BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034224
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KWB|A Chain A, Minimal Constraint Solution Nmr Structure Of
           Translationally Controlled Tumor Protein (Tctp) From
           C.Elegans, Northeast S Genomics Consortium Target Wr73
 pdb|2LOY|A Chain A, Refined Miminal Constraint Solution Nmr Structure Of
           Translationally- Controlled Tumor Protein (Tctp) From
           Caenorhabditis Elegans, Northeast Structural Genomics
           Consortium Target Wr73
          Length = 189

 Score = 28.5 bits (62), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 12/80 (15%)

Query: 32  VFYGSNVGREALVELCG-DEYVQRMTFDSYLYKKLAEGSRFQDVKMVMKTIGSFMRCNIV 90
           V  GSN   E   E  G DE+V+R   D  L  KL E + ++D  M    I  FM+ N++
Sbjct: 43  VLAGSNPSAEEGAEDDGSDEHVER-GIDIVLNHKLVEMNCYEDASMFKAYIKKFMK-NVI 100

Query: 91  GR---------EMEAFKFKV 101
                      +++AFK K+
Sbjct: 101 DHMEKNNRDKADVDAFKKKI 120


>pdb|1K25|A Chain A, Pbp2x From A Highly Penicillin-Resistant Streptococcus
           Pneumoniae Clinical Isolate
 pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistant Streptococcus
           Pneumoniae Clinical Isolate
 pdb|1K25|C Chain C, Pbp2x From A Highly Penicillin-Resistant Streptococcus
           Pneumoniae Clinical Isolate
 pdb|1K25|D Chain D, Pbp2x From A Highly Penicillin-Resistant Streptococcus
           Pneumoniae Clinical Isolate
          Length = 685

 Score = 28.5 bits (62), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 3   SESDLKREYLRKWD-DEYLMTYRFLDLLQRVFYGSNVGREALVELCGD----EYVQRMTF 57
           SE  +     R WD +E L T   +  LQ   + SNVG   L +  GD    +Y++R  F
Sbjct: 297 SELKIADATTRDWDVNEGLTTGGMMTFLQGFAHSSNVGMSLLEQKMGDATWLDYLKRFKF 356


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,790,919
Number of Sequences: 62578
Number of extensions: 97526
Number of successful extensions: 243
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 3
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)