Query 034225
Match_columns 101
No_of_seqs 102 out of 104
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 11:08:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02703 beta-fructofuranosida 100.0 4.4E-44 9.6E-49 308.1 5.8 101 1-101 518-618 (618)
2 PLN02973 beta-fructofuranosida 100.0 4.7E-36 1E-40 257.0 4.9 83 1-83 486-568 (571)
3 PLN03005 beta-fructofuranosida 100.0 7.5E-35 1.6E-39 248.9 4.9 76 1-76 465-540 (550)
4 PF12899 Glyco_hydro_100: Alka 99.9 1.6E-27 3.5E-32 200.0 5.5 60 1-60 377-436 (436)
5 PF13693 HTH_35: Winged helix- 75.3 0.92 2E-05 30.8 0.0 34 7-40 43-76 (78)
6 PRK10137 alpha-glucosidase; Pr 71.5 5.1 0.00011 36.9 3.8 45 6-53 735-779 (786)
7 KOG2161 Glucosidase I [Carbohy 65.6 4.2 9.1E-05 38.1 2.0 30 25-59 817-846 (849)
8 COG2139 RPL21A Ribosomal prote 62.4 4 8.7E-05 29.4 1.0 19 25-43 54-72 (98)
9 TIGR01577 oligosac_amyl oligos 61.1 13 0.00029 31.9 4.1 37 18-57 577-613 (616)
10 PF13876 Phage_gp49_66: Phage 57.6 1.7 3.8E-05 29.6 -1.4 33 24-56 48-80 (81)
11 PF14666 RICTOR_M: Rapamycin-i 47.9 13 0.00028 29.1 1.8 43 26-68 59-103 (226)
12 PHA01971 hypothetical protein 46.4 4.7 0.0001 30.0 -0.8 35 24-58 88-122 (123)
13 COG3408 GDB1 Glycogen debranch 45.6 30 0.00065 31.0 3.9 39 23-63 574-615 (641)
14 PF03200 Glyco_hydro_63: Manno 45.2 28 0.0006 32.0 3.7 31 23-58 769-799 (801)
15 PF08760 DUF1793: Domain of un 44.4 36 0.00078 26.0 3.7 46 7-57 123-171 (171)
16 PRK04306 50S ribosomal protein 44.4 13 0.00028 26.4 1.2 19 24-42 55-73 (98)
17 PF15590 Imm15: Immunity prote 44.0 19 0.00042 24.5 1.9 17 19-35 21-38 (69)
18 cd06606 STKc_MAPKKK Catalytic 39.5 79 0.0017 21.4 4.4 59 24-89 172-248 (260)
19 PF05924 SAMP: SAMP Motif; In 38.8 17 0.00038 19.6 0.9 18 70-90 2-19 (20)
20 PF03694 Erg28: Erg28 like pro 38.1 23 0.00049 25.3 1.7 27 27-53 33-59 (111)
21 COG1132 MdlB ABC-type multidru 36.9 12 0.00026 31.2 0.1 37 22-70 450-491 (567)
22 KOG1572 Predicted protein tyro 36.2 8.9 0.00019 31.4 -0.7 44 4-51 133-181 (249)
23 COG1837 Predicted RNA-binding 34.9 19 0.0004 24.5 0.8 17 28-44 38-54 (76)
24 PLN00190 60S ribosomal protein 34.3 23 0.00049 27.2 1.2 47 25-71 55-104 (158)
25 PTZ00189 60S ribosomal protein 33.0 24 0.00052 27.1 1.2 47 25-71 55-104 (160)
26 cd08222 STKc_Nek11 Catalytic d 32.9 94 0.002 21.7 4.1 50 39-89 183-248 (260)
27 TIGR03696 Rhs_assc_core RHS re 32.8 21 0.00046 22.9 0.8 17 22-38 33-49 (76)
28 cd06642 STKc_STK25-YSK1 Cataly 32.6 78 0.0017 22.5 3.7 28 24-58 170-197 (277)
29 cd05517 Bromo_polybromo_II Bro 32.5 18 0.00039 24.6 0.4 11 19-29 32-42 (103)
30 PRK10344 DNA-binding transcrip 32.3 25 0.00053 25.1 1.1 37 7-43 49-86 (92)
31 PF02634 FdhD-NarQ: FdhD/NarQ 27.7 19 0.00041 27.6 -0.1 26 47-72 29-54 (236)
32 cd05087 PTKc_Aatyk1_Aatyk3 Cat 27.6 47 0.001 23.6 1.9 33 24-57 171-204 (269)
33 cd05037 PTK_Jak_rpt1 Pseudokin 27.6 1.7E+02 0.0036 20.2 4.6 29 24-57 173-201 (259)
34 cd08529 STKc_FA2-like Catalyti 27.5 1.2E+02 0.0026 20.9 3.9 59 24-89 170-244 (256)
35 cd05577 STKc_GRK Catalytic dom 27.3 1.3E+02 0.0028 21.5 4.1 60 24-90 163-241 (277)
36 cd06657 STKc_PAK4 Catalytic do 27.1 1.1E+02 0.0024 22.5 3.8 51 38-89 193-261 (292)
37 PF00447 HSF_DNA-bind: HSF-typ 26.9 48 0.001 22.0 1.7 18 54-71 7-24 (103)
38 cd05090 PTKc_Ror1 Catalytic do 26.9 69 0.0015 22.9 2.6 56 38-94 203-275 (283)
39 COG0488 Uup ATPase components 26.6 41 0.00089 29.4 1.7 43 23-77 144-186 (530)
40 PF00397 WW: WW domain; Inter 26.1 27 0.0006 19.0 0.4 14 21-34 3-16 (31)
41 cd05576 STKc_RPK118_like Catal 25.9 1.5E+02 0.0032 20.9 4.2 52 38-90 159-221 (237)
42 cd06640 STKc_MST4 Catalytic do 25.7 1.3E+02 0.0028 21.5 3.9 53 38-91 178-246 (277)
43 cd06641 STKc_MST3 Catalytic do 25.4 1.5E+02 0.0033 21.1 4.2 59 24-89 170-244 (277)
44 cd05085 PTKc_Fer Catalytic dom 24.6 1.6E+02 0.0035 20.3 4.1 66 24-96 163-245 (250)
45 cd06632 STKc_MEKK1_plant Catal 24.2 1.6E+02 0.0035 20.2 4.0 28 24-57 170-197 (258)
46 cd06623 PKc_MAPKK_plant_like C 23.6 1.9E+02 0.0041 19.9 4.3 19 39-58 178-196 (264)
47 COG3688 Predicted RNA-binding 23.4 83 0.0018 24.7 2.7 54 25-89 93-146 (173)
48 cd06616 PKc_MKK4 Catalytic dom 23.0 1.7E+02 0.0037 20.9 4.0 64 24-91 176-260 (288)
49 cd05122 PKc_STE Catalytic doma 22.2 2E+02 0.0044 19.3 4.1 28 24-58 166-193 (253)
50 COG0523 Putative GTPases (G3E 22.0 15 0.00033 30.0 -1.7 11 72-82 56-66 (323)
51 cd06618 PKc_MKK7 Catalytic dom 21.8 2.5E+02 0.0054 20.3 4.8 31 24-57 183-213 (296)
52 TIGR01464 hemE uroporphyrinoge 21.8 36 0.00078 26.6 0.4 22 42-63 139-171 (338)
53 PLN02993 lupeol synthase 21.5 1.6E+02 0.0034 27.4 4.4 49 5-53 639-693 (763)
54 PRK00468 hypothetical protein; 20.6 43 0.00093 22.2 0.5 15 29-43 39-53 (75)
55 PF07619 DUF1581: Protein of u 20.3 35 0.00076 24.0 0.1 15 22-36 68-82 (84)
56 PLN02433 uroporphyrinogen deca 20.2 40 0.00088 26.8 0.4 20 44-63 140-170 (345)
57 PRK02821 hypothetical protein; 20.1 48 0.001 22.3 0.7 15 29-43 40-54 (77)
No 1
>PLN02703 beta-fructofuranosidase
Probab=100.00 E-value=4.4e-44 Score=308.06 Aligned_cols=101 Identities=54% Similarity=0.879 Sum_probs=100.1
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHHcCCCcCccccccccHHHHhhhhh
Q 034225 1 MGRPELAEKAVAMAEKRLSVDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLENPAKASLLFWEEDYELLENCVC 80 (101)
Q Consensus 1 ~gR~~lA~rAi~~Ae~RL~~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~llenP~~l~~l~~eed~~~l~~~~c 80 (101)
||||+||+|||++||+||++|+||||||||+||+||||||+||||||||||||||||+||+++++|++|||++++++|+|
T Consensus 518 ~Gr~~lA~ral~~ae~rl~~d~WpEYyDGktGr~iGkqar~yQTWSiAGyLlAk~~l~~P~~~~~~~~~e~~~~~~~~~~ 597 (618)
T PLN02703 518 MGRPEIAEKAVELAERRISLDKWPEYYDTKRARFIGKQARLYQTWSIAGYLVAKLLLANPAAAKFLTSEEDSDLRNAFSC 597 (618)
T ss_pred cCCHHHHHHHHHHHHHHhhhccChhhccCCCCcCcceeccccCchHHHHHHHHHHHHhChhhccccccccchhhhhhhee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhhhhhhhhhccccC
Q 034225 81 ALSKTGRKKCLRFAARSQIRV 101 (101)
Q Consensus 81 ~~~~~~r~k~~r~~~~~~~~~ 101 (101)
.+++++|+||+|+++|+++||
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~ 618 (618)
T PLN02703 598 MISANPRRTRGPKKAQQPFIV 618 (618)
T ss_pred ecccCCcccCCCccccCCccC
Confidence 999999999999999999987
No 2
>PLN02973 beta-fructofuranosidase
Probab=100.00 E-value=4.7e-36 Score=257.02 Aligned_cols=83 Identities=47% Similarity=0.885 Sum_probs=80.7
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHHcCCCcCccccccccHHHHhhhhh
Q 034225 1 MGRPELAEKAVAMAEKRLSVDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLENPAKASLLFWEEDYELLENCVC 80 (101)
Q Consensus 1 ~gR~~lA~rAi~~Ae~RL~~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~llenP~~l~~l~~eed~~~l~~~~c 80 (101)
||||+||+|||++||+||++|+||||||||+||+||||||+||||||||||||||+|+||+++++|++|||+++...+.|
T Consensus 486 ~gr~~lA~ral~~ae~rl~~d~WpEyyDGktGr~iGkqar~yQTWSiAG~LlA~~~L~~P~~~~~~~~~e~~~~~~~~~~ 565 (571)
T PLN02973 486 TGRPQIARRAIEVAEARLHKDHWPEYYDGKVGRYVGKQSRKNQTWSVAGYLVAKMMLEDPSHVGMVCLEEDKQMKPVMRR 565 (571)
T ss_pred cCCHHHHHHHHHHHHHHhhhcCChhhcCCCCCcCcceeccccCchHHHHHHHHHHHhhChhhcccccccccccccchhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhc
Q 034225 81 ALS 83 (101)
Q Consensus 81 ~~~ 83 (101)
.-|
T Consensus 566 ~~~ 568 (571)
T PLN02973 566 SNS 568 (571)
T ss_pred ccc
Confidence 765
No 3
>PLN03005 beta-fructofuranosidase
Probab=100.00 E-value=7.5e-35 Score=248.93 Aligned_cols=76 Identities=51% Similarity=0.930 Sum_probs=73.7
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHHcCCCcCccccccccHHHHh
Q 034225 1 MGRPELAEKAVAMAEKRLSVDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLENPAKASLLFWEEDYELLE 76 (101)
Q Consensus 1 ~gR~~lA~rAi~~Ae~RL~~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~llenP~~l~~l~~eed~~~l~ 76 (101)
||||+||+|||++||+||++|+||||||||+||+||||||+||||||||||||||+|+||+++++|++|||+++..
T Consensus 465 ~gr~~lA~ral~~ae~rl~~d~WpEyydGktGr~iGkqar~~QTWSiAG~Lla~~~L~~P~~~~~~~~~e~~~~~~ 540 (550)
T PLN03005 465 TGRPQIARRAVDLIESRLHRDCWPEYYDGKLGRYVGKQARKYQTWSIAGYLVAKMLLEDPSHIGMISLEEDKLMKP 540 (550)
T ss_pred cCCHHHHHHHHHHHHHHhhhcCchhhcCCCCCcccceeccccCchHHHHHHHHHHHhhChhhccccccccccccch
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999986654
No 4
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=99.94 E-value=1.6e-27 Score=199.99 Aligned_cols=60 Identities=67% Similarity=1.124 Sum_probs=59.4
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHHcCC
Q 034225 1 MGRPELAEKAVAMAEKRLSVDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLENP 60 (101)
Q Consensus 1 ~gR~~lA~rAi~~Ae~RL~~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~llenP 60 (101)
|||+++|++|++.|++||++|+|||||||++||+||||||+||||||||||+|||+|+||
T Consensus 377 ~gr~~lA~~al~~a~~rL~~dewpEyydGktGrp~Gkqar~~QTWSaAgyLlA~~~l~~p 436 (436)
T PF12899_consen 377 MGRPELAERALEAAENRLSKDEWPEYYDGKTGRPMGKQARKYQTWSAAGYLLAKHLLENP 436 (436)
T ss_pred cCCHHHHHHHHHHHHHhhcccCCcccccCCCCCcccccccccCchHHHHHHHHHHHhhCc
Confidence 699999999999999999999999999999999999999999999999999999999999
No 5
>PF13693 HTH_35: Winged helix-turn-helix DNA-binding; PDB: 1NEQ_A 1NER_A.
Probab=75.25 E-value=0.92 Score=30.84 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhCCCCCCccccCCCceeeeeccc
Q 034225 7 AEKAVAMAEKRLSVDQWPEYYDTQSGRFIGKQSR 40 (101)
Q Consensus 7 A~rAi~~Ae~RL~~D~WPEYYDgk~GR~IGKQAR 40 (101)
++++|+-|-.--+.+=||+.|.-..++.+.+..|
T Consensus 43 ~E~~IA~aLgv~P~eIWPsRY~~~~~~~~~r~~r 76 (78)
T PF13693_consen 43 GERIIADALGVPPEEIWPSRYPDDGRRISSRKNR 76 (78)
T ss_dssp HHHHHHHHTTS-HHHHSTTT-SS-----------
T ss_pred HHHHHHHHHCcCHHHhCchhhhhcccchhhcccc
Confidence 5788888888888899999999998888877655
No 6
>PRK10137 alpha-glucosidase; Provisional
Probab=71.52 E-value=5.1 Score=36.93 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhCCCCCCccccCCCceeeeecccchhhhHHHHHHHH
Q 034225 6 LAEKAVAMAEKRLSVDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTS 53 (101)
Q Consensus 6 lA~rAi~~Ae~RL~~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLva 53 (101)
|+++-++.++.-...-.--||||..+|. |..++-| +||.|=+|+.
T Consensus 735 La~~ll~~a~~l~~tG~~~E~YDp~TGe--g~Ga~~F-SWTAAvlLml 779 (786)
T PRK10137 735 LADTFFRHAKGLTADGPIQENYNPLTGA--QQGAPNF-SWSAAHLYML 779 (786)
T ss_pred HHHHHHHHHHHHHhcCceEEeECCCCCc--ccCCCCC-ChHHHHHHHH
Confidence 4444555444344567788999999996 6668888 9999887753
No 7
>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism]
Probab=65.58 E-value=4.2 Score=38.12 Aligned_cols=30 Identities=40% Similarity=0.685 Sum_probs=25.9
Q ss_pred ccccCCCceeeeecccchhhhHHHHHHHHHHHHcC
Q 034225 25 EYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLEN 59 (101)
Q Consensus 25 EYYDgk~GR~IGKQAR~yQTWsIAGyLvak~llen 59 (101)
||||+++|| |.-||-|--||. ||++-|-+|
T Consensus 817 E~Yd~~tG~--G~ga~~FtGWTa---LVl~imse~ 846 (849)
T KOG2161|consen 817 ENYDPRTGR--GLGARHFTGWTA---LVLLIMSEN 846 (849)
T ss_pred eecCCCCCC--ccccccccchHH---HHHHHHHhc
Confidence 999999999 788999999996 788777654
No 8
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=62.37 E-value=4 Score=29.37 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=16.8
Q ss_pred ccccCCCceeeeecccchh
Q 034225 25 EYYDTQSGRFIGKQSRLHQ 43 (101)
Q Consensus 25 EYYDgk~GR~IGKQAR~yQ 43 (101)
-+|-|+||+.||+|-|-|-
T Consensus 54 ~rf~G~TG~Vvg~~g~ay~ 72 (98)
T COG2139 54 PRFQGKTGTVVGVRGRAYK 72 (98)
T ss_pred ccccCcceEEEeccCCEEE
Confidence 4899999999999998774
No 9
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=61.07 E-value=13 Score=31.93 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=31.2
Q ss_pred hCCCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHH
Q 034225 18 LSVDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLL 57 (101)
Q Consensus 18 L~~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~ll 57 (101)
-+-.-.||=||..+|+..| ..-||||=|+|+.|-+-|
T Consensus 577 ~~~Gll~Eqvd~~~g~~~g---~~Pl~wSHa~~i~a~~~l 613 (616)
T TIGR01577 577 TDLGLLPEQVDKETGKPAW---AVPLGWSHAMFLLTVLDL 613 (616)
T ss_pred CCCCCCccccCCCCCCCCC---cCCcccchHHHHHHHHHH
Confidence 4456699999999999998 789999999999876543
No 10
>PF13876 Phage_gp49_66: Phage protein (N4 Gp49/phage Sf6 gene 66) family
Probab=57.64 E-value=1.7 Score=29.63 Aligned_cols=33 Identities=33% Similarity=0.802 Sum_probs=29.6
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHH
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKML 56 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~l 56 (101)
|+=||-..||-|-++-=..|-|-.-||++-..|
T Consensus 48 p~nfD~eiG~~iA~~~A~~kiW~LeGY~L~~~l 80 (81)
T PF13876_consen 48 PENFDAEIGRKIARENAVNKIWELEGYLLKQKL 80 (81)
T ss_pred hHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778999999999999889999999999997654
No 11
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=47.89 E-value=13 Score=29.07 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=35.9
Q ss_pred cccCCCceeee--ecccchhhhHHHHHHHHHHHHcCCCcCccccc
Q 034225 26 YYDTQSGRFIG--KQSRLHQTWTIAGYLTSKMLLENPAKASLLFW 68 (101)
Q Consensus 26 YYDgk~GR~IG--KQAR~yQTWsIAGyLvak~llenP~~l~~l~~ 68 (101)
||-+-..||-. +..+..|.|+.+|..+.+.|+..||...++..
T Consensus 59 FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~~~eG~~~l~~ 103 (226)
T PF14666_consen 59 FYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLSSPEGIKYLSE 103 (226)
T ss_pred hcCCccccccccccccccchHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 78788888744 34555699999999999999999999999983
No 12
>PHA01971 hypothetical protein
Probab=46.41 E-value=4.7 Score=29.96 Aligned_cols=35 Identities=34% Similarity=0.766 Sum_probs=31.0
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHHc
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle 58 (101)
|+=||-..||-|-++-=.-+-|..-||++-..|-+
T Consensus 88 p~nfd~eiG~kiA~~nA~~kiW~LeGY~L~~~L~e 122 (123)
T PHA01971 88 PENFDAEIGRKIARENAVNKIWMLEGYLLKQKLSE 122 (123)
T ss_pred hHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77899999999999988999999999999887743
No 13
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=45.61 E-value=30 Score=30.99 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=30.1
Q ss_pred CCccccCCCceeeeecccchhhhHHHHHHHH--HHHH-cCCCcC
Q 034225 23 WPEYYDTQSGRFIGKQSRLHQTWTIAGYLTS--KMLL-ENPAKA 63 (101)
Q Consensus 23 WPEYYDgk~GR~IGKQAR~yQTWsIAGyLva--k~ll-enP~~l 63 (101)
=||.|||-.+.- -.++.-|-||.|=+|.+ +.+| ..|+.-
T Consensus 574 ~pE~f~g~~~~~--P~gc~~QAWS~a~~l~~~~~~~lg~~p~~~ 615 (641)
T COG3408 574 IPELFDGDSPNR--PKGCYPQAWSSAEILRSLLQGLLGIKPDGF 615 (641)
T ss_pred CcccccccCCCC--CCCcchhhhhHHHHHHHHHHHHhCCCcCcc
Confidence 399999988874 66789999999999874 4455 466654
No 14
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=45.22 E-value=28 Score=31.97 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=24.4
Q ss_pred CCccccCCCceeeeecccchhhhHHHHHHHHHHHHc
Q 034225 23 WPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 23 WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle 58 (101)
.=||||..||+ |+-++-|.-||. ||+.+|-|
T Consensus 769 ~~E~Y~~~tG~--g~g~~~FtGWts---lv~~im~e 799 (801)
T PF03200_consen 769 FWEQYNPETGR--GQGAHPFTGWTS---LVVLIMAE 799 (801)
T ss_pred EEEeECCCCCc--ccCCCCCCchHH---HHHHHHhc
Confidence 47999999998 677888888996 56655543
No 15
>PF08760 DUF1793: Domain of unknown function (DUF1793); InterPro: IPR014870 This domain is found at the C terminus of a glutaminase protein from fungi []. It is also found as a single domain protein in Bacteroides thetaiotaomicron.
Probab=44.39 E-value=36 Score=26.04 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhCCCCCCccccCCCceeee---ecccchhhhHHHHHHHHHHHH
Q 034225 7 AEKAVAMAEKRLSVDQWPEYYDTQSGRFIG---KQSRLHQTWTIAGYLTSKMLL 57 (101)
Q Consensus 7 A~rAi~~Ae~RL~~D~WPEYYDgk~GR~IG---KQAR~yQTWsIAGyLvak~ll 57 (101)
......-+.+-.++--.+..||+.+|.++| =||| +..|=..|+++|
T Consensus 123 i~~v~~~~~~t~~~~pftD~y~t~~g~~~~~~~F~AR-----pVVGG~fa~l~l 171 (171)
T PF08760_consen 123 IDPVWKFANETPSRVPFTDWYDTTTGKQPGGIGFQAR-----PVVGGHFALLAL 171 (171)
T ss_pred HHHHHHHHhCCCCCCCccceeECCCCCcCCCCCceec-----ccHHHHHHHHHC
Confidence 333444455555666678999999999999 7777 566767777764
No 16
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=44.37 E-value=13 Score=26.41 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=16.0
Q ss_pred CccccCCCceeeeecccch
Q 034225 24 PEYYDTQSGRFIGKQSRLH 42 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~y 42 (101)
.-||.|+||+.+|++-|-|
T Consensus 55 h~~yhGkTG~V~~v~~~A~ 73 (98)
T PRK04306 55 HPRFHGKTGTVVGKRGRAY 73 (98)
T ss_pred cccccCCCEEEEeecCeEE
Confidence 3589999999999987754
No 17
>PF15590 Imm15: Immunity protein 15
Probab=43.97 E-value=19 Score=24.53 Aligned_cols=17 Identities=41% Similarity=0.919 Sum_probs=14.0
Q ss_pred CCCCCCccc-cCCCceee
Q 034225 19 SVDQWPEYY-DTQSGRFI 35 (101)
Q Consensus 19 ~~D~WPEYY-Dgk~GR~I 35 (101)
+.|+|.++| |.+.|||=
T Consensus 21 ~~d~We~~y~DP~D~r~W 38 (69)
T PF15590_consen 21 SPDGWETLYQDPRDGRYW 38 (69)
T ss_pred CCcchhhhccCCCCCcee
Confidence 788999877 88888874
No 18
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=39.54 E-value=79 Score=21.36 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=33.3
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHH-cCCCcC-----------------ccccccccHHHHhhhhhhhccc
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLL-ENPAKA-----------------SLLFWEEDYELLENCVCALSKT 85 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~ll-enP~~l-----------------~~l~~eed~~~l~~~~c~~~~~ 85 (101)
||+..+.. ...+-..|++ |.++..++. ..|-.. .-+.-..+.++.+....++..+
T Consensus 172 pE~~~~~~------~~~~~Dv~sl-G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 244 (260)
T cd06606 172 PEVIRGEE------YGRAADIWSL-GCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRD 244 (260)
T ss_pred HhhhcCCC------CCchhhHHHH-HHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCC
Confidence 55554443 5667789997 667777776 233111 1111122556777777777777
Q ss_pred chhh
Q 034225 86 GRKK 89 (101)
Q Consensus 86 ~r~k 89 (101)
|.++
T Consensus 245 p~~R 248 (260)
T cd06606 245 PKKR 248 (260)
T ss_pred hhhC
Confidence 6543
No 19
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=38.82 E-value=17 Score=19.57 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=8.6
Q ss_pred ccHHHHhhhhhhhcccchhhh
Q 034225 70 EDYELLENCVCALSKTGRKKC 90 (101)
Q Consensus 70 ed~~~l~~~~c~~~~~~r~k~ 90 (101)
|| ++|.. |.-|+-|++++
T Consensus 2 ~d-eiL~~--CI~sAmPk~~~ 19 (20)
T PF05924_consen 2 ED-EILQE--CIGSAMPKRRR 19 (20)
T ss_dssp -H-HHHHH--HHHCTS-----
T ss_pred HH-HHHHH--HHHHhcccccC
Confidence 45 88987 56667666553
No 20
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=38.05 E-value=23 Score=25.28 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=20.8
Q ss_pred ccCCCceeeeecccchhhhHHHHHHHH
Q 034225 27 YDTQSGRFIGKQSRLHQTWTIAGYLTS 53 (101)
Q Consensus 27 YDgk~GR~IGKQAR~yQTWsIAGyLva 53 (101)
|+++.-..-+=++|.|.|||+.--++-
T Consensus 33 Y~~~~~~vt~L~aRtFG~WTl~s~~ir 59 (111)
T PF03694_consen 33 YSGKPKQVTPLSARTFGTWTLLSAIIR 59 (111)
T ss_pred cCCCCCCCCchhhhhhHHHHHHHHHHH
Confidence 666666677889999999998765543
No 21
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=36.88 E-value=12 Score=31.15 Aligned_cols=37 Identities=35% Similarity=0.675 Sum_probs=26.1
Q ss_pred CCCccccCCCc----eee-eecccchhhhHHHHHHHHHHHHcCCCcCccccccc
Q 034225 22 QWPEYYDTQSG----RFI-GKQSRLHQTWTIAGYLTSKMLLENPAKASLLFWEE 70 (101)
Q Consensus 22 ~WPEYYDgk~G----R~I-GKQAR~yQTWsIAGyLvak~llenP~~l~~l~~ee 70 (101)
+.|+-||+.-| .+= |++-| .-+|..|+.|| .+|.+||
T Consensus 450 ~lp~g~dt~vge~G~~LSgGQrQr---------laiARall~~~---~ILILDE 491 (567)
T COG1132 450 NLPDGYDTIVGERGVNLSGGQRQR---------LAIARALLRNP---PILILDE 491 (567)
T ss_pred hCcccccceecCCCccCCHHHHHH---------HHHHHHHhcCC---CEEEEec
Confidence 34999998876 222 33334 36899999999 6777877
No 22
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=36.24 E-value=8.9 Score=31.42 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHhhhCCCCCCcccc-----CCCceeeeecccchhhhHHHHHH
Q 034225 4 PELAEKAVAMAEKRLSVDQWPEYYD-----TQSGRFIGKQSRLHQTWTIAGYL 51 (101)
Q Consensus 4 ~~lA~rAi~~Ae~RL~~D~WPEYYD-----gk~GR~IGKQAR~yQTWsIAGyL 51 (101)
.+..++|+.+ -|-+-+||-+-- -++|.+|| +-|+.|-|+.+|.|
T Consensus 133 ~~~i~~~l~~---lld~~N~P~Lihc~rGkhRtg~lVg-clRklq~W~lssil 181 (249)
T KOG1572|consen 133 DHSIRKALKV---LLDKRNYPILIHCKRGKHRTGCLVG-CLRKLQNWSLSSIL 181 (249)
T ss_pred HHHHHHHHHH---HhcccCCceEEecCCCCcchhhhHH-HHHHHhccchhHHH
Confidence 3455666655 677888998874 45677888 56799999999954
No 23
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]
Probab=34.85 E-value=19 Score=24.48 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=14.2
Q ss_pred cCCCceeeeecccchhh
Q 034225 28 DTQSGRFIGKQSRLHQT 44 (101)
Q Consensus 28 Dgk~GR~IGKQAR~yQT 44 (101)
.+..|+.||||-|.-|.
T Consensus 38 ~~D~GkvIGk~GRti~A 54 (76)
T COG1837 38 PEDMGKVIGKQGRTIQA 54 (76)
T ss_pred cccccceecCCChhHHH
Confidence 35689999999998875
No 24
>PLN00190 60S ribosomal protein L21; Provisional
Probab=34.28 E-value=23 Score=27.23 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=32.6
Q ss_pred ccccCCCceeeeecccchhhh-H--HHHHHHHHHHHcCCCcCcccccccc
Q 034225 25 EYYDTQSGRFIGKQSRLHQTW-T--IAGYLTSKMLLENPAKASLLFWEED 71 (101)
Q Consensus 25 EYYDgk~GR~IGKQAR~yQTW-s--IAGyLvak~llenP~~l~~l~~eed 71 (101)
-||.|+||+.+|.+-|-|-.= . .-|=.++|.+.--|||+.-..+.||
T Consensus 55 k~YHGkTG~V~nv~~~A~gV~V~K~vggr~~~Kri~vriEHlk~sk~r~~ 104 (158)
T PLN00190 55 KFYHGRTGIVWNVTKRAVGVEVNKQVGNRIIRKRIHVRVEHVQPSRCREE 104 (158)
T ss_pred ccccCCCeEEEeecCcEEEEEEEEeeCCeEeeEEEEeCHHHccCccCHHH
Confidence 489999999999998865320 0 1222345656667999988888775
No 25
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=33.01 E-value=24 Score=27.13 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=34.6
Q ss_pred ccccCCCceeeeecccchhh---hHHHHHHHHHHHHcCCCcCcccccccc
Q 034225 25 EYYDTQSGRFIGKQSRLHQT---WTIAGYLTSKMLLENPAKASLLFWEED 71 (101)
Q Consensus 25 EYYDgk~GR~IGKQAR~yQT---WsIAGyLvak~llenP~~l~~l~~eed 71 (101)
-||.|+||+.+|.+-|-|-. =..-|=.++|.+.--|||+.-..+.||
T Consensus 55 k~YHGkTG~V~nv~~~A~gViV~k~vg~ki~~Kri~vr~EHlk~sk~r~~ 104 (160)
T PTZ00189 55 KYYHGRTGRVFNVTPRAVGVIVNKRVRGRIVRKRIHVRIEHVRKSRCRED 104 (160)
T ss_pred ccccCCCeEEEeecCeEEEEEEEEEECCEEeeeEEecCHhHcCCcCCHHH
Confidence 58999999999999886611 012233457877788999998888765
No 26
>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check
Probab=32.89 E-value=94 Score=21.73 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=27.5
Q ss_pred ccchhhhHHHHHHHHHHHHcCCC-c---------------CccccccccHHHHhhhhhhhcccchhh
Q 034225 39 SRLHQTWTIAGYLTSKMLLENPA-K---------------ASLLFWEEDYELLENCVCALSKTGRKK 89 (101)
Q Consensus 39 AR~yQTWsIAGyLvak~llenP~-~---------------l~~l~~eed~~~l~~~~c~~~~~~r~k 89 (101)
..+-..|++ |.++..++...+- . ...+....+.++.+....++..+|.++
T Consensus 183 ~~~~Dv~sl-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R 248 (260)
T cd08222 183 DSKSDIWSL-GCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLR 248 (260)
T ss_pred CchhhHHHH-HHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhC
Confidence 345788998 8788876653221 0 000111224566666666777766544
No 27
>TIGR03696 Rhs_assc_core RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
Probab=32.83 E-value=21 Score=22.87 Aligned_cols=17 Identities=35% Similarity=0.768 Sum_probs=14.5
Q ss_pred CCCccccCCCceeeeec
Q 034225 22 QWPEYYDTQSGRFIGKQ 38 (101)
Q Consensus 22 ~WPEYYDgk~GR~IGKQ 38 (101)
-..-|||...|||+..-
T Consensus 33 ~~~R~Ydp~~Grf~~~D 49 (76)
T TIGR03696 33 NGARYYDPELGRFLSPD 49 (76)
T ss_pred eCCEeEeCCCCceeccC
Confidence 45679999999999866
No 28
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=32.57 E-value=78 Score=22.55 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=19.5
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHHc
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle 58 (101)
||++.+.. .+.+...|++ |.++..++..
T Consensus 170 PE~~~~~~------~~~~~Dv~sl-G~il~el~tg 197 (277)
T cd06642 170 PEVIKQSA------YDFKADIWSL-GITAIELAKG 197 (277)
T ss_pred HHHhCcCC------CchhhhHHHH-HHHHHHHHhC
Confidence 77765432 3456789998 8888887763
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=32.53 E-value=18 Score=24.64 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=9.0
Q ss_pred CCCCCCccccC
Q 034225 19 SVDQWPEYYDT 29 (101)
Q Consensus 19 ~~D~WPEYYDg 29 (101)
+++++|+||+-
T Consensus 32 ~~~~~pdYy~v 42 (103)
T cd05517 32 SKVLYPDYYAV 42 (103)
T ss_pred CCCCCCCHHHH
Confidence 56889999974
No 30
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional
Probab=32.33 E-value=25 Score=25.10 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhCCCCCCccc-cCCCceeeeecccchh
Q 034225 7 AEKAVAMAEKRLSVDQWPEYY-DTQSGRFIGKQSRLHQ 43 (101)
Q Consensus 7 A~rAi~~Ae~RL~~D~WPEYY-Dgk~GR~IGKQAR~yQ 43 (101)
.++.|+-|-.-=+..=||+=| |..+|.++-+..|.-|
T Consensus 49 gEriIA~aLGv~P~eIWPsRY~~~~~~~~~~r~~~~r~ 86 (92)
T PRK10344 49 GEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRS 86 (92)
T ss_pred HHHHHHHHHCcCHHHhCcccccccccCcccchHHhhcc
Confidence 466777777777888999855 6688889887777654
No 31
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=27.75 E-value=19 Score=27.59 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCCcCccccccccH
Q 034225 47 IAGYLTSKMLLENPAKASLLFWEEDY 72 (101)
Q Consensus 47 IAGyLvak~llenP~~l~~l~~eed~ 72 (101)
++|||++.-++++|+++.-+..+++.
T Consensus 29 a~GfL~sEGiI~s~~DI~~i~v~~~~ 54 (236)
T PF02634_consen 29 AVGFLFSEGIIDSPEDIESIEVDEEE 54 (236)
T ss_dssp HHHHHHHCTS--SGGGEEEEEEETTT
T ss_pred HHHHHHhcCCcCCHhHeeEEEEECCC
Confidence 58999999999999999888887753
No 32
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=27.64 E-value=47 Score=23.58 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=22.9
Q ss_pred CccccCCCceee-eecccchhhhHHHHHHHHHHHH
Q 034225 24 PEYYDTQSGRFI-GKQSRLHQTWTIAGYLTSKMLL 57 (101)
Q Consensus 24 PEYYDgk~GR~I-GKQAR~yQTWsIAGyLvak~ll 57 (101)
||++++..+.+. ....+.-..||+ |.++..++.
T Consensus 171 PE~~~~~~~~~~~~~~~~~~Diwsl-G~~l~el~~ 204 (269)
T cd05087 171 PELVDEVHGNLLVVDQTKESNVWSL-GVTIWELFE 204 (269)
T ss_pred HhHhccccccccccCCCccchhHHH-HHHHHHHHh
Confidence 788876544432 245667899999 888888774
No 33
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=27.58 E-value=1.7e+02 Score=20.25 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=19.3
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHH
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLL 57 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~ll 57 (101)
||++.+.. ..-+.....|+. |.++..++.
T Consensus 173 PE~~~~~~----~~~~~~~Di~sl-G~~~~~l~~ 201 (259)
T cd05037 173 PECIRNGQ----ASLTIAADKWSF-GTTLLEICS 201 (259)
T ss_pred hhhhcCCC----CCcchhhHHHHH-HHHHHHHHh
Confidence 88887654 334566789997 666666554
No 34
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=27.48 E-value=1.2e+02 Score=20.89 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=32.6
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHHc-CCC---------------cCccccccccHHHHhhhhhhhcccch
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE-NPA---------------KASLLFWEEDYELLENCVCALSKTGR 87 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle-nP~---------------~l~~l~~eed~~~l~~~~c~~~~~~r 87 (101)
|||+.+.. -...-..|++ |.++..++.. .|= ...-+.-..+.++.+....++..+|.
T Consensus 170 PE~~~~~~------~~~~~Di~sl-G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~ 242 (256)
T cd08529 170 PELCEDKP------YNEKSDVWAL-GVVLYECCTGKHPFDANNQGALILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYR 242 (256)
T ss_pred HHHhcCCC------CCCccchHHH-HHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHccCCcc
Confidence 77776532 2245688998 7777776653 331 01111112355667766677776665
Q ss_pred hh
Q 034225 88 KK 89 (101)
Q Consensus 88 ~k 89 (101)
++
T Consensus 243 ~R 244 (256)
T cd08529 243 QR 244 (256)
T ss_pred cC
Confidence 54
No 35
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=27.34 E-value=1.3e+02 Score=21.47 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=34.9
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHHc-CCCcCc------------------cccccccHHHHhhhhhhhcc
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE-NPAKAS------------------LLFWEEDYELLENCVCALSK 84 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle-nP~~l~------------------~l~~eed~~~l~~~~c~~~~ 84 (101)
||++.+.. .+....-|++ |.++..++.. .|-... -+.-..+.++.+.+..++..
T Consensus 163 PE~~~~~~------~~~~~Di~sl-G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~ 235 (277)
T cd05577 163 PEVLQGEV------YDFSVDWFAL-GCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQK 235 (277)
T ss_pred HHHhcCCC------CCchhhhHHH-HHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccC
Confidence 66665422 3556788998 7777777653 331100 00011256778888888888
Q ss_pred cchhhh
Q 034225 85 TGRKKC 90 (101)
Q Consensus 85 ~~r~k~ 90 (101)
+|.++-
T Consensus 236 ~p~~R~ 241 (277)
T cd05577 236 DPEKRL 241 (277)
T ss_pred ChhHcc
Confidence 776543
No 36
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=27.10 E-value=1.1e+02 Score=22.47 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=30.2
Q ss_pred cccchhhhHHHHHHHHHHHHcCCCcCc--------cc---------c-ccccHHHHhhhhhhhcccchhh
Q 034225 38 QSRLHQTWTIAGYLTSKMLLENPAKAS--------LL---------F-WEEDYELLENCVCALSKTGRKK 89 (101)
Q Consensus 38 QAR~yQTWsIAGyLvak~llenP~~l~--------~l---------~-~eed~~~l~~~~c~~~~~~r~k 89 (101)
.+.....|++ |.++..++..+|-..+ ++ . -..+.++.+.+.-|+..+|.++
T Consensus 193 ~~~~~Dv~sl-Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R 261 (292)
T cd06657 193 YGPEVDIWSL-GIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQR 261 (292)
T ss_pred CCchhhHHHH-HHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccC
Confidence 4567799999 7888887764431100 00 0 0125566677777777776543
No 37
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=26.88 E-value=48 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.732 Sum_probs=15.4
Q ss_pred HHHHcCCCcCcccccccc
Q 034225 54 KMLLENPAKASLLFWEED 71 (101)
Q Consensus 54 k~llenP~~l~~l~~eed 71 (101)
..||+||+.-.+|.|.+|
T Consensus 7 ~~~l~~~~~~~~I~W~~~ 24 (103)
T PF00447_consen 7 YEMLEDPENSDIIRWSPD 24 (103)
T ss_dssp HHHHCTTTTTTTCEECTT
T ss_pred HHHHcCCCCCCEEEEeCC
Confidence 458899999999999875
No 38
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=26.88 E-value=69 Score=22.88 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=33.2
Q ss_pred cccchhhhHHHHHHHHHHHH-cC-CCc-------C------ccccccc--cHHHHhhhhhhhcccchhhhhhhh
Q 034225 38 QSRLHQTWTIAGYLTSKMLL-EN-PAK-------A------SLLFWEE--DYELLENCVCALSKTGRKKCLRFA 94 (101)
Q Consensus 38 QAR~yQTWsIAGyLvak~ll-en-P~~-------l------~~l~~ee--d~~~l~~~~c~~~~~~r~k~~r~~ 94 (101)
....-..|++ |.++..++. .- |-. . ..+...+ +.++.+.+.+++..+|.++-+-..
T Consensus 203 ~~~~~Dv~sl-G~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ 275 (283)
T cd05090 203 FSSDSDIWSF-GVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKD 275 (283)
T ss_pred CCchhhhHHH-HHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHH
Confidence 4566788998 778887764 22 210 0 1112222 567777788888888766654443
No 39
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=26.65 E-value=41 Score=29.38 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCccccCCCceeeeecccchhhhHHHHHHHHHHHHcCCCcCccccccccHHHHhh
Q 034225 23 WPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLENPAKASLLFWEEDYELLEN 77 (101)
Q Consensus 23 WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~llenP~~l~~l~~eed~~~l~~ 77 (101)
-++. |.+.+.+=|-|.++- ++|+.|+.+|+ +|-++|+...|+.
T Consensus 144 ~~~~-~~~~~~LSGG~r~Rv--------~LA~aL~~~pD---lLLLDEPTNHLD~ 186 (530)
T COG0488 144 FPDE-DRPVSSLSGGWRRRV--------ALARALLEEPD---LLLLDEPTNHLDL 186 (530)
T ss_pred CCcc-cCchhhcCHHHHHHH--------HHHHHHhcCCC---EEEEcCCCcccCH
Confidence 3444 899999999888774 89999999999 6677886554443
No 40
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=26.06 E-value=27 Score=19.02 Aligned_cols=14 Identities=50% Similarity=1.044 Sum_probs=10.1
Q ss_pred CCCCccccCCCcee
Q 034225 21 DQWPEYYDTQSGRF 34 (101)
Q Consensus 21 D~WPEYYDgk~GR~ 34 (101)
++|-+++|..+|+.
T Consensus 3 ~gW~~~~~~~~g~~ 16 (31)
T PF00397_consen 3 PGWEEYFDPDSGRP 16 (31)
T ss_dssp TTEEEEEETTTSEE
T ss_pred cCCEEEEcCCCCCE
Confidence 45999998556764
No 41
>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins. Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha
Probab=25.86 E-value=1.5e+02 Score=20.86 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=30.2
Q ss_pred cccchhhhHHHHHHHHHHHHc------CCCcCcc---ccccc--cHHHHhhhhhhhcccchhhh
Q 034225 38 QSRLHQTWTIAGYLTSKMLLE------NPAKASL---LFWEE--DYELLENCVCALSKTGRKKC 90 (101)
Q Consensus 38 QAR~yQTWsIAGyLvak~lle------nP~~l~~---l~~ee--d~~~l~~~~c~~~~~~r~k~ 90 (101)
....-..|++ |.++..++.- .|..... +.++. +.++.+.+.-+++.+|.++-
T Consensus 159 ~~~~~Dvwsl-G~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~ 221 (237)
T cd05576 159 ETEACDWWSL-GAILFELLTGKTLVECHPSGINTHTTLNIPEWVSEEARSLLQQLLQFNPTERL 221 (237)
T ss_pred CCchhhHHHH-HHHHHHHHHCcchhhcCchhcccccccCCcccCCHHHHHHHHHHccCCHHHhc
Confidence 4566799998 7787777752 2222110 11111 45566666778888876553
No 42
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=25.67 E-value=1.3e+02 Score=21.48 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=32.7
Q ss_pred cccchhhhHHHHHHHHHHHHcCCCcCcc----------------ccccccHHHHhhhhhhhcccchhhhh
Q 034225 38 QSRLHQTWTIAGYLTSKMLLENPAKASL----------------LFWEEDYELLENCVCALSKTGRKKCL 91 (101)
Q Consensus 38 QAR~yQTWsIAGyLvak~llenP~~l~~----------------l~~eed~~~l~~~~c~~~~~~r~k~~ 91 (101)
....-..|++ |.++..++...|-.... +.-..+.++.+....++..+|.++.+
T Consensus 178 ~~~~~Dv~sl-G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~ 246 (277)
T cd06640 178 YDSKADIWSL-GITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPT 246 (277)
T ss_pred CccHHHHHHH-HHHHHHHHHCCCCCCCcChHhHhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcC
Confidence 4567889998 98998887654321110 11122456777777888887765543
No 43
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=25.37 E-value=1.5e+02 Score=21.15 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=34.9
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHHcCCCcCcc----------------ccccccHHHHhhhhhhhcccch
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLENPAKASL----------------LFWEEDYELLENCVCALSKTGR 87 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~llenP~~l~~----------------l~~eed~~~l~~~~c~~~~~~r 87 (101)
||+..+. ...+.-..|++ |.++..++...|-.-.. +.-..+.++.+....++..+|.
T Consensus 170 PE~~~~~------~~~~~~Dv~sl-G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~ 242 (277)
T cd06641 170 PEVIKQS------AYDSKADIWSL-GITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPS 242 (277)
T ss_pred hhhhccC------CCCchhhHHHH-HHHHHHHHcCCCCCCccchHHHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChh
Confidence 7776542 34566789998 88888877643221111 1112256677777777777765
Q ss_pred hh
Q 034225 88 KK 89 (101)
Q Consensus 88 ~k 89 (101)
++
T Consensus 243 ~R 244 (277)
T cd06641 243 FR 244 (277)
T ss_pred hC
Confidence 43
No 44
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=24.60 E-value=1.6e+02 Score=20.34 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=36.8
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHH-cC-CCc---------------CccccccccHHHHhhhhhhhcccc
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLL-EN-PAK---------------ASLLFWEEDYELLENCVCALSKTG 86 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~ll-en-P~~---------------l~~l~~eed~~~l~~~~c~~~~~~ 86 (101)
||++++. +-...-..|++ |.++..++. .. |-. ..-...+.+.++.+.+.-+++.+|
T Consensus 163 PE~~~~~------~~~~~~Di~sl-G~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p 235 (250)
T cd05085 163 PEALNYG------RYSSESDVWSY-GILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKP 235 (250)
T ss_pred HHHhccC------CCCchhHHHHH-HHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCc
Confidence 6766542 23455788998 878777664 22 210 001112235677777777787777
Q ss_pred hhhhhhhhhh
Q 034225 87 RKKCLRFAAR 96 (101)
Q Consensus 87 r~k~~r~~~~ 96 (101)
..+-+-....
T Consensus 236 ~~Rp~~~~l~ 245 (250)
T cd05085 236 ENRPKFSELQ 245 (250)
T ss_pred ccCCCHHHHH
Confidence 6654444333
No 45
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=24.21 E-value=1.6e+02 Score=20.23 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=18.7
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHH
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLL 57 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~ll 57 (101)
||++..+. .-.+.-..|++ |.++..++.
T Consensus 170 pe~~~~~~-----~~~~~~D~~sl-G~~l~~l~~ 197 (258)
T cd06632 170 PEVIAQQG-----GYGLAADIWSL-GCTVLEMAT 197 (258)
T ss_pred HHHhcCCC-----CCCchhhhHHH-HHHHHHHHh
Confidence 66665433 23566788998 888888776
No 46
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=23.58 E-value=1.9e+02 Score=19.93 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=14.0
Q ss_pred ccchhhhHHHHHHHHHHHHc
Q 034225 39 SRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 39 AR~yQTWsIAGyLvak~lle 58 (101)
...-..|++ |.++..++..
T Consensus 178 ~~~~Dv~sl-G~il~~l~tg 196 (264)
T cd06623 178 SYAADIWSL-GLTLLECALG 196 (264)
T ss_pred CchhhHHHH-HHHHHHHHhC
Confidence 455788998 7788777764
No 47
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=23.39 E-value=83 Score=24.73 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=38.3
Q ss_pred ccccCCCceeeeecccchhhhHHHHHHHHHHHHcCCCcCccccccccHHHHhhhhhhhcccchhh
Q 034225 25 EYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLENPAKASLLFWEEDYELLENCVCALSKTGRKK 89 (101)
Q Consensus 25 EYYDgk~GR~IGKQAR~yQTWsIAGyLvak~llenP~~l~~l~~eed~~~l~~~~c~~~~~~r~k 89 (101)
|+++.++++.+=--|=.-|-|+|-|+-...+ |--|=..-++...|-++++.||-
T Consensus 93 el~~~~t~~V~VaTSD~~EQ~~Ifg~GA~r~-----------Sarel~~ev~~~~~~i~k~~rki 146 (173)
T COG3688 93 ELRNAATHQVIVATSDRAEQWTIFGQGALRM-----------SARELYQEVETIEARISKSSRKI 146 (173)
T ss_pred HHhccccceEEEEeCchhhhhhhhccchHHH-----------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 5668899999888899999999999743221 22222566778888888865543
No 48
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=23.04 E-value=1.7e+02 Score=20.87 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=34.1
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHHc-CCCc----------------Cccccc----cccHHHHhhhhhhh
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE-NPAK----------------ASLLFW----EEDYELLENCVCAL 82 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle-nP~~----------------l~~l~~----eed~~~l~~~~c~~ 82 (101)
||++++..+..++.. -.-|++ |.++..++.- -|=. ...+.. +-+.++.+.+..++
T Consensus 176 PE~~~~~~~~~~~~~---~Di~sl-G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l 251 (288)
T cd06616 176 PERIDPSARDGYDVR---SDVWSL-GITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCL 251 (288)
T ss_pred HHHhccccccCCcch---hhhhHH-HHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHc
Confidence 777765543334433 477888 7677666643 2210 001111 12456677777788
Q ss_pred cccchhhhh
Q 034225 83 SKTGRKKCL 91 (101)
Q Consensus 83 ~~~~r~k~~ 91 (101)
+.+|.++-+
T Consensus 252 ~~~p~~Rpt 260 (288)
T cd06616 252 IKDESKRPK 260 (288)
T ss_pred cCChhhCcC
Confidence 887755433
No 49
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=22.23 E-value=2e+02 Score=19.26 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=18.1
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHHc
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle 58 (101)
||+.++.. -...-..|++ |.++..++..
T Consensus 166 PE~~~~~~------~~~~~Dv~sl-G~il~~l~~g 193 (253)
T cd05122 166 PEVINGKP------YDYKADIWSL-GITAIELAEG 193 (253)
T ss_pred HHHHcCCC------CCccccHHHH-HHHHHHHHhC
Confidence 56555433 3455788997 7777777763
No 50
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=21.95 E-value=15 Score=29.99 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.8
Q ss_pred HHHHhhhhhhh
Q 034225 72 YELLENCVCAL 82 (101)
Q Consensus 72 ~~~l~~~~c~~ 82 (101)
.||-|.|.|.-
T Consensus 56 ~El~nGCICCT 66 (323)
T COG0523 56 VELTNGCICCT 66 (323)
T ss_pred EEeCCceEEEe
Confidence 57788999876
No 51
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=21.84 E-value=2.5e+02 Score=20.33 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=20.1
Q ss_pred CccccCCCceeeeecccchhhhHHHHHHHHHHHH
Q 034225 24 PEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLL 57 (101)
Q Consensus 24 PEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~ll 57 (101)
||++.+... -|....+-..|++ |.++..++.
T Consensus 183 PE~~~~~~~--~~~~~~~~Di~sl-G~il~el~~ 213 (296)
T cd06618 183 PERIDPPDP--NPKYDIRADVWSL-GISLVELAT 213 (296)
T ss_pred HhhcCCCCC--ccccccchhHHHH-HHHHHHHHh
Confidence 777765442 2334456788998 777777665
No 52
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=21.81 E-value=36 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.688 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHH-----------HHHHcCCCcC
Q 034225 42 HQTWTIAGYLTS-----------KMLLENPAKA 63 (101)
Q Consensus 42 yQTWsIAGyLva-----------k~llenP~~l 63 (101)
.=-||+|++|+. ++|.+||+.+
T Consensus 139 ~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v 171 (338)
T TIGR01464 139 GAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVL 171 (338)
T ss_pred CchHHHHHHHHcCCCCccHHHHHHHHHhCHHHH
Confidence 446999999873 5666788754
No 53
>PLN02993 lupeol synthase
Probab=21.45 E-value=1.6e+02 Score=27.41 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=35.2
Q ss_pred HHHHHHHHH-HHhhhCCCCCCccccC-CCceeee---ecccchhh-hHHHHHHHH
Q 034225 5 ELAEKAVAM-AEKRLSVDQWPEYYDT-QSGRFIG---KQSRLHQT-WTIAGYLTS 53 (101)
Q Consensus 5 ~lA~rAi~~-Ae~RL~~D~WPEYYDg-k~GR~IG---KQAR~yQT-WsIAGyLva 53 (101)
+-++||++- ...+.+.-.|.|=|.. .+.+|+| ..|-.||| |.+-|++-|
T Consensus 639 ~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~a 693 (763)
T PLN02993 639 LAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHA 693 (763)
T ss_pred HHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHc
Confidence 456788874 3456667799996544 6778996 56899999 777776555
No 54
>PRK00468 hypothetical protein; Provisional
Probab=20.65 E-value=43 Score=22.23 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=12.4
Q ss_pred CCCceeeeecccchh
Q 034225 29 TQSGRFIGKQSRLHQ 43 (101)
Q Consensus 29 gk~GR~IGKQAR~yQ 43 (101)
.-.||.||||-|.-|
T Consensus 39 ~D~GrVIGk~Gr~i~ 53 (75)
T PRK00468 39 EDMGKVIGKQGRIAK 53 (75)
T ss_pred hhCcceecCCChhHH
Confidence 457999999999766
No 55
>PF07619 DUF1581: Protein of unknown function (DUF1581); InterPro: IPR022660 Several Rhodopirellula baltica proteins share this domain. They also match PF07622 from PFAM
Probab=20.28 E-value=35 Score=23.98 Aligned_cols=15 Identities=33% Similarity=0.973 Sum_probs=12.5
Q ss_pred CCCccccCCCceeee
Q 034225 22 QWPEYYDTQSGRFIG 36 (101)
Q Consensus 22 ~WPEYYDgk~GR~IG 36 (101)
+|-.|||+..+++-|
T Consensus 68 GW~syy~~~~~~~~g 82 (84)
T PF07619_consen 68 GWSSYYDESRNNYPG 82 (84)
T ss_pred chHHhccCcccccCC
Confidence 799999999877655
No 56
>PLN02433 uroporphyrinogen decarboxylase
Probab=20.18 E-value=40 Score=26.79 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=15.9
Q ss_pred hhHHHHHHHH-----------HHHHcCCCcC
Q 034225 44 TWTIAGYLTS-----------KMLLENPAKA 63 (101)
Q Consensus 44 TWsIAGyLva-----------k~llenP~~l 63 (101)
-||+|+||+- ++|.+||+.+
T Consensus 140 P~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v 170 (345)
T PLN02433 140 PWTLATYIVEGGSSKNYKVIKKMAFTAPEVL 170 (345)
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHhCHHHH
Confidence 7999999984 5566888865
No 57
>PRK02821 hypothetical protein; Provisional
Probab=20.12 E-value=48 Score=22.27 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.3
Q ss_pred CCCceeeeecccchh
Q 034225 29 TQSGRFIGKQSRLHQ 43 (101)
Q Consensus 29 gk~GR~IGKQAR~yQ 43 (101)
.-.||.||||-|.-+
T Consensus 40 ~D~GrVIGk~Gr~i~ 54 (77)
T PRK02821 40 DDLGKVIGRGGRTAT 54 (77)
T ss_pred hhCcceeCCCCchHH
Confidence 457999999999765
Done!