Query 034218
Match_columns 101
No_of_seqs 57 out of 59
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 18:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5d2 f.23.11.1 (D:261-307) 28.7 11 0.00077 21.5 1.3 23 70-92 3-25 (47)
2 d1eova2 d.104.1.1 (A:205-557) 23.5 6.1 0.00044 28.0 -0.6 10 34-43 316-325 (353)
3 d1b8aa2 d.104.1.1 (A:104-438) 23.4 6.1 0.00044 27.7 -0.6 11 33-43 297-307 (335)
4 d1y29a_ g.3.6.2 (A:) Huwentoxi 21.8 14 0.001 19.2 0.8 8 32-39 14-21 (28)
5 d2ih2a1 c.66.1.27 (A:21-243) D 19.7 11 0.00081 23.4 0.1 6 35-40 26-31 (223)
6 d1e1oa2 d.104.1.1 (A:161-502) 19.2 11 0.00077 26.6 -0.1 11 33-43 308-318 (342)
7 d1n9wa2 d.104.1.1 (A:111-414) 18.8 8.7 0.00063 26.5 -0.6 11 33-43 274-284 (304)
8 d1ylfa1 a.4.5.55 (A:5-142) Hyp 18.1 17 0.0013 22.3 0.8 15 11-25 57-71 (138)
9 d1nnha_ d.104.1.1 (A:) Hypothe 18.1 9.3 0.00068 27.0 -0.6 10 34-43 254-264 (293)
10 d1ppjd2 f.23.11.1 (D:196-241) 13.0 45 0.0033 18.4 1.6 21 70-90 3-23 (46)
No 1
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.72 E-value=11 Score=21.53 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=18.4
Q ss_pred CCcccchhHHHHHHHHHHHHHHH
Q 034218 70 KDPRERAGLAASAIAAMACSVVM 92 (101)
Q Consensus 70 ~D~REkpGl~AcaIAa~v~tia~ 92 (101)
+|-|.|-|+=|..|.++++.++.
T Consensus 3 hDeRK~mg~K~~~i~s~l~~~~~ 25 (47)
T d3cx5d2 3 HDERKRLGLKTVIILSSLYLLSI 25 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999988888666543
No 2
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.45 E-value=6.1 Score=28.03 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=8.7
Q ss_pred CccccchhHH
Q 034218 34 LPCFGCGVGW 43 (101)
Q Consensus 34 LPCcG~GiGW 43 (101)
-||+|+|+|+
T Consensus 316 PP~~G~glGi 325 (353)
T d1eova2 316 PPHAGGGIGL 325 (353)
T ss_dssp CCEEEEEEEH
T ss_pred CCCceeeeHH
Confidence 4899999995
No 3
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=23.39 E-value=6.1 Score=27.66 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=9.4
Q ss_pred CCccccchhHH
Q 034218 33 PLPCFGCGVGW 43 (101)
Q Consensus 33 rLPCcG~GiGW 43 (101)
--||.|+|+|+
T Consensus 297 ~Pp~~G~glGi 307 (335)
T d1b8aa2 297 MPPHGGFGLGA 307 (335)
T ss_dssp CCCEEEEEEEH
T ss_pred CCCCceeeeHH
Confidence 45999999996
No 4
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=21.80 E-value=14 Score=19.23 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=6.2
Q ss_pred CCCccccc
Q 034218 32 KPLPCFGC 39 (101)
Q Consensus 32 ~rLPCcG~ 39 (101)
...||||.
T Consensus 14 qkipccgv 21 (28)
T d1y29a_ 14 QKIPCCGV 21 (28)
T ss_dssp CSCCBSSC
T ss_pred ccccceee
Confidence 46899985
No 5
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=19.66 E-value=11 Score=23.37 Aligned_cols=6 Identities=33% Similarity=0.728 Sum_probs=5.5
Q ss_pred ccccch
Q 034218 35 PCFGCG 40 (101)
Q Consensus 35 PCcG~G 40 (101)
||||.|
T Consensus 26 p~~G~G 31 (223)
T d2ih2a1 26 PACAHG 31 (223)
T ss_dssp ETCTTC
T ss_pred CCCchH
Confidence 899998
No 6
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=19.20 E-value=11 Score=26.60 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=8.9
Q ss_pred CCccccchhHH
Q 034218 33 PLPCFGCGVGW 43 (101)
Q Consensus 33 rLPCcG~GiGW 43 (101)
--||+|+|+|.
T Consensus 308 ~pPh~G~glG~ 318 (342)
T d1e1oa2 308 LPPTAGLGIGI 318 (342)
T ss_dssp CCSEEEEEEEH
T ss_pred CCCccchhHHH
Confidence 34999999984
No 7
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=18.81 E-value=8.7 Score=26.52 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=9.3
Q ss_pred CCccccchhHH
Q 034218 33 PLPCFGCGVGW 43 (101)
Q Consensus 33 rLPCcG~GiGW 43 (101)
--||+|+|+|.
T Consensus 274 ~PP~~G~glGi 284 (304)
T d1n9wa2 274 MPPHGGFAIGA 284 (304)
T ss_dssp CCSEEEEEEEH
T ss_pred CCCCceeehHH
Confidence 46999999994
No 8
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=18.13 E-value=17 Score=22.26 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=10.7
Q ss_pred cCCCceeeecCCccc
Q 034218 11 REKGRYTLIRDPENF 25 (101)
Q Consensus 11 ~~~g~y~~~rd~e~~ 25 (101)
+++|.|.+.+|+++-
T Consensus 57 rG~GG~~L~~~p~~I 71 (138)
T d1ylfa1 57 RGPGGAGLLKDLHEI 71 (138)
T ss_dssp ---CCEEESSCGGGC
T ss_pred cCCCCceecCCHhhc
Confidence 446999999999874
No 9
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=18.09 E-value=9.3 Score=27.04 Aligned_cols=10 Identities=50% Similarity=1.006 Sum_probs=8.7
Q ss_pred C-ccccchhHH
Q 034218 34 L-PCFGCGVGW 43 (101)
Q Consensus 34 L-PCcG~GiGW 43 (101)
+ ||.|+|+|+
T Consensus 254 mPP~~G~glGi 264 (293)
T d1nnha_ 254 LKPSAGAGIGV 264 (293)
T ss_dssp CCCEEEEEEEH
T ss_pred CCCCCeEeehH
Confidence 5 899999985
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.00 E-value=45 Score=18.38 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=14.5
Q ss_pred CCcccchhHHHHHHHHHHHHH
Q 034218 70 KDPRERAGLAASAIAAMACSV 90 (101)
Q Consensus 70 ~D~REkpGl~AcaIAa~v~ti 90 (101)
+|-|.|-|+-+..+.+++..+
T Consensus 3 ~d~RK~mG~Kv~~~l~~l~~l 23 (46)
T d1ppjd2 3 HDHRKRMGLKMLLMMGLLLPL 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 477888888877766664443
Done!