Query 034226
Match_columns 101
No_of_seqs 110 out of 526
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 1.2E-32 4.1E-37 181.4 7.4 68 32-99 3-70 (89)
2 1yo3_A Dynein light chain 1; s 100.0 7.8E-32 2.7E-36 181.7 7.2 71 29-99 13-83 (102)
3 4ds1_A Dynein light chain 1, c 100.0 7.5E-32 2.6E-36 180.3 6.3 68 32-99 11-78 (97)
4 1eci_A Ectatomin; pore-forming 69.6 11 0.00037 20.2 4.5 21 55-77 16-36 (37)
5 1eci_B Ectatomin; pore-forming 57.9 3.7 0.00013 21.8 1.0 14 64-77 21-34 (34)
6 1use_A VAsp, vasodilator-stimu 57.5 19 0.00066 20.3 4.0 34 44-79 10-43 (45)
7 3e9v_A Protein BTG2; B-cell tr 55.9 16 0.00056 24.3 4.2 44 41-84 1-48 (120)
8 3ipw_A Hydrolase TATD family p 52.1 14 0.00048 28.2 3.8 56 42-97 147-220 (325)
9 1wyo_A Protein EB3, microtubul 47.7 25 0.00086 24.6 4.2 42 39-81 71-128 (159)
10 3vba_A Isopropylmalate/citrama 39.5 13 0.00043 26.5 1.6 17 77-93 49-65 (176)
11 2qjz_A Microtubule-associated 38.0 31 0.001 23.0 3.3 42 39-81 54-111 (123)
12 3id6_A NOP5, PRE mRNA splicing 37.9 36 0.0012 25.5 4.0 40 39-78 222-261 (268)
13 1wj7_A Hypothetical protein (R 36.2 9.4 0.00032 25.1 0.5 34 54-89 57-91 (104)
14 2pkp_A Homoaconitase small sub 34.1 16 0.00055 25.6 1.5 15 79-93 49-63 (170)
15 2hcu_A 3-isopropylmalate dehyd 34.0 18 0.00063 26.3 1.8 16 78-93 82-97 (213)
16 2z15_A Protein TOB1; human TOB 33.9 20 0.0007 24.2 1.9 44 41-84 7-52 (130)
17 1x5p_A Negative elongation fac 32.7 47 0.0016 19.5 3.3 21 77-97 35-56 (97)
18 3gas_A Heme oxygenase; FMN-bin 32.4 76 0.0026 23.2 5.0 54 43-98 64-120 (259)
19 1qwg_A PSL synthase;, (2R)-pho 32.4 1.1E+02 0.0038 22.8 5.9 47 38-87 107-167 (251)
20 1wf1_A RNA-binding protein RAL 32.3 37 0.0013 20.5 2.8 19 78-97 51-69 (110)
21 3i1i_A Homoserine O-acetyltran 30.7 19 0.00065 25.1 1.4 32 65-96 130-161 (377)
22 2b61_A Homoserine O-acetyltran 30.3 24 0.00082 24.9 1.9 33 64-96 136-168 (377)
23 4evy_A Aminoglycoside N(6')-ac 29.8 64 0.0022 19.9 3.8 45 29-77 16-60 (166)
24 3k6g_A Telomeric repeat-bindin 29.5 14 0.00047 24.6 0.4 42 44-85 7-63 (111)
25 2xnq_A Nuclear polyadenylated 28.9 63 0.0021 19.2 3.4 20 77-97 45-64 (97)
26 1v7l_A 3-isopropylmalate dehyd 27.5 21 0.00071 24.9 1.1 15 79-93 49-63 (163)
27 3vp5_A Transcriptional regulat 27.1 98 0.0034 19.9 4.4 29 41-69 8-40 (189)
28 2qlc_A DNA repair protein RADC 25.7 25 0.00087 23.3 1.2 31 65-97 89-120 (126)
29 3q3w_A 3-isopropylmalate dehyd 25.2 34 0.0012 24.8 1.9 15 79-93 70-84 (203)
30 2dgx_A KIAA0430 protein; RRM d 25.2 83 0.0028 18.4 3.5 11 78-88 36-46 (96)
31 3icx_A PRE mRNA splicing prote 25.1 80 0.0027 23.5 4.0 39 39-77 89-127 (255)
32 2ozb_B U4/U6 small nuclear rib 23.9 87 0.003 23.3 4.0 39 39-77 103-141 (260)
33 3d2w_A TAR DNA-binding protein 23.8 59 0.002 19.1 2.6 25 71-97 28-55 (89)
34 3zzp_A TS9, ribosomal protein 22.9 1.1E+02 0.0036 18.5 3.6 27 35-61 49-75 (77)
35 3nrg_A TETR family transcripti 22.9 1.5E+02 0.005 18.9 4.6 30 41-70 9-42 (217)
36 3nnr_A Transcriptional regulat 22.4 46 0.0016 22.0 2.0 28 42-69 2-33 (228)
37 3rcm_A TATD family hydrolase; 21.9 76 0.0026 23.3 3.3 47 43-89 108-163 (287)
38 2dst_A Hypothetical protein TT 21.2 83 0.0028 19.0 3.0 31 66-97 65-95 (131)
39 3byp_A CZRB protein; membrane 21.1 69 0.0024 18.9 2.5 22 65-87 60-81 (94)
40 2jt1_A PEFI protein; solution 20.0 96 0.0033 18.6 3.0 29 42-70 1-33 (77)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=99.97 E-value=1.2e-32 Score=181.36 Aligned_cols=68 Identities=53% Similarity=0.922 Sum_probs=65.5
Q ss_pred CCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF 99 (101)
Q Consensus 32 ~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~ 99 (101)
..+++|+.+|||++||++|+++|.+|+++|+.+++||++||++||++|||+||||||++|||+|||+-
T Consensus 3 ~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~ 70 (89)
T 3rjs_A 3 DRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHET 70 (89)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEE
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999985
No 2
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=99.97 E-value=7.8e-32 Score=181.74 Aligned_cols=71 Identities=44% Similarity=0.770 Sum_probs=64.5
Q ss_pred CCCCCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226 29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF 99 (101)
Q Consensus 29 ~~~~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~ 99 (101)
.....+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||+-
T Consensus 13 ~~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~ 83 (102)
T 1yo3_A 13 GLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHET 83 (102)
T ss_dssp -----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCC
T ss_pred ccCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeC
Confidence 34667889999999999999999999999999999999999999999999999999999999999999974
No 3
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-32 Score=180.26 Aligned_cols=68 Identities=35% Similarity=0.642 Sum_probs=65.2
Q ss_pred CCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF 99 (101)
Q Consensus 32 ~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~ 99 (101)
..+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||+-
T Consensus 11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~ 78 (97)
T 4ds1_A 11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEK 78 (97)
T ss_dssp -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECT
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcC
Confidence 56889999999999999999999999999999999999999999999999999999999999999974
No 4
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=69.55 E-value=11 Score=20.19 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=15.2
Q ss_pred HHHHHhCCchHHHHHHHHHHhcc
Q 034226 55 IAAFEKNSVEKDVAERIKKDFDK 77 (101)
Q Consensus 55 ~~al~~~~~ekdiA~~IK~~lDk 77 (101)
..-.+++ +-+||.+||++.|+
T Consensus 16 ~~~akkc--~g~iat~ik~~c~k 36 (37)
T 1eci_A 16 EPWAKKC--SGDIATYIKRECGK 36 (37)
T ss_dssp HHHHHTB--CHHHHHHHHHHHHC
T ss_pred HHHHHHc--cchHHHHHHHHhcc
Confidence 3333444 57899999999886
No 5
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=57.94 E-value=3.7 Score=21.75 Aligned_cols=14 Identities=50% Similarity=0.589 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHhcc
Q 034226 64 EKDVAERIKKDFDK 77 (101)
Q Consensus 64 ekdiA~~IK~~lDk 77 (101)
+-+||.+||++.|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T 1eci_B 21 EGSIATMIKKKCDK 34 (34)
T ss_dssp STTHHHHHHHHSCC
T ss_pred cccHHHHHHHHhCC
Confidence 46799999999875
No 6
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=57.51 E-value=19 Score=20.33 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccC
Q 034226 44 EDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKH 79 (101)
Q Consensus 44 ~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkky 79 (101)
+.++++|++..+.-+++. .++|-..|+.+|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~--K~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKV--KEEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcC
Confidence 457788888888888765 3689999999998764
No 7
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=55.86 E-value=16 Score=24.35 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHHHh--CCch--HHHHHHHHHHhcccCCCceE
Q 034226 41 DMKEDLQKEAVDIAIAAFEK--NSVE--KDVAERIKKDFDKKHGPTWH 84 (101)
Q Consensus 41 DM~~emq~~~i~~a~~al~~--~~~e--kdiA~~IK~~lDkkyG~~WH 84 (101)
||-.|.+..+-=++.-+..+ .+.. +..++.|...|-++|-+.|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46666555554444444444 3322 34689999999999999998
No 8
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=52.10 E-value=14 Score=28.17 Aligned_cols=56 Identities=18% Similarity=0.067 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHHHHh-CCc---------hHHHHHHHHHHhcccCCCceEEEEeC--------CCceeeEE
Q 034226 42 MKEDLQKEAVDIAIAAFEK-NSV---------EKDVAERIKKDFDKKHGPTWHCIVGS--------NFGNPIYF 97 (101)
Q Consensus 42 M~~emq~~~i~~a~~al~~-~~~---------ekdiA~~IK~~lDkkyG~~WHcIVGk--------~FGS~vt~ 97 (101)
-+.+.|+++.+...++-.+ ++. ..++.+.||++-....++..||.-|. ..|.|+++
T Consensus 147 ~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~~d~l~iL~~~~~~~~~gViH~FsGs~e~a~~~l~lG~yis~ 220 (325)
T 3ipw_A 147 SDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCKGVVHCFDGTEEEMNQILNEGWDIGV 220 (325)
T ss_dssp SCHHHHHHHHHHTHHHHHHCTTCCEEEEEESCHHHHHHHHHHTTCTTSCEEECSCCCCHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCeEEEEeCchHHHHHHHHHhcCCCCCcEEEEECCCCHHHHHHHHhcCcEEee
Confidence 4678999999988887777 542 47888999887655557788888776 45777654
No 9
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.73 E-value=25 Score=24.56 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=33.3
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCc----------------hHHHHHHHHHHhcccCCC
Q 034226 39 SADMKEDLQKEAVDIAIAAFEKNSV----------------EKDVAERIKKDFDKKHGP 81 (101)
Q Consensus 39 ~sDM~~emq~~~i~~a~~al~~~~~----------------ekdiA~~IK~~lDkkyG~ 81 (101)
.+.+.-++.+.+ ++.++|+++++. .-+.++.+|+++|..|++
T Consensus 71 ~a~~e~e~~~N~-k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 71 QAKLEHEYIHNF-KVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp TCCSSHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 677788877776 778888888753 247899999999999975
No 10
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=39.54 E-value=13 Score=26.47 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=13.2
Q ss_pred ccCCCceEEEEeCCCce
Q 034226 77 KKHGPTWHCIVGSNFGN 93 (101)
Q Consensus 77 kkyG~~WHcIVGk~FGS 93 (101)
++|-+.+=+|.|+|||+
T Consensus 49 ~~~~~g~IlVaG~NFG~ 65 (176)
T 3vba_A 49 KKVKPGDIIVGGKNFGC 65 (176)
T ss_dssp HHCCTTCEEEECTTBTB
T ss_pred HhcCCCCEEEeCCCccC
Confidence 34556688999999997
No 11
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=38.01 E-value=31 Score=22.97 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=32.2
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCc----------------hHHHHHHHHHHhcccCCC
Q 034226 39 SADMKEDLQKEAVDIAIAAFEKNSV----------------EKDVAERIKKDFDKKHGP 81 (101)
Q Consensus 39 ~sDM~~emq~~~i~~a~~al~~~~~----------------ekdiA~~IK~~lDkkyG~ 81 (101)
.+.++-++.+.+ ++..+|+++++. .-+.++.+|+++|..|++
T Consensus 54 ~a~~e~e~~~N~-k~lq~af~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~~~ 111 (123)
T 2qjz_A 54 QAKLEHEYIQNF-KILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 111 (123)
T ss_dssp TCCSHHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcCCC
Confidence 566667777665 778888888753 236899999999999975
No 12
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=37.91 E-value=36 Score=25.54 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=32.8
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhccc
Q 034226 39 SADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKK 78 (101)
Q Consensus 39 ~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkk 78 (101)
-+||+++..+.|...|..+++.+..-+.+.+||+..|.+-
T Consensus 222 G~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 222 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999887766678999999999874
No 13
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.21 E-value=9.4 Score=25.14 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=24.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHhcccC-CCceEEEEeC
Q 034226 54 AIAAFEKNSVEKDVAERIKKDFDKKH-GPTWHCIVGS 89 (101)
Q Consensus 54 a~~al~~~~~ekdiA~~IK~~lDkky-G~~WHcIVGk 89 (101)
|+.||..++ .|++..|..-|+..- .+.|.++.+|
T Consensus 57 Ar~AL~~~n--gDl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 57 CVIALHDCN--GDVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHT--SCHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHcC--CCHHHHHHHHHhCCCcCCceeeeccc
Confidence 666776553 467777888887764 4689998866
No 14
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=34.12 E-value=16 Score=25.58 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=12.5
Q ss_pred CCCceEEEEeCCCce
Q 034226 79 HGPTWHCIVGSNFGN 93 (101)
Q Consensus 79 yG~~WHcIVGk~FGS 93 (101)
+-+.|=+|.|+|||+
T Consensus 49 ~~~~~iivaG~nfG~ 63 (170)
T 2pkp_A 49 VKEGDVIVAGENFGC 63 (170)
T ss_dssp CCTTCEEEECTTBTB
T ss_pred CCCCCEEEecCCCCC
Confidence 456799999999997
No 15
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=34.01 E-value=18 Score=26.34 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.8
Q ss_pred cCCCceEEEEeCCCce
Q 034226 78 KHGPTWHCIVGSNFGN 93 (101)
Q Consensus 78 kyG~~WHcIVGk~FGS 93 (101)
+|.+..=+|+|+||||
T Consensus 82 ~~~~~~IlvaG~NfGc 97 (213)
T 2hcu_A 82 EYREASILITGDNFGA 97 (213)
T ss_dssp GGTTCCEEEECSSBTC
T ss_pred hhcCCcEEEecCCCCC
Confidence 5777889999999997
No 16
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=33.92 E-value=20 Score=24.18 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCch--HHHHHHHHHHhcccCCCceE
Q 034226 41 DMKEDLQKEAVDIAIAAFEKNSVE--KDVAERIKKDFDKKHGPTWH 84 (101)
Q Consensus 41 DM~~emq~~~i~~a~~al~~~~~e--kdiA~~IK~~lDkkyG~~WH 84 (101)
.|-.|.+..+-=++.-+..+.+.. +..++.|.+.|-++|-+.|.
T Consensus 7 ~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 7 GMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp CSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 455554444433333333333322 35688999999999999994
No 17
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.65 E-value=47 Score=19.53 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=14.5
Q ss_pred ccCCCceEEEEeCCCc-eeeEE
Q 034226 77 KKHGPTWHCIVGSNFG-NPIYF 97 (101)
Q Consensus 77 kkyG~~WHcIVGk~FG-S~vt~ 97 (101)
.+||....|.++++=| .||+|
T Consensus 35 ~~~G~i~~v~i~~~~g~afV~f 56 (97)
T 1x5p_A 35 SPFGNIIDLSMDPPRNCAFVTY 56 (97)
T ss_dssp TTTSCEEEEEEETTTTEEEEEE
T ss_pred hhCCCEEEEEecCCCCEEEEEE
Confidence 5689999999985423 35555
No 18
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=32.44 E-value=76 Score=23.25 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEE---eCCCceeeEEE
Q 034226 43 KEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV---GSNFGNPIYFH 98 (101)
Q Consensus 43 ~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIV---Gk~FGS~vt~~ 98 (101)
+.+.+..++++++.|-..-+. ..+...|+..++. ....|=..+ |..|+|++.|=
T Consensus 64 ~~~~r~~lV~m~~~A~~~l~l-~~l~~ei~~ll~~-~~~~~LAT~~~~G~P~~S~v~f~ 120 (259)
T 3gas_A 64 PKDYKNATIELCQSVEKTHDL-KGVEEEVKAFKEG-FDSVCLATLHPNGHVVCSYAPLM 120 (259)
T ss_dssp GGGHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHT-CSEEEEEEECTTSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHh-CCEEEEEeeCcCCCEEEEEEEEE
Confidence 347889999999999876554 4688889988884 445566666 45688887663
No 19
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=32.38 E-value=1.1e+02 Score=22.76 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=35.2
Q ss_pred eeCCCCHHHHHHHHHHHHHH-HHh---C----------CchHHHHHHHHHHhcccCCCceEEEE
Q 034226 38 KSADMKEDLQKEAVDIAIAA-FEK---N----------SVEKDVAERIKKDFDKKHGPTWHCIV 87 (101)
Q Consensus 38 ~~sDM~~emq~~~i~~a~~a-l~~---~----------~~ekdiA~~IK~~lDkkyG~~WHcIV 87 (101)
-..+||.+.+..+|+.+.+. +.- . .+..++.+.+++.||. +.|.+||
T Consensus 107 G~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~Vii 167 (251)
T 1qwg_A 107 GSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVII 167 (251)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEE
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEE
Confidence 35689999999999988776 221 1 1225688899999998 7788888
No 20
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=32.25 E-value=37 Score=20.53 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=14.0
Q ss_pred cCCCceEEEEeCCCceeeEE
Q 034226 78 KHGPTWHCIVGSNFGNPIYF 97 (101)
Q Consensus 78 kyG~~WHcIVGk~FGS~vt~ 97 (101)
+||..-.|.+.+.|| ||+|
T Consensus 51 ~~G~v~~v~i~~g~a-fV~f 69 (110)
T 1wf1_A 51 KYGRVAGCSVHKGYA-FVQY 69 (110)
T ss_dssp GGSCCSEEEEETTEE-EEEC
T ss_pred hCCCeEEEEEeCCEE-EEEE
Confidence 588888888888775 4554
No 21
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=30.72 E-value=19 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCCceeeE
Q 034226 65 KDVAERIKKDFDKKHGPTWHCIVGSNFGNPIY 96 (101)
Q Consensus 65 kdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt 96 (101)
.++|..|...+|..-....+++||.++|+.+.
T Consensus 130 ~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia 161 (377)
T 3i1i_A 130 LDVARMQCELIKDMGIARLHAVMGPSAGGMIA 161 (377)
T ss_dssp HHHHHHHHHHHHHTTCCCBSEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHH
Confidence 45666666666554334566799999998764
No 22
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=30.33 E-value=24 Score=24.87 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCCceeeE
Q 034226 64 EKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIY 96 (101)
Q Consensus 64 ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt 96 (101)
-.++|+.|...++.--....+++||.++|+.+.
T Consensus 136 ~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia 168 (377)
T 2b61_A 136 VQDIVKVQKALLEHLGISHLKAIIGGSFGGMQA 168 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEChhHHHH
Confidence 355666676666554345667799999998764
No 23
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=29.78 E-value=64 Score=19.91 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=25.5
Q ss_pred CCCCCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcc
Q 034226 29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (101)
Q Consensus 29 ~~~~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDk 77 (101)
......+.|+... .+....+.++..+.... ...+....+...++.
T Consensus 16 ~~~~~~~~ir~~~--~~D~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~ 60 (166)
T 4evy_A 16 NLYFQGMNIKPAS--EASLKDWLELRNKLWSD--SEASHLQEMHQLLAE 60 (166)
T ss_dssp ----CCEEEEECC--GGGHHHHHHHHHHHSCC--CHHHHHHHHHHHHTC
T ss_pred cCCCCCcEEEECC--HHHHHHHHHHHHHHhcC--CchHHHHHHHHHhcC
Confidence 3445567777654 44456666766665443 334456777777776
No 24
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=29.47 E-value=14 Score=24.61 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhCCch---------------HHHHHHHHHHhcccCCCceEE
Q 034226 44 EDLQKEAVDIAIAAFEKNSVE---------------KDVAERIKKDFDKKHGPTWHC 85 (101)
Q Consensus 44 ~emq~~~i~~a~~al~~~~~e---------------kdiA~~IK~~lDkkyG~~WHc 85 (101)
+.--..++++.+.++.++..+ ..-..++-.-.-..-+|.|||
T Consensus 7 ~~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 7 QPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCH
T ss_pred CCcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCCcCCCCcceee
Confidence 333445566667777666532 222234444333456788987
No 25
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=28.86 E-value=63 Score=19.22 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=14.7
Q ss_pred ccCCCceEEEEeCCCceeeEE
Q 034226 77 KKHGPTWHCIVGSNFGNPIYF 97 (101)
Q Consensus 77 kkyG~~WHcIVGk~FGS~vt~ 97 (101)
.+||..-.|.+.+.|| ||+|
T Consensus 45 ~~~G~v~~v~i~~g~a-fV~f 64 (97)
T 2xnq_A 45 SPYGHIMQINIKNAFG-FIQF 64 (97)
T ss_dssp GGGSCEEEEEECSSEE-EEEE
T ss_pred HhcCCEEEEEEeCCEE-EEEE
Confidence 3588888888888776 5555
No 26
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=27.47 E-value=21 Score=24.87 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=11.7
Q ss_pred CCCceEEEEeCCCce
Q 034226 79 HGPTWHCIVGSNFGN 93 (101)
Q Consensus 79 yG~~WHcIVGk~FGS 93 (101)
+-+.|=+|.|+|||+
T Consensus 49 ~~~g~iivag~nfG~ 63 (163)
T 1v7l_A 49 VRPGDVVVAGKNFGI 63 (163)
T ss_dssp CCTTCEEECCSSBTB
T ss_pred CCCCCEEEecCcCCC
Confidence 445788888999997
No 27
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=27.11 E-value=98 Score=19.90 Aligned_cols=29 Identities=10% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCch----HHHHH
Q 034226 41 DMKEDLQKEAVDIAIAAFEKNSVE----KDVAE 69 (101)
Q Consensus 41 DM~~emq~~~i~~a~~al~~~~~e----kdiA~ 69 (101)
.|+++.++.|++.|.+.+.+.+.+ ++||+
T Consensus 8 ~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~ 40 (189)
T 3vp5_A 8 SLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVK 40 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHCCcccccHHHHHH
Confidence 578899999999999999887632 55654
No 28
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=25.67 E-value=25 Score=23.28 Aligned_cols=31 Identities=32% Similarity=0.264 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcccCCC-ceEEEEeCCCceeeEE
Q 034226 65 KDVAERIKKDFDKKHGP-TWHCIVGSNFGNPIYF 97 (101)
Q Consensus 65 kdiA~~IK~~lDkkyG~-~WHcIVGk~FGS~vt~ 97 (101)
..+.+.|++-++---=+ .=|+|||+ |.|++|
T Consensus 89 ~~~T~~l~~a~~ll~I~llDHiIig~--~~~~Sf 120 (126)
T 2qlc_A 89 KQVTSILKKAGDLLQIELLDHVIVGN--NDWFSF 120 (126)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEECS--SCEEET
T ss_pred HHHHHHHHHHHHHCCCeEeeeEEEeC--CcEEEe
Confidence 45678888776543323 23999999 777765
No 29
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=25.24 E-value=34 Score=24.78 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=12.7
Q ss_pred CCCceEEEEeCCCce
Q 034226 79 HGPTWHCIVGSNFGN 93 (101)
Q Consensus 79 yG~~WHcIVGk~FGS 93 (101)
|.+.-=.|.|+||||
T Consensus 70 ~~~~~IlVaG~NFGc 84 (203)
T 3q3w_A 70 YQNSSILVSFENFGS 84 (203)
T ss_dssp GTTEEEEEECSSBTB
T ss_pred cCCCCEEEeCCCCCC
Confidence 777778888999997
No 30
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.22 E-value=83 Score=18.45 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=6.8
Q ss_pred cCCCceEEEEe
Q 034226 78 KHGPTWHCIVG 88 (101)
Q Consensus 78 kyG~~WHcIVG 88 (101)
+||..-.|-+-
T Consensus 36 ~~G~v~~v~i~ 46 (96)
T 2dgx_A 36 RHGKVKSVELS 46 (96)
T ss_dssp HHSCEEEEEEC
T ss_pred ccCcEEEEEEE
Confidence 46666666665
No 31
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=25.13 E-value=80 Score=23.53 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=31.2
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcc
Q 034226 39 SADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (101)
Q Consensus 39 ~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDk 77 (101)
-.|++++..+.|.+.|..+++-+..-+++.+||+..|..
T Consensus 89 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~ 127 (255)
T 3icx_A 89 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKE 127 (255)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 368899999999999988887665557788999887753
No 32
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=23.93 E-value=87 Score=23.28 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=32.0
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcc
Q 034226 39 SADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (101)
Q Consensus 39 ~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDk 77 (101)
-.+++++..+.|...|..+++-+..-+.+.+||+..|..
T Consensus 103 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~ 141 (260)
T 2ozb_B 103 GQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSF 141 (260)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999887665557788999888753
No 33
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=23.84 E-value=59 Score=19.10 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHhcccCCCceEEEEe---CCCceeeEE
Q 034226 71 IKKDFDKKHGPTWHCIVG---SNFGNPIYF 97 (101)
Q Consensus 71 IK~~lDkkyG~~WHcIVG---k~FGS~vt~ 97 (101)
|++.| .+||....|-|. |.|| ||+|
T Consensus 28 L~~~F-~~~G~i~~v~i~~~srGfa-FV~F 55 (89)
T 3d2w_A 28 LQQFF-CQYGEVVDVFIPKPFRAFA-FVTF 55 (89)
T ss_dssp HHHHH-TTTSCEEEEECCSSCCSEE-EEEE
T ss_pred HHHHH-hccCCEEEEEEeeCCCCEE-EEEE
Confidence 44445 368988888886 3465 4554
No 34
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=22.86 E-value=1.1e+02 Score=18.48 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.1
Q ss_pred eEEeeCCCCHHHHHHHHHHHHHHHHhC
Q 034226 35 IIIKSADMKEDLQKEAVDIAIAAFEKN 61 (101)
Q Consensus 35 i~I~~sDM~~emq~~~i~~a~~al~~~ 61 (101)
+.|+..|++++..+.+++.....+...
T Consensus 49 m~Il~P~l~ee~~~~~vek~~~~i~~~ 75 (77)
T 3zzp_A 49 NIVLNPNLDQSQLQNEKEIIQRALENY 75 (77)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 778999999999999999988887643
No 35
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=22.85 E-value=1.5e+02 Score=18.92 Aligned_cols=30 Identities=20% Similarity=0.540 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCch----HHHHHH
Q 034226 41 DMKEDLQKEAVDIAIAAFEKNSVE----KDVAER 70 (101)
Q Consensus 41 DM~~emq~~~i~~a~~al~~~~~e----kdiA~~ 70 (101)
.++++.++.|++.|.+.+.+.+.+ .+||+.
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 42 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITER 42 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 467889999999999999887642 455543
No 36
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=22.38 E-value=46 Score=21.99 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCch----HHHHH
Q 034226 42 MKEDLQKEAVDIAIAAFEKNSVE----KDVAE 69 (101)
Q Consensus 42 M~~emq~~~i~~a~~al~~~~~e----kdiA~ 69 (101)
|+.+.++.|++.|.+.+.+.+.+ .+||+
T Consensus 2 m~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~ 33 (228)
T 3nnr_A 2 MTMKTRDKILLSSLELFNDKGERNITTNHIAA 33 (228)
T ss_dssp --CCHHHHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhChhhcCHHHHHH
Confidence 67788999999999998876532 45554
No 37
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=21.89 E-value=76 Score=23.29 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHhcccCCCceEEEEeC
Q 034226 43 KEDLQKEAVDIAIAAFEKNSV---------EKDVAERIKKDFDKKHGPTWHCIVGS 89 (101)
Q Consensus 43 ~~emq~~~i~~a~~al~~~~~---------ekdiA~~IK~~lDkkyG~~WHcIVGk 89 (101)
+.+.|+++.+...++..+++. ..++.+.||++-....++..||.-|.
T Consensus 108 ~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~a~~~~l~il~~~~~~~~~~V~H~fsG~ 163 (287)
T 3rcm_A 108 PRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTGAVVHCFTGE 163 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHTTGGGCSCEEECSCCCC
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEEcCCcHHHHHHHHHHcCCCCCeEEEEeCCCC
Confidence 568899888877777666542 46788888876544445566765443
No 38
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=21.18 E-value=83 Score=18.99 Aligned_cols=31 Identities=6% Similarity=-0.163 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcccCCCceEEEEeCCCceeeEE
Q 034226 66 DVAERIKKDFDKKHGPTWHCIVGSNFGNPIYF 97 (101)
Q Consensus 66 diA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~ 97 (101)
++++.+...+|..-.... .+||.++|+.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~-~lvG~S~Gg~~a~ 95 (131)
T 2dst_A 65 ELAHFVAGFAVMMNLGAP-WVLLRGLGLALGP 95 (131)
T ss_dssp HHHHHHHHHHHHTTCCSC-EEEECGGGGGGHH
T ss_pred HHHHHHHHHHHHcCCCcc-EEEEEChHHHHHH
Confidence 344444444443322233 4789999988743
No 39
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=21.11 E-value=69 Score=18.94 Aligned_cols=22 Identities=0% Similarity=0.221 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcccCCCceEEEE
Q 034226 65 KDVAERIKKDFDKKHGPTWHCIV 87 (101)
Q Consensus 65 kdiA~~IK~~lDkkyG~~WHcIV 87 (101)
.+++..|++.|-++||.. ||.|
T Consensus 60 h~i~~~ie~~l~~~~~~~-~vtI 81 (94)
T 3byp_A 60 HRLCDELERALAQAFPGL-QATI 81 (94)
T ss_dssp HHHHHHHHHHHHHHSTTE-EEEE
T ss_pred HHHHHHHHHHHHHHCCCC-EEEE
Confidence 357788888888888876 8776
No 40
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.00 E-value=96 Score=18.59 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHHh---CC-chHHHHHH
Q 034226 42 MKEDLQKEAVDIAIAAFEK---NS-VEKDVAER 70 (101)
Q Consensus 42 M~~emq~~~i~~a~~al~~---~~-~ekdiA~~ 70 (101)
|++..++.|++...+-++. +. +-.|||+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~ 33 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADA 33 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHH
Confidence 7778888899888887665 33 33566653
Done!