Query 034219
Match_columns 101
No_of_seqs 95 out of 97
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 11:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01102 Glycophorin_A: Glycop 92.1 0.14 3.1E-06 37.0 2.7 33 18-51 60-92 (122)
2 PF02439 Adeno_E3_CR2: Adenovi 90.2 0.65 1.4E-05 27.8 3.8 28 26-53 8-35 (38)
3 PF07204 Orthoreo_P10: Orthore 86.6 0.58 1.3E-05 33.1 2.3 37 17-53 36-72 (98)
4 TIGR00822 EII-Sor PTS system, 74.1 6.5 0.00014 31.6 4.6 27 22-48 205-235 (265)
5 PF05283 MGC-24: Multi-glycosy 73.2 3.7 7.9E-05 31.7 2.8 22 24-45 161-182 (186)
6 PF13214 DUF4022: Protein of u 73.2 3.7 8E-05 28.0 2.5 24 29-52 8-47 (83)
7 TIGR00847 ccoS cytochrome oxid 70.8 8 0.00017 24.2 3.5 23 23-45 3-25 (51)
8 PF15347 PAG: Phosphoprotein a 69.4 4 8.7E-05 35.2 2.5 23 26-48 17-39 (428)
9 PF05151 PsbM: Photosystem II 68.4 4.3 9.3E-05 23.4 1.7 14 34-47 6-19 (31)
10 PF03597 CcoS: Cytochrome oxid 66.8 11 0.00024 22.9 3.4 23 23-45 2-24 (45)
11 PF11174 DUF2970: Protein of u 65.4 11 0.00024 23.8 3.4 19 20-38 28-46 (56)
12 PRK09757 PTS system N-acetylga 64.5 9 0.00019 30.7 3.5 28 22-49 206-238 (267)
13 PF04277 OAD_gamma: Oxaloaceta 63.9 5.6 0.00012 25.3 1.8 11 75-85 61-71 (79)
14 PRK13592 ubiA prenyltransferas 63.6 9.1 0.0002 31.5 3.4 29 20-48 232-261 (299)
15 PF15048 OSTbeta: Organic solu 62.4 9.7 0.00021 28.0 3.0 26 21-46 33-58 (125)
16 PF11980 DUF3481: Domain of un 61.9 9.4 0.0002 26.6 2.8 20 25-44 18-37 (87)
17 PRK11486 flagellar biosynthesi 60.1 20 0.00043 26.1 4.3 16 73-88 61-76 (124)
18 PF14575 EphA2_TM: Ephrin type 58.7 12 0.00025 24.6 2.7 23 30-52 7-29 (75)
19 PF02480 Herpes_gE: Alphaherpe 58.3 3.3 7.1E-05 35.3 0.0 16 15-30 343-358 (439)
20 TIGR02976 phageshock_pspB phag 56.5 13 0.00029 24.7 2.7 28 25-52 3-30 (75)
21 PRK12785 fliL flagellar basal 56.1 11 0.00024 27.8 2.5 19 75-94 70-90 (166)
22 PF06697 DUF1191: Protein of u 55.4 5.2 0.00011 32.7 0.7 61 14-91 208-270 (278)
23 PF02480 Herpes_gE: Alphaherpe 55.2 4 8.6E-05 34.8 0.0 44 10-53 342-385 (439)
24 PF14914 LRRC37AB_C: LRRC37A/B 55.0 16 0.00035 27.7 3.2 27 26-52 121-150 (154)
25 PF12911 OppC_N: N-terminal TM 54.8 15 0.00033 21.7 2.5 12 33-44 19-30 (56)
26 PF01299 Lamp: Lysosome-associ 54.2 12 0.00025 29.7 2.5 26 27-53 276-301 (306)
27 PF10215 Ost4: Oligosaccaryltr 53.4 24 0.00052 20.6 3.1 18 27-44 7-24 (35)
28 CHL00080 psbM photosystem II p 53.3 14 0.00031 21.6 2.2 13 33-45 5-17 (34)
29 PF06667 PspB: Phage shock pro 53.2 17 0.00036 24.4 2.7 28 25-52 3-30 (75)
30 PF05399 EVI2A: Ectropic viral 52.9 14 0.0003 29.7 2.7 19 30-48 128-146 (227)
31 PF09928 DUF2160: Predicted sm 52.7 15 0.00033 25.5 2.6 22 18-39 3-24 (88)
32 PF12273 RCR: Chitin synthesis 52.5 5.3 0.00012 28.0 0.3 20 32-51 4-23 (130)
33 COG5416 Uncharacterized integr 52.4 20 0.00044 25.4 3.2 29 16-44 54-82 (98)
34 TIGR03038 PS_II_psbM photosyst 51.4 16 0.00035 21.3 2.2 13 33-45 5-17 (33)
35 PF01102 Glycophorin_A: Glycop 51.4 24 0.00053 25.4 3.6 32 25-56 69-100 (122)
36 PF07172 GRP: Glycine rich pro 51.3 14 0.00031 25.4 2.3 7 45-51 22-28 (95)
37 PRK14094 psbM photosystem II r 51.1 15 0.00033 23.2 2.1 13 33-45 5-17 (50)
38 PHA03283 envelope glycoprotein 49.9 32 0.00069 30.8 4.7 30 17-48 393-424 (542)
39 PF13295 DUF4077: Domain of un 49.8 6.4 0.00014 29.7 0.4 27 25-51 114-140 (175)
40 PHA02909 hypothetical protein; 48.8 20 0.00044 23.7 2.6 9 41-49 49-57 (72)
41 PRK04989 psbM photosystem II r 48.2 19 0.00041 21.2 2.1 13 33-45 5-17 (35)
42 PF15339 Afaf: Acrosome format 47.7 26 0.00056 27.6 3.4 24 25-48 131-154 (200)
43 PF01998 DUF131: Protein of un 47.5 12 0.00026 24.3 1.4 26 20-45 31-59 (64)
44 PRK05419 putative sulfite oxid 46.3 26 0.00057 26.8 3.3 30 22-51 113-142 (205)
45 PF03229 Alpha_GJ: Alphavirus 45.5 70 0.0015 23.6 5.2 17 17-33 75-96 (126)
46 COG4594 FecB ABC-type Fe3+-cit 44.9 45 0.00097 27.9 4.6 21 30-50 6-26 (310)
47 COG4961 TadG Flp pilus assembl 43.9 24 0.00052 26.0 2.7 20 28-47 21-40 (185)
48 PF06305 DUF1049: Protein of u 43.7 43 0.00093 20.3 3.4 30 15-44 10-40 (68)
49 PF06596 PsbX: Photosystem II 42.1 44 0.00095 20.1 3.1 20 26-45 12-31 (39)
50 PRK13726 conjugal transfer pil 41.0 51 0.0011 25.1 4.1 27 26-52 16-42 (188)
51 PF15345 TMEM51: Transmembrane 40.7 27 0.00059 28.1 2.6 32 14-45 51-82 (233)
52 PF14241 DUF4341: Domain of un 40.4 46 0.001 21.0 3.2 22 21-44 1-22 (62)
53 PTZ00370 STEVOR; Provisional 40.1 31 0.00066 28.7 2.9 23 29-51 258-282 (296)
54 PF09049 SNN_transmemb: Stanni 39.8 76 0.0017 18.4 4.2 27 20-49 6-33 (33)
55 TIGR01478 STEVOR variant surfa 39.5 31 0.00068 28.6 2.9 23 29-51 262-286 (295)
56 PF04906 Tweety: Tweety; Inte 39.0 53 0.0011 27.5 4.2 19 37-55 372-393 (406)
57 COG3715 ManY Phosphotransferas 38.7 86 0.0019 25.6 5.3 13 21-33 204-216 (265)
58 PF06103 DUF948: Bacterial pro 38.5 30 0.00064 22.5 2.2 13 36-48 5-17 (90)
59 PRK09458 pspB phage shock prot 37.8 41 0.00088 22.7 2.8 28 25-52 3-30 (75)
60 PF05568 ASFV_J13L: African sw 37.7 47 0.001 25.7 3.5 19 33-51 39-57 (189)
61 PRK05696 fliL flagellar basal 37.4 1.4E+02 0.0031 21.7 5.9 20 75-94 71-90 (170)
62 PF05255 UPF0220: Uncharacteri 36.6 46 0.001 25.0 3.2 26 25-50 102-127 (166)
63 COG4736 CcoQ Cbb3-type cytochr 36.6 63 0.0014 20.8 3.4 27 26-52 5-31 (60)
64 PF15330 SIT: SHP2-interacting 36.6 52 0.0011 23.1 3.3 26 27-52 3-28 (107)
65 PRK15065 PTS system mannose-sp 35.3 90 0.002 25.1 4.9 27 22-48 206-236 (262)
66 PF11143 DUF2919: Protein of u 35.1 50 0.0011 24.3 3.2 23 29-52 57-79 (149)
67 PF10717 ODV-E18: Occlusion-de 34.7 65 0.0014 22.4 3.4 24 33-56 28-51 (85)
68 PHA00736 hypothetical protein 34.4 37 0.0008 23.0 2.1 14 26-39 57-70 (79)
69 PF13903 Claudin_2: PMP-22/EMP 34.3 67 0.0014 21.8 3.5 25 26-50 73-97 (172)
70 PRK13415 flagella biosynthesis 33.2 1.5E+02 0.0032 23.6 5.7 24 14-39 61-84 (219)
71 PF10883 DUF2681: Protein of u 32.3 49 0.0011 22.7 2.5 20 33-52 7-26 (87)
72 PF01794 Ferric_reduct: Ferric 32.3 93 0.002 20.1 3.8 27 22-48 76-102 (125)
73 PTZ00260 dolichyl-phosphate be 32.2 1.8E+02 0.0039 23.2 6.1 25 23-52 12-36 (333)
74 PF12048 DUF3530: Protein of u 32.1 60 0.0013 26.0 3.4 12 78-89 62-73 (310)
75 PF13807 GNVR: G-rich domain o 31.8 95 0.0021 19.8 3.7 19 20-38 54-72 (82)
76 PF15240 Pro-rich: Proline-ric 30.3 36 0.00077 26.3 1.8 13 33-45 2-14 (179)
77 KOG3626 Organic anion transpor 30.3 1.2E+02 0.0027 27.9 5.4 27 24-50 673-699 (735)
78 PRK10081 entericidin B membran 30.1 66 0.0014 20.1 2.6 21 30-50 6-26 (48)
79 PF10826 DUF2551: Protein of u 29.8 42 0.0009 23.1 1.8 19 27-45 43-61 (83)
80 PF04133 Vps55: Vacuolar prote 29.7 58 0.0013 23.3 2.7 19 33-51 6-24 (120)
81 cd02435 CCC1 CCC1. CCC1: This 29.3 86 0.0019 24.6 3.8 29 23-51 173-206 (241)
82 PF15471 TMEM171: Transmembran 29.1 96 0.0021 26.0 4.1 25 31-55 166-190 (319)
83 PLN00090 photosystem II reacti 28.9 82 0.0018 22.7 3.3 13 33-45 75-87 (113)
84 PRK12430 putative bifunctional 28.8 1.1E+02 0.0024 26.3 4.5 17 72-88 65-81 (379)
85 PLN00085 photosystem II reacti 28.7 49 0.0011 24.8 2.2 15 33-47 82-96 (149)
86 PRK07021 fliL flagellar basal 28.4 2.1E+02 0.0045 20.7 5.5 19 75-94 63-82 (162)
87 PRK11486 flagellar biosynthesi 28.4 78 0.0017 23.0 3.2 15 25-39 20-34 (124)
88 PRK10884 SH3 domain-containing 28.0 53 0.0012 25.3 2.4 17 25-42 174-190 (206)
89 PF10577 UPF0560: Uncharacteri 28.0 77 0.0017 29.7 3.7 23 24-46 273-295 (807)
90 PF14991 MLANA: Protein melan- 27.9 20 0.00043 26.2 0.0 18 34-51 32-49 (118)
91 PF01594 UPF0118: Domain of un 27.9 90 0.002 23.9 3.6 26 25-50 302-327 (327)
92 PRK11246 hypothetical protein; 27.7 99 0.0021 24.6 3.9 30 23-52 164-194 (218)
93 PF06800 Sugar_transport: Suga 27.5 77 0.0017 25.6 3.3 32 16-51 94-125 (269)
94 PF06387 Calcyon: D1 dopamine 27.4 46 0.001 26.0 1.9 14 34-47 85-98 (186)
95 PF06814 Lung_7-TM_R: Lung sev 27.3 1E+02 0.0022 24.0 3.9 38 14-51 38-75 (295)
96 PF05454 DAG1: Dystroglycan (D 26.7 21 0.00047 29.2 0.0 13 39-51 161-173 (290)
97 TIGR03007 pepcterm_ChnLen poly 26.4 1.1E+02 0.0025 25.3 4.2 30 22-51 411-440 (498)
98 TIGR03054 photo_alph_chp1 puta 26.2 1.9E+02 0.004 21.3 4.8 24 29-52 3-26 (135)
99 PF07589 VPEP: PEP-CTERM motif 26.1 85 0.0018 16.6 2.3 11 36-46 10-20 (25)
100 TIGR03363 VI_chp_8 type VI sec 26.0 33 0.00071 28.0 0.9 8 20-27 313-320 (353)
101 PF12259 DUF3609: Protein of u 26.0 59 0.0013 27.2 2.4 23 29-52 302-324 (361)
102 PF03381 CDC50: LEM3 (ligand-e 25.9 1.4E+02 0.003 23.8 4.5 32 19-50 241-272 (278)
103 cd01059 CCC1_like CCC1-related 25.6 1.3E+02 0.0028 21.3 3.9 29 23-51 79-113 (143)
104 COG4885 Uncharacterized protei 25.5 59 0.0013 27.1 2.3 23 29-51 289-311 (312)
105 CHL00066 psbH photosystem II p 25.4 1E+02 0.0022 20.8 3.1 21 30-50 43-63 (73)
106 PRK13792 lysozyme inhibitor; P 25.4 39 0.00084 24.6 1.1 21 31-51 4-24 (127)
107 PF04478 Mid2: Mid2 like cell 25.4 20 0.00044 27.1 -0.3 23 29-51 57-79 (154)
108 PTZ00201 amastin surface glyco 25.4 1.4E+02 0.0031 23.0 4.3 25 26-50 154-178 (192)
109 TIGR03501 gamma_C_targ gammapr 24.7 80 0.0017 17.2 2.1 17 34-50 5-21 (26)
110 PF13623 SurA_N_2: SurA N-term 24.4 71 0.0015 23.2 2.4 17 32-48 10-26 (145)
111 KOG0499 Cyclic nucleotide-gate 24.3 82 0.0018 29.3 3.2 25 20-44 425-449 (815)
112 PF11153 DUF2931: Protein of u 24.2 63 0.0014 24.2 2.1 18 35-52 5-22 (216)
113 PF13908 Shisa: Wnt and FGF in 24.1 37 0.00079 24.8 0.8 7 19-25 69-75 (179)
114 cd04821 PA_M28_1_2 PA_M28_1_2: 23.7 60 0.0013 24.0 1.9 15 73-87 45-59 (157)
115 PF04976 DmsC: DMSO reductase 23.6 1.2E+02 0.0025 23.9 3.6 27 15-41 141-168 (276)
116 PF11353 DUF3153: Protein of u 23.5 96 0.0021 23.3 3.0 7 14-20 177-183 (209)
117 cd07387 MPP_PolD2_C PolD2 (DNA 23.5 50 0.0011 26.2 1.5 16 81-96 97-112 (257)
118 TIGR02830 spore_III_AG stage I 23.2 76 0.0016 24.4 2.4 18 30-47 5-22 (186)
119 PRK14061 unknown domain/lipoat 23.1 1.7E+02 0.0037 26.2 4.8 30 23-52 164-194 (562)
120 PF06365 CD34_antigen: CD34/Po 22.6 48 0.001 25.9 1.3 28 23-51 99-129 (202)
121 PHA03231 glycoprotein BALF4; P 22.5 74 0.0016 29.8 2.6 29 17-49 698-726 (829)
122 PRK02624 psbH photosystem II r 22.3 1.3E+02 0.0028 19.9 3.0 21 30-50 31-51 (64)
123 PRK13823 conjugal transfer pro 22.3 75 0.0016 21.9 2.0 11 30-40 25-35 (94)
124 PF04964 Flp_Fap: Flp/Fap pili 21.8 86 0.0019 18.6 2.0 13 31-43 14-26 (46)
125 PF15470 DUF4637: Domain of un 21.6 24 0.00051 27.1 -0.6 17 14-31 90-106 (173)
126 PF04961 FTCD_C: Formiminotran 21.4 1.2E+02 0.0027 22.6 3.2 21 28-48 20-40 (184)
127 COG1704 LemA Uncharacterized c 21.2 96 0.0021 24.1 2.6 23 30-52 4-26 (185)
128 PF09680 Tiny_TM_bacill: Prote 21.2 69 0.0015 17.5 1.3 19 29-48 5-23 (24)
129 TIGR03750 conj_TIGR03750 conju 21.1 1.5E+02 0.0032 21.2 3.4 28 22-49 40-69 (111)
130 PF05915 DUF872: Eukaryotic pr 21.0 1.8E+02 0.0038 20.6 3.8 27 23-49 39-65 (115)
131 PLN00055 photosystem II reacti 20.6 1.4E+02 0.0031 20.1 3.0 21 30-50 43-63 (73)
132 PF07937 DUF1686: Protein of u 20.6 94 0.002 24.3 2.5 18 33-50 129-146 (185)
133 cd02437 CCC1_like_1 CCC1-relat 20.4 1.8E+02 0.0039 21.3 3.8 15 37-51 131-145 (175)
134 PRK12361 hypothetical protein; 20.2 1.4E+02 0.003 25.5 3.6 14 37-50 37-50 (547)
No 1
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=92.14 E-value=0.14 Score=36.98 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=23.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219 18 QWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 18 ~W~SPvPYLFgGLa~MlgLIAvALliLaCSy~k~ 51 (101)
.+..|+ -....|++|.|+|++.|||+-|-+|+.
T Consensus 60 ~fs~~~-i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 60 RFSEPA-IIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp SSS-TC-HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred Cccccc-eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444454 244568899999999999988887554
No 2
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=90.17 E-value=0.65 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.577 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034219 26 MFGGLLLVFGVIAVALMFLACCHDKSSI 53 (101)
Q Consensus 26 LFgGLa~MlgLIAvALliLaCSy~k~~s 53 (101)
...|..+-|.+|.+..++-+|-|||...
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 5677778888888888999999999753
No 3
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=86.62 E-value=0.58 Score=33.15 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=29.2
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034219 17 VQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSI 53 (101)
Q Consensus 17 ~~W~SPvPYLFgGLa~MlgLIAvALliLaCSy~k~~s 53 (101)
+..-+=.|||-+|=+++|.||-++|+.-.|.+||.+.
T Consensus 36 S~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~ 72 (98)
T PF07204_consen 36 SSFVAYWPYLAAGGGLILILIIIALVCCCRAKHKTSA 72 (98)
T ss_pred ehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhhhHh
Confidence 5566678999999888888888888777777788543
No 4
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=74.07 E-value=6.5 Score=31.62 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHHHH----HHHHHHHHHhhh
Q 034219 22 PLPYMFGGLLLVFGV----IAVALMFLACCH 48 (101)
Q Consensus 22 PvPYLFgGLa~MlgL----IAvALliLaCSy 48 (101)
=.||+|.|+.++--+ +++|++-++|.+
T Consensus 205 ~~~ff~lGF~laayl~l~~l~iAiig~~~A~ 235 (265)
T TIGR00822 205 LMPFFYLGFLFAAYTDFSLLAFGAVGGAGAL 235 (265)
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 479999999876443 666666555554
No 5
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=73.21 E-value=3.7 Score=31.69 Aligned_cols=22 Identities=27% Similarity=0.720 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 034219 24 PYMFGGLLLVFGVIAVALMFLA 45 (101)
Q Consensus 24 PYLFgGLa~MlgLIAvALliLa 45 (101)
.-++||+.+.|||+||.++++-
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFLYK 182 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh
Confidence 3489999999999999887753
No 6
>PF13214 DUF4022: Protein of unknown function (DUF4022)
Probab=73.17 E-value=3.7 Score=27.96 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHH---------------Hhhh-cccC
Q 034219 29 GLLLVFGVIAVALMFL---------------ACCH-DKSS 52 (101)
Q Consensus 29 GLa~MlgLIAvALliL---------------aCSy-~k~~ 52 (101)
|+--+|.++.+||++| .||| ||-+
T Consensus 8 gm~~imsistlallllaevlvaiiligisieicsygwkks 47 (83)
T PF13214_consen 8 GMNHIMSISTLALLLLAEVLVAIILIGISIEICSYGWKKS 47 (83)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhceeeeeccccccC
Confidence 3444555566666555 4999 7754
No 7
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=70.80 E-value=8 Score=24.22 Aligned_cols=23 Identities=9% Similarity=0.249 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 034219 23 LPYMFGGLLLVFGVIAVALMFLA 45 (101)
Q Consensus 23 vPYLFgGLa~MlgLIAvALliLa 45 (101)
+-|+..++++++|+++++.++.+
T Consensus 3 il~~LIpiSl~l~~~~l~~f~Wa 25 (51)
T TIGR00847 3 ILTILIPISLLLGGVGLVAFLWS 25 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999998888777766
No 8
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=69.44 E-value=4 Score=35.22 Aligned_cols=23 Identities=17% Similarity=0.566 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 034219 26 MFGGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 26 LFgGLa~MlgLIAvALliLaCSy 48 (101)
|.|+||++--++-|.+||+.||-
T Consensus 17 lwgsLaav~~f~lis~LifLCsS 39 (428)
T PF15347_consen 17 LWGSLAAVTTFLLISFLIFLCSS 39 (428)
T ss_pred eehHHHHHHHHHHHHHHHHHhhc
Confidence 56899998888888899998886
No 9
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=68.43 E-value=4.3 Score=23.37 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhh
Q 034219 34 FGVIAVALMFLACC 47 (101)
Q Consensus 34 lgLIAvALliLaCS 47 (101)
+|+||.||.|+.++
T Consensus 6 l~fiAtaLfi~iPt 19 (31)
T PF05151_consen 6 LAFIATALFILIPT 19 (31)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 57788888887664
No 10
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=66.81 E-value=11 Score=22.87 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 034219 23 LPYMFGGLLLVFGVIAVALMFLA 45 (101)
Q Consensus 23 vPYLFgGLa~MlgLIAvALliLa 45 (101)
+-|+..+++.++|+++++.++.+
T Consensus 2 ~l~~lip~sl~l~~~~l~~f~Wa 24 (45)
T PF03597_consen 2 ILYILIPVSLILGLIALAAFLWA 24 (45)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888887777665
No 11
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=65.44 E-value=11 Score=23.80 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=14.4
Q ss_pred cCChhHHHHHHHHHHHHHH
Q 034219 20 NSPLPYMFGGLLLVFGVIA 38 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIA 38 (101)
.+|.||++.|+.+.+.+|+
T Consensus 28 ~~p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 28 GSPVHFIIVGIILAALFVA 46 (56)
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 4799999999876665554
No 12
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=64.49 E-value=9 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHH--HH---HHHHHHHHHHhhhc
Q 034219 22 PLPYMFGGLLLV--FG---VIAVALMFLACCHD 49 (101)
Q Consensus 22 PvPYLFgGLa~M--lg---LIAvALliLaCSy~ 49 (101)
=.||+|.|+.+. ++ +|++|++-++|.+.
T Consensus 206 ~~~ff~lGF~l~ayl~~~~~i~iaiig~~iA~~ 238 (267)
T PRK09757 206 YIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVY 238 (267)
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Confidence 479999998764 32 57777776666653
No 13
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=63.86 E-value=5.6 Score=25.31 Aligned_cols=11 Identities=18% Similarity=0.051 Sum_probs=6.5
Q ss_pred CCCCceEEEec
Q 034219 75 ALEPKIVVIMA 85 (101)
Q Consensus 75 ~~e~kivVIMA 85 (101)
+.++.+.||+|
T Consensus 61 ~~~~~vAaI~A 71 (79)
T PF04277_consen 61 DDPELVAAIAA 71 (79)
T ss_pred CChHHHHHHHH
Confidence 55566666654
No 14
>PRK13592 ubiA prenyltransferase; Provisional
Probab=63.57 E-value=9.1 Score=31.49 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=23.1
Q ss_pred cCChhHH-HHHHHHHHHHHHHHHHHHHhhh
Q 034219 20 NSPLPYM-FGGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 20 ~SPvPYL-FgGLa~MlgLIAvALliLaCSy 48 (101)
-||.||+ ++.++..+.+++.++++++|..
T Consensus 232 ~s~lp~~~~g~~g~~~l~~~~~~~l~~~~~ 261 (299)
T PRK13592 232 TNFALLWNISHVGVVVLVLNVIWMTVQFEQ 261 (299)
T ss_pred HhhHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4789999 8877777777888888888863
No 15
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=62.39 E-value=9.7 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHh
Q 034219 21 SPLPYMFGGLLLVFGVIAVALMFLAC 46 (101)
Q Consensus 21 SPvPYLFgGLa~MlgLIAvALliLaC 46 (101)
||--|-..+|+++..+|.|.||...-
T Consensus 33 tpWNysiL~Ls~vvlvi~~~LLgrsi 58 (125)
T PF15048_consen 33 TPWNYSILALSFVVLVISFFLLGRSI 58 (125)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 56669999999999999999987643
No 16
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=61.91 E-value=9.4 Score=26.56 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034219 25 YMFGGLLLVFGVIAVALMFL 44 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliL 44 (101)
|++.|=++.+.|++++|.++
T Consensus 18 yiiA~gga~llL~~v~l~vv 37 (87)
T PF11980_consen 18 YIIAMGGALLLLVAVCLGVV 37 (87)
T ss_pred HHHhhccHHHHHHHHHHHHH
Confidence 56777777777788875544
No 17
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=60.10 E-value=20 Score=26.08 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=11.3
Q ss_pred CCCCCCceEEEecCCC
Q 034219 73 PAALEPKIVVIMAGDD 88 (101)
Q Consensus 73 ~~~~e~kivVIMAGd~ 88 (101)
++-.+|||+||=.||+
T Consensus 61 slG~RErvvvVeV~~~ 76 (124)
T PRK11486 61 SLGARERVVIVDVEDA 76 (124)
T ss_pred ccCCccEEEEEEECCE
Confidence 4556788888877764
No 18
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=58.74 E-value=12 Score=24.58 Aligned_cols=23 Identities=9% Similarity=0.327 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC
Q 034219 30 LLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k~~ 52 (101)
++.++.|+++.++++.|.+++..
T Consensus 7 ~~g~~~ll~~v~~~~~~~rr~~~ 29 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVCFRRCKY 29 (75)
T ss_dssp HHHHHHHHHHHHHHHCCCTT---
T ss_pred HHHHHHHHHhheeEEEEEeeEcC
Confidence 44455555566667777776653
No 19
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=58.32 E-value=3.3 Score=35.29 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=0.0
Q ss_pred ccccccCChhHHHHHH
Q 034219 15 GLVQWNSPLPYMFGGL 30 (101)
Q Consensus 15 ~~~~W~SPvPYLFgGL 30 (101)
....|.++.-.+.+++
T Consensus 343 ~p~~~~~~~~~~l~vV 358 (439)
T PF02480_consen 343 PPSPRTSRGAALLGVV 358 (439)
T ss_dssp ----------------
T ss_pred CCCCCCCcccchHHHH
Confidence 3355666655555554
No 20
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=56.49 E-value=13 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy~k~~ 52 (101)
+.|..+-+++++|-||.+-|..-|++..
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577777788888888888888886443
No 21
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.08 E-value=11 Score=27.79 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=13.1
Q ss_pred CCCCceEEEecCCCC--Cceec
Q 034219 75 ALEPKIVVIMAGDDH--PTRIA 94 (101)
Q Consensus 75 ~~e~kivVIMAGd~~--PTfLA 94 (101)
+.++ |+|=+++++. ..||-
T Consensus 70 ~l~~-fvVNL~~~~~~~~ryLk 90 (166)
T PRK12785 70 DVPD-MLVNLAGDPGERVQYLK 90 (166)
T ss_pred EcCC-EEEECCCCCCCcceEEE
Confidence 4444 9999988753 57863
No 22
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=55.38 E-value=5.2 Score=32.69 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=31.2
Q ss_pred cccccccCChhHHHHH-HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccccccCCCCCCCCCceEEEecCCCC-Cc
Q 034219 14 AGLVQWNSPLPYMFGG-LLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAIDPPAALEPKIVVIMAGDDH-PT 91 (101)
Q Consensus 14 ~~~~~W~SPvPYLFgG-La~MlgLIAvALliLaCSy~k~~s~~~s~~~~~~ek~~~~~~~~~~~e~kivVIMAGd~~-PT 91 (101)
...|-|. +.+| ..-.++|+-++++++.|.++|....- .++|...+.+|..=+.|.|+.+ |+
T Consensus 208 ~~~~~W~-----iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~------------~eMEr~A~~gE~L~~~~VG~sraPs 270 (278)
T PF06697_consen 208 KRSWWWK-----IVVGVVGGVVLLGLLSLLVAMLVRYKRKKKI------------EEMERRAEEGEALQMSWVGGSRAPS 270 (278)
T ss_pred CcceeEE-----EEEEehHHHHHHHHHHHHHHhhhhhhHHHHH------------HHHHHhhccCceeeeEEEccccCcc
Confidence 5667787 3333 22222345555666677766642111 1122233445555588888875 43
No 23
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=55.19 E-value=4 Score=34.79 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034219 10 APSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSI 53 (101)
Q Consensus 10 ~~~~~~~~~W~SPvPYLFgGLa~MlgLIAvALliLaCSy~k~~s 53 (101)
++...+...|..-+-.+.|+.++++.++.++++++.|.+||...
T Consensus 342 ~~p~~~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~ 385 (439)
T PF02480_consen 342 APPSPRTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQR 385 (439)
T ss_dssp --------------------------------------------
T ss_pred CCCCCCCCcccchHHHHHHHHHHHHHHHHHhheeeeehhccccc
Confidence 33457778889989999888888888888888888888876543
No 24
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=55.03 E-value=16 Score=27.75 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=19.1
Q ss_pred HHHHHH---HHHHHHHHHHHHHHhhhcccC
Q 034219 26 MFGGLL---LVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 26 LFgGLa---~MlgLIAvALliLaCSy~k~~ 52 (101)
|.+++. +++-||.+.-||-.||||+.+
T Consensus 121 lilaisvtvv~~iliii~CLiei~shr~a~ 150 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEICSHRRAS 150 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 455544 445677888888899999864
No 25
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=54.81 E-value=15 Score=21.70 Aligned_cols=12 Identities=33% Similarity=0.730 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 034219 33 VFGVIAVALMFL 44 (101)
Q Consensus 33 MlgLIAvALliL 44 (101)
|+|+|-+.++++
T Consensus 19 ~~gl~il~~~vl 30 (56)
T PF12911_consen 19 VIGLIILLILVL 30 (56)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 26
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=54.22 E-value=12 Score=29.72 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034219 27 FGGLLLVFGVIAVALMFLACCHDKSSI 53 (101)
Q Consensus 27 FgGLa~MlgLIAvALliLaCSy~k~~s 53 (101)
..|+++ .|||.+.|+.-.|.|||...
T Consensus 276 aVG~~L-a~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 276 AVGAAL-AGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHH-HHHHHHHHHhheeEeccccc
Confidence 344443 56677777777788877654
No 27
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=53.43 E-value=24 Score=20.59 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034219 27 FGGLLLVFGVIAVALMFL 44 (101)
Q Consensus 27 FgGLa~MlgLIAvALliL 44 (101)
...||-.||+.++.|+++
T Consensus 7 L~~lan~lG~~~~~LIVl 24 (35)
T PF10215_consen 7 LYTLANFLGVAAMVLIVL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346788889888888876
No 28
>CHL00080 psbM photosystem II protein M
Probab=53.25 E-value=14 Score=21.63 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 034219 33 VFGVIAVALMFLA 45 (101)
Q Consensus 33 MlgLIAvALliLa 45 (101)
.+|+||.+|.|+.
T Consensus 5 ~lgfiAt~LFi~i 17 (34)
T CHL00080 5 ILAFIATALFILV 17 (34)
T ss_pred HHHHHHHHHHHHH
Confidence 3677777777764
No 29
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=53.18 E-value=17 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.117 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy~k~~ 52 (101)
+.|...-+++++|-||.+-|..-|++..
T Consensus 3 ~~fl~~plivf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 3 FEFLFVPLIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777888888887777775543
No 30
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=52.90 E-value=14 Score=29.70 Aligned_cols=19 Identities=26% Similarity=0.695 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 034219 30 LLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy 48 (101)
.|....||-+|.|+|.|..
T Consensus 128 ~amLIClIIIAVLfLICT~ 146 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTL 146 (227)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4566778999999999964
No 31
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=52.71 E-value=15 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=18.4
Q ss_pred cccCChhHHHHHHHHHHHHHHH
Q 034219 18 QWNSPLPYMFGGLLLVFGVIAV 39 (101)
Q Consensus 18 ~W~SPvPYLFgGLa~MlgLIAv 39 (101)
.|..|+--.|+++++||+..++
T Consensus 3 aWT~ptA~FF~~I~~~L~~mtv 24 (88)
T PF09928_consen 3 AWTWPTAIFFICIALMLAGMTV 24 (88)
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 4889999999999998877654
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=52.49 E-value=5.3 Score=27.97 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 034219 32 LVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 32 ~MlgLIAvALliLaCSy~k~ 51 (101)
+.++||+++||+|+..++..
T Consensus 4 l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666654
No 33
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=52.40 E-value=20 Score=25.39 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=24.6
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHH
Q 034219 16 LVQWNSPLPYMFGGLLLVFGVIAVALMFL 44 (101)
Q Consensus 16 ~~~W~SPvPYLFgGLa~MlgLIAvALliL 44 (101)
+++|+=|.=-.+.|-++|-+||++.+.+-
T Consensus 54 fg~~~~PLilvil~s~v~G~Li~~~~~~~ 82 (98)
T COG5416 54 FGQWELPLILVILGAAVVGALIAMFAGIA 82 (98)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 47788888889999999999999887765
No 34
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=51.42 E-value=16 Score=21.28 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 034219 33 VFGVIAVALMFLA 45 (101)
Q Consensus 33 MlgLIAvALliLa 45 (101)
.+|+||.+|.|+.
T Consensus 5 ~l~fiAt~Lfi~i 17 (33)
T TIGR03038 5 ILGFIATLLFILV 17 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3577777777664
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.38 E-value=24 Score=25.44 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCHDKSSITGP 56 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy~k~~s~~~ 56 (101)
-.||-+|.++|+|++.+..+-=-++|...+-.
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~ 100 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKKSSSDVQ 100 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 36788888888888888888888888876653
No 36
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.28 E-value=14 Score=25.36 Aligned_cols=7 Identities=0% Similarity=-0.069 Sum_probs=3.0
Q ss_pred Hhhhccc
Q 034219 45 ACCHDKS 51 (101)
Q Consensus 45 aCSy~k~ 51 (101)
.++-+.+
T Consensus 22 evaa~~~ 28 (95)
T PF07172_consen 22 EVAAREL 28 (95)
T ss_pred hhhhHHh
Confidence 4444443
No 37
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=51.06 E-value=15 Score=23.17 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q 034219 33 VFGVIAVALMFLA 45 (101)
Q Consensus 33 MlgLIAvALliLa 45 (101)
.||+||.+|.|+.
T Consensus 5 ~lgfiAtaLFi~i 17 (50)
T PRK14094 5 NFGFVASLLFVGV 17 (50)
T ss_pred HHHHHHHHHHHHH
Confidence 4677777777664
No 38
>PHA03283 envelope glycoprotein E; Provisional
Probab=49.86 E-value=32 Score=30.75 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=24.3
Q ss_pred ccccCChhH--HHHHHHHHHHHHHHHHHHHHhhh
Q 034219 17 VQWNSPLPY--MFGGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 17 ~~W~SPvPY--LFgGLa~MlgLIAvALliLaCSy 48 (101)
..|- -+| +++|+.+..||+.++|.+.+|-+
T Consensus 393 ~~~~--~~~l~~~~~~~~~~~~~~~~l~vw~c~~ 424 (542)
T PHA03283 393 GAWT--RHYLAFLLAIICTCAALLVALVVWGCIL 424 (542)
T ss_pred Cccc--cccchhHHHHHHHHHHHHHHHhhhheee
Confidence 3553 555 58888999999999999999987
No 39
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=49.84 E-value=6.4 Score=29.68 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy~k~ 51 (101)
||---|.++||-+|+.|-...||||..
T Consensus 114 ylserlvvilggvavvltfilcsywpe 140 (175)
T PF13295_consen 114 YLSERLVVILGGVAVVLTFILCSYWPE 140 (175)
T ss_pred HHHhHHHHhcccchheeehhhhhcChH
Confidence 555667888899999999999999974
No 40
>PHA02909 hypothetical protein; Provisional
Probab=48.83 E-value=20 Score=23.71 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=6.6
Q ss_pred HHHHHhhhc
Q 034219 41 LMFLACCHD 49 (101)
Q Consensus 41 LliLaCSy~ 49 (101)
..||||||-
T Consensus 49 ftilacsyv 57 (72)
T PHA02909 49 FTILACSYV 57 (72)
T ss_pred HHHHHHHHH
Confidence 347899984
No 41
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=48.23 E-value=19 Score=21.24 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 034219 33 VFGVIAVALMFLA 45 (101)
Q Consensus 33 MlgLIAvALliLa 45 (101)
.+|+||.+|.|+.
T Consensus 5 ~lgfiAt~Lfi~i 17 (35)
T PRK04989 5 DLGFVASLLFVLV 17 (35)
T ss_pred HHHHHHHHHHHHH
Confidence 3566777776653
No 42
>PF15339 Afaf: Acrosome formation-associated factor
Probab=47.68 E-value=26 Score=27.57 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy 48 (101)
=|..|+.+|--+|-|.||++.|.-
T Consensus 131 kLmLGIsLmTl~lfv~Ll~~c~at 154 (200)
T PF15339_consen 131 KLMLGISLMTLFLFVILLAFCSAT 154 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999887753
No 43
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=47.55 E-value=12 Score=24.31 Aligned_cols=26 Identities=35% Similarity=0.687 Sum_probs=15.8
Q ss_pred cCChhHHHHH---HHHHHHHHHHHHHHHH
Q 034219 20 NSPLPYMFGG---LLLVFGVIAVALMFLA 45 (101)
Q Consensus 20 ~SPvPYLFgG---La~MlgLIAvALliLa 45 (101)
==|+|-.||. ++..+.++|+.|+++.
T Consensus 31 IGPIPIvFGs~~~~~~~~~ilaiil~i~~ 59 (64)
T PF01998_consen 31 IGPIPIVFGSSPRIAKIAMILAIILMILA 59 (64)
T ss_pred EecccEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 3488888885 4555555555555543
No 44
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=46.34 E-value=26 Score=26.77 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219 22 PLPYMFGGLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 22 PvPYLFgGLa~MlgLIAvALliLaCSy~k~ 51 (101)
..||+..|+.+++.|+.+|+.-.-+.+||.
T Consensus 113 ~~~~i~~G~ia~~lLl~LaiTS~~~~~rrL 142 (205)
T PRK05419 113 KRPYITVGMAAFLILLPLALTSTRASQRRL 142 (205)
T ss_pred hchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 478999999999999999999888887764
No 45
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=45.48 E-value=70 Score=23.62 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=11.5
Q ss_pred ccccCC-----hhHHHHHHHHH
Q 034219 17 VQWNSP-----LPYMFGGLLLV 33 (101)
Q Consensus 17 ~~W~SP-----vPYLFgGLa~M 33 (101)
.+|.+| +|-++|||++.
T Consensus 75 sp~ps~p~d~aLp~VIGGLcaL 96 (126)
T PF03229_consen 75 SPGPSPPVDFALPLVIGGLCAL 96 (126)
T ss_pred CCCCCCCcccchhhhhhHHHHH
Confidence 455554 57788888764
No 46
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=44.90 E-value=45 Score=27.87 Aligned_cols=21 Identities=14% Similarity=0.458 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 034219 30 LLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k 50 (101)
.+.|++|+..-||+-+||-.-
T Consensus 6 ~~~i~~lll~lllva~C~~s~ 26 (310)
T COG4594 6 TAIILTLLLLLLLVAACSSSD 26 (310)
T ss_pred hHHHHHHHHHHHHHHHhcCcC
Confidence 467888998889999998653
No 47
>COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion]
Probab=43.93 E-value=24 Score=26.02 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034219 28 GGLLLVFGVIAVALMFLACC 47 (101)
Q Consensus 28 gGLa~MlgLIAvALliLaCS 47 (101)
|..|++++||+.-|++|.+-
T Consensus 21 Ga~AVeFAlvap~ll~l~~g 40 (185)
T COG4961 21 GAAAVEFALVAPPLLLLVFG 40 (185)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 56789999999999988764
No 48
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.70 E-value=43 Score=20.35 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=16.9
Q ss_pred ccccccCChhH-HHHHHHHHHHHHHHHHHHH
Q 034219 15 GLVQWNSPLPY-MFGGLLLVFGVIAVALMFL 44 (101)
Q Consensus 15 ~~~~W~SPvPY-LFgGLa~MlgLIAvALliL 44 (101)
.+..|+.+.|. +...+++.+|.|...|+.+
T Consensus 10 ~~~~~~~~~pl~l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 10 NFLFGQFPLPLGLLILIAFLLGALLGWLLSL 40 (68)
T ss_pred EEEeeeccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777775 4445555566655554443
No 49
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=42.12 E-value=44 Score=20.05 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034219 26 MFGGLLLVFGVIAVALMFLA 45 (101)
Q Consensus 26 LFgGLa~MlgLIAvALliLa 45 (101)
|+.|-++.++.|++||+...
T Consensus 12 l~aG~~iVv~~i~~ali~VS 31 (39)
T PF06596_consen 12 LVAGAVIVVIPIAGALIFVS 31 (39)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhheEEEe
Confidence 66777788888898888753
No 50
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=41.00 E-value=51 Score=25.10 Aligned_cols=27 Identities=7% Similarity=-0.076 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034219 26 MFGGLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 26 LFgGLa~MlgLIAvALliLaCSy~k~~ 52 (101)
.|.+|+..+.|..++.++|+|.-|+..
T Consensus 16 ~~~~l~~l~~~~~~~~v~l~~~~~~~~ 42 (188)
T PRK13726 16 AFIFLSVLIVLSLSVNVIQGVNNYRLQ 42 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388888888888899999999988764
No 51
>PF15345 TMEM51: Transmembrane protein 51
Probab=40.67 E-value=27 Score=28.07 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=25.8
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 034219 14 AGLVQWNSPLPYMFGGLLLVFGVIAVALMFLA 45 (101)
Q Consensus 14 ~~~~~W~SPvPYLFgGLa~MlgLIAvALliLa 45 (101)
+....=.+-|-|+..|-++||-|+++.|-|--
T Consensus 51 ~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~ 82 (233)
T PF15345_consen 51 GNLKSKTFSVAYVLVGSGVALLLLSICLSIRD 82 (233)
T ss_pred CcccceeEEEEEehhhHHHHHHHHHHHHHHHH
Confidence 44566667899999999999999998887754
No 52
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=40.42 E-value=46 Score=20.96 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 034219 21 SPLPYMFGGLLLVFGVIAVALMFL 44 (101)
Q Consensus 21 SPvPYLFgGLa~MlgLIAvALliL 44 (101)
||.+.++||+ ++|+-++.|+.+
T Consensus 1 Tp~~~l~GG~--lIGla~~~ll~~ 22 (62)
T PF14241_consen 1 TPWSALIGGL--LIGLAASLLLLL 22 (62)
T ss_pred CccHHHHHHH--HHHHHHHHHHHH
Confidence 5788888885 566666655554
No 53
>PTZ00370 STEVOR; Provisional
Probab=40.11 E-value=31 Score=28.70 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=15.7
Q ss_pred HHH-HHHHHHHHHHHHH-Hhhhccc
Q 034219 29 GLL-LVFGVIAVALMFL-ACCHDKS 51 (101)
Q Consensus 29 GLa-~MlgLIAvALliL-aCSy~k~ 51 (101)
|+| +.|-++||.|+|| .|=|||.
T Consensus 258 giaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444 4555689999998 6777553
No 54
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=39.76 E-value=76 Score=18.35 Aligned_cols=27 Identities=37% Similarity=0.415 Sum_probs=14.4
Q ss_pred cCChhHHHHHHHHHHHHHHHH-HHHHHhhhc
Q 034219 20 NSPLPYMFGGLLLVFGVIAVA-LMFLACCHD 49 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIAvA-LliLaCSy~ 49 (101)
|||+- |-.-...-|||+| |-+|.|-.|
T Consensus 6 hsptt---gvvti~viliavaalg~licgcw 33 (33)
T PF09049_consen 6 HSPTT---GVVTIIVILIAVAALGALICGCW 33 (33)
T ss_dssp TTTHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc---cEEEehhHHHHHHHHhhhheecC
Confidence 55553 3334445567775 445666544
No 55
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=39.48 E-value=31 Score=28.63 Aligned_cols=23 Identities=26% Similarity=0.454 Sum_probs=15.7
Q ss_pred HHH-HHHHHHHHHHHHH-Hhhhccc
Q 034219 29 GLL-LVFGVIAVALMFL-ACCHDKS 51 (101)
Q Consensus 29 GLa-~MlgLIAvALliL-aCSy~k~ 51 (101)
|+| +.|-++||.|+|| .|=|||.
T Consensus 262 giaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444 4555689999998 6777553
No 56
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=38.97 E-value=53 Score=27.54 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=9.2
Q ss_pred HHHHHHHHHhh--h-cccCCCC
Q 034219 37 IAVALMFLACC--H-DKSSITG 55 (101)
Q Consensus 37 IAvALliLaCS--y-~k~~s~~ 55 (101)
.|++|.++.|+ + |+.-.+.
T Consensus 372 ~al~f~~~v~~~~~~W~~~~~~ 393 (406)
T PF04906_consen 372 AALLFSILVCVVSHAWKYFRRR 393 (406)
T ss_pred HHHHHHHHHHHhhHHHHHhcCC
Confidence 44555555555 3 5544433
No 57
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=38.68 E-value=86 Score=25.57 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=10.4
Q ss_pred CChhHHHHHHHHH
Q 034219 21 SPLPYMFGGLLLV 33 (101)
Q Consensus 21 SPvPYLFgGLa~M 33 (101)
.=.||+|.|+.+.
T Consensus 204 ~~~pff~lGFv~a 216 (265)
T COG3715 204 ELIPFFFLGFVLA 216 (265)
T ss_pred chhHHHHHHHHHH
Confidence 4479999998765
No 58
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=38.51 E-value=30 Score=22.49 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhh
Q 034219 36 VIAVALMFLACCH 48 (101)
Q Consensus 36 LIAvALliLaCSy 48 (101)
++|+|+++|+|.-
T Consensus 5 I~Aiaf~vLvi~l 17 (90)
T PF06103_consen 5 IAAIAFAVLVIFL 17 (90)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666665543
No 59
>PRK09458 pspB phage shock protein B; Provisional
Probab=37.80 E-value=41 Score=22.72 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy~k~~ 52 (101)
++|.+.-+++++|-||.+=|..-|+...
T Consensus 3 ~~fl~~PliiF~ifVaPiWL~LHY~sk~ 30 (75)
T PRK09458 3 ALFLAIPLTIFVLFVAPIWLWLHYRSKR 30 (75)
T ss_pred chHHHHhHHHHHHHHHHHHHHHhhcccc
Confidence 6788888899999999999988886543
No 60
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=37.73 E-value=47 Score=25.68 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 034219 33 VFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 33 MlgLIAvALliLaCSy~k~ 51 (101)
.+-+|-+-+||.-||+||.
T Consensus 39 vVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 39 VVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 3334556677778998875
No 61
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=37.35 E-value=1.4e+02 Score=21.74 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=15.5
Q ss_pred CCCCceEEEecCCCCCceec
Q 034219 75 ALEPKIVVIMAGDDHPTRIA 94 (101)
Q Consensus 75 ~~e~kivVIMAGd~~PTfLA 94 (101)
+.+|.|+|=++|+..-.||-
T Consensus 71 ~l~~~fvvNl~~~~~~ryLk 90 (170)
T PRK05696 71 PMPRPFVFNVPGNGRDRLVQ 90 (170)
T ss_pred ecCCCEEEEecCCCCceEEE
Confidence 44567999999888888874
No 62
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=36.59 E-value=46 Score=24.98 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy~k 50 (101)
.||.|+++|.|=++-|+-||.=-|-.
T Consensus 102 ~LFigf~l~fggl~~s~~vli~~yv~ 127 (166)
T PF05255_consen 102 WLFIGFALSFGGLAGSVWVLILKYVV 127 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Confidence 69999999999999999999866644
No 63
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.58 E-value=63 Score=20.85 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034219 26 MFGGLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 26 LFgGLa~MlgLIAvALliLaCSy~k~~ 52 (101)
.+-|.+--.|+|++.|+.++|-|+-..
T Consensus 5 ~~~~~a~a~~t~~~~l~fiavi~~ayr 31 (60)
T COG4736 5 MMRGFADAWGTIAFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466778888999999999988886543
No 64
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=36.57 E-value=52 Score=23.08 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC
Q 034219 27 FGGLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 27 FgGLa~MlgLIAvALliLaCSy~k~~ 52 (101)
..++.++|-||.++.-|++|-..|..
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq 28 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQ 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555566677777888888776553
No 65
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=35.31 E-value=90 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHHH----HHHHHHHHHhhh
Q 034219 22 PLPYMFGGLLLVFGV----IAVALMFLACCH 48 (101)
Q Consensus 22 PvPYLFgGLa~MlgL----IAvALliLaCSy 48 (101)
=.||+|.|+.+.--+ +++|++-.+|.+
T Consensus 206 ~~~ff~lGFvl~ayl~l~~l~iAiig~~iA~ 236 (262)
T PRK15065 206 LMPFFYLGFVLAAFTNLNLIALGVIGVVLAL 236 (262)
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 479999999877544 777776666655
No 66
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=35.07 E-value=50 Score=24.33 Aligned_cols=23 Identities=35% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 034219 29 GLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 29 GLa~MlgLIAvALliLaCSy~k~~ 52 (101)
.++..+|+.|+.++ +.|++|+..
T Consensus 57 ~lgL~~g~Pall~~-~l~~~R~~~ 79 (149)
T PF11143_consen 57 YLGLAAGLPALLLM-LLSGRRHRS 79 (149)
T ss_pred HHHHHHhHHHHHHH-HHHccCCCC
Confidence 46677899999888 888887743
No 67
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=34.69 E-value=65 Score=22.36 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCC
Q 034219 33 VFGVIAVALMFLACCHDKSSITGP 56 (101)
Q Consensus 33 MlgLIAvALliLaCSy~k~~s~~~ 56 (101)
|-.||++-.+||.--..++||+++
T Consensus 28 MtILivLVIIiLlImlfqsSS~~~ 51 (85)
T PF10717_consen 28 MTILIVLVIIILLIMLFQSSSNGN 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Confidence 334444443444333445555543
No 68
>PHA00736 hypothetical protein
Probab=34.36 E-value=37 Score=22.99 Aligned_cols=14 Identities=43% Similarity=0.887 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 034219 26 MFGGLLLVFGVIAV 39 (101)
Q Consensus 26 LFgGLa~MlgLIAv 39 (101)
||-|+++++||||=
T Consensus 57 lfwgi~vifgliag 70 (79)
T PHA00736 57 LFWGITVIFGLIAG 70 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 78899999999974
No 69
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=34.31 E-value=67 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 034219 26 MFGGLLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 26 LFgGLa~MlgLIAvALliLaCSy~k 50 (101)
.|..+++++.++|+-+.++.|.+++
T Consensus 73 ~~~~l~~~~~~~a~~~~~~~~~~~~ 97 (172)
T PF13903_consen 73 AFLILGLLLLLFAFVFALIGFCKRS 97 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4555666666666666655555544
No 70
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=33.22 E-value=1.5e+02 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=13.0
Q ss_pred cccccccCChhHHHHHHHHHHHHHHH
Q 034219 14 AGLVQWNSPLPYMFGGLLLVFGVIAV 39 (101)
Q Consensus 14 ~~~~~W~SPvPYLFgGLa~MlgLIAv 39 (101)
++.+.|. +-=++++|+++++||-+
T Consensus 61 ~~~s~~~--l~qmi~aL~~VI~Liy~ 84 (219)
T PRK13415 61 SSVSAFD--FVKLIGATLFVIFLIYA 84 (219)
T ss_pred CCccHHH--HHHHHHHHHHHHHHHHH
Confidence 5556665 34466666555544443
No 71
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=32.33 E-value=49 Score=22.72 Aligned_cols=20 Identities=40% Similarity=0.217 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhcccC
Q 034219 33 VFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 33 MlgLIAvALliLaCSy~k~~ 52 (101)
.+|++++.++|++.-+||.-
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777778763
No 72
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=32.30 E-value=93 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.339 Sum_probs=18.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 034219 22 PLPYMFGGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 22 PvPYLFgGLa~MlgLIAvALliLaCSy 48 (101)
.-+|...|+.+++.++.+++.-+.+-|
T Consensus 76 ~~~~~~~G~~a~~~l~~l~~tS~~~~R 102 (125)
T PF01794_consen 76 TGPYNLTGIIALLLLLILAVTSFPWIR 102 (125)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777776666666
No 73
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=32.20 E-value=1.8e+02 Score=23.19 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034219 23 LPYMFGGLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 23 vPYLFgGLa~MlgLIAvALliLaCSy~k~~ 52 (101)
.+.+|.||.++ ++|+.+.|..|+..
T Consensus 12 ~~~~~~~~~~~-----~~~~~~~~~~~~~~ 36 (333)
T PTZ00260 12 RMLIVLGLVVG-----LALLFYPYISWPDD 36 (333)
T ss_pred HHHHHHHHHHH-----HHHHHHHHhhhhhh
Confidence 44556665444 55666666677654
No 74
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=32.14 E-value=60 Score=25.97 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=7.7
Q ss_pred CceEEEecCCCC
Q 034219 78 PKIVVIMAGDDH 89 (101)
Q Consensus 78 ~kivVIMAGd~~ 89 (101)
+.|+-|.+||++
T Consensus 62 ~e~~~L~~~~~~ 73 (310)
T PF12048_consen 62 DEVQWLQAGEER 73 (310)
T ss_pred hhcEEeecCCEE
Confidence 566677776663
No 75
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=31.77 E-value=95 Score=19.81 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=14.1
Q ss_pred cCChhHHHHHHHHHHHHHH
Q 034219 20 NSPLPYMFGGLLLVFGVIA 38 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIA 38 (101)
-+|-.-++..+++++||+.
T Consensus 54 ~~P~~~lil~l~~~~Gl~l 72 (82)
T PF13807_consen 54 VSPKRALILALGLFLGLIL 72 (82)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 3566778888888888854
No 76
>PF15240 Pro-rich: Proline-rich
Probab=30.29 E-value=36 Score=26.33 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 034219 33 VFGVIAVALMFLA 45 (101)
Q Consensus 33 MlgLIAvALliLa 45 (101)
.|.|..||||.|.
T Consensus 2 LlVLLSvALLALS 14 (179)
T PF15240_consen 2 LLVLLSVALLALS 14 (179)
T ss_pred hhHHHHHHHHHhh
Confidence 3567889999885
No 77
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.29 E-value=1.2e+02 Score=27.93 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034219 24 PYMFGGLLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 24 PYLFgGLa~MlgLIAvALliLaCSy~k 50 (101)
=|.|.||.+++.++++.++|+..--||
T Consensus 673 r~~y~gl~~~~~~~~~i~~i~~~~v~r 699 (735)
T KOG3626|consen 673 RYRYLGLHIILKVIALILLIIDLYVWR 699 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999988888655555
No 78
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=30.13 E-value=66 Score=20.06 Aligned_cols=21 Identities=19% Similarity=0.566 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 034219 30 LLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k 50 (101)
+++|+.+++.++.+-+|---+
T Consensus 6 i~~i~~~l~~~~~l~~CnTv~ 26 (48)
T PRK10081 6 IAAIFSVLVLSTVLTACNTTR 26 (48)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 567777788888788895443
No 79
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=29.77 E-value=42 Score=23.12 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034219 27 FGGLLLVFGVIAVALMFLA 45 (101)
Q Consensus 27 FgGLa~MlgLIAvALliLa 45 (101)
.=|.|+|+|+|+-=|=||-
T Consensus 43 ~~~VasMVG~i~SrlGIL~ 61 (83)
T PF10826_consen 43 YRGVASMVGLIHSRLGILS 61 (83)
T ss_pred HHHHHHHHHHHHHhhhhee
Confidence 3488999999998888884
No 80
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=29.71 E-value=58 Score=23.29 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 034219 33 VFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 33 MlgLIAvALliLaCSy~k~ 51 (101)
.++-|++-|+||+|.-+|+
T Consensus 6 ~~~aiG~lL~IL~CAL~~n 24 (120)
T PF04133_consen 6 FFLAIGFLLVILSCALYKN 24 (120)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3456788899999988776
No 81
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=29.27 E-value=86 Score=24.59 Aligned_cols=29 Identities=38% Similarity=0.474 Sum_probs=16.7
Q ss_pred hhHHHH-----HHHHHHHHHHHHHHHHHhhhccc
Q 034219 23 LPYMFG-----GLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 23 vPYLFg-----GLa~MlgLIAvALliLaCSy~k~ 51 (101)
+||+|. ++...+++-.++|+++-+.+-+.
T Consensus 173 lPy~~~~~~~~a~~~si~l~~~aL~ilG~~~s~~ 206 (241)
T cd02435 173 LPYFFVSTVGEALLLSVIVTLVALFVFGYVKTWF 206 (241)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478773 45555555566666665555443
No 82
>PF15471 TMEM171: Transmembrane protein family 171
Probab=29.05 E-value=96 Score=26.04 Aligned_cols=25 Identities=8% Similarity=0.303 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCC
Q 034219 31 LLVFGVIAVALMFLACCHDKSSITG 55 (101)
Q Consensus 31 a~MlgLIAvALliLaCSy~k~~s~~ 55 (101)
+..+.|+.+-..+.||-.||...|.
T Consensus 166 GPlIVl~GLCFFVVAHvKKr~nln~ 190 (319)
T PF15471_consen 166 GPLIVLVGLCFFVVAHVKKRNNLNG 190 (319)
T ss_pred hhHHHHHhhhhhheeeeeeccCCCc
Confidence 3445566667778888888875543
No 83
>PLN00090 photosystem II reaction center M protein; Provisional
Probab=28.86 E-value=82 Score=22.71 Aligned_cols=13 Identities=31% Similarity=0.115 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 034219 33 VFGVIAVALMFLA 45 (101)
Q Consensus 33 MlgLIAvALliLa 45 (101)
.+|+||.+|.||.
T Consensus 75 iLafIATaLFIlI 87 (113)
T PLN00090 75 FGAYLAVALGTFL 87 (113)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777776653
No 84
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=28.78 E-value=1.1e+02 Score=26.31 Aligned_cols=17 Identities=6% Similarity=0.044 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEecCCC
Q 034219 72 PPAALEPKIVVIMAGDD 88 (101)
Q Consensus 72 ~~~~~e~kivVIMAGd~ 88 (101)
.++-.+|+|||+=.||+
T Consensus 65 ~sLG~RERVVvVeV~d~ 81 (379)
T PRK12430 65 LSLGSNESIIIVEIKQL 81 (379)
T ss_pred cccCCcceEEEEEECCE
Confidence 35566789999888876
No 85
>PLN00085 photosystem II reaction center protein M (PsbM); Provisional
Probab=28.67 E-value=49 Score=24.80 Aligned_cols=15 Identities=40% Similarity=0.642 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhh
Q 034219 33 VFGVIAVALMFLACC 47 (101)
Q Consensus 33 MlgLIAvALliLaCS 47 (101)
.||+||.+|.||.=+
T Consensus 82 iLgfIAtaLFIlIPT 96 (149)
T PLN00085 82 ILGVIATALFIIIPT 96 (149)
T ss_pred HHHHHHHHHHHHHHH
Confidence 588999999887533
No 86
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=28.44 E-value=2.1e+02 Score=20.72 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=13.1
Q ss_pred CCCCceEEEe-cCCCCCceec
Q 034219 75 ALEPKIVVIM-AGDDHPTRIA 94 (101)
Q Consensus 75 ~~e~kivVIM-AGd~~PTfLA 94 (101)
+.| .|+|=+ .+++..+||-
T Consensus 63 ~L~-~f~VNL~~~~~~~rylk 82 (162)
T PRK07021 63 PLE-TFTVNLQPDDDADRVLY 82 (162)
T ss_pred ecC-CEEEEcCCCCCCceEEE
Confidence 445 488888 5666788874
No 87
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=28.39 E-value=78 Score=22.99 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 034219 25 YMFGGLLLVFGVIAV 39 (101)
Q Consensus 25 YLFgGLa~MlgLIAv 39 (101)
=++++|.++++||.+
T Consensus 20 qv~~~L~lVl~lI~~ 34 (124)
T PRK11486 20 QVSGALIGIIALILA 34 (124)
T ss_pred HHHHHHHHHHHHHHH
Confidence 366777666665543
No 88
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.98 E-value=53 Score=25.33 Aligned_cols=17 Identities=29% Similarity=0.821 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034219 25 YMFGGLLLVFGVIAVALM 42 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALl 42 (101)
|+.||+.+.+||| +.|+
T Consensus 174 f~~Gg~v~~~Gll-lGli 190 (206)
T PRK10884 174 FMYGGGVAGIGLL-LGLL 190 (206)
T ss_pred HHHchHHHHHHHH-HHHH
Confidence 6789999999998 4444
No 89
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=27.98 E-value=77 Score=29.71 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 034219 24 PYMFGGLLLVFGVIAVALMFLAC 46 (101)
Q Consensus 24 PYLFgGLa~MlgLIAvALliLaC 46 (101)
=||.+-|+.|+.|+-+-|-+|.|
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~ 295 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLC 295 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555555555
No 90
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=27.88 E-value=20 Score=26.21 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccc
Q 034219 34 FGVIAVALMFLACCHDKS 51 (101)
Q Consensus 34 lgLIAvALliLaCSy~k~ 51 (101)
|.+|-..||++-|-|.|.
T Consensus 32 L~VILgiLLliGCWYckR 49 (118)
T PF14991_consen 32 LIVILGILLLIGCWYCKR 49 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHhheeeee
Confidence 334444567777777443
No 91
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=27.87 E-value=90 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy~k 50 (101)
++||-+++++|...++++...|-+||
T Consensus 302 ~~fG~~G~il~~pi~~~~~~~~~~~~ 327 (327)
T PF01594_consen 302 YLFGFIGLILAPPILAVIKAIFEEYR 327 (327)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 57888889999988888888887765
No 92
>PRK11246 hypothetical protein; Provisional
Probab=27.74 E-value=99 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHhhhcccC
Q 034219 23 LPYMFGGLLLVFGV-IAVALMFLACCHDKSS 52 (101)
Q Consensus 23 vPYLFgGLa~MlgL-IAvALliLaCSy~k~~ 52 (101)
.-|++..+|+..|+ ++..|+-+-=++|+.+
T Consensus 164 ~~r~Mll~al~iG~lL~~~l~~~~~~~~~~~ 194 (218)
T PRK11246 164 ILRLMLLLALAIGIVLTRTLLQGKRTRWQQS 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence 34577777777776 5667777767777765
No 93
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=27.51 E-value=77 Score=25.63 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=23.6
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219 16 LVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 16 ~~~W~SPvPYLFgGLa~MlgLIAvALliLaCSy~k~ 51 (101)
|..|++..-+++|-+|+.+-++.+.| ||+++.
T Consensus 94 fgEW~~~~~~~~G~~Al~liiiGv~l----ts~~~~ 125 (269)
T PF06800_consen 94 FGEWTTTTQKIIGFLALVLIIIGVIL----TSYQDK 125 (269)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHH----hccccc
Confidence 68899999999888887777666654 555543
No 94
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=27.42 E-value=46 Score=26.03 Aligned_cols=14 Identities=50% Similarity=0.804 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhh
Q 034219 34 FGVIAVALMFLACC 47 (101)
Q Consensus 34 lgLIAvALliLaCS 47 (101)
-+||++||..|+|-
T Consensus 85 t~lI~~alAfl~Cv 98 (186)
T PF06387_consen 85 TRLIAFALAFLGCV 98 (186)
T ss_pred hHHHHHHHHHHHHH
Confidence 36788888888887
No 95
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=27.28 E-value=1e+02 Score=23.98 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=31.8
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219 14 AGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 14 ~~~~~W~SPvPYLFgGLa~MlgLIAvALliLaCSy~k~ 51 (101)
|.++.=+-|.|.+++.++++-++.++.-+.+.+.|||.
T Consensus 38 gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~ 75 (295)
T PF06814_consen 38 GYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKS 75 (295)
T ss_pred CCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566678899999999999999988888888888875
No 96
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=26.68 E-value=21 Score=29.15 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccc
Q 034219 39 VALMFLACCHDKS 51 (101)
Q Consensus 39 vALliLaCSy~k~ 51 (101)
||.+|.+|.|||.
T Consensus 161 IA~iIa~icyrrk 173 (290)
T PF05454_consen 161 IAGIIACICYRRK 173 (290)
T ss_dssp -------------
T ss_pred HHHHHHHHhhhhh
Confidence 3445555555443
No 97
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.39 E-value=1.1e+02 Score=25.26 Aligned_cols=30 Identities=13% Similarity=-0.103 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219 22 PLPYMFGGLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 22 PvPYLFgGLa~MlgLIAvALliLaCSy~k~ 51 (101)
|-+-++.++++++|++.-..+++.+.++..
T Consensus 411 P~~~~~l~~g~~~Gl~lg~~~~~l~e~ld~ 440 (498)
T TIGR03007 411 PNRPLLMLAGLLGGLGAGIGLAFLLSQLRP 440 (498)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666688888899998877777887877654
No 98
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=26.15 E-value=1.9e+02 Score=21.31 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 034219 29 GLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 29 GLa~MlgLIAvALliLaCSy~k~~ 52 (101)
-|-+|++|+.+++.+.+.+++...
T Consensus 3 ~l~a~~~Lvl~~~~lva~a~~Tg~ 26 (135)
T TIGR03054 3 LLIAMLGLVLLTFALVAFAVLTGV 26 (135)
T ss_pred HHHHHHHHHHHHHHHhheeeecCC
Confidence 467899999999999999998843
No 99
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=26.08 E-value=85 Score=16.65 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 034219 36 VIAVALMFLAC 46 (101)
Q Consensus 36 LIAvALliLaC 46 (101)
|+.+.|+.++.
T Consensus 10 l~~~gl~~l~~ 20 (25)
T PF07589_consen 10 LLGLGLLGLAF 20 (25)
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 100
>TIGR03363 VI_chp_8 type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=26.00 E-value=33 Score=28.03 Aligned_cols=8 Identities=50% Similarity=1.331 Sum_probs=7.1
Q ss_pred cCChhHHH
Q 034219 20 NSPLPYMF 27 (101)
Q Consensus 20 ~SPvPYLF 27 (101)
|||||||.
T Consensus 313 hSPvp~Ll 320 (353)
T TIGR03363 313 HSPVPYLI 320 (353)
T ss_pred CCcHHHHH
Confidence 89999986
No 101
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=25.97 E-value=59 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 034219 29 GLLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 29 GLa~MlgLIAvALliLaCSy~k~~ 52 (101)
..+..++||++ |+.|+|-||+..
T Consensus 302 ~v~~~~vli~v-l~~~~~~~~~~~ 324 (361)
T PF12259_consen 302 AVCGAIVLIIV-LISLAWLYRTFR 324 (361)
T ss_pred ehhHHHHHHHH-HHHHHhheeehH
Confidence 34455666655 667777776653
No 102
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=25.91 E-value=1.4e+02 Score=23.75 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=23.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034219 19 WNSPLPYMFGGLLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 19 W~SPvPYLFgGLa~MlgLIAvALliLaCSy~k 50 (101)
.+--..++|..+++...++++.|+++-+.+-|
T Consensus 241 kn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r 272 (278)
T PF03381_consen 241 KNYFLGIAYLVVGGICLVLAIIFLIIHYFKPR 272 (278)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34446777888888888888888888776544
No 103
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=25.57 E-value=1.3e+02 Score=21.32 Aligned_cols=29 Identities=38% Similarity=0.567 Sum_probs=15.0
Q ss_pred hhHHHHH---HHHHHHH---HHHHHHHHHhhhccc
Q 034219 23 LPYMFGG---LLLVFGV---IAVALMFLACCHDKS 51 (101)
Q Consensus 23 vPYLFgG---La~MlgL---IAvALliLaCSy~k~ 51 (101)
.||+|.. ++..+.+ ..++|+++.+...|.
T Consensus 79 lp~~~~~~~~~a~~~si~~~~~~~l~~~g~~~~~~ 113 (143)
T cd01059 79 LPYLLLPAGSLALAVSVALVVALALFLLGAFVAKL 113 (143)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4787763 3444433 344555555555554
No 104
>COG4885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.49 E-value=59 Score=27.14 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 034219 29 GLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 29 GLa~MlgLIAvALliLaCSy~k~ 51 (101)
|+...++|||+++.-+|--+|++
T Consensus 289 GF~~~~aL~Av~~~~~a~~rRrs 311 (312)
T COG4885 289 GFEVVFALMAVAGVALARKRRRS 311 (312)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhc
Confidence 67788899999988888777664
No 105
>CHL00066 psbH photosystem II protein H
Probab=25.43 E-value=1e+02 Score=20.85 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 034219 30 LLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k 50 (101)
+++.|+|+||.|+|+.=-|..
T Consensus 43 Mgv~m~lf~vfl~iiLeiyNs 63 (73)
T CHL00066 43 MGVAMALFAVFLSIILEIYNS 63 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 466788899999888765543
No 106
>PRK13792 lysozyme inhibitor; Provisional
Probab=25.43 E-value=39 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 034219 31 LLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 31 a~MlgLIAvALliLaCSy~k~ 51 (101)
++++.|+.+++|+-+||.-..
T Consensus 4 ~l~~ll~~~~~lLsaCs~~~~ 24 (127)
T PRK13792 4 ALWLLLAAVPVVLVACGGSDD 24 (127)
T ss_pred HHHHHHHHHHhheecccCCCC
Confidence 356777888888999998654
No 107
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.40 E-value=20 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 034219 29 GLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 29 GLa~MlgLIAvALliLaCSy~k~ 51 (101)
|++.-+.|++++|+.+.|-++|.
T Consensus 57 GVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 57 GVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred cccHHHHHHHHHhheeEEEeccc
Confidence 44443334445555555655554
No 108
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=25.36 E-value=1.4e+02 Score=23.03 Aligned_cols=25 Identities=8% Similarity=0.343 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 034219 26 MFGGLLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 26 LFgGLa~MlgLIAvALliLaCSy~k 50 (101)
-+.=.|-.|-+|.+.++.|-|..+.
T Consensus 154 ~Llv~AW~L~iinii~lllp~~~~~ 178 (192)
T PTZ00201 154 ALLVVAWILDILNIIFLLLPCTVPA 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCC
Confidence 3444567788999999999994433
No 109
>TIGR03501 gamma_C_targ gammaproteobacterial enzyme C-terminal transmembrane domain. This homology domain, largely restricted to a subset of the gamma proteobacteria that excludes the enterobacteria, is found at the extreme carboxyl-terminus of a diverse set of proteins, most of which are enzymes with conventional signal sequences and with hydrolytic activities: nucleases, proteases, agarases, etc. Species that have this domain at all typically have from two to fifteen proteins tagged with this domain at the C-terminus. The agarase AgaA from Vibro sp. strain JT0107 is secreted into the medium, while the same protein heterologously expressed in E. coli is retained in the cell fraction. This suggests cleavage and release in species with this domain. Both this suggestion, and the chemical structure of the domain (motif, hydrophobic predicted transmembrane helix, cluster of basic residues) closely parallels that of the LPXTG/sortase system and the PEP-CTERM/exosortase(EpsH) system.
Probab=24.72 E-value=80 Score=17.18 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhcc
Q 034219 34 FGVIAVALMFLACCHDK 50 (101)
Q Consensus 34 lgLIAvALliLaCSy~k 50 (101)
||..++.+|.+..-+||
T Consensus 5 lGwl~LllL~~~~~rRr 21 (26)
T TIGR03501 5 LGWLSLLLLLLLGLRRR 21 (26)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566666655554444
No 110
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=24.40 E-value=71 Score=23.20 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 034219 32 LVFGVIAVALMFLACCH 48 (101)
Q Consensus 32 ~MlgLIAvALliLaCSy 48 (101)
+++++|++||+...-+-
T Consensus 10 lLi~vIglAL~aFIv~d 26 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGD 26 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677888887775554
No 111
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.33 E-value=82 Score=29.33 Aligned_cols=25 Identities=20% Similarity=0.289 Sum_probs=21.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHH
Q 034219 20 NSPLPYMFGGLLLVFGVIAVALMFL 44 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIAvALliL 44 (101)
++-.=|+|--+.-|||+.+|||||=
T Consensus 425 ~~~~E~Vf~~~~w~mGVFvFslliG 449 (815)
T KOG0499|consen 425 QTLFEIVFQLLNWFMGVFVFSLLIG 449 (815)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445699999999999999999984
No 112
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=24.16 E-value=63 Score=24.20 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhcccC
Q 034219 35 GVIAVALMFLACCHDKSS 52 (101)
Q Consensus 35 gLIAvALliLaCSy~k~~ 52 (101)
.+|++.|++.+|+..+..
T Consensus 5 ~~l~l~lll~~C~~~~~~ 22 (216)
T PF11153_consen 5 LLLLLLLLLTGCSTNPNE 22 (216)
T ss_pred HHHHHHHHHHhhcCCCcc
Confidence 345588899999987754
No 113
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=24.13 E-value=37 Score=24.75 Aligned_cols=7 Identities=29% Similarity=0.301 Sum_probs=3.8
Q ss_pred ccCChhH
Q 034219 19 WNSPLPY 25 (101)
Q Consensus 19 W~SPvPY 25 (101)
-++|.-|
T Consensus 69 ~~~p~~~ 75 (179)
T PF13908_consen 69 SYDPPIY 75 (179)
T ss_pred ccCcccc
Confidence 3456555
No 114
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=23.74 E-value=60 Score=24.04 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.9
Q ss_pred CCCCCCceEEEecCC
Q 034219 73 PAALEPKIVVIMAGD 87 (101)
Q Consensus 73 ~~~~e~kivVIMAGd 87 (101)
-+|-+.|||||+.||
T Consensus 45 g~DVkGKiVvvl~~~ 59 (157)
T cd04821 45 GLDVKGKTVVILVND 59 (157)
T ss_pred CCCcCCcEEEEEcCC
Confidence 458899999999886
No 115
>PF04976 DmsC: DMSO reductase anchor subunit (DmsC); InterPro: IPR007059 The terminal electron transfer enzyme dimethyl sulphoxide reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC) []. This family represents DmsC.; GO: 0019645 anaerobic electron transport chain, 0016021 integral to membrane
Probab=23.61 E-value=1.2e+02 Score=23.89 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=19.1
Q ss_pred ccccccCChhH-HHHHHHHHHHHHHHHH
Q 034219 15 GLVQWNSPLPY-MFGGLLLVFGVIAVAL 41 (101)
Q Consensus 15 ~~~~W~SPvPY-LFgGLa~MlgLIAvAL 41 (101)
....||+|..+ .|.|-++++|....++
T Consensus 141 ~vp~W~~~~T~~~f~~tal~~G~~l~~~ 168 (276)
T PF04976_consen 141 TVPAWNSPWTPISFLGTALLLGAALAAL 168 (276)
T ss_pred chhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 44678888655 7888888888865543
No 116
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=23.51 E-value=96 Score=23.32 Aligned_cols=7 Identities=29% Similarity=-0.021 Sum_probs=4.6
Q ss_pred ccccccc
Q 034219 14 AGLVQWN 20 (101)
Q Consensus 14 ~~~~~W~ 20 (101)
..+|.|+
T Consensus 177 ~~~w~pn 183 (209)
T PF11353_consen 177 ASFWVPN 183 (209)
T ss_pred EEEEecc
Confidence 4557777
No 117
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=23.46 E-value=50 Score=26.24 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.0
Q ss_pred EEEecCCCCCceeccc
Q 034219 81 VVIMAGDDHPTRIARP 96 (101)
Q Consensus 81 vVIMAGd~~PTfLA~P 96 (101)
|+||+|+.-|+-.+-|
T Consensus 97 V~imPG~~Dp~~~~lP 112 (257)
T cd07387 97 VDLMPGEFDPANHSLP 112 (257)
T ss_pred EEECCCCCCcccccCC
Confidence 7899999999988855
No 118
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=23.19 E-value=76 Score=24.40 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034219 30 LLLVFGVIAVALMFLACC 47 (101)
Q Consensus 30 La~MlgLIAvALliLaCS 47 (101)
+.+.|+||.++|||+.=.
T Consensus 5 ~l~il~l~GvlLli~s~~ 22 (186)
T TIGR02830 5 YLLVLLLIGLLLLIVSSF 22 (186)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 345677888888887643
No 119
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=23.05 E-value=1.7e+02 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHhhhcccC
Q 034219 23 LPYMFGGLLLVFGV-IAVALMFLACCHDKSS 52 (101)
Q Consensus 23 vPYLFgGLa~MlgL-IAvALliLaCSy~k~~ 52 (101)
+-|++..+|+..|+ +|.-|+=+-=++|+.+
T Consensus 164 ~~~~m~l~~~~~g~~l~~~l~~~~~~~~~~~ 194 (562)
T PRK14061 164 ILRLMLLLSLAIGVVLTRTLLQGKRTRWQQS 194 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccC
Confidence 45788888888886 5666666667777765
No 120
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=22.64 E-value=48 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHH--HHHHHHHHHH-Hhhhccc
Q 034219 23 LPYMFGGLLLVF--GVIAVALMFL-ACCHDKS 51 (101)
Q Consensus 23 vPYLFgGLa~Ml--gLIAvALliL-aCSy~k~ 51 (101)
.| +|.+|..+- -|||++++.. .|-.||+
T Consensus 99 ~~-~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 99 YP-TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred ce-EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 35 899999888 4455444443 2333444
No 121
>PHA03231 glycoprotein BALF4; Provisional
Probab=22.51 E-value=74 Score=29.85 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=20.1
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034219 17 VQWNSPLPYMFGGLLLVFGVIAVALMFLACCHD 49 (101)
Q Consensus 17 ~~W~SPvPYLFgGLa~MlgLIAvALliLaCSy~ 49 (101)
+..+-| ||||+.+|.+||+-++++.-.+|
T Consensus 698 sFl~NP----FGg~~iillvia~vv~v~l~~rr 726 (829)
T PHA03231 698 SFLKNP----FGGLAIGLLVIAVLVAVFLAYRR 726 (829)
T ss_pred HHhcCc----hHHHHHHHHHHHHhhhhhHHHHH
Confidence 444445 89999988888877666654443
No 122
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=22.33 E-value=1.3e+02 Score=19.87 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 034219 30 LLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k 50 (101)
.++.|+|+++.|+|+.=-|..
T Consensus 31 Mgv~m~Lf~vFl~iiLeIYNs 51 (64)
T PRK02624 31 MAVFMVLFLVFLLIILQIYNQ 51 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 466788899999888766644
No 123
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=22.29 E-value=75 Score=21.94 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 034219 30 LLLVFGVIAVA 40 (101)
Q Consensus 30 La~MlgLIAvA 40 (101)
|+.+.|+||++
T Consensus 25 l~i~~g~la~~ 35 (94)
T PRK13823 25 LVMFSGLLAGI 35 (94)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 124
>PF04964 Flp_Fap: Flp/Fap pilin component; InterPro: IPR007047 This entry is for the fimbriae associated protein Flp/Fap pilin component.
Probab=21.82 E-value=86 Score=18.64 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 034219 31 LLVFGVIAVALMF 43 (101)
Q Consensus 31 a~MlgLIAvALli 43 (101)
+++.++|+++++.
T Consensus 14 ali~alia~~ii~ 26 (46)
T PF04964_consen 14 ALIAALIAVAIIA 26 (46)
T ss_pred HHHHHHHHHHHHH
Confidence 4567777777663
No 125
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=21.61 E-value=24 Score=27.14 Aligned_cols=17 Identities=41% Similarity=0.983 Sum_probs=12.4
Q ss_pred cccccccCChhHHHHHHH
Q 034219 14 AGLVQWNSPLPYMFGGLL 31 (101)
Q Consensus 14 ~~~~~W~SPvPYLFgGLa 31 (101)
.+||-|-||.- |++||+
T Consensus 90 sgFWgwlsPfa-Ll~gl~ 106 (173)
T PF15470_consen 90 SGFWGWLSPFA-LLGGLA 106 (173)
T ss_pred CCchhhhcHHH-Hhcccc
Confidence 79999999853 455554
No 126
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=21.39 E-value=1.2e+02 Score=22.64 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 034219 28 GGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 28 gGLa~MlgLIAvALliLaCSy 48 (101)
|+.+++.|-++.||+.++|-+
T Consensus 20 GsaaAl~gAlgaaL~~Mv~~l 40 (184)
T PF04961_consen 20 GSAAALSGALGAALGSMVANL 40 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999876
No 127
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=21.16 E-value=96 Score=24.15 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC
Q 034219 30 LLLVFGVIAVALMFLACCHDKSS 52 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k~~ 52 (101)
+...+++|.+.+++.+|+|..+.
T Consensus 4 ~~i~l~vi~il~ll~~~~yN~lv 26 (185)
T COG1704 4 FLIILAVIVILLLLAVGGYNGLV 26 (185)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHH
Confidence 44566677777777799997764
No 128
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.15 E-value=69 Score=17.46 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 034219 29 GLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 29 GLa~MlgLIAvALliLaCSy 48 (101)
|+++++.|. +-|+|.-||+
T Consensus 5 ~FalivVLF-ILLiIvG~s~ 23 (24)
T PF09680_consen 5 GFALIVVLF-ILLIIVGASC 23 (24)
T ss_pred cchhHHHHH-HHHHHhccee
Confidence 455555443 3356667776
No 129
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.09 E-value=1.5e+02 Score=21.15 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=18.9
Q ss_pred ChhHHHHHHHH--HHHHHHHHHHHHHhhhc
Q 034219 22 PLPYMFGGLLL--VFGVIAVALMFLACCHD 49 (101)
Q Consensus 22 PvPYLFgGLa~--MlgLIAvALliLaCSy~ 49 (101)
|.-++++++++ ...+|.++|.|+.|..+
T Consensus 40 ~l~~~~~~w~~~p~~~lig~~l~v~~gg~~ 69 (111)
T TIGR03750 40 LLALLAGPWALIPTGALLGPILVVLIGGKL 69 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33355665554 45678888999999874
No 130
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.01 E-value=1.8e+02 Score=20.63 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034219 23 LPYMFGGLLLVFGVIAVALMFLACCHD 49 (101)
Q Consensus 23 vPYLFgGLa~MlgLIAvALliLaCSy~ 49 (101)
.|+--..||+.|.++...|+++.|--+
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l~~ 65 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLLLF 65 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999998888876544
No 131
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=20.61 E-value=1.4e+02 Score=20.14 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 034219 30 LLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k 50 (101)
.++.|+|+||.|+|+.=-|..
T Consensus 43 Mg~~m~lf~vfl~iileiyNs 63 (73)
T PLN00055 43 MGVAMALFAVFLSIILEIYNS 63 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 456788889998888755543
No 132
>PF07937 DUF1686: Protein of unknown function (DUF1686); InterPro: IPR012468 The members of this family are all hypothetical proteins of unknown function expressed by the eukaryotic parasite Encephalitozoon cuniculi GB-M1. The region in question is approximately 250 amino acids long.
Probab=20.56 E-value=94 Score=24.27 Aligned_cols=18 Identities=17% Similarity=0.384 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 034219 33 VFGVIAVALMFLACCHDK 50 (101)
Q Consensus 33 MlgLIAvALliLaCSy~k 50 (101)
-.|+|.||+++|.++|-+
T Consensus 129 ~~g~Vvfa~lLllv~y~e 146 (185)
T PF07937_consen 129 CVGLVVFAILLLLVSYME 146 (185)
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 368999999999999964
No 133
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=20.42 E-value=1.8e+02 Score=21.29 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhccc
Q 034219 37 IAVALMFLACCHDKS 51 (101)
Q Consensus 37 IAvALliLaCSy~k~ 51 (101)
..++|.++-+.+.|.
T Consensus 131 ~~~~L~~~G~~~~~~ 145 (175)
T cd02437 131 VLAILFILGLVIGKI 145 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455555554
No 134
>PRK12361 hypothetical protein; Provisional
Probab=20.24 E-value=1.4e+02 Score=25.46 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhcc
Q 034219 37 IAVALMFLACCHDK 50 (101)
Q Consensus 37 IAvALliLaCSy~k 50 (101)
.|++|++.++-|+-
T Consensus 37 ~~~~~~~v~~~y~~ 50 (547)
T PRK12361 37 ISLSLFLVGSAYWF 50 (547)
T ss_pred HHHHHHHHHHHHHh
Confidence 67788888888854
Done!