Query 034224
Match_columns 101
No_of_seqs 106 out of 111
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 19:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oz2_A Digeranylgeranylglycero 99.0 4.8E-10 1.6E-14 80.9 5.9 67 3-71 321-388 (397)
2 3cgv_A Geranylgeranyl reductas 97.5 0.00021 7.2E-09 52.3 6.6 66 3-70 321-387 (397)
3 3atr_A Conserved archaeal prot 66.0 5.2 0.00018 30.6 3.5 51 4-55 327-380 (453)
4 1yo3_A Dynein light chain 1; s 55.1 5.5 0.00019 26.7 1.7 21 2-23 46-67 (102)
5 2fv2_A RCD1 required for cell 42.6 55 0.0019 25.8 5.9 57 20-86 71-131 (268)
6 3rjs_A Dynein light chain moto 34.8 20 0.00067 23.1 1.9 21 2-23 33-54 (89)
7 3e1t_A Halogenase; flavoprotei 34.4 57 0.0019 25.4 4.7 23 6-29 343-365 (512)
8 4ds1_A Dynein light chain 1, c 31.8 23 0.0008 23.3 1.9 21 2-23 41-62 (97)
9 2i9c_A Hypothetical protein RP 29.6 79 0.0027 22.1 4.4 68 12-86 34-101 (123)
10 2kzs_A Death-associated protei 28.9 16 0.00055 25.1 0.7 41 35-76 12-53 (94)
11 2xvc_A ESCRT-III, SSO0910; cel 28.1 1.1E+02 0.0037 19.4 4.4 30 1-31 9-51 (59)
12 1cfr_A CFR10I, restriction end 25.5 27 0.00092 28.0 1.5 25 39-63 17-41 (285)
13 1b72_B Protein (PBX1); homeodo 25.0 1.2E+02 0.0039 18.4 4.2 42 25-86 12-60 (87)
14 1by1_A Protein (PIX); RHO-GTPa 24.4 1.7E+02 0.0059 20.0 6.1 51 25-82 113-163 (209)
15 2cuf_A FLJ21616 protein; homeo 24.1 53 0.0018 20.6 2.5 56 26-86 19-78 (95)
16 2juc_A PRE-mRNA-splicing facto 22.0 29 0.001 21.7 0.9 14 36-49 46-59 (59)
No 1
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.00 E-value=4.8e-10 Score=80.94 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCchhHHHHHhhhCCcchhhhhhhhhhhhhhcCCChh
Q 034224 3 SESDLKREYLRKWDDEYLMTY-RFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRF 71 (101)
Q Consensus 3 te~~l~~~Ylkrf~k~yg~tf-~vL~iLQ~v~Y~sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~~~p~ 71 (101)
+++.|+ .|+++|.+.++.-+ +.+.++|.+++.||..+++|+++|.|+++|.+||++|| |+++...|-
T Consensus 321 ~~~~L~-~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~~~~p~ 388 (397)
T 3oz2_A 321 SPQMMQ-KYEKLIKERFERKHLRNWVAKEKLAMLSDDTLDKLVDIVSEQVLTTISVEAIL-KAIAEKYPE 388 (397)
T ss_dssp SHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCBCSCSHHHHH-HHHHHHCGG
T ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhHHHhhhcCHHHHH-HHHHHHCHH
Confidence 456677 89999888888755 44556778888899999999999999999999999999 778777774
No 2
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=97.53 E-value=0.00021 Score=52.25 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CchhHHHHHhhhCCcchhhhhhhhhhhhhhcCCCh
Q 034224 3 SESDLKREYLRKWDDEYLMTYRFLDLLQRVFYG-SNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSR 70 (101)
Q Consensus 3 te~~l~~~Ylkrf~k~yg~tf~vL~iLQ~v~Y~-sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~~~p 70 (101)
+++.|. .|.++|.+.++..+.....+++++|+ +|..+++|++.|.++++++++....+ +++.+.+|
T Consensus 321 ~~~~l~-~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p 387 (397)
T 3cgv_A 321 SPQMMQ-KYEKLIKERFERKHLRNWVAKEKLAMLSDDTLDKLVDIVSEQVLTTISVEAIL-KAIAEKYP 387 (397)
T ss_dssp SHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSCBCSCSHHHHH-HHHHHHCC
T ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCccchhhccHHHHH-HHHHHhCH
Confidence 345666 99999999999999999999999988 78889999999999999999554432 33343333
No 3
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=66.04 E-value=5.2 Score=30.59 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CchhHHHHHh--hhCCcchhhh
Q 034224 4 ESDLKREYLRKWDDEYLMTYRFLDLLQRVFYG-SNVGREALVE--LCGDEYVQRM 55 (101)
Q Consensus 4 e~~l~~~Ylkrf~k~yg~tf~vL~iLQ~v~Y~-sd~~RE~FVe--mC~D~dVQrl 55 (101)
++-|. .|.+++.+.++..+...+.+++++.. +|..-.+|+. +..++++.++
T Consensus 327 ~~~L~-~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 380 (453)
T 3atr_A 327 ASGLW-DMNICYVNEYGAKQASLDIFRRFLQKLSNDDINYGMKKKIIKEEDLLEA 380 (453)
T ss_dssp TTTTT-HHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHcCCChHHHHHH
Confidence 34566 99999999999999999999999986 5666666766 4567777665
No 4
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=55.09 E-value=5.5 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHH-HHHHhhhhHH
Q 034224 2 ISESDLKREYLR-KWDDEYLMTY 23 (101)
Q Consensus 2 ~te~~l~~~Ylk-rf~k~yg~tf 23 (101)
.+|.|+- .|+| .||++||+++
T Consensus 46 ~~ekdiA-~~IK~~fDkkyG~~W 67 (102)
T 1yo3_A 46 NVEKDIA-AHIKKEFDRKYDPTW 67 (102)
T ss_dssp SSHHHHH-HHHHHHHHHHHCSCE
T ss_pred CcHHHHH-HHHHHHHhhhcCCCC
Confidence 3577887 6776 7999999864
No 5
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=42.62 E-value=55 Score=25.80 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHhcCchhHHHHHhhhCCcchhhhhhhhhhh---hhhcCCChhHHHHHHH-HHHHHhhh
Q 034224 20 LMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSYLY---KKLAEGSRFQDVKMVM-KTIGSFMR 86 (101)
Q Consensus 20 g~tf~vL~iLQ~v~Y~sd~~RE~FVemC~D~dVQrlTfdSYly---K~lv~~~p~~~~ki~~-k~i~~L~r 86 (101)
-.|..+|.+||-+- .++..|..|+.- -+-.||| ++....+|.+++|++. .-||+|++
T Consensus 71 nRVcnaLaLlQcvA-shpetr~~Fl~a---------~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK 131 (268)
T 2fv2_A 71 NRVCNALALLQCVA-SHPETRSAFLAA---------HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVK 131 (268)
T ss_dssp HHHHHHHHHHHHHH-HCTTTHHHHHHT---------TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHH-cCcchhhHHHHc---------cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhc
Confidence 36789999999999 577889999864 4677887 5667889999999985 46788886
No 6
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=34.78 E-value=20 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHH-HHHHhhhhHH
Q 034224 2 ISESDLKREYLR-KWDDEYLMTY 23 (101)
Q Consensus 2 ~te~~l~~~Ylk-rf~k~yg~tf 23 (101)
++|.|+- .|+| .||++||++.
T Consensus 33 ~~ek~iA-~~IK~~fD~kyg~~W 54 (89)
T 3rjs_A 33 NIEKDIA-AFIKKEFDRKHNPTW 54 (89)
T ss_dssp CSHHHHH-HHHHHHHHHHHCSCC
T ss_pred CcHHHHH-HHHHHHHhcccCCCC
Confidence 3567777 5665 7899999864
No 7
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=34.38 E-value=57 Score=25.42 Aligned_cols=23 Identities=30% Similarity=0.545 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Q 034224 6 DLKREYLRKWDDEYLMTYRFLDLL 29 (101)
Q Consensus 6 ~l~~~Ylkrf~k~yg~tf~vL~iL 29 (101)
.|. .|.+++.+.++.++.++..+
T Consensus 343 aL~-~Ye~~~~~~~~~~~~~~~~~ 365 (512)
T 3e1t_A 343 CFE-EFERRYRREYGNFYQFLVAF 365 (512)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344 89999999998887766544
No 8
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=31.81 E-value=23 Score=23.25 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHH-HHHHhhhhHH
Q 034224 2 ISESDLKREYLR-KWDDEYLMTY 23 (101)
Q Consensus 2 ~te~~l~~~Ylk-rf~k~yg~tf 23 (101)
++|.|+- .|+| .||++||++.
T Consensus 41 ~~ek~iA-~~IK~~fDkkyG~~W 62 (97)
T 4ds1_A 41 QLERDIA-GTVKKQLDVKYGNTW 62 (97)
T ss_dssp SSHHHHH-HHHHHHHHHHHCSCE
T ss_pred CCHHHHH-HHHHHHHhCccCCCC
Confidence 4677777 6655 7899999864
No 9
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=29.61 E-value=79 Score=22.08 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=45.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCchhHHHHHhhhCCcchhhhhhhhhhhhhhcCCChhHHHHHHHHHHHHhhh
Q 034224 12 LRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRFQDVKMVMKTIGSFMR 86 (101)
Q Consensus 12 lkrf~k~yg~tf~vL~iLQ~v~Y~sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~~~p~~~~ki~~k~i~~L~r 86 (101)
.+++.+.|+.+..+.+-|+. ++...|+++..+-.++++|=--+-+ +-...-.|-.-.+ .+..|++.-+
T Consensus 34 ~~~~Nr~~~kl~~~~~eLk~---r~Gd~R~aLl~Ll~H~n~~VRl~AA---~~~L~~~p~~A~~-vLe~ia~~~~ 101 (123)
T 2i9c_A 34 ISRFNRLFGVMAEIADELKA---RDGDQRTALLSLFEYPNMQVRLQAA---KLTLAVAPVKARE-QLEAIVSSKW 101 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---STTCGGGGGGGGGGSSCHHHHHHHH---HTTTTTCHHHHHH-HHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHhCCCccHHHHHH---HHHHhhChHHHHH-HHHHHHhCCC
Confidence 46788999999999999985 3344999999999999999666655 2222233433333 3455555533
No 10
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS death-domain associated prote rassf1C interacting domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Probab=28.88 E-value=16 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=26.6
Q ss_pred cCchhHHHHHhhhCCcchhhh-hhhhhhhhhhcCCChhHHHHH
Q 034224 35 GSNVGREALVELCGDEYVQRM-TFDSYLYKKLAEGSRFQDVKM 76 (101)
Q Consensus 35 ~sd~~RE~FVemC~D~dVQrl-TfdSYlyK~lv~~~p~~~~ki 76 (101)
.|++.=|.||+.|.- .-|.- ----||.++.++|.|.----.
T Consensus 12 enekLfeEFv~~C~~-~t~d~PeV~~fL~~r~~kas~~fL~Sv 53 (94)
T 2kzs_A 12 ENEKLFEEFLELCKM-QTADHPEVVPFLYNRQQRAHSLFLASA 53 (94)
T ss_dssp HHHHHHHHHHHHHHH-HCTTCTTHHHHHHHHHHTBCHHHHTSH
T ss_pred hhHHHHHHHHHHHHh-cccCCcHHHHHHHHHhccCCchhhhHH
Confidence 366778999999972 11110 012489999999999744333
No 11
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=28.06 E-value=1.1e+02 Score=19.37 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHH---------HHHHhhh----hHHHHHHHHHH
Q 034224 1 MISESDLKREYLR---------KWDDEYL----MTYRFLDLLQR 31 (101)
Q Consensus 1 ~~te~~l~~~Ylk---------rf~k~yg----~tf~vL~iLQ~ 31 (101)
|+||++|- +|++ .|-++|| .||.+|.-||.
T Consensus 9 ~~~e~~lL-~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~ 51 (59)
T 2xvc_A 9 MITERELL-DYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKN 51 (59)
T ss_dssp CCCHHHHH-HHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hccHHHHH-HHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 68999999 8876 5888888 57888877764
No 12
>1cfr_A CFR10I, restriction endonuclease; restriction enzyme; 2.15A {Citrobacter freundii} SCOP: c.52.1.7
Probab=25.55 E-value=27 Score=28.05 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.0
Q ss_pred hHHHHHhhhCCcchhhhhhhhhhhh
Q 034224 39 GREALVELCGDEYVQRMTFDSYLYK 63 (101)
Q Consensus 39 ~RE~FVemC~D~dVQrlTfdSYlyK 63 (101)
-+-+||+||+....+.++|..||-|
T Consensus 17 ~~~~~~~~~~~~~i~~~~~~e~L~~ 41 (285)
T 1cfr_A 17 SAIAFVAYASHIDINTTEFSKVLSG 41 (285)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCccHHHHHHH
Confidence 3679999999999999999999854
No 13
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=25.03 E-value=1.2e+02 Score=18.44 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=28.0
Q ss_pred HHHHHHHHH-------hcCchhHHHHHhhhCCcchhhhhhhhhhhhhhcCCChhHHHHHHHHHHHHhhh
Q 034224 25 FLDLLQRVF-------YGSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRFQDVKMVMKTIGSFMR 86 (101)
Q Consensus 25 vL~iLQ~v~-------Y~sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~~~p~~~~ki~~k~i~~L~r 86 (101)
.+.+|..+| |-+...|+.+.+.|. =+..+|++||.|=-.-.+
T Consensus 12 q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~--------------------l~~~qV~~WFqNrR~r~k 60 (87)
T 1b72_B 12 ATEILNEYFYSHLSNPYPSEEAKEELAKKCG--------------------ITVSQVSNWFGNKRIRYK 60 (87)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHHHHHHT--------------------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHC--------------------cCHHHHHHHHHHHHHHhh
Confidence 467888888 666677777766664 234578888877654433
No 14
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=24.43 E-value=1.7e+02 Score=19.98 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCchhHHHHHhhhCCcchhhhhhhhhhhhhhcCCChhHHHHHHHHHHH
Q 034224 25 FLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRFQDVKMVMKTIG 82 (101)
Q Consensus 25 vL~iLQ~v~Y~sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~~~p~~~~ki~~k~i~ 82 (101)
.+.+++.. +..=.+|++-|..+...++++.|||-|=+. -+..-.+++++|-
T Consensus 113 a~~~l~~~----~~~f~~fl~~~~~~~~~~l~L~s~Li~PvQ---Ri~rY~LLL~~Ll 163 (209)
T 1by1_A 113 AVNVLTEH----SEELGEFMETKGASSPGILVLTTGLSKPFM---RLDKYPTLLKELE 163 (209)
T ss_dssp HHHHHHHH----TTTHHHHTTTTCCCSSTTTHHHHHTTSTTT---GGGTHHHHHHHHH
T ss_pred HHHHHHHh----CHHHHHHHHHhcCCCCCcCCHHHHhhHHHH---HHhHHHHHHHHHH
Confidence 34445544 344467899998888889999999976433 3444455555554
No 15
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.10 E-value=53 Score=20.63 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=31.6
Q ss_pred HHHHHHHH----hcCchhHHHHHhhhCCcchhhhhhhhhhhhhhcCCChhHHHHHHHHHHHHhhh
Q 034224 26 LDLLQRVF----YGSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRFQDVKMVMKTIGSFMR 86 (101)
Q Consensus 26 L~iLQ~v~----Y~sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~~~p~~~~ki~~k~i~~L~r 86 (101)
|.+|..+| |-+-..||...+-|.+. +|+--.+.= --..=+..++++||.|--.-.+
T Consensus 19 l~~Le~~F~~~~yP~~~~r~~lA~~l~~~-~~~~~~~~~----~~~~ls~~qV~~WFqNRR~k~k 78 (95)
T 2cuf_A 19 LAVMESYFNENQYPDEAKREEIANACNAV-IQKPGKKLS----DLERVTSLKVYNWFANRRKEIK 78 (95)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHH-HCCTTCCCC----TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHCch-hhccccccc----ccCcCCHHHHHHHHHHHHHHHH
Confidence 45565555 55567889999888754 443110000 0011235689999988655443
No 16
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=21.96 E-value=29 Score=21.65 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.5
Q ss_pred CchhHHHHHhhhCC
Q 034224 36 SNVGREALVELCGD 49 (101)
Q Consensus 36 sd~~RE~FVemC~D 49 (101)
+.+|||.|-+.|++
T Consensus 46 ~~~R~e~F~ew~r~ 59 (59)
T 2juc_A 46 DTVRESLFEEWCGE 59 (59)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhC
Confidence 35789999999985
Done!