BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034223
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
           HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
 pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
           HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
          Length = 562

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 30  INNINRVEDPNEMLMPTEDSRR------QLLGTWYSSYGALEGNSVP 70
           IN+++R+++P  ++ P  DSR       +L+G   +     E + +P
Sbjct: 486 INHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIP 532


>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
 pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
          Length = 582

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 30  INNINRVEDPNEMLMPTEDSRR------QLLGTWYSSYGALEGNSVP 70
           IN+++R+++P  ++ P  DSR       +L+G   +     E + +P
Sbjct: 506 INHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIP 552


>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
 pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
          Length = 582

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 30  INNINRVEDPNEMLMPTEDSRR------QLLGTWYSSYGALEGNSVP 70
           IN+++R+++P  ++ P  DSR       +L+G   +     E + +P
Sbjct: 506 INHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIP 552


>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
           Aeropyrum Pernix K1
 pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
           Aeropyrum Pernix K1
 pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
           AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
           Phosphate
 pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
           AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
           Phosphate
 pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
 pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
 pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
 pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
 pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
 pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
 pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
 pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
          Length = 582

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 30  INNINRVEDPNEMLMPTEDSRR------QLLGTWYSSYGALEGNSVP 70
           IN+++R+++P  ++ P  DSR       +L+G   +     E + +P
Sbjct: 506 INHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIP 552


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.128    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,845,806
Number of Sequences: 62578
Number of extensions: 101332
Number of successful extensions: 121
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 10
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)