Query 034223
Match_columns 101
No_of_seqs 114 out of 154
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 11:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03222 rapid alkalinization 100.0 5.1E-36 1.1E-40 215.1 5.0 87 11-97 19-114 (119)
2 PLN03221 rapid alkalinization 100.0 5.1E-33 1.1E-37 203.3 5.2 70 28-97 45-132 (137)
3 PF05498 RALF: Rapid ALkaliniz 99.9 1.6E-26 3.4E-31 150.9 3.1 61 38-98 2-62 (66)
4 PF07172 GRP: Glycine rich pro 81.7 1.3 2.8E-05 30.6 2.3 12 1-12 1-12 (95)
5 PF10731 Anophelin: Thrombin i 46.7 20 0.00043 23.8 2.3 20 1-20 1-21 (65)
6 PF10917 DUF2708: Protein of u 31.5 17 0.00036 22.5 0.1 18 1-18 1-18 (43)
7 PF14654 Epiglycanin_C: Mucin, 30.0 35 0.00076 24.6 1.6 18 2-19 14-32 (106)
8 PF08358 Flexi_CP_N: Carlaviru 23.3 43 0.00094 21.1 0.9 9 84-92 38-46 (52)
9 PLN00213 predicted protein; Pr 21.7 90 0.0019 22.9 2.4 13 1-13 1-13 (118)
10 PRK01470 tatA twin arginine tr 21.6 88 0.0019 19.5 2.1 17 1-17 1-17 (51)
11 PRK11024 colicin uptake protei 20.5 75 0.0016 22.4 1.8 13 8-20 24-36 (141)
No 1
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=215.10 Aligned_cols=87 Identities=34% Similarity=0.510 Sum_probs=75.9
Q ss_pred HHHHHHHhccccCCc-CC----cccccc-cccc---CCccccCCchhhhhcccCccccccCCCCCCCCCCCCCCCCcccC
Q 034223 11 MVAAAVVDSSAHGSS-SW----GRINNI-NRVE---DPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNC 81 (101)
Q Consensus 11 ~l~la~v~~~a~~~~-~~----~~C~Gs-~Ec~---~eeE~~m~SE~sRR~L~~~~YISYgAL~~d~VPC~~rG~SYynC 81 (101)
.+++|.|++++++-. || +.|+|+ +||. +|+||+||||++||+|++++||||+||++|+|||+++|+|||||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~rYISYgALrrd~vPCsrrG~SYynC 98 (119)
T PLN03222 19 HFLFAAVTSQSTGFSGDFMPIDSKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNC 98 (119)
T ss_pred HHHHHHhhcccccccccccCCCCcCCCCHHHhhcccccchhccccHHHHHHHhhcCeecHHHhcCCCCCCCCCCCCcccc
Confidence 457888888866411 22 369999 9996 47789999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 034223 82 NGRGLSRPTATAPRRS 97 (101)
Q Consensus 82 ~p~~~aNPY~Rg~~~~ 97 (101)
++++++|||+|||++.
T Consensus 99 ~~~~~ANPY~RGCs~I 114 (119)
T PLN03222 99 RRGAQANPYSRGCSAI 114 (119)
T ss_pred CCCCCCCCCCCCchhh
Confidence 9999999999999875
No 2
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=99.97 E-value=5.1e-33 Score=203.34 Aligned_cols=70 Identities=31% Similarity=0.516 Sum_probs=63.7
Q ss_pred cccccc-cccc--------------CC---ccccCCchhhhhcccCccccccCCCCCCCCCCCCCCCCcccCCCCCCCCC
Q 034223 28 GRINNI-NRVE--------------DP---NEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRP 89 (101)
Q Consensus 28 ~~C~Gs-~Ec~--------------~e---eE~~m~SE~sRR~L~~~~YISYgAL~~d~VPC~~rG~SYynC~p~~~aNP 89 (101)
..|+|+ +||. ++ +|++||||++||+|++++||||+||++|+|||+++|+|||||++++++||
T Consensus 45 ~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYISYgALrrd~vPCsrrG~SYynC~~~~pANP 124 (137)
T PLN03221 45 TECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANP 124 (137)
T ss_pred CcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCccCHHHhccCCCCCCCCCCCccccCCCCCCCC
Confidence 359999 9994 12 27799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 034223 90 TATAPRRS 97 (101)
Q Consensus 90 Y~Rg~~~~ 97 (101)
|+|||++.
T Consensus 125 Y~RGCs~I 132 (137)
T PLN03221 125 YSRGCSAI 132 (137)
T ss_pred CCCCcccc
Confidence 99999875
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.92 E-value=1.6e-26 Score=150.92 Aligned_cols=61 Identities=39% Similarity=0.692 Sum_probs=57.6
Q ss_pred CCccccCCchhhhhcccCccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 034223 38 DPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRPTATAPRRSD 98 (101)
Q Consensus 38 ~eeE~~m~SE~sRR~L~~~~YISYgAL~~d~VPC~~rG~SYynC~p~~~aNPY~Rg~~~~~ 98 (101)
+|+|++|+||++||+|++++||||+||++|.+||+.+|.+||||.+++++|||+|||++..
T Consensus 2 ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~ 62 (66)
T PF05498_consen 2 EEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKIT 62 (66)
T ss_pred hhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccc
Confidence 5778999999999999999999999999999999999999999999999999999999853
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.66 E-value=1.3 Score=30.58 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=8.6
Q ss_pred CchHHHHHHHHH
Q 034223 1 MDLKVVMMLFMV 12 (101)
Q Consensus 1 M~~k~~l~~~~l 12 (101)
|..|.+|+|.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 888987776543
No 5
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=46.72 E-value=20 Score=23.79 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=12.6
Q ss_pred CchHHHHH-HHHHHHHHHhcc
Q 034223 1 MDLKVVMM-LFMVAAAVVDSS 20 (101)
Q Consensus 1 M~~k~~l~-~~~l~la~v~~~ 20 (101)
|-.|-++| |++++|+.++-+
T Consensus 1 MA~Kl~vialLC~aLva~vQ~ 21 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQS 21 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhc
Confidence 66787777 556666655444
No 6
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=31.49 E-value=17 Score=22.46 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=12.6
Q ss_pred CchHHHHHHHHHHHHHHh
Q 034223 1 MDLKVVMMLFMVAAAVVD 18 (101)
Q Consensus 1 M~~k~~l~~~~l~la~v~ 18 (101)
|++-++.+|.+|+++.|+
T Consensus 1 MN~YsvfvFaiLaissvs 18 (43)
T PF10917_consen 1 MNVYSVFVFAILAISSVS 18 (43)
T ss_pred CceeeehHHHHhhhhccc
Confidence 677777777777777664
No 7
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=29.99 E-value=35 Score=24.57 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHHH-HHhc
Q 034223 2 DLKVVMMLFMVAAA-VVDS 19 (101)
Q Consensus 2 ~~k~~l~~~~l~la-~v~~ 19 (101)
.+|+|-||++-+.+ ||+.
T Consensus 14 sL~PWeIfLItLasVvvav 32 (106)
T PF14654_consen 14 SLKPWEIFLITLASVVVAV 32 (106)
T ss_pred CccchHHHHHHHHHHHHHH
Confidence 36899998854444 4433
No 8
>PF08358 Flexi_CP_N: Carlavirus coat; InterPro: IPR013569 This domain is found together with the viral coat protein domain (IPR000052 from INTERPRO) in coat/capsid proteins of the plant infecting Carlavirus. It is required for genome encapsidation by forming ribonucleoprotein complexes along with TGB1 helicase and viral RNA. The N- and the C terminus of this coat protein can be exposed on the surface of the virus particle. The central core sequence may be important in maintaining correct tertiary structure of the coat protein and/or play a role in the interaction with the viral RNA. Coat proteins are often used to distinguish between Carlavirus isolates. In the coat protein amino acid sequences of definitive and tentative species of carlaviruses, there is a region of seven amino acids (GLGVPTE) that are conserved []. The complete coat protein (CP) sequences of 29 Indian Chrysanthemum virus B (CVB) isolates were highly heterogeneous, sharing nucleotide sequence identities of 74-98% [, ].
Probab=23.32 E-value=43 Score=21.05 Aligned_cols=9 Identities=11% Similarity=0.195 Sum_probs=7.2
Q ss_pred CCCCCCCCC
Q 034223 84 RGLSRPTAT 92 (101)
Q Consensus 84 ~~~aNPY~R 92 (101)
+.++|||+|
T Consensus 38 ~d~tN~y~R 46 (52)
T PF08358_consen 38 GDPTNPYSR 46 (52)
T ss_pred CCcCcccCC
Confidence 357999998
No 9
>PLN00213 predicted protein; Provisional
Probab=21.66 E-value=90 Score=22.89 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHH
Q 034223 1 MDLKVVMMLFMVA 13 (101)
Q Consensus 1 M~~k~~l~~~~l~ 13 (101)
|++|.+++|++++
T Consensus 1 m~iknV~~ll~v~ 13 (118)
T PLN00213 1 MSIKNVFLLLAVL 13 (118)
T ss_pred CchHHHHHHHHHH
Confidence 8999998888664
No 10
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=21.60 E-value=88 Score=19.47 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHHHHH
Q 034223 1 MDLKVVMMLFMVAAAVV 17 (101)
Q Consensus 1 M~~k~~l~~~~l~la~v 17 (101)
|++.+|-+++++++|.+
T Consensus 1 mgig~~elliI~vi~ll 17 (51)
T PRK01470 1 MGMSFSHLLIVLLIIFV 17 (51)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 67777776665555543
No 11
>PRK11024 colicin uptake protein TolR; Provisional
Probab=20.47 E-value=75 Score=22.40 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcc
Q 034223 8 MLFMVAAAVVDSS 20 (101)
Q Consensus 8 ~~~~l~la~v~~~ 20 (101)
+|++|++.|++++
T Consensus 24 vfvLLiFFmvts~ 36 (141)
T PRK11024 24 LLVLLLIFMATAP 36 (141)
T ss_pred HHHHHHHHHhccc
Confidence 3566677777665
Done!