BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034224
MISESDLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSY
LYKKLAEGSRFQDVKMVMKTIGSFMRCNIVGREMEAFKFKV

High Scoring Gene Products

Symbol, full name Information P value
AT1G74470 protein from Arabidopsis thaliana 8.4e-28
CHLP
Geranylgeranyl diphosphate reductase, chloroplastic
protein from Nicotiana tabacum 4.1e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034224
        (101 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2019165 - symbol:AT1G74470 species:3702 "Arabi...   312  8.4e-28   1
UNIPROTKB|Q9ZS34 - symbol:CHLP "Geranylgeranyl diphosphat...   306  4.1e-27   1


>TAIR|locus:2019165 [details] [associations]
            symbol:AT1G74470 species:3702 "Arabidopsis thaliana"
            [GO:0008152 "metabolic process" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0015979 "photosynthesis"
            evidence=IEA] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=IEA;IDA] [GO:0016491 "oxidoreductase activity"
            evidence=IEA] [GO:0016628 "oxidoreductase activity, acting on the
            CH-CH group of donors, NAD or NADP as acceptor" evidence=IEA]
            [GO:0045550 "geranylgeranyl reductase activity" evidence=IEA;IDA]
            [GO:0051188 "cofactor biosynthetic process" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0019344
            "cysteine biosynthetic process" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0035304
            "regulation of protein dephosphorylation" evidence=RCA]
            InterPro:IPR003042 InterPro:IPR010253 InterPro:IPR011774
            InterPro:IPR011777 InterPro:IPR023753 Pfam:PF07992 PRINTS:PR00420
            UniPathway:UPA00160 UniPathway:UPA00668 InterPro:IPR016040
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
            Gene3D:3.40.50.720 GO:GO:0009941 GO:GO:0045550 GO:GO:0009535
            GO:GO:0015979 GO:GO:0016628 EMBL:AC011765 GO:GO:0015995
            eggNOG:COG0644 EMBL:Y14044 EMBL:AY050893 EMBL:AY052328
            EMBL:AY059860 EMBL:AY075688 EMBL:AY091297 EMBL:AY102144
            EMBL:BT000734 EMBL:BT002571 EMBL:BT000656 EMBL:AK221185
            EMBL:AK317575 IPI:IPI00517438 PIR:F96773 RefSeq:NP_177587.1
            UniGene:At.25263 ProteinModelPortal:Q9CA67 SMR:Q9CA67
            DIP:DIP-53238N IntAct:Q9CA67 STRING:Q9CA67 PaxDb:Q9CA67
            PRIDE:Q9CA67 ProMEX:Q9CA67 EnsemblPlants:AT1G74470.1 GeneID:843788
            KEGG:ath:AT1G74470 TAIR:At1g74470 HOGENOM:HOG000147662
            InParanoid:Q9CA67 KO:K10960 OMA:YIGMCRR PhylomeDB:Q9CA67
            ProtClustDB:PLN00093 Genevestigator:Q9CA67 GO:GO:0010189
            TIGRFAMs:TIGR02023 TIGRFAMs:TIGR02028 TIGRFAMs:TIGR02032
            Uniprot:Q9CA67
        Length = 467

 Score = 312 (114.9 bits), Expect = 8.4e-28, P = 8.4e-28
 Identities = 59/95 (62%), Positives = 73/95 (76%)

Query:     1 MISESDLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSY 60
             MI E DL R+YL KWD  YL TYR LD+LQ+VFY SN  REA VE+C DEYVQ+MTFDSY
Sbjct:   370 MIDEGDL-RKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSY 428

Query:    61 LYKKLAEGSRFQDVKMVMKTIGSFMRCNIVGREME 95
             LYK++A GS  +D+K+ + TIGS +R N + RE+E
Sbjct:   429 LYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIE 463


>UNIPROTKB|Q9ZS34 [details] [associations]
            symbol:CHLP "Geranylgeranyl diphosphate reductase,
            chloroplastic" species:4097 "Nicotiana tabacum" [GO:0010189
            "vitamin E biosynthetic process" evidence=IMP] [GO:0015995
            "chlorophyll biosynthetic process" evidence=IMP] [GO:0033385
            "geranylgeranyl diphosphate metabolic process" evidence=IMP]
            [GO:0033521 "phytyl diphosphate biosynthetic process" evidence=IMP]
            [GO:0045550 "geranylgeranyl reductase activity" evidence=NAS]
            InterPro:IPR003042 InterPro:IPR010253 InterPro:IPR011774
            InterPro:IPR011777 InterPro:IPR023753 Pfam:PF07992 PRINTS:PR00420
            UniPathway:UPA00160 UniPathway:UPA00668 InterPro:IPR016040
            GO:GO:0009507 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0033385
            GO:GO:0045550 GO:GO:0015979 GO:GO:0016628 GO:GO:0015995
            GO:GO:0010189 TIGRFAMs:TIGR02023 TIGRFAMs:TIGR02028
            TIGRFAMs:TIGR02032 EMBL:AJ007789 ProteinModelPortal:Q9ZS34
            BioCyc:MetaCyc:MONOMER-14870 GO:GO:0033521 Uniprot:Q9ZS34
        Length = 464

 Score = 306 (112.8 bits), Expect = 4.1e-27, P = 4.1e-27
 Identities = 57/95 (60%), Positives = 73/95 (76%)

Query:     1 MISESDLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSY 60
             M+ ESDL R+YL KWD  Y  TY+ LD+LQ+VFY SN  REA VE+C DEYVQ+MTFDSY
Sbjct:   367 MVDESDL-RKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSY 425

Query:    61 LYKKLAEGSRFQDVKMVMKTIGSFMRCNIVGREME 95
             LYKK+A G+  +D+K+ + TIGS +R N + REM+
Sbjct:   426 LYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMD 460


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.141   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101       101   0.00091  102 3  11 22  0.47    29
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  515 (55 KB)
  Total size of DFA:  110 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  11.07u 0.08s 11.15t   Elapsed:  00:00:10
  Total cpu time:  11.07u 0.08s 11.15t   Elapsed:  00:00:11
  Start:  Fri May 10 18:01:15 2013   End:  Fri May 10 18:01:26 2013

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