Query 034224
Match_columns 101
No_of_seqs 106 out of 111
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 19:04:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034224.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034224hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 51.3 2.4 0.00018 24.1 1.0 14 49-62 8-21 (42)
2 d1by1a_ a.87.1.1 (A:) beta-pix 46.8 32 0.0024 22.1 8.2 46 35-83 119-164 (209)
3 d1txda1 a.87.1.1 (A:766-999) R 43.3 11 0.0008 24.5 3.5 55 25-83 129-184 (234)
4 d1qled_ f.23.8.1 (D:) Bacteria 41.3 4.3 0.00032 23.0 1.0 14 49-62 9-22 (43)
5 d1ofcx1 a.4.1.3 (X:799-850) SA 37.9 11 0.00083 21.5 2.5 17 3-20 33-49 (52)
6 d2i9ca1 a.118.1.25 (A:3-123) H 31.8 30 0.0022 22.5 4.2 45 12-59 32-76 (121)
7 d1foea1 a.87.1.1 (A:1034-1239) 30.3 28 0.002 21.8 3.7 49 34-85 126-174 (206)
8 d1oh0a_ d.17.4.3 (A:) Delta-5- 29.3 21 0.0015 20.5 2.8 34 1-51 1-34 (125)
9 d2op5a1 d.58.4.22 (A:4-115) Hy 28.0 16 0.0012 22.8 2.3 20 2-22 15-34 (112)
10 d2hg7a1 d.186.2.1 (A:1-60) Pha 26.5 18 0.0013 21.6 2.1 8 1-8 40-47 (60)
11 d1qyca_ c.2.1.2 (A:) Phenylcou 24.5 12 0.00086 23.6 1.0 43 22-64 259-306 (307)
12 d2cufa1 a.4.1.1 (A:8-89) Homeo 23.6 59 0.0043 18.9 4.2 54 25-85 11-70 (82)
13 d2od6a1 d.58.4.22 (A:1-109) Hy 22.6 47 0.0034 20.6 3.7 16 2-18 15-30 (109)
14 d1oi1a2 b.34.9.3 (A:140-243) S 21.9 13 0.00097 23.0 0.9 15 56-70 1-15 (104)
15 d1omra_ a.39.1.5 (A:) Recoveri 20.8 59 0.0043 20.1 4.0 77 3-80 23-107 (201)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=51.32 E-value=2.4 Score=24.06 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=12.5
Q ss_pred Ccchhhhhhhhhhh
Q 034224 49 DEYVQRMTFDSYLY 62 (101)
Q Consensus 49 D~dVQrlTfdSYly 62 (101)
|-.||.=|||.+|.
T Consensus 8 Di~vQEKTF~gFik 21 (42)
T d1m56d_ 8 DITQQEKTFAGFVR 21 (42)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 77899999999985
No 2
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.82 E-value=32 Score=22.15 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=33.3
Q ss_pred cCchhHHHHHhhhCCcchhhhhhhhhhhhhhcCCChhHHHHHHHHHHHH
Q 034224 35 GSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRFQDVKMVMKTIGS 83 (101)
Q Consensus 35 ~sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~~~p~~~~ki~~k~i~~ 83 (101)
..+..=.+|.+.|.-+.-++++++|||-| |..-+..-.+++++|..
T Consensus 119 k~~~~~~~f~~~~~~~~~~~~~l~~~L~~---PvQRl~rY~LLL~~Llk 164 (209)
T d1by1a_ 119 EHSEELGEFMETKGASSPGILVLTTGLSK---PFMRLDKYPTLLKELER 164 (209)
T ss_dssp HHTTTHHHHTTTTCCCSSTTTHHHHHTTS---TTTGGGTHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhhcccccCCHHHHhhh---HHHHHHHHHHHHHHHHH
Confidence 34555678889998888899999999965 44445555777776543
No 3
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=43.32 E-value=11 Score=24.50 Aligned_cols=55 Identities=9% Similarity=0.223 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCchhHHHHHhhh-CCcchhhhhhhhhhhhhhcCCChhHHHHHHHHHHHH
Q 034224 25 FLDLLQRVFYGSNVGREALVELC-GDEYVQRMTFDSYLYKKLAEGSRFQDVKMVMKTIGS 83 (101)
Q Consensus 25 vL~iLQ~v~Y~sd~~RE~FVemC-~D~dVQrlTfdSYlyK~lv~~~p~~~~ki~~k~i~~ 83 (101)
.+.+++..--. ++.=.+|++.| .++..++++++|+|.+ |..-+....+++++|..
T Consensus 129 ~~~~l~~~~~~-~~~f~~~~~~~~~~~~~~~~~l~~~L~~---PvqRl~kY~llL~~llk 184 (234)
T d1txda1 129 ALEMIKSRQKK-DSRFQTFVQDAESNPLCRRLQLKDIIPT---QMQRLTKYPLLLDNIAK 184 (234)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHSGGGTTCCHHHHTTH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHccccccCCCHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 34556654333 34434555544 7899999999999986 44445566677776643
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=41.27 E-value=4.3 Score=23.04 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.5
Q ss_pred Ccchhhhhhhhhhh
Q 034224 49 DEYVQRMTFDSYLY 62 (101)
Q Consensus 49 D~dVQrlTfdSYly 62 (101)
|-.||.=|||.+|.
T Consensus 9 Di~vQEkTF~gFi~ 22 (43)
T d1qled_ 9 DIRHQQATFAGFIK 22 (43)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 67899999999985
No 5
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=37.90 E-value=11 Score=21.52 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 034224 3 SESDLKREYLRKWDDEYL 20 (101)
Q Consensus 3 te~~l~~~Ylkrf~k~yg 20 (101)
|++|++ .|.+-|++.|-
T Consensus 33 t~eEV~-~Y~~vFw~ry~ 49 (52)
T d1ofcx1 33 TPEEVI-EYNAVFWERCT 49 (52)
T ss_dssp CHHHHH-HHHHHHHHHGG
T ss_pred CHHHHH-HHHHHHHHHHH
Confidence 678888 99999999874
No 6
>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=31.81 E-value=30 Score=22.54 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=37.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCchhHHHHHhhhCCcchhhhhhhh
Q 034224 12 LRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEYVQRMTFDS 59 (101)
Q Consensus 12 lkrf~k~yg~tf~vL~iLQ~v~Y~sd~~RE~FVemC~D~dVQrlTfdS 59 (101)
.+++.|.|..+..+.+-|++ ++...|++|..+-..+++|=--|-+
T Consensus 32 ~~~~NR~~~kl~~~~~eLk~---~~g~~R~aLl~Ll~h~n~~VRl~AA 76 (121)
T d2i9ca1 32 ISRFNRLFGVMAEIADELKA---RDGDQRTALLSLFEYPNMQVRLQAA 76 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---STTCGGGGGGGGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCccHHHHHHHHHHCCCHHHHHHHH
Confidence 36788889999999998887 5788999999999999999655544
No 7
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.26 E-value=28 Score=21.83 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=35.4
Q ss_pred hcCchhHHHHHhhhCCcchhhhhhhhhhhhhhcCCChhHHHHHHHHHHHHhh
Q 034224 34 YGSNVGREALVELCGDEYVQRMTFDSYLYKKLAEGSRFQDVKMVMKTIGSFM 85 (101)
Q Consensus 34 Y~sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~~~p~~~~ki~~k~i~~L~ 85 (101)
..++..=++|++.|.-+.-++++|+|||.+=+. -+..-.+++++|....
T Consensus 126 ~~~~~~f~~f~~~~~~~~~~~~~l~~~L~~Pvq---Ri~rY~llL~~l~k~t 174 (206)
T d1foea1 126 AKTDTAFKAFLDAQNPRQQHSSTLESYLIKPIQ---RVLKYPLLLRELFALT 174 (206)
T ss_dssp TTTCHHHHHHHHHHCTTCCGGGSHHHHTTHHHH---HHTTHHHHHHHHHHTS
T ss_pred HhcChHHHHHHHHHhHhccCCCCHHHHHhhHHH---HHHHHHHHHHHHHHhC
Confidence 356777788999998888899999999976332 2445566777665544
No 8
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=29.32 E-value=21 Score=20.46 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCchhHHHHHhhhCCcc
Q 034224 1 MISESDLKREYLRKWDDEYLMTYRFLDLLQRVFYGSNVGREALVELCGDEY 51 (101)
Q Consensus 1 ~~te~~l~~~Ylkrf~k~yg~tf~vL~iLQ~v~Y~sd~~RE~FVemC~D~d 51 (101)
|||.++++ +-.++|...+ +..--|+++++.++.-
T Consensus 1 mpt~e~~~-~~v~~y~~a~----------------~~~D~d~~~~l~~~d~ 34 (125)
T d1oh0a_ 1 LPTAQEVQ-GLMARYIELV----------------DVGDIEAIVQMYADDA 34 (125)
T ss_dssp CCCHHHHH-HHHHHHHHHH----------------HHTCHHHHHHHEEEEE
T ss_pred CCCHHHHH-HHHHHHHHHH----------------HcCCHHHHHHHhCCCE
Confidence 79999999 6666666554 3344566777666553
No 9
>d2op5a1 d.58.4.22 (A:4-115) Hypothetical protein GOS_7213774 {environmental samples}
Probab=27.98 E-value=16 Score=22.85 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHhhhhH
Q 034224 2 ISESDLKREYLRKWDDEYLMT 22 (101)
Q Consensus 2 ~te~~l~~~Ylkrf~k~yg~t 22 (101)
|||+|+. .|+++|.+-+++-
T Consensus 15 ~Se~dme-l~~~~~e~~~~~~ 34 (112)
T d2op5a1 15 TSENELE-LFLKSLDEVWSED 34 (112)
T ss_dssp SSHHHHH-HHHTTHHHHSCHH
T ss_pred CCHHHHH-HHHHHHHHHHhHH
Confidence 8999999 9999999877764
No 10
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=26.54 E-value=18 Score=21.61 Aligned_cols=8 Identities=13% Similarity=0.518 Sum_probs=7.3
Q ss_pred CCCHHHHH
Q 034224 1 MISESDLK 8 (101)
Q Consensus 1 ~~te~~l~ 8 (101)
+|||++|+
T Consensus 40 ~PTe~EL~ 47 (60)
T d2hg7a1 40 LPTQAELE 47 (60)
T ss_dssp CCCHHHHH
T ss_pred CCcHHHHH
Confidence 59999999
No 11
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}
Probab=24.50 E-value=12 Score=23.57 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhC-----Ccchhhhhhhhhhhhh
Q 034224 22 TYRFLDLLQRVFYGSNVGREALVELCG-----DEYVQRMTFDSYLYKK 64 (101)
Q Consensus 22 tf~vL~iLQ~v~Y~sd~~RE~FVemC~-----D~dVQrlTfdSYlyK~ 64 (101)
.-..+.+.+..||.+|...+.+...+. -||++-.|+|.||.+-
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~t~ee~l~~~ 306 (307)
T d1qyca_ 259 ANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNF 306 (307)
T ss_dssp HHHHHHHHHHHHTTCTTTSSCCCTTEEEHHHHCTTCCCCCHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccccccccCcchhhHHHhCCCCCcCcHHHHHHHh
Confidence 345566778888887655443322111 2678888999999764
No 12
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.58 E-value=59 Score=18.86 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHHH----hcCchhHHHHHhhhCCcchhhhhhhhhhhhhhcC--CChhHHHHHHHHHHHHhh
Q 034224 25 FLDLLQRVF----YGSNVGREALVELCGDEYVQRMTFDSYLYKKLAE--GSRFQDVKMVMKTIGSFM 85 (101)
Q Consensus 25 vL~iLQ~v~----Y~sd~~RE~FVemC~D~dVQrlTfdSYlyK~lv~--~~p~~~~ki~~k~i~~L~ 85 (101)
-|.+|..+| |=|...||...+-|.-. +++.+.+ +.+ +=+-.++++||.|=-.-.
T Consensus 11 Ql~~LE~~F~~n~yP~~~~R~~LA~~~~~~-~~~~~~~------~~~~~~l~~~~V~vWFqNRR~k~ 70 (82)
T d2cufa1 11 CLAVMESYFNENQYPDEAKREEIANACNAV-IQKPGKK------LSDLERVTSLKVYNWFANRRKEI 70 (82)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-HCCTTCC------CCTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhccc-ccccccc------chhccCCCHHHHHHHHhhhHHHH
Confidence 466777777 77788999998888521 1111100 101 113358999999865433
No 13
>d2od6a1 d.58.4.22 (A:1-109) Hypothetical protein GOS_2359375 {environmental samples}
Probab=22.62 E-value=47 Score=20.60 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHHh
Q 034224 2 ISESDLKREYLRKWDDE 18 (101)
Q Consensus 2 ~te~~l~~~Ylkrf~k~ 18 (101)
|||+|+. .|+++|.+.
T Consensus 15 ~se~dme-l~~~~~e~~ 30 (109)
T d2od6a1 15 INDVDME-LFIDAVEKT 30 (109)
T ss_dssp SSHHHHH-HHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHHH
Confidence 8999999 999999984
No 14
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.95 E-value=13 Score=23.00 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=11.5
Q ss_pred hhhhhhhhhhcCCCh
Q 034224 56 TFDSYLYKKLAEGSR 70 (101)
Q Consensus 56 TfdSYlyK~lv~~~p 70 (101)
+|+.||-|++..+.+
T Consensus 1 ~W~~yL~~t~~~a~~ 15 (104)
T d1oi1a2 1 SWPMFLLETLNGSEM 15 (104)
T ss_dssp CHHHHHHHHHTTCCB
T ss_pred CHHHHHHHHhCCCEE
Confidence 599999998765544
No 15
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.76 E-value=59 Score=20.12 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHH--hcCchhHHHHHhhhCCcchhhhhhhhhhh--hhhcCCChhHHH
Q 034224 3 SESDLKREYLRKWDDEYLMTYR----FLDLLQRVF--YGSNVGREALVELCGDEYVQRMTFDSYLY--KKLAEGSRFQDV 74 (101)
Q Consensus 3 te~~l~~~Ylkrf~k~yg~tf~----vL~iLQ~v~--Y~sd~~RE~FVemC~D~dVQrlTfdSYly--K~lv~~~p~~~~ 74 (101)
|+.+|. ...+.|++..+.=+- +..+|..++ ..++...++.-..+....-..++|+.++. ..+.+.++-..+
T Consensus 23 ~~~ei~-~l~~~F~~~~~~G~is~~EF~~~l~~~~~~~~~~~~~~~if~~~D~~~~G~I~f~EF~~~~~~~~~~~~~~~l 101 (201)
T d1omra_ 23 TEEELS-SWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKL 101 (201)
T ss_dssp CHHHHH-HHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCCHHHHHHHHHTTTSCSSSEEEHHHHHHHHHHHHSSCGGGSH
T ss_pred CHHHHH-HHHHHHHHHCcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCCCeEeehhHHHHHHhhcccchHHHH
Confidence 567777 566778777543111 122232221 22333434433444333345688888864 556677777777
Q ss_pred HHHHHH
Q 034224 75 KMVMKT 80 (101)
Q Consensus 75 ki~~k~ 80 (101)
+..|+-
T Consensus 102 ~~~F~~ 107 (201)
T d1omra_ 102 EWAFSL 107 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
Done!