Query 034219
Match_columns 101
No_of_seqs 95 out of 97
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 18:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 87.7 1.7 6E-05 26.7 5.6 33 21-53 8-43 (54)
2 2jwa_A Receptor tyrosine-prote 71.6 6.8 0.00023 23.1 4.1 32 20-51 8-39 (44)
3 2knc_B Integrin beta-3; transm 69.4 4.8 0.00017 25.9 3.4 30 19-48 4-33 (79)
4 4ds7_E Spindle POLE BODY compo 69.3 1.8 6.2E-05 26.9 1.2 15 37-51 13-27 (55)
5 2jo1_A Phospholemman; FXYD1, N 65.7 5.9 0.0002 25.8 3.2 28 19-46 5-37 (72)
6 1afo_A Glycophorin A; integral 59.7 8.6 0.00029 22.5 2.8 23 27-49 14-36 (40)
7 2l8s_A Integrin alpha-1; trans 58.8 21 0.00071 21.8 4.7 31 22-52 6-39 (54)
8 2yew_B E1 envelope glycoprotei 56.4 4.5 0.00015 33.7 1.7 27 14-47 393-419 (427)
9 2k1a_A Integrin alpha-IIB; sin 56.2 16 0.00054 21.2 3.6 30 21-50 6-38 (42)
10 2zxe_G FXYD10, phospholemman-l 55.1 10 0.00035 24.7 2.9 34 18-51 7-45 (74)
11 2k9j_B Integrin beta-3; transm 52.3 25 0.00087 20.1 4.1 27 20-46 4-30 (43)
12 2jp3_A FXYD domain-containing 48.1 21 0.00073 22.8 3.6 32 17-48 4-40 (67)
13 2k9y_A Ephrin type-A receptor 45.3 25 0.00087 19.1 3.2 19 20-40 9-27 (41)
14 2lk9_A Bone marrow stromal ant 43.7 28 0.00095 19.7 3.2 25 26-50 5-29 (35)
15 3arc_M Photosystem II reaction 42.4 12 0.00041 21.3 1.5 11 34-44 6-16 (36)
16 1rkl_A Dolichyl-diphosphooligo 42.3 21 0.00073 20.2 2.6 16 29-44 9-24 (36)
17 2vpz_C Hypothetical membrane s 40.7 28 0.00095 25.7 3.8 23 15-37 140-162 (253)
18 2lat_A Dolichyl-diphosphooligo 40.2 32 0.0011 19.6 3.1 18 27-44 7-24 (37)
19 3j0f_E E1 envelope glycoprotei 36.7 15 0.00052 30.7 1.9 29 14-48 404-432 (439)
20 2l2t_A Receptor tyrosine-prote 35.3 67 0.0023 18.7 4.7 31 20-50 6-37 (44)
21 2ks1_B Epidermal growth factor 34.6 41 0.0014 19.5 3.1 30 21-50 8-38 (44)
22 3j0c_A E1 envelope glycoprotei 32.3 16 0.00055 30.5 1.4 28 14-47 404-431 (442)
23 1zza_A Stannin, AG8_1; helix, 30.3 1.2E+02 0.0041 20.0 5.9 18 20-40 8-25 (90)
24 2jo1_A Phospholemman; FXYD1, N 30.2 1.1E+02 0.0038 19.7 5.2 29 25-53 21-49 (72)
25 2qzu_A Putative sulfatase YIDJ 28.2 44 0.0015 26.0 3.2 17 77-93 27-43 (491)
26 1iij_A ERBB-2 receptor protein 26.0 18 0.0006 20.4 0.4 31 20-50 4-34 (35)
27 3u7d_B Protein HEG homolog 1; 23.6 23 0.0008 18.7 0.6 14 82-95 5-18 (26)
28 2kog_A Vesicle-associated memb 23.2 80 0.0027 21.3 3.4 27 19-47 93-119 (119)
29 1cd1_A CD1, MCD1D.1; immunolog 22.9 19 0.00065 27.2 0.1 6 47-52 304-309 (315)
30 2lp1_A C99; alzheimer'S D memb 28.3 18 0.00062 25.5 0.0 8 85-92 85-92 (122)
31 2bsc_A F17A-G adhesin; bacteri 22.5 25 0.00085 26.1 0.7 15 77-91 78-92 (177)
32 3arc_H Photosystem II reaction 22.3 88 0.003 19.8 3.2 22 30-51 30-51 (65)
33 2klu_A T-cell surface glycopro 22.3 1.4E+02 0.0048 19.1 4.2 23 28-50 12-35 (70)
34 1q55_A EP-cadherin, C-cadherin 20.9 21 0.00071 31.1 0.0 27 23-49 704-730 (880)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=87.66 E-value=1.7 Score=26.65 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH---HhhhcccCC
Q 034219 21 SPLPYMFGGLLLVFGVIAVALMFL---ACCHDKSSI 53 (101)
Q Consensus 21 SPvPYLFgGLa~MlgLIAvALliL---aCSy~k~~s 53 (101)
+++|+-..-++++.||+-++|+++ -|-+.|...
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 356666666677777777776665 566666543
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=71.59 E-value=6.8 Score=23.08 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=23.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219 20 NSPLPYMFGGLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIAvALliLaCSy~k~ 51 (101)
.||+|-.-+|..-.+.++.++|.++.+=+||.
T Consensus 8 ~~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 8 ASPLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 48899888888886666666666666666664
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=69.43 E-value=4.8 Score=25.88 Aligned_cols=30 Identities=10% Similarity=-0.019 Sum_probs=19.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 034219 19 WNSPLPYMFGGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 19 W~SPvPYLFgGLa~MlgLIAvALliLaCSy 48 (101)
+-.|.+.+...++++.|++.+.|++|.|-+
T Consensus 4 Cp~~~n~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 4 GSKGPDILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666777777777777766554
No 4
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=69.28 E-value=1.8 Score=26.90 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhccc
Q 034219 37 IAVALMFLACCHDKS 51 (101)
Q Consensus 37 IAvALliLaCSy~k~ 51 (101)
=+|||++|+|-+-|.
T Consensus 13 KTVAL~VlaciRMk~ 27 (55)
T 4ds7_E 13 KTVALLVLACVRMKR 27 (55)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 379999999998664
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=65.66 E-value=5.9 Score=25.76 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=15.9
Q ss_pred ccCChhH-----HHHHHHHHHHHHHHHHHHHHh
Q 034219 19 WNSPLPY-----MFGGLLLVFGVIAVALMFLAC 46 (101)
Q Consensus 19 W~SPvPY-----LFgGLa~MlgLIAvALliLaC 46 (101)
+.+|.=| =.|||.+-..|.++.++||.+
T Consensus 5 E~dPF~YDY~tLRiGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 5 EHDPFTYDYQSLQIGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp HHSGGGCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccchHHhhccchHHHHHHHHHHHHHHHc
Confidence 4455555 356666666666666666643
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=59.66 E-value=8.6 Score=22.46 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 034219 27 FGGLLLVFGVIAVALMFLACCHD 49 (101)
Q Consensus 27 FgGLa~MlgLIAvALliLaCSy~ 49 (101)
..=|++|-|+|..-|+|--|-+|
T Consensus 14 lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999888764
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=58.82 E-value=21 Score=21.83 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH---HhhhcccC
Q 034219 22 PLPYMFGGLLLVFGVIAVALMFL---ACCHDKSS 52 (101)
Q Consensus 22 PvPYLFgGLa~MlgLIAvALliL---aCSy~k~~ 52 (101)
++|.-..-++++.||+-++|+++ -|-+.|..
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 35555555666777777776665 46666644
No 8
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=56.36 E-value=4.5 Score=33.69 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=19.5
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 034219 14 AGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACC 47 (101)
Q Consensus 14 ~~~~~W~SPvPYLFgGLa~MlgLIAvALliLaCS 47 (101)
+.-|.|-. |+||.+ .||+++|+||+|+
T Consensus 393 ~Taw~W~~----l~gG~~---~~~~i~~~i~~~v 419 (427)
T 2yew_B 393 TTAWQWLA----TTSGPL---TILVVAIIVVVVV 419 (427)
T ss_dssp HHHHHHHG----GGHHHH---HHHHHHHHHHHHH
T ss_pred hhhHHHHH----HhcCch---HHHHHHHHHHHHh
Confidence 44588864 999998 4667777777765
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=56.21 E-value=16 Score=21.17 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH---Hhhhcc
Q 034219 21 SPLPYMFGGLLLVFGVIAVALMFL---ACCHDK 50 (101)
Q Consensus 21 SPvPYLFgGLa~MlgLIAvALliL---aCSy~k 50 (101)
.++|.-..-++++.||+-++|+++ -|-..|
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 456766666777778887777665 355444
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=55.10 E-value=10 Score=24.73 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=21.4
Q ss_pred cccCChhH-----HHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219 18 QWNSPLPY-----MFGGLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 18 ~W~SPvPY-----LFgGLa~MlgLIAvALliLaCSy~k~ 51 (101)
.+.+|.=| =.|||.+-..|.++.++||.+-+.|-
T Consensus 7 ~~~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 7 DNDERFTYDYYRLRVVGLIVAAVLCVIGIIILLAGKCRC 45 (74)
T ss_dssp TCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CCCCCcccchHHheeccchhHHHHHHHHHHHHHcCcccc
Confidence 56666666 46888777777777777776544443
No 11
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=52.31 E-value=25 Score=20.09 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=16.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHh
Q 034219 20 NSPLPYMFGGLLLVFGVIAVALMFLAC 46 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIAvALliLaC 46 (101)
..|.+.+...++.+.|.+.+-|++|.+
T Consensus 4 p~~~n~~~Iv~gvi~~ivliGl~lLli 30 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGAILLIGLAALLI 30 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHHHHHHHHHHHHH
Confidence 456677666666666666555555543
No 12
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=48.12 E-value=21 Score=22.77 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred ccccCChhH-----HHHHHHHHHHHHHHHHHHHHhhh
Q 034219 17 VQWNSPLPY-----MFGGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 17 ~~W~SPvPY-----LFgGLa~MlgLIAvALliLaCSy 48 (101)
..|.+|.=| =.|||.+-..|.++.++||.+-+
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 346666666 46777776666666667765443
No 13
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=45.34 E-value=25 Score=19.10 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=8.6
Q ss_pred cCChhHHHHHHHHHHHHHHHH
Q 034219 20 NSPLPYMFGGLLLVFGVIAVA 40 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIAvA 40 (101)
++.++-+-+|.. .|++.++
T Consensus 9 ~~~~~~I~~~vv--~Gv~ll~ 27 (41)
T 2k9y_A 9 GSGNLAVIGGVA--VGVVLLL 27 (41)
T ss_dssp CCSSTHHHHHHH--HHHHHHH
T ss_pred CCceEEEEeehh--HHHHHHH
Confidence 444555544443 4443344
No 14
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=43.67 E-value=28 Score=19.71 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 034219 26 MFGGLLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 26 LFgGLa~MlgLIAvALliLaCSy~k 50 (101)
|..|.++.+-|+.++|.++.--|-+
T Consensus 5 L~lg~Gvl~LLviV~LgV~LI~f~~ 29 (35)
T 2lk9_A 5 LLLGIGILVLLIIVILGVPLIIFTI 29 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eeecccHHHHHHHHHhcchheEEee
Confidence 4578888888999999888666643
No 15
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=42.41 E-value=12 Score=21.33 Aligned_cols=11 Identities=55% Similarity=0.875 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 034219 34 FGVIAVALMFL 44 (101)
Q Consensus 34 lgLIAvALliL 44 (101)
+|+||.+|.|+
T Consensus 6 l~fiAt~Lfi~ 16 (36)
T 3arc_M 6 LGLIATALFVL 16 (36)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555554
No 16
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=42.32 E-value=21 Score=20.19 Aligned_cols=16 Identities=25% Similarity=0.764 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 034219 29 GLLLVFGVIAVALMFL 44 (101)
Q Consensus 29 GLa~MlgLIAvALliL 44 (101)
-||-.||+.++.|++|
T Consensus 9 ~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVI 24 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677888888888776
No 17
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Probab=40.73 E-value=28 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=18.5
Q ss_pred ccccccCChhHHHHHHHHHHHHH
Q 034219 15 GLVQWNSPLPYMFGGLLLVFGVI 37 (101)
Q Consensus 15 ~~~~W~SPvPYLFgGLa~MlgLI 37 (101)
++..||||.|.+|..-|+..|.-
T Consensus 140 ~~P~W~t~lp~~Fl~sa~~sG~a 162 (253)
T 2vpz_C 140 NRPLWNGLMAGLFPLTALVLALG 162 (253)
T ss_dssp TSTTSCTTHHHHHHHHHHHHHHH
T ss_pred CcccccchHHHHHHHHHHHHHHH
Confidence 46789999999998888777764
No 18
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=40.24 E-value=32 Score=19.55 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034219 27 FGGLLLVFGVIAVALMFL 44 (101)
Q Consensus 27 FgGLa~MlgLIAvALliL 44 (101)
..-||-.||+.++.|+||
T Consensus 7 L~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 7 LAIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345778888888888877
No 19
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=36.66 E-value=15 Score=30.70 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=19.0
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 034219 14 AGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCH 48 (101)
Q Consensus 14 ~~~~~W~SPvPYLFgGLa~MlgLIAvALliLaCSy 48 (101)
+.-|.| +=-|+||.+ .||+++|+||+|+-
T Consensus 404 ~Taw~W---~~~l~gG~~---~~~~i~~~i~~~v~ 432 (439)
T 3j0f_E 404 KTSWSW---LFALFGGAS---SLLIIGLMIFACSM 432 (439)
T ss_pred hhHHHH---HHHHhcccH---HHHHHHHHHHHHhh
Confidence 334666 345778877 56777777777754
No 20
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.32 E-value=67 Score=18.65 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=16.0
Q ss_pred cCChhHHHHHHHH-HHHHHHHHHHHHHhhhcc
Q 034219 20 NSPLPYMFGGLLL-VFGVIAVALMFLACCHDK 50 (101)
Q Consensus 20 ~SPvPYLFgGLa~-MlgLIAvALliLaCSy~k 50 (101)
.|++|-+-+|... ++++.+++|++..+-+||
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 3566666666554 444444454444444444
No 21
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.58 E-value=41 Score=19.50 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=13.3
Q ss_pred CChhHHHHHHHH-HHHHHHHHHHHHHhhhcc
Q 034219 21 SPLPYMFGGLLL-VFGVIAVALMFLACCHDK 50 (101)
Q Consensus 21 SPvPYLFgGLa~-MlgLIAvALliLaCSy~k 50 (101)
|++|-+-+|... ++++..++|++..+=+||
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 445554444443 344444444444444443
No 22
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=32.31 E-value=16 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=16.4
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 034219 14 AGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACC 47 (101)
Q Consensus 14 ~~~~~W~SPvPYLFgGLa~MlgLIAvALliLaCS 47 (101)
+.-|.| +--|+||.+. ||+++|+||+|+
T Consensus 404 ~Taw~W---~~~l~GG~~~---~~~i~~~~~~~v 431 (442)
T 3j0c_A 404 KTAWTW---LTSLLGGSAV---IIIIGLVLATIV 431 (442)
T ss_dssp HHHHHH---HHTTSSHHHH---HHHHHHHHHHHH
T ss_pred hhHHHH---HHHHhcccHH---HHHHHHHHHHHH
Confidence 344667 3447888774 455556555553
No 23
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=30.25 E-value=1.2e+02 Score=20.02 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=9.4
Q ss_pred cCChhHHHHHHHHHHHHHHHH
Q 034219 20 NSPLPYMFGGLLLVFGVIAVA 40 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIAvA 40 (101)
|||+- |-.-+..-|||+|
T Consensus 8 hsptt---gvvtv~viliava 25 (90)
T 1zza_A 8 HSPTT---GVVTVIVILIAIA 25 (90)
T ss_dssp TTTHH---HHHHHHHHHHHHH
T ss_pred cCCCc---ceEEehhHHHHHH
Confidence 56654 3334445566664
No 24
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=30.18 E-value=1.1e+02 Score=19.66 Aligned_cols=29 Identities=17% Similarity=0.446 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034219 25 YMFGGLLLVFGVIAVALMFLACCHDKSSI 53 (101)
Q Consensus 25 YLFgGLa~MlgLIAvALliLaCSy~k~~s 53 (101)
-+|+|+.+++|+|.+.-==.-|...+..+
T Consensus 21 LifA~vLfi~GI~iilS~KckCk~~qk~r 49 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHHcCccccCCCCCCC
Confidence 37999999999988777667787766543
No 25
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis}
Probab=28.21 E-value=44 Score=26.05 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=12.4
Q ss_pred CCceEEEecCCCCCcee
Q 034219 77 EPKIVVIMAGDDHPTRI 93 (101)
Q Consensus 77 e~kivVIMAGd~~PTfL 93 (101)
.|+||+||+=|-....|
T Consensus 27 ~PNIv~I~~Ddl~~~~l 43 (491)
T 2qzu_A 27 TPNLVFIMADQYRGDAI 43 (491)
T ss_dssp SCEEEEEEETTCCTTCC
T ss_pred CCCEEEEEeCCCCccch
Confidence 58999999866555444
No 26
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.03 E-value=18 Score=20.39 Aligned_cols=31 Identities=10% Similarity=0.241 Sum_probs=18.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034219 20 NSPLPYMFGGLLLVFGVIAVALMFLACCHDK 50 (101)
Q Consensus 20 ~SPvPYLFgGLa~MlgLIAvALliLaCSy~k 50 (101)
.||+|-+-.|..-.|.++-++|.+..+=+||
T Consensus 4 ~s~~~sIaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 4 ASPVTFIIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHhheEEeec
Confidence 4677777777666555555555555555544
No 27
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=23.62 E-value=23 Score=18.71 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.6
Q ss_pred EEecCCCCCceecc
Q 034219 82 VIMAGDDHPTRIAR 95 (101)
Q Consensus 82 VIMAGd~~PTfLA~ 95 (101)
.|.+|+-||+||..
T Consensus 5 ciypgqynpsfisd 18 (26)
T 3u7d_B 5 CIFPGQYNPSFISD 18 (26)
T ss_pred ccccCccCcccccC
Confidence 47899999999863
No 28
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=23.21 E-value=80 Score=21.33 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=14.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 034219 19 WNSPLPYMFGGLLLVFGVIAVALMFLACC 47 (101)
Q Consensus 19 W~SPvPYLFgGLa~MlgLIAvALliLaCS 47 (101)
|+-=-+|++.|+.+++. -+..++.+|+
T Consensus 93 wkn~K~~iii~~iv~ii--i~iIi~~~c~ 119 (119)
T 2kog_A 93 WKNLKMMIILGVICAII--LIIIIVYFST 119 (119)
T ss_dssp CHHHHHHHHHHHHHHHH--HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhhheeC
Confidence 55555666655554433 3333455775
No 29
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=22.86 E-value=19 Score=27.17 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhcccC
Q 034219 47 CHDKSS 52 (101)
Q Consensus 47 Sy~k~~ 52 (101)
-+||..
T Consensus 304 ~~~~~~ 309 (315)
T 1cd1_A 304 IWRRRS 309 (315)
T ss_dssp ------
T ss_pred heehhc
Confidence 335543
No 30
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=28.34 E-value=18 Score=25.54 Aligned_cols=8 Identities=38% Similarity=0.654 Sum_probs=6.1
Q ss_pred cCCCCCce
Q 034219 85 AGDDHPTR 92 (101)
Q Consensus 85 AGd~~PTf 92 (101)
=|=|||||
T Consensus 85 nGYENPTY 92 (122)
T 2lp1_A 85 NGYENPTY 92 (122)
Confidence 48888885
No 31
>2bsc_A F17A-G adhesin; bacterial adhesion, lectin, protein-sugar complex, fimbriae; HET: NAG; 1.4A {Escherichia coli} SCOP: b.2.3.5 PDB: 1o9v_A* 1zpl_A* 1o9w_A* 3f64_A* 3f6j_A* 1o9z_A 2bsb_A* 1zk5_A* 1oio_A* 3ffo_A* 2bs8_A* 2bs7_1*
Probab=22.54 E-value=25 Score=26.14 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=11.2
Q ss_pred CCceEEEecCCCCCc
Q 034219 77 EPKIVVIMAGDDHPT 91 (101)
Q Consensus 77 e~kivVIMAGd~~PT 91 (101)
|.-=++||+||.+|+
T Consensus 78 dyiGili~~GDt~ys 92 (177)
T 2bsc_A 78 EEVGLLIWMGDTKYS 92 (177)
T ss_dssp SSEEEEEEEESSSGG
T ss_pred ceEEEEEEecCcccc
Confidence 344479999999775
No 32
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=22.33 E-value=88 Score=19.78 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 034219 30 LLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k~ 51 (101)
+++.|+|+++.|+|+.=-|..+
T Consensus 30 Mgv~m~Lf~vFl~iiLeIYNsS 51 (65)
T 3arc_H 30 MAVFMGLFLVFLLIILEIYNST 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCcc
Confidence 4667888999998887666543
No 33
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.33 E-value=1.4e+02 Score=19.10 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH-hhhcc
Q 034219 28 GGLLLVFGVIAVALMFLA-CCHDK 50 (101)
Q Consensus 28 gGLa~MlgLIAvALliLa-CSy~k 50 (101)
.+|+...||+-++=+... |-+|+
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcr 35 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSR 35 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHH
Confidence 566666666666655554 55444
No 34
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=20.86 E-value=21 Score=31.12 Aligned_cols=27 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034219 23 LPYMFGGLLLVFGVIAVALMFLACCHD 49 (101)
Q Consensus 23 vPYLFgGLa~MlgLIAvALliLaCSy~ 49 (101)
+..+++-|+..+.|+.+.||+++|-++
T Consensus 704 ~~aii~il~~~~~ll~~~ll~~~~~~~ 730 (880)
T 1q55_A 704 LPIILVILGSVLALLILFLLLLLFLKR 730 (880)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345666666777777666666665443
Done!