Query 034223
Match_columns 101
No_of_seqs 114 out of 154
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 19:03:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hvwa_ g.3.6.2 (A:) Atracotox 39.3 5.8 0.00042 19.8 1.2 15 81-95 1-15 (26)
2 d1omca_ g.3.6.1 (A:) Conotoxin 27.2 11 0.0008 18.9 1.0 14 79-94 13-26 (27)
3 d3cx5d2 f.23.11.1 (D:261-307) 23.0 20 0.0014 20.0 1.7 12 1-12 9-20 (47)
4 d2dw4a3 d.16.1.5 (A:655-763) L 22.6 15 0.0011 20.7 1.2 10 85-94 97-106 (109)
5 d1axha_ g.3.6.2 (A:) Atracotox 20.2 14 0.001 19.8 0.6 15 80-94 3-17 (37)
6 d2v5za2 d.16.1.5 (A:290-401) M 18.1 17 0.0012 20.8 0.7 10 86-95 100-109 (112)
7 d1ppjd2 f.23.11.1 (D:196-241) 16.6 33 0.0024 18.7 1.7 12 1-12 9-20 (46)
8 d1ozbi_ g.74.1.1 (I:) Preprote 16.4 58 0.0043 16.0 2.5 18 67-85 5-22 (26)
9 d1b5qa2 d.16.1.5 (A:294-405) P 14.6 29 0.0021 19.6 1.2 9 86-94 101-109 (112)
10 d1clvi_ g.3.2.1 (I:) alpha-amy 11.3 34 0.0025 17.5 0.6 9 65-73 11-19 (32)
No 1
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=39.33 E-value=5.8 Score=19.82 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCC
Q 034223 81 CNGRGLSRPTATAPR 95 (101)
Q Consensus 81 C~p~~~aNPY~Rg~~ 95 (101)
|.|.++.-||+.-|-
T Consensus 1 cipsgqpcpynencc 15 (26)
T d1hvwa_ 1 CIPSGQPCPYNENCC 15 (26)
T ss_dssp CBCTTSBCSSTTSBS
T ss_pred CCCCCCcCCCCcccc
Confidence 667777788887663
No 2
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=27.22 E-value=11 Score=18.86 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=9.3
Q ss_pred ccCCCCCCCCCCCCCC
Q 034223 79 YNCNGRGLSRPTATAP 94 (101)
Q Consensus 79 ynC~p~~~aNPY~Rg~ 94 (101)
|||.. .-|||+.-|
T Consensus 13 ynccr--scnpytkrc 26 (27)
T d1omca_ 13 YNCCR--SCNPYTKRC 26 (27)
T ss_dssp TCBSS--CEETTTTEE
T ss_pred cchhc--ccCcccccc
Confidence 45543 479998765
No 3
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.97 E-value=20 Score=19.99 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=8.1
Q ss_pred CchHHHHHHHHH
Q 034223 1 MDLKVVMMLFMV 12 (101)
Q Consensus 1 M~~k~~l~~~~l 12 (101)
|++|..+++.+|
T Consensus 9 mg~K~~~i~s~l 20 (47)
T d3cx5d2 9 LGLKTVIILSSL 20 (47)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776644
No 4
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.64 E-value=15 Score=20.71 Aligned_cols=10 Identities=20% Similarity=0.062 Sum_probs=8.5
Q ss_pred CCCCCCCCCC
Q 034223 85 GLSRPTATAP 94 (101)
Q Consensus 85 ~~aNPY~Rg~ 94 (101)
=..+||+||+
T Consensus 97 W~~dp~~~Gs 106 (109)
T d2dw4a3 97 WRADPWARGS 106 (109)
T ss_dssp TTTCTTTSSS
T ss_pred cCCCCccCEe
Confidence 4689999997
No 5
>d1axha_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=20.23 E-value=14 Score=19.75 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=12.0
Q ss_pred cCCCCCCCCCCCCCC
Q 034223 80 NCNGRGLSRPTATAP 94 (101)
Q Consensus 80 nC~p~~~aNPY~Rg~ 94 (101)
.|.|.++.=||+..|
T Consensus 3 ~cipsgqpcpyne~c 17 (37)
T d1axha_ 3 TCIPSGQPCPYNENC 17 (37)
T ss_dssp CSBCTTSBCSSGGGB
T ss_pred ccccCCCcCCCcccc
Confidence 578888888998776
No 6
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.10 E-value=17 Score=20.76 Aligned_cols=10 Identities=0% Similarity=-0.243 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q 034223 86 LSRPTATAPR 95 (101)
Q Consensus 86 ~aNPY~Rg~~ 95 (101)
..|||+||+=
T Consensus 100 ~~dp~~~GsY 109 (112)
T d2v5za2 100 CEEQYSGGCY 109 (112)
T ss_dssp GGCTTTCSSS
T ss_pred CCCCccCccc
Confidence 4799999973
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.56 E-value=33 Score=18.71 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=7.4
Q ss_pred CchHHHHHHHHH
Q 034223 1 MDLKVVMMLFMV 12 (101)
Q Consensus 1 M~~k~~l~~~~l 12 (101)
|++|..+++.+|
T Consensus 9 mG~Kv~~~l~~l 20 (46)
T d1ppjd2 9 MGLKMLLMMGLL 20 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567776665544
No 8
>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=16.39 E-value=58 Score=16.02 Aligned_cols=18 Identities=33% Similarity=0.983 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCcccCCCCC
Q 034223 67 NSVPCDAPGSSYYNCNGRG 85 (101)
Q Consensus 67 d~VPC~~rG~SYynC~p~~ 85 (101)
+.-|| +.|+-|-.|....
T Consensus 5 ~~CpC-gSgkkyK~C~G~~ 22 (26)
T d1ozbi_ 5 EPCPC-GSGKKYKHCHGSR 22 (26)
T ss_dssp SBCTT-TCSSBGGGTTTCC
T ss_pred CcCCC-CCCccHHHcCCcc
Confidence 44566 7899999997543
No 9
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=14.62 E-value=29 Score=19.56 Aligned_cols=9 Identities=11% Similarity=-0.123 Sum_probs=7.8
Q ss_pred CCCCCCCCC
Q 034223 86 LSRPTATAP 94 (101)
Q Consensus 86 ~aNPY~Rg~ 94 (101)
..|||+||+
T Consensus 101 ~~dp~~~Gs 109 (112)
T d1b5qa2 101 WSDRFYKGT 109 (112)
T ss_dssp TTCTTTSSS
T ss_pred CCCCCcccc
Confidence 589999996
No 10
>d1clvi_ g.3.2.1 (I:) alpha-amylase inhibitor (AAI) {Prince's feather (Amaranthus hypochondriacus) [TaxId: 28502]}
Probab=11.33 E-value=34 Score=17.46 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q 034223 65 EGNSVPCDA 73 (101)
Q Consensus 65 ~~d~VPC~~ 73 (101)
+-|-|||-.
T Consensus 11 kmdgvpcce 19 (32)
T d1clvi_ 11 KMDGVPCCE 19 (32)
T ss_dssp HHHCCCBCT
T ss_pred cCCCccccC
Confidence 346688853
Done!