BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034224
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CA67|CHLP_ARATH Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis
thaliana GN=CHLP PE=1 SV=1
Length = 467
Score = 126 bits (316), Expect = 4e-29, Method: Composition-based stats.
Identities = 59/95 (62%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Query: 1 MISESDLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSY 60
MI E DL R+YL KWD YL TYR LD+LQ+VFY SN REA VE+C DEYVQ+MTFDSY
Sbjct: 370 MIDEGDL-RKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSY 428
Query: 61 LYKKLAEGSRFQDVKMVMKTIGSFMRCNIVGREME 95
LYK++A GS +D+K+ + TIGS +R N + RE+E
Sbjct: 429 LYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIE 463
>sp|Q9ZS34|CHLP_TOBAC Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana
tabacum GN=CHLP PE=2 SV=1
Length = 464
Score = 124 bits (310), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/95 (60%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Query: 1 MISESDLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSY 60
M+ ESDL R+YL KWD Y TY+ LD+LQ+VFY SN REA VE+C DEYVQ+MTFDSY
Sbjct: 367 MVDESDL-RKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSY 425
Query: 61 LYKKLAEGSRFQDVKMVMKTIGSFMRCNIVGREME 95
LYKK+A G+ +D+K+ + TIGS +R N + REM+
Sbjct: 426 LYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMD 460
>sp|Q6Z2T6|CHLP_ORYSJ Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa
subsp. japonica GN=CHLP PE=2 SV=1
Length = 463
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MISESDLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSY 60
M+ ESDL+R YL ++D Y TY+ LD+LQ+VFY SN REA VE+C D+YVQRMTFDSY
Sbjct: 366 MVEESDLRR-YLAEFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSY 424
Query: 61 LYKKLAEGSRFQDVKMVMKTIGSFMRCNIVGREME 95
LYK++ G+ D+K+ + TIGS +R + REME
Sbjct: 425 LYKRVVPGNPLDDIKLAVNTIGSLVRATALRREME 459
>sp|Q55087|CHLP_SYNY3 Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=chlP PE=3 SV=1
Length = 407
Score = 92.8 bits (229), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 3 SESDLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSYLY 62
+E+DLK +Y+++WD Y TY LD+LQRVFY ++ REA VE+C D VQ++TFDSYLY
Sbjct: 319 TEADLK-QYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLY 377
Query: 63 KKLAEGSRFQDVKMVMKTIGSFMRCN 88
K + + +K+ KTIGS +R N
Sbjct: 378 KTVVPANPLVQMKITAKTIGSLLRGN 403
>sp|P26172|BCHP_RHOCB Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchP PE=3
SV=1
Length = 391
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 18 EYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRFQDVKMV 77
E+ ++ L ++Q +Y S+ RE V LC D VQRMTF+SY+ KK+ + +++K+
Sbjct: 316 EHGTVFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIG 375
Query: 78 MKTIG 82
K +
Sbjct: 376 FKNLA 380
>sp|Q00156|VG64_ICHVA Uncharacterized protein ORF64 OS=Ictalurid herpesvirus 1 (strain
Auburn) GN=ORF64 PE=4 SV=1
Length = 514
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 6 DLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVE 45
D R R D+ L +RF +L RVF+G G +AL+E
Sbjct: 91 DFDRSLKRLVDEGVLGMFRFNRMLTRVFFGYATGDDALIE 130
>sp|Q2N9K5|SYA_ERYLH Alanine--tRNA ligase OS=Erythrobacter litoralis (strain HTCC2594)
GN=alaS PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 17 DEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRFQDVKM 76
++Y R L + +R S GR VELCG +V R T D L++ ++E + V+
Sbjct: 648 EKYGEEVRVLSMGRR----SKEGRNYSVELCGGTHV-RATGDIQLFRIISESAVSSGVRR 702
Query: 77 VMKTIGSFMRCNIVGREMEAFK 98
+ G R +V RE EA K
Sbjct: 703 IEALTGDAARQWLVRRE-EALK 723
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,353,547
Number of Sequences: 539616
Number of extensions: 1203940
Number of successful extensions: 3272
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3266
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)