43 E-value=1.3e+02 Score=15.93 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHH
Q 034218 77 GLAASAIAAMACSV 90 (101)
Q Consensus 77 Gl~AcaIAa~v~ti 90 (101)
.+++++++.++|++
T Consensus 6 ~i~s~ai~Gi~f~l 19 (26)
T 1bts_A 6 LLISTAVQGILFAL 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57788999888875
No 10
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=13.92 E-value=2.2e+02 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=15.4
Q ss_pred cccccCCcccchhHHHHHHHHHHHH
Q 034218 65 GNHCRKDPRERAGLAASAIAAMACS 89 (101)
Q Consensus 65 c~~~r~D~REkpGl~AcaIAa~v~t 89 (101)
....|+|+++|.=+..+++...+.+
T Consensus 36 ~~~~~v~~~~R~~~~v~~lit~IAa 60 (273)
T 3ddl_A 36 LARNNVAPKYRISMMVSALVVFIAG 60 (273)
T ss_dssp HGGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHccCCcceehhhHHHHHHHHHHH
Confidence 3446789999976655544444333
Done!