Query 034219
Match_columns 101
No_of_seqs 95 out of 97
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 18:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 46.7 4.4 0.00032 21.8 1.5 12 34-45 6-17 (36)
2 d2axth1 f.23.33.1 (H:2-65) Pho 28.7 27 0.002 20.6 3.2 22 30-51 30-51 (64)
3 d1ijda_ f.3.1.1 (A:) Light-har 16.9 73 0.0053 17.5 3.3 20 23-42 16-35 (46)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 15.8 1.1E+02 0.0079 17.9 4.2 23 29-51 34-56 (100)
5 d1nkza_ f.3.1.1 (A:) Light-har 14.3 90 0.0066 17.5 3.3 20 23-42 16-35 (53)
6 d1o5ha_ a.191.1.1 (A:) Hypothe 14.0 73 0.0053 21.3 3.3 22 28-49 24-45 (200)
7 d1ppjd2 f.23.11.1 (D:196-241) 13.8 77 0.0056 17.0 2.8 17 28-44 9-25 (46)
8 d2hsja1 c.23.10.3 (A:1-211) Un 13.6 45 0.0033 21.0 2.0 13 75-87 80-92 (211)
9 d2ckca1 d.76.2.1 (A:2563-2622) 13.4 44 0.0032 19.1 1.7 8 84-91 18-25 (60)
10 d1p3da2 c.59.1.1 (A:322-473) U 13.3 43 0.0032 19.7 1.7 12 76-87 128-140 (152)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=46.75 E-value=4.4 Score=21.80 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q 034219 34 FGVIAVALMFLA 45 (101)
Q Consensus 34 lgLIAvALliLa 45 (101)
||+||-+|.||.
T Consensus 6 Lg~iAt~LFilv 17 (36)
T d2axtm1 6 LGLIATALFVLV 17 (36)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666653
No 2
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.67 E-value=27 Score=20.60 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 034219 30 LLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 30 La~MlgLIAvALliLaCSy~k~ 51 (101)
+++.|+|++|.|+|+.=-|..+
T Consensus 30 Mgv~m~Lf~vfl~iiLeiYNss 51 (64)
T d2axth1 30 MAVFMGLFLVFLLIILEIYNST 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4677889999999987766543
No 3
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=16.90 E-value=73 Score=17.47 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 034219 23 LPYMFGGLLLVFGVIAVALM 42 (101)
Q Consensus 23 vPYLFgGLa~MlgLIAvALl 42 (101)
+|-++|..|++-.++=+|+|
T Consensus 16 ~Pl~LgsVav~s~~VH~avl 35 (46)
T d1ijda_ 16 LPLMLGAVAITALLVHAAVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 45556665555555544443
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.77 E-value=1.1e+02 Score=17.90 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 034219 29 GLLLVFGVIAVALMFLACCHDKS 51 (101)
Q Consensus 29 GLa~MlgLIAvALliLaCSy~k~ 51 (101)
.++.+++++...+++.+|.++|.
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 35555556666666666665443
No 5
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=14.27 E-value=90 Score=17.53 Aligned_cols=20 Identities=15% Similarity=0.542 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 034219 23 LPYMFGGLLLVFGVIAVALM 42 (101)
Q Consensus 23 vPYLFgGLa~MlgLIAvALl 42 (101)
+|-++|..|++-.++=+|+|
T Consensus 16 ~Pl~LgsVav~s~~VH~avl 35 (53)
T d1nkza_ 16 IPALLGSVTVIAILVHLAIL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 45566666655555555544
No 6
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=13.97 E-value=73 Score=21.34 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 034219 28 GGLLLVFGVIAVALMFLACCHD 49 (101)
Q Consensus 28 gGLa~MlgLIAvALliLaCSy~ 49 (101)
|+.++..|-++.||..++|-+-
T Consensus 24 GsaaAl~galg~aL~~MVa~lT 45 (200)
T d1o5ha_ 24 GAVGSVVGAMACALAEMVANFT 45 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999999999873
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.78 E-value=77 Score=17.00 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034219 28 GGLLLVFGVIAVALMFL 44 (101)
Q Consensus 28 gGLa~MlgLIAvALliL 44 (101)
.|+-+|+.|+.++.+..
T Consensus 9 mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36667777665554443
No 8
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=13.63 E-value=45 Score=20.99 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=10.8
Q ss_pred CCCCceEEEecCC
Q 034219 75 ALEPKIVVIMAGD 87 (101)
Q Consensus 75 ~~e~kivVIMAGd 87 (101)
...|++||||.|-
T Consensus 80 ~~~pd~vii~~G~ 92 (211)
T d2hsja1 80 GGAVDKIFLLIGT 92 (211)
T ss_dssp CSCCCEEEEECCH
T ss_pred cCCCCEEEEEeCc
Confidence 5678999999983
No 9
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.37 E-value=44 Score=19.12 Aligned_cols=8 Identities=38% Similarity=0.991 Sum_probs=5.6
Q ss_pred ecCCCCCc
Q 034219 84 MAGDDHPT 91 (101)
Q Consensus 84 MAGd~~PT 91 (101)
+.|++.|+
T Consensus 18 L~G~~AP~ 25 (60)
T d2ckca1 18 LVGEDAPK 25 (60)
T ss_dssp ECTTSSCB
T ss_pred ecCcCCcC
Confidence 67777765
No 10
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=13.30 E-value=43 Score=19.65 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=7.6
Q ss_pred CCCceEEEe-cCC
Q 034219 76 LEPKIVVIM-AGD 87 (101)
Q Consensus 76 ~e~kivVIM-AGd 87 (101)
.+..+||+| |||
T Consensus 128 ~~gDiil~mGaGd 140 (152)
T d1p3da2 128 QDGDLILAQGAGS 140 (152)
T ss_dssp CTTCEEEEECSST
T ss_pred CCCCEEEEEcCCC
Confidence 445577777 665
Done!