Query 034223
Match_columns 101
No_of_seqs 114 out of 154
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 19:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cz6_A Protein (androctonin); 48.9 6.3 0.00021 21.0 0.9 15 70-84 9-23 (26)
2 2kmz_A Tumor necrosis factor r 29.3 45 0.0015 20.4 2.7 24 67-91 5-34 (53)
3 1ozb_I Preprotein translocase 23.3 73 0.0025 15.2 2.5 17 66-83 5-21 (27)
4 2kn0_A FN14; tweak, TNF recept 16.8 65 0.0022 20.5 1.6 26 68-94 2-33 (66)
5 1z65_A PRPLP, prion-like prote 13.1 1.5E+02 0.0052 16.1 2.3 13 5-17 9-21 (30)
6 1clv_I Protein (alpha-amylase 11.3 73 0.0025 17.5 0.6 9 65-73 11-19 (32)
7 1e0f_I Haemadin, factor IIA; c 11.3 89 0.0031 19.0 1.1 29 67-96 6-34 (57)
8 3mhp_C TIC62_peptide, ferredox 11.0 1.6E+02 0.0055 15.6 1.9 16 57-72 8-23 (26)
9 1axh_A Atracotoxin-HVI, ACTX-H 10.9 75 0.0026 18.1 0.6 15 80-94 3-17 (37)
10 2jq5_A SEC-C motif; structural 10.5 51 0.0018 22.7 -0.2 13 69-82 3-15 (128)
No 1
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=48.86 E-value=6.3 Score=20.98 Aligned_cols=15 Identities=40% Similarity=1.059 Sum_probs=11.9
Q ss_pred CCCCCCCCcccCCCC
Q 034223 70 PCDAPGSSYYNCNGR 84 (101)
Q Consensus 70 PC~~rG~SYynC~p~ 84 (101)
-|-+||--||.|..+
T Consensus 9 icrrrggcyykctnr 23 (26)
T 1cz6_A 9 ICRRRGGCYYKCTNR 23 (26)
T ss_dssp ECCSSSCCEEEECCC
T ss_pred HHHhcCceEEEccCC
Confidence 387889999999653
No 2
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=29.26 E-value=45 Score=20.41 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCcc----cCCC--CCCCCCCC
Q 034223 67 NSVPCDAPGSSYY----NCNG--RGLSRPTA 91 (101)
Q Consensus 67 d~VPC~~rG~SYy----nC~p--~~~aNPY~ 91 (101)
...|| .||.||. .|.. .-++.||+
T Consensus 5 ~~~pC-~~GsswS~DLdKCmdcs~C~~~p~S 34 (53)
T 2kmz_A 5 GTAPC-SRGSSWSADLDKCMDCASCRARPHS 34 (53)
T ss_dssp SCCSS-CSSCBCCTTTTCCBCSTTCSSCCCC
T ss_pred CcCcC-CCCcccchhhhhhhccccCCCCccc
Confidence 35789 6799998 3422 24566765
No 3
>1ozb_I Preprotein translocase SECA subunit; zinc binding motif, protein-protein complex, protein transport; 2.80A {Haemophilus influenzae} SCOP: g.74.1.1
Probab=23.34 E-value=73 Score=15.22 Aligned_cols=17 Identities=35% Similarity=1.071 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCcccCCC
Q 034223 66 GNSVPCDAPGSSYYNCNG 83 (101)
Q Consensus 66 ~d~VPC~~rG~SYynC~p 83 (101)
.+..|| +.|..|-.|..
T Consensus 5 n~~cpc-gsgkk~k~c~~ 21 (27)
T 1ozb_I 5 NEPCPC-GSGKKYKHCHG 21 (27)
T ss_dssp TSBCTT-TCSSBGGGTTT
T ss_pred CCcccC-CCchhhhhccc
Confidence 345777 67888888753
No 4
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=16.77 E-value=65 Score=20.50 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=14.9
Q ss_pred CCCCCCCCCCcc----cC--CCCCCCCCCCCCC
Q 034223 68 SVPCDAPGSSYY----NC--NGRGLSRPTATAP 94 (101)
Q Consensus 68 ~VPC~~rG~SYy----nC--~p~~~aNPY~Rg~ 94 (101)
+.|| .+|++|. +| ...=++.||+-=|
T Consensus 2 ~~pC-prGssws~dLdkCM~Cs~C~~~p~SdfC 33 (66)
T 2kn0_A 2 QGEC-PEGRAYSQDLGKCMECSVCKNSEKSDFC 33 (66)
T ss_dssp CCCC-CSSEEEETTTTEEEESTTCSSCCCCTTT
T ss_pred cccC-CCCcccchhHHhhcccCcCCCCCCcccc
Confidence 4588 6788887 34 1123455665433
No 5
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=13.15 E-value=1.5e+02 Score=16.14 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 034223 5 VVMMLFMVAAAVV 17 (101)
Q Consensus 5 ~~l~~~~l~la~v 17 (101)
++.|+++|++...
T Consensus 9 wlai~c~LLfs~L 21 (30)
T 1z65_A 9 WVAILCMLLASHL 21 (30)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhH
Confidence 4444555555544
No 6
>1clv_I Protein (alpha-amylase inhibitor); insect alpha-amylase inhibitor, amaranthus hypochondriacus, yellow MEAL WORM, knottin, hydrolase; 2.00A {Tenebrio molitor} SCOP: g.3.2.1 PDB: 1htx_A 1qfd_A
Probab=11.33 E-value=73 Score=17.46 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q 034223 65 EGNSVPCDA 73 (101)
Q Consensus 65 ~~d~VPC~~ 73 (101)
+-|-|||-.
T Consensus 11 kmdgvpcce 19 (32)
T 1clv_I 11 KMDGVPCCE 19 (32)
T ss_dssp HHHCCCBCT
T ss_pred cCCCccccC
Confidence 346688853
No 7
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=11.26 E-value=89 Score=19.05 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 034223 67 NSVPCDAPGSSYYNCNGRGLSRPTATAPRR 96 (101)
Q Consensus 67 d~VPC~~rG~SYynC~p~~~aNPY~Rg~~~ 96 (101)
..||| +.|.-=|.|--+...--|-..|+.
T Consensus 6 gkvpc-pdgevgytcdcgekiclygqscnd 34 (57)
T 1e0f_I 6 GKVPC-PDGEVGYTCDCGEKICLYGQSCND 34 (57)
T ss_dssp SSSBC-CSSSCSSCEECSSSEECTTCCBSS
T ss_pred ccccC-CCCceeeeccCCceeeEecccccC
Confidence 47999 455555655433344445555553
No 8
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=11.04 E-value=1.6e+02 Score=15.59 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.8
Q ss_pred cccccCCCCCCCCCCC
Q 034223 57 WYSSYGALEGNSVPCD 72 (101)
Q Consensus 57 ~YISYgAL~~d~VPC~ 72 (101)
-|+.|.+||...-|+.
T Consensus 8 py~~Y~dlKPPsSPsP 23 (26)
T 3mhp_C 8 PYTAYDDLKPPSSPSP 23 (26)
T ss_dssp TTTTBTTSSCSSCSSC
T ss_pred ccccccccCCCCCCCC
Confidence 6899999999888874
No 9
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=10.94 E-value=75 Score=18.14 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=10.9
Q ss_pred cCCCCCCCCCCCCCC
Q 034223 80 NCNGRGLSRPTATAP 94 (101)
Q Consensus 80 nC~p~~~aNPY~Rg~ 94 (101)
.|.|.++.=||+.-|
T Consensus 3 ~C~psgQPCpyne~C 17 (37)
T 1axh_A 3 TCIPSGQPCPYNENC 17 (37)
T ss_dssp CSBCTTSBCSSGGGB
T ss_pred ccccCCCcCCCcccc
Confidence 477777778887665
No 10
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=10.53 E-value=51 Score=22.70 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.5
Q ss_pred CCCCCCCCCcccCC
Q 034223 69 VPCDAPGSSYYNCN 82 (101)
Q Consensus 69 VPC~~rG~SYynC~ 82 (101)
=|| +.|..|.+|.
T Consensus 3 CPC-GSg~~Y~~CC 15 (128)
T 2jq5_A 3 CVC-GSGKTYDDCC 15 (128)
T ss_dssp CSS-SSSSCHHHHH
T ss_pred CCC-CCCchHHHhC
Confidence 488 7899999883
Done!