Query 034225
Match_columns 101
No_of_seqs 102 out of 104
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 19:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c68_A Uncharacterized protein 79.6 1.9 6.4E-05 37.1 4.3 31 20-53 723-753 (761)
2 2z07_A Putative uncharacterize 73.4 2.6 8.9E-05 32.1 3.2 40 6-52 378-417 (420)
3 2jg0_A Periplasmic trehalase; 69.4 5.9 0.0002 32.5 4.6 31 21-51 462-496 (535)
4 2ahf_A Unsaturated glucuronyl 62.1 12 0.0004 29.7 4.9 56 5-60 171-240 (377)
5 2fba_A Glucoamylase Glu1; (alp 56.6 25 0.00085 28.7 6.1 51 5-58 435-486 (492)
6 3enu_A Nitrollin, putative unc 48.9 3.3 0.00011 29.5 -0.2 20 12-31 13-32 (114)
7 1gai_A Glucoamylase-471; hydro 46.4 40 0.0014 27.6 5.8 49 7-58 380-429 (472)
8 3k50_A Putative S41 protease; 41.2 7.3 0.00025 31.1 0.6 9 20-28 3-11 (403)
9 2zzr_A Unsaturated glucuronyl 41.1 32 0.0011 27.5 4.4 51 2-52 190-257 (397)
10 1lf6_A Glucoamylase; (alpha/al 39.0 17 0.00059 30.3 2.6 37 20-58 631-667 (684)
11 2gz6_A N-acetyl-D-glucosamine 34.8 30 0.001 25.5 3.1 21 42-62 305-325 (388)
12 2vn4_A Glucoamylase; hydrolase 34.2 78 0.0027 26.5 5.8 49 7-58 385-434 (599)
13 4gl3_A Putative glucoamylase; 32.9 72 0.0024 26.0 5.3 57 2-58 74-142 (424)
14 2dbs_A Hypothetical protein TT 31.8 28 0.00097 23.7 2.3 27 2-28 40-66 (90)
15 3eu8_A Putative glucoamylase; 30.8 42 0.0014 27.8 3.6 56 3-58 85-150 (430)
16 1vq8_Q 50S ribosomal protein L 28.6 19 0.00065 24.5 1.0 17 25-41 55-71 (96)
17 2k5k_A Uncharacterized protein 24.5 58 0.002 21.3 2.7 42 4-49 13-57 (70)
18 2juc_A PRE-mRNA-splicing facto 24.1 39 0.0013 21.1 1.8 34 39-76 21-54 (59)
19 2l92_A Histone family protein 23.5 15 0.0005 22.7 -0.3 9 24-32 5-13 (50)
20 2khf_A PLNJ; anti-microbial, b 23.3 5.6 0.00019 21.8 -2.0 12 25-36 13-24 (26)
21 2bn5_A PSI; nuclear protein, s 21.7 6.1 0.00021 22.8 -2.1 6 22-27 7-12 (33)
22 2zkr_q 60S ribosomal protein L 21.3 25 0.00086 25.9 0.6 47 25-71 55-104 (160)
23 3j21_R 50S ribosomal protein L 20.9 33 0.0011 23.3 1.0 17 25-41 56-72 (97)
No 1
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=79.64 E-value=1.9 Score=37.11 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.9
Q ss_pred CCCCCccccCCCceeeeecccchhhhHHHHHHHH
Q 034225 20 VDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTS 53 (101)
Q Consensus 20 ~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLva 53 (101)
.-..+|+||+.+|.-.|- .-|.||.+-+|..
T Consensus 723 ~G~~~E~yd~~tg~p~G~---~~fgWSaa~~l~l 753 (761)
T 3c68_A 723 DGPIQENYNPLTGAQQGA---PNFSWSAAHLYML 753 (761)
T ss_dssp SSCCCSEECTTTCCEESC---SSCHHHHHHHHHH
T ss_pred CCceeeEecCCCCCcCcC---CCchHHHHHHHHH
Confidence 467899999999987664 6789999976643
No 2
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=73.42 E-value=2.6 Score=32.10 Aligned_cols=40 Identities=33% Similarity=0.506 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhCCCCCCccccCCCceeeeecccchhhhHHHHHHH
Q 034225 6 LAEKAVAMAEKRLSVDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLT 52 (101)
Q Consensus 6 lA~rAi~~Ae~RL~~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLv 52 (101)
|+++-+.+++. -...|+||+.+|.-.|- .-|.||-+-+|.
T Consensus 378 l~~~~~~~~~~----~~~~E~yd~~~g~~~g~---~~fgWs~~~~l~ 417 (420)
T 2z07_A 378 LKADALALMER----EGFREYYDPLTGQGRGG---EGFSWSAALALF 417 (420)
T ss_dssp HHHHHHHHHHH----HCSEEEECTTTCCEEEE---ESCHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCeeeeeCCCCCCcCCC---CCCchHHHHHHH
Confidence 33555555542 35669999999976554 467999887664
No 3
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=69.35 E-value=5.9 Score=32.51 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=23.5
Q ss_pred CCCCccccCCCceeeee----cccchhhhHHHHHH
Q 034225 21 DQWPEYYDTQSGRFIGK----QSRLHQTWTIAGYL 51 (101)
Q Consensus 21 D~WPEYYDgk~GR~IGK----QAR~yQTWsIAGyL 51 (101)
..-+|+||+.+|.-.|- .....|.||.+-+|
T Consensus 462 G~l~E~yd~~~~~~~G~ggeY~~~~~fgWT~av~l 496 (535)
T 2jg0_A 462 KKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTL 496 (535)
T ss_dssp SSCBSCEETTSSSCBCCCSSSCCCBSCHHHHHHHH
T ss_pred CeeeeeECCCCCCCCCCCCCCCCCCCChhHHHHHH
Confidence 57899999998865543 01279999999877
No 4
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=62.11 E-value=12 Score=29.69 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhCCCC---CCc-cccCCCceeeeeccc-----ch-----hhhHHHHHHHHHHHHcCC
Q 034225 5 ELAEKAVAMAEKRLSVDQ---WPE-YYDTQSGRFIGKQSR-----LH-----QTWTIAGYLTSKMLLENP 60 (101)
Q Consensus 5 ~lA~rAi~~Ae~RL~~D~---WPE-YYDgk~GR~IGKQAR-----~y-----QTWsIAGyLvak~llenP 60 (101)
++|.++.+...+.+.+++ |-. +||..+|..+.+... -+ |-|-|-||+.+-....||
T Consensus 171 ~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d~ 240 (377)
T 2ahf_A 171 RVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNA 240 (377)
T ss_dssp HHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCCh
Confidence 345555555556665542 222 389999998743332 23 799999998765544444
No 5
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=56.65 E-value=25 Score=28.74 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhC-CCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHHc
Q 034225 5 ELAEKAVAMAEKRLS-VDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 5 ~lA~rAi~~Ae~RL~-~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle 58 (101)
+-|+.-++.+...-. .---||=||..+|+.. +..-||||-++|+.|-+-++
T Consensus 435 ~~A~~~l~~~~~~~~~~GllsEq~d~~tG~~~---ga~PltwSha~li~aa~~~~ 486 (492)
T 2fba_A 435 TFGDSFLQVILDHINDDGSLNEQLNRYTGYST---GAYSLTWSSGALLEAIRLRN 486 (492)
T ss_dssp HHHHHHHHHHHHHSCTTSCCCSEECTTTCCEE---SSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCccccCCCCCCCC---CccchHHHHHHHHHHHHHHh
Confidence 445555555554333 3458999999999987 56799999999998866553
No 6
>3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin, structural protein; 1.86A {Nitrosospira multiformis} PDB: 3ent_A
Probab=48.89 E-value=3.3 Score=29.47 Aligned_cols=20 Identities=10% Similarity=0.439 Sum_probs=16.3
Q ss_pred HHHHhhhCCCCCCccccCCC
Q 034225 12 AMAEKRLSVDQWPEYYDTQS 31 (101)
Q Consensus 12 ~~Ae~RL~~D~WPEYYDgk~ 31 (101)
.+-..++.++-|.+||++++
T Consensus 13 ~v~~~~~~~gCWvqFf~~~~ 32 (114)
T 3enu_A 13 QVSAELENRGCWVKFFDKKN 32 (114)
T ss_dssp HHHHHHHHHCCEEEEESSGG
T ss_pred EecChhhccCchhhhhcccc
Confidence 34457889999999999875
No 7
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=46.38 E-value=40 Score=27.60 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhC-CCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHHc
Q 034225 7 AEKAVAMAEKRLS-VDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 7 A~rAi~~Ae~RL~-~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle 58 (101)
|++-++.+...-. .---||=||..+|+.. +..-||||-++|+.|-+.++
T Consensus 380 A~~~~e~~~~~~~~~GllsEq~d~~tG~~~---gn~PlawSha~lI~aa~~l~ 429 (472)
T 1gai_A 380 ADGFVSIVETHAASNGSLSEQFDKSDGDEL---SARDLTWSYAALLTANNRRN 429 (472)
T ss_dssp HHHHHHHHHHHSCTTCCCCSEECTTTCCEE---SSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCcccccCCCCCCCC---CccchHHHHHHHHHHHHHHh
Confidence 5555555544333 3458999999999987 57789999999999988885
No 8
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=41.24 E-value=7.3 Score=31.07 Aligned_cols=9 Identities=78% Similarity=1.844 Sum_probs=6.0
Q ss_pred CCCCCcccc
Q 034225 20 VDQWPEYYD 28 (101)
Q Consensus 20 ~D~WPEYYD 28 (101)
.|.|||||-
T Consensus 3 ~d~~~~~~~ 11 (403)
T 3k50_A 3 VDRWPEYYP 11 (403)
T ss_dssp --CCCCCCC
T ss_pred ccchhhhcc
Confidence 589999984
No 9
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=41.14 E-value=32 Score=27.55 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=30.7
Q ss_pred CchHH---HHHHHHHHHhhhCCCC----CCccccCCCceeee---ecccc--h-----hhhHHHHHHH
Q 034225 2 GRPEL---AEKAVAMAEKRLSVDQ----WPEYYDTQSGRFIG---KQSRL--H-----QTWTIAGYLT 52 (101)
Q Consensus 2 gR~~l---A~rAi~~Ae~RL~~D~----WPEYYDgk~GR~IG---KQAR~--y-----QTWsIAGyLv 52 (101)
|+|+. |.++.+...+.+-+|. +-=+||..+|.... .|.-. | |-|-|-||+.
T Consensus 190 gd~~y~~~A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~ 257 (397)
T 2zzr_A 190 GDEKYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPL 257 (397)
T ss_dssp CCHHHHHHHHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHH
Confidence 45544 4444444445554442 22348999998873 34432 2 8999999987
No 10
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=38.99 E-value=17 Score=30.35 Aligned_cols=37 Identities=14% Similarity=-0.033 Sum_probs=28.8
Q ss_pred CCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHHc
Q 034225 20 VDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 20 ~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle 58 (101)
-.-+||=||+.+|+.+|- -.-|+||-++|+.+-+.|.
T Consensus 631 ~gllpE~~~~~~g~~~G~--a~PqaWSha~~i~~~~~l~ 667 (684)
T 1lf6_A 631 GGIISEQVWEDTGLPTDS--ASPLNWAHAEYVILFASNI 667 (684)
T ss_dssp TSCCCSCBCTTTCCBCSS--CSSCHHHHHHHHHHHHHHH
T ss_pred CCccCeeecCCCCCCCCC--CcchHHHHHHHHHHHHHHh
Confidence 357999999998887652 3569999999998865553
No 11
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=34.80 E-value=30 Score=25.49 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHcCCCc
Q 034225 42 HQTWTIAGYLTSKMLLENPAK 62 (101)
Q Consensus 42 yQTWsIAGyLvak~llenP~~ 62 (101)
-|+|.|.|++.+-..-.||..
T Consensus 305 ~qae~i~a~~~ly~~tgd~~y 325 (388)
T 2gz6_A 305 VHLESLVALAMGYRLTGRDAC 325 (388)
T ss_dssp HHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 389999999988666666553
No 12
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=34.20 E-value=78 Score=26.48 Aligned_cols=49 Identities=31% Similarity=0.403 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhC-CCCCCccccCCCceeeeecccchhhhHHHHHHHHHHHHc
Q 034225 7 AEKAVAMAEKRLS-VDQWPEYYDTQSGRFIGKQSRLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 7 A~rAi~~Ae~RL~-~D~WPEYYDgk~GR~IGKQAR~yQTWsIAGyLvak~lle 58 (101)
|+.-++.++..-. ----||=||..+|+. .+..-||||-|+|+.|-+-++
T Consensus 385 A~~~~~~~~~~a~~~GllsEqvd~~~G~~---~gn~PlawSha~lI~a~~~~~ 434 (599)
T 2vn4_A 385 ADGFLSEAAKYVPADGSLAEQFDRNSGTP---LSALHLTWSYASFLTATARRA 434 (599)
T ss_dssp HHHHHHHHHTTSCTTCCCCSEECTTTCCE---ESSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCcccccCCCCCcc---CCcchHHHHHHHHHHHHHHHh
Confidence 5555555544332 345899999999998 457899999999999887774
No 13
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=32.94 E-value=72 Score=25.98 Aligned_cols=57 Identities=16% Similarity=0.372 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHH----HhhhCC--CCCCccccCCCceeeeecc------cchhhhHHHHHHHHHHHHc
Q 034225 2 GRPELAEKAVAMA----EKRLSV--DQWPEYYDTQSGRFIGKQS------RLHQTWTIAGYLTSKMLLE 58 (101)
Q Consensus 2 gR~~lA~rAi~~A----e~RL~~--D~WPEYYDgk~GR~IGKQA------R~yQTWsIAGyLvak~lle 58 (101)
.|.|.++|...+. ++++.+ -.|+.+||++||+-+-..- =.=-.|=++|.|+++.-++
T Consensus 74 ~~~e~~~R~~~tL~~l~~~~~~r~~G~fyhwyd~~Tg~~l~~~~~d~~vStVDtg~L~~gLl~~~~yf~ 142 (424)
T 4gl3_A 74 TREQGAERMLKIVRFLSDKNTDSYHGMWAHWMNGKTGKTIPFSRKDDGADIVESAFMFEGLLAAHQYFT 142 (424)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSCCBTTBCCSEEETTTCCEECSBTTBCSEEHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhhccccccCCccccceeCCCCCCCCCcCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 4556666665553 245544 4599999999998774210 0111277888888887654
No 14
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=31.76 E-value=28 Score=23.72 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=23.3
Q ss_pred CchHHHHHHHHHHHhhhCCCCCCcccc
Q 034225 2 GRPELAEKAVAMAEKRLSVDQWPEYYD 28 (101)
Q Consensus 2 gR~~lA~rAi~~Ae~RL~~D~WPEYYD 28 (101)
..||+|..|++-|.+-=.-.+||--|-
T Consensus 40 dePEvaa~AL~~A~eapn~EGwP~VYA 66 (90)
T 2dbs_A 40 DEPEVAAQALAWAMEAPNPEGWPSVYA 66 (90)
T ss_dssp TCHHHHHHHHHHHHSCCCSSSSCEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCCCChhHHH
Confidence 368999999999988778899998884
No 15
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=30.75 E-value=42 Score=27.83 Aligned_cols=56 Identities=11% Similarity=0.263 Sum_probs=34.3
Q ss_pred chHHHHHHHHHH--HhhhC--CCCCCccccCCCceeee--ecccchhh----hHHHHHHHHHHHHc
Q 034225 3 RPELAEKAVAMA--EKRLS--VDQWPEYYDTQSGRFIG--KQSRLHQT----WTIAGYLTSKMLLE 58 (101)
Q Consensus 3 R~~lA~rAi~~A--e~RL~--~D~WPEYYDgk~GR~IG--KQAR~yQT----WsIAGyLvak~lle 58 (101)
|.|.++|...+. -.++. +-.|+.+||++||+-+- ..-.-.-| |=++|.|+|+.-.+
T Consensus 85 r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg~~lpf~~~d~~~StVDTa~L~~GlL~ar~YF~ 150 (430)
T 3eu8_A 85 REEGLRRMEKIVGFLEKADRFKGAYPHWWNGETGHVQPFGQKDNGGDLVETAFLMQGLLAVHQYYA 150 (430)
T ss_dssp HHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTCCBCCBTTTBCSEEHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhchhcCCcCccccCCCCCCcCCCCcccCcccHHHHHHHHHHHHHHHHHhc
Confidence 445555543332 12344 56799999999999762 11011222 77899999998774
No 16
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=28.61 E-value=19 Score=24.45 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.7
Q ss_pred ccccCCCceeeeecccc
Q 034225 25 EYYDTQSGRFIGKQSRL 41 (101)
Q Consensus 25 EYYDgk~GR~IGKQAR~ 41 (101)
-+|.|+||+.+|.+-|-
T Consensus 55 k~yHGkTG~V~~v~~~A 71 (96)
T 1vq8_Q 55 PRFDGQTGTVEGKQGDA 71 (96)
T ss_dssp GGGTTCEEEEEEEETTE
T ss_pred ccCCCCCeEEEeECCCE
Confidence 68999999999987664
No 17
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=24.53 E-value=58 Score=21.28 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhhh---CCCCCCccccCCCceeeeecccchhhhHHHH
Q 034225 4 PELAEKAVAMAEKRL---SVDQWPEYYDTQSGRFIGKQSRLHQTWTIAG 49 (101)
Q Consensus 4 ~~lA~rAi~~Ae~RL---~~D~WPEYYDgk~GR~IGKQAR~yQTWsIAG 49 (101)
+.-|+||++.|+.|- ....-|.=+.|+.| ..-=.|-.|.+-|
T Consensus 13 ~paA~RALaEAe~RR~~~~~~~~p~E~GG~~G----~EPtRYGDWE~kG 57 (70)
T 2k5k_A 13 PPEALRALAEAEERRRRAKALDLPKEIGGRNG----PEPVRFGDWEKKG 57 (70)
T ss_dssp CTHHHHHHHHHHTCCTTTTTCCCCCCSCCCCC----CCCCSCCCCCCCS
T ss_pred CHHHHHHHHHHHHHHHhhhhccCCcccCCCCC----CCCcccccchhcc
Confidence 456899999999884 34456777777655 4445566776665
No 18
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=24.11 E-value=39 Score=21.10 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=25.9
Q ss_pred ccchhhhHHHHHHHHHHHHcCCCcCccccccccHHHHh
Q 034225 39 SRLHQTWTIAGYLTSKMLLENPAKASLLFWEEDYELLE 76 (101)
Q Consensus 39 AR~yQTWsIAGyLvak~llenP~~l~~l~~eed~~~l~ 76 (101)
-..|.||. +....+++||....|-+...-.++.+
T Consensus 21 InPys~W~----~e~~ki~~DpRY~~l~s~~~R~e~F~ 54 (59)
T 2juc_A 21 LDKFSTWS----LQSKKIENDPDFYKIRDDTVRESLFE 54 (59)
T ss_dssp CCTTTCSH----HHHHHHSSSTTGGGSSCHHHHHHHHH
T ss_pred CCCCCchh----hhcccccCCCCeeecCChHHHHHHHH
Confidence 45799999 77888999999988877655444443
No 19
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=23.54 E-value=15 Score=22.70 Aligned_cols=9 Identities=44% Similarity=1.018 Sum_probs=6.6
Q ss_pred CccccCCCc
Q 034225 24 PEYYDTQSG 32 (101)
Q Consensus 24 PEYYDgk~G 32 (101)
|-|.|..+|
T Consensus 5 aKYR~p~~G 13 (50)
T 2l92_A 5 PKYRDPATG 13 (50)
T ss_dssp CCEECTTTC
T ss_pred CeeccCCCC
Confidence 568887776
No 20
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=23.29 E-value=5.6 Score=21.78 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.5
Q ss_pred ccccCCCceeee
Q 034225 25 EYYDTQSGRFIG 36 (101)
Q Consensus 25 EYYDgk~GR~IG 36 (101)
-||||..||-|-
T Consensus 13 gfydgeagrair 24 (26)
T 2khf_A 13 GFYDGEAGRAIR 24 (26)
T ss_dssp HHTTTHHHHTTT
T ss_pred hcccchhhhHhh
Confidence 489999998763
No 21
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=21.67 E-value=6.1 Score=22.81 Aligned_cols=6 Identities=83% Similarity=2.018 Sum_probs=5.0
Q ss_pred CCCccc
Q 034225 22 QWPEYY 27 (101)
Q Consensus 22 ~WPEYY 27 (101)
+|.|||
T Consensus 7 QW~eYY 12 (33)
T 2bn5_A 7 QWAEYY 12 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 588898
No 22
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.32 E-value=25 Score=25.87 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=27.5
Q ss_pred ccccCCCceeeeecccchhh---hHHHHHHHHHHHHcCCCcCcccccccc
Q 034225 25 EYYDTQSGRFIGKQSRLHQT---WTIAGYLTSKMLLENPAKASLLFWEED 71 (101)
Q Consensus 25 EYYDgk~GR~IGKQAR~yQT---WsIAGyLvak~llenP~~l~~l~~eed 71 (101)
-+|.|+||+.+|.+-|-|-. =-+-|=.++|.+.--|||+.-.-+.||
T Consensus 55 k~yHGkTGrV~~v~~~AvgViVnk~v~~kil~Kri~vr~eHik~sk~r~~ 104 (160)
T 2zkr_q 55 KCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDS 104 (160)
T ss_dssp GGGTTCEEEECCCCSSSEEEEEEECCSSCCSCEEEEECGGGEEEC-----
T ss_pred cccCCCCeEEEeEcCCEEEEEEEEeeCCeeeeeEEEcCHHHcCccccHHH
Confidence 68999999999998885410 001123345566667788877666553
No 23
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.91 E-value=33 Score=23.27 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=14.1
Q ss_pred ccccCCCceeeeecccc
Q 034225 25 EYYDTQSGRFIGKQSRL 41 (101)
Q Consensus 25 EYYDgk~GR~IGKQAR~ 41 (101)
-+|.|+|||..+.+-+-
T Consensus 56 k~yHGkTG~V~~vt~~A 72 (97)
T 3j21_R 56 PRFHGRTGTVVGKRGEA 72 (97)
T ss_dssp GGGTTCEEEEEEEETTE
T ss_pred cccCCCCeEEEeecCcE
Confidence 58999999999887653
Done!