Query 034227
Match_columns 100
No_of_seqs 110 out of 1471
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:09:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1530 Rhodanese-related sulf 99.5 5.8E-14 1.3E-18 92.4 6.1 73 26-100 20-94 (136)
2 PLN02160 thiosulfate sulfurtra 99.4 6.8E-13 1.5E-17 88.0 6.8 72 27-100 13-86 (136)
3 cd01533 4RHOD_Repeat_2 Member 99.3 2.8E-12 6.1E-17 81.2 5.9 64 24-100 5-71 (109)
4 PRK00162 glpE thiosulfate sulf 99.3 5.3E-12 1.2E-16 79.8 6.1 61 26-100 2-63 (108)
5 cd01518 RHOD_YceA Member of th 99.3 4.7E-12 1E-16 79.1 4.6 41 29-71 2-43 (101)
6 cd01519 RHOD_HSP67B2 Member of 99.3 6.2E-12 1.3E-16 78.7 4.5 67 32-100 2-71 (106)
7 cd01523 RHOD_Lact_B Member of 99.3 9.3E-12 2E-16 77.5 4.7 61 31-100 1-66 (100)
8 cd01520 RHOD_YbbB Member of th 99.2 1.5E-11 3.2E-16 80.3 4.9 39 31-71 1-39 (128)
9 cd01524 RHOD_Pyr_redox Member 99.2 2.3E-11 4.9E-16 74.6 5.4 56 31-100 1-56 (90)
10 cd01534 4RHOD_Repeat_3 Member 99.2 2.3E-11 4.9E-16 75.3 5.3 39 31-71 1-42 (95)
11 cd01527 RHOD_YgaP Member of th 99.2 1.6E-11 3.6E-16 76.2 4.4 41 29-71 2-42 (99)
12 cd01522 RHOD_1 Member of the R 99.2 9.9E-11 2.1E-15 75.4 6.4 66 31-100 1-69 (117)
13 cd01449 TST_Repeat_2 Thiosulfa 99.1 9.4E-11 2E-15 74.7 5.5 68 31-100 1-83 (118)
14 cd01526 RHOD_ThiF Member of th 99.1 8.8E-11 1.9E-15 75.9 5.2 45 26-72 5-51 (122)
15 cd01521 RHOD_PspE2 Member of t 99.1 1.1E-10 2.4E-15 74.1 5.1 60 28-100 7-69 (110)
16 cd01530 Cdc25 Cdc25 phosphatas 99.1 1.4E-10 3E-15 75.4 5.6 41 29-71 2-49 (121)
17 cd01448 TST_Repeat_1 Thiosulfa 99.1 1.9E-10 4E-15 73.9 6.0 68 31-100 2-84 (122)
18 cd01444 GlpE_ST GlpE sulfurtra 99.1 1.9E-10 4.2E-15 70.6 5.6 56 31-100 2-61 (96)
19 PF00581 Rhodanese: Rhodanese- 99.1 2E-10 4.4E-15 71.7 5.7 67 32-100 1-72 (113)
20 cd01528 RHOD_2 Member of the R 99.1 2.1E-10 4.6E-15 71.6 5.2 40 30-71 1-43 (101)
21 cd01525 RHOD_Kc Member of the 99.1 2.1E-10 4.5E-15 71.7 4.6 40 31-72 1-43 (105)
22 cd01443 Cdc25_Acr2p Cdc25 enzy 99.1 2.1E-10 4.4E-15 73.2 4.3 40 29-71 2-48 (113)
23 cd01447 Polysulfide_ST Polysul 99.0 6.5E-10 1.4E-14 68.9 4.8 40 31-72 1-42 (103)
24 COG2897 SseA Rhodanese-related 99.0 7.7E-10 1.7E-14 81.5 5.8 70 29-100 156-239 (285)
25 PRK08762 molybdopterin biosynt 99.0 1.4E-09 3E-14 82.4 5.9 60 28-100 2-62 (376)
26 cd01531 Acr2p Eukaryotic arsen 99.0 7.6E-10 1.6E-14 70.5 3.8 41 28-71 1-44 (113)
27 PLN02723 3-mercaptopyruvate su 98.9 1.5E-09 3.3E-14 80.8 5.3 68 31-100 192-274 (320)
28 PRK11493 sseA 3-mercaptopyruva 98.9 2.4E-09 5.3E-14 78.1 5.8 70 29-100 5-92 (281)
29 cd01445 TST_Repeats Thiosulfat 98.9 2.7E-09 5.9E-14 70.8 5.3 68 31-100 1-100 (138)
30 PRK09629 bifunctional thiosulf 98.9 5.1E-09 1.1E-13 83.9 6.6 70 29-100 9-86 (610)
31 PRK01415 hypothetical protein; 98.8 4E-09 8.7E-14 76.4 4.6 43 27-71 110-153 (247)
32 TIGR03865 PQQ_CXXCW PQQ-depend 98.8 1.1E-08 2.4E-13 69.7 6.5 72 24-100 31-121 (162)
33 cd01529 4RHOD_Repeats Member o 98.8 4.8E-09 1E-13 64.8 4.2 51 42-100 11-61 (96)
34 PRK09629 bifunctional thiosulf 98.8 7.8E-09 1.7E-13 82.9 5.7 69 30-100 148-228 (610)
35 PRK10287 thiosulfate:cyanide s 98.8 6.5E-09 1.4E-13 66.2 4.2 46 42-100 19-65 (104)
36 TIGR02981 phageshock_pspE phag 98.8 9.6E-09 2.1E-13 65.0 4.9 46 42-100 17-63 (101)
37 PRK05320 rhodanese superfamily 98.8 8.2E-09 1.8E-13 75.0 5.2 44 26-71 107-157 (257)
38 cd01532 4RHOD_Repeat_1 Member 98.8 6.4E-09 1.4E-13 64.1 3.9 28 42-71 9-36 (92)
39 cd01446 DSP_MapKP N-terminal r 98.8 9.2E-09 2E-13 67.1 4.1 41 30-72 1-44 (132)
40 PRK00142 putative rhodanese-re 98.8 1.3E-08 2.8E-13 75.9 5.3 64 27-100 110-176 (314)
41 PRK11493 sseA 3-mercaptopyruva 98.8 1.3E-08 2.7E-13 74.4 5.1 68 31-100 155-236 (281)
42 PRK07878 molybdopterin biosynt 98.8 1.3E-08 2.8E-13 77.7 5.1 63 26-100 284-348 (392)
43 PRK07411 hypothetical protein; 98.7 1.5E-08 3.2E-13 77.4 5.3 66 26-100 279-347 (390)
44 smart00450 RHOD Rhodanese Homo 98.7 1.4E-08 3.1E-13 61.4 4.1 57 42-100 3-61 (100)
45 cd00158 RHOD Rhodanese Homolog 98.7 1.5E-08 3.2E-13 60.6 3.7 34 36-71 2-36 (89)
46 cd01535 4RHOD_Repeat_4 Member 98.7 1.9E-08 4.2E-13 67.3 4.6 51 36-100 2-54 (145)
47 PLN02723 3-mercaptopyruvate su 98.7 5.5E-08 1.2E-12 72.4 6.1 70 29-100 22-108 (320)
48 PRK05600 thiamine biosynthesis 98.5 8.1E-08 1.8E-12 73.0 4.2 43 30-72 272-316 (370)
49 COG0607 PspE Rhodanese-related 98.5 1.9E-07 4.2E-12 58.1 4.7 28 42-71 19-47 (110)
50 PRK05597 molybdopterin biosynt 98.5 1.4E-07 2.9E-12 71.3 4.2 42 27-71 259-300 (355)
51 PRK11784 tRNA 2-selenouridine 98.5 1.9E-07 4.1E-12 70.5 4.3 38 32-71 4-41 (345)
52 TIGR03167 tRNA_sel_U_synt tRNA 98.4 2E-07 4.2E-12 69.6 3.8 27 43-71 2-28 (311)
53 PRK01269 tRNA s(4)U8 sulfurtra 98.4 3.4E-07 7.3E-12 71.7 5.0 52 35-100 399-454 (482)
54 COG2897 SseA Rhodanese-related 98.1 1.1E-05 2.5E-10 59.6 6.4 73 26-100 8-95 (285)
55 KOG3772 M-phase inducer phosph 97.7 2.7E-05 5.8E-10 58.4 3.1 46 24-71 151-203 (325)
56 KOG1529 Mercaptopyruvate sulfu 97.3 0.00021 4.4E-09 52.8 3.4 56 43-100 172-241 (286)
57 COG1054 Predicted sulfurtransf 97.1 0.00045 9.7E-09 51.5 3.2 62 28-99 112-176 (308)
58 KOG2017 Molybdopterin synthase 97.0 0.00045 9.8E-09 52.7 2.0 43 28-72 316-360 (427)
59 PRK00142 putative rhodanese-re 96.2 0.0015 3.3E-08 48.9 0.3 39 31-71 16-54 (314)
60 COG5105 MIH1 Mitotic inducer, 95.6 0.0071 1.5E-07 45.9 2.0 43 26-70 239-288 (427)
61 COG2603 Predicted ATPase [Gene 95.6 0.009 2E-07 44.7 2.4 37 33-71 5-41 (334)
62 KOG1529 Mercaptopyruvate sulfu 93.1 0.32 6.9E-06 36.2 5.7 70 29-100 5-91 (286)
63 TIGR03167 tRNA_sel_U_synt tRNA 92.5 0.31 6.6E-06 36.6 4.9 34 28-61 135-172 (311)
64 KOG1093 Predicted protein kina 88.5 0.1 2.3E-06 42.4 -0.7 43 25-71 618-660 (725)
65 PF07172 GRP: Glycine rich pro 82.6 2 4.3E-05 26.9 3.2 20 1-21 1-20 (95)
66 PRK07688 thiamine/molybdopteri 81.1 3.2 7E-05 31.4 4.4 42 27-70 275-323 (339)
67 COG1891 Uncharacterized protei 81.0 2.8 6E-05 29.7 3.7 36 28-70 5-40 (235)
68 KOG3636 Uncharacterized conser 78.8 1.2 2.6E-05 35.7 1.5 41 44-91 327-368 (669)
69 PRK11784 tRNA 2-selenouridine 75.0 9.3 0.0002 29.1 5.3 33 29-61 150-186 (345)
70 PF13350 Y_phosphatase3: Tyros 70.5 7.9 0.00017 25.8 3.7 31 27-57 26-57 (164)
71 TIGR01244 conserved hypothetic 56.2 13 0.00028 24.1 2.6 27 29-55 13-40 (135)
72 KOG1717 Dual specificity phosp 54.1 5.9 0.00013 29.8 0.7 34 30-69 5-39 (343)
73 PF04273 DUF442: Putative phos 53.5 15 0.00032 23.3 2.5 26 29-54 13-39 (110)
74 PF03720 UDPG_MGDP_dh_C: UDP-g 36.2 27 0.00058 21.6 1.6 28 24-51 75-102 (106)
75 cd04468 S1_eIF5A S1_eIF5A: Euk 35.8 37 0.00081 20.0 2.1 21 79-99 31-51 (69)
76 PF08756 YfkB: YfkB-like domai 34.7 27 0.00058 23.7 1.5 32 27-61 9-41 (153)
77 PF04343 DUF488: Protein of un 33.9 46 0.001 21.0 2.5 21 33-53 2-24 (122)
78 PLN02727 NAD kinase 28.0 2.1E+02 0.0046 25.2 5.9 66 28-100 266-346 (986)
79 KOG4278 Protein tyrosine kinas 26.5 1.1E+02 0.0024 26.3 4.0 36 10-45 449-484 (1157)
80 cd00127 DSPc Dual specificity 25.8 97 0.0021 19.2 3.0 28 44-71 29-56 (139)
81 PF07879 PHB_acc_N: PHB/PHA ac 25.3 70 0.0015 18.6 2.0 27 28-54 17-45 (64)
82 TIGR03042 PS_II_psbQ_bact phot 24.3 1.9E+02 0.0042 19.4 4.2 25 16-40 13-39 (142)
83 PRK06131 dihydroxy-acid dehydr 23.7 2E+02 0.0044 23.7 5.0 33 29-61 286-324 (571)
84 PRK02227 hypothetical protein; 20.0 2E+02 0.0044 21.0 3.9 28 28-55 5-32 (238)
No 1
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.49 E-value=5.8e-14 Score=92.40 Aligned_cols=73 Identities=41% Similarity=0.653 Sum_probs=64.0
Q ss_pred CCcceeCHHHHHHHhhC-CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhc-CCCCceeC
Q 034227 26 AEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC-KEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~-~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~-~~~~~viv 100 (100)
..+..++.++++.+++. +.++||||+|+||.+||+| .++|||+....++|.+++++|.+.+.... +.+++||+
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~--~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf 94 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIP--ASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIF 94 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCc--ceEeccccccccccccCCHHHHHHhcccCCCCCCcEEE
Confidence 56788999999999984 5999999999999999999 99999998888899999999999988754 34668774
No 2
>PLN02160 thiosulfate sulfurtransferase
Probab=99.41 E-value=6.8e-13 Score=87.95 Aligned_cols=72 Identities=57% Similarity=0.949 Sum_probs=59.0
Q ss_pred CcceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCe--eeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKI--FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA--~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
.++.++++++.++++++..+||||+++||..|||| || +|+|+..+.+.+.+.++++...+...++++++||+
T Consensus 13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIp--gA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~Iiv 86 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCE--AAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILV 86 (136)
T ss_pred eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCC--CcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEE
Confidence 58999999999998866789999999999999999 77 89998655556677777777666554578888874
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.34 E-value=2.8e-12 Score=81.21 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=50.1
Q ss_pred cCCCcceeCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 24 SGAEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
++...+.++++++.++++. +..+||||+++||+.|||| ||+|+|+. ++...+..+ .+++++||+
T Consensus 5 ~~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIp--gainip~~-----------~l~~~~~~l~~~~~~~ivv 71 (109)
T cd01533 5 AVRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIP--GSVSCPGA-----------ELVLRVGELAPDPRTPIVV 71 (109)
T ss_pred ccccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCC--CceeCCHH-----------HHHHHHHhcCCCCCCeEEE
Confidence 4556789999999998873 4689999999999999999 99999985 444444443 246777764
No 4
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.31 E-value=5.3e-12 Score=79.81 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=49.5
Q ss_pred CCcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 26 AEVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
..++.++++++.++++ ++..+||+|+++||+.|||| ||+|+|+. ++.+.+.. +++++++++
T Consensus 2 ~~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~--gA~~ip~~-----------~l~~~~~~-~~~~~~ivv 63 (108)
T PRK00162 2 DQFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAP--GAFHLTND-----------SLGAFMRQ-ADFDTPVMV 63 (108)
T ss_pred CCccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCC--CCeECCHH-----------HHHHHHHh-cCCCCCEEE
Confidence 4678999999999987 46899999999999999999 99999974 44444444 677777764
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.28 E-value=4.7e-12 Score=79.11 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=37.0
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+.|+++++.++++ ++.+|||||+++||+.|||| ||+|+|+.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~--gA~~ip~~ 43 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFK--GAVNPDVD 43 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEec--cccCCCcc
Confidence 4689999999887 46899999999999999999 99999986
No 6
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.27 E-value=6.2e-12 Score=78.71 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=48.8
Q ss_pred CHHHHHHHhh-C-CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 32 DVRAAKNLLE-S-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 32 ~~~e~~~~~~-~-~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
+++++.++++ . +.+|||+|++.||+.|||| ||+|+|+..+.....+...+|.+.+... .+++++||+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIp--gA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 71 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIP--GAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIF 71 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCC--CcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEE
Confidence 6788888887 4 5899999999999999999 9999998654322222333566655543 366788774
No 7
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.25 E-value=9.3e-12 Score=77.54 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=44.9
Q ss_pred eCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHH---HHHHHhhcCCCCceeC
Q 034227 31 VDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDF---LKKVRSLCKEEDRLVV 100 (100)
Q Consensus 31 i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~---~~~~~~~~~~~~~viv 100 (100)
|+++|+.+++++ +.+|||||+++||+.|||| ||+|+|+..+. ..+ .....+.++++++||+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~--ga~~ip~~~~~-------~~~~~~~~~~~~~~~~~~~ivv 66 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKID--GENNTPYFDPY-------FDFLEIEEDILDQLPDDQEVTV 66 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccC--CCcccccccch-------HHHHHhhHHHHhhCCCCCeEEE
Confidence 578999998874 4789999999999999999 99999985221 111 1222333678888874
No 8
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.23 E-value=1.5e-11 Score=80.27 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=36.1
Q ss_pred eCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 31 i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
||++++.++++++.+|||||+++||+.|||| ||+|+|+.
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIp--gAinip~~ 39 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLP--GAINLPLL 39 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCC--CcEEccCC
Confidence 6899999988877899999999999999999 99999985
No 9
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.23 E-value=2.3e-11 Score=74.62 Aligned_cols=56 Identities=27% Similarity=0.530 Sum_probs=44.8
Q ss_pred eCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 31 i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
++++++.+++.++.++||+|++++|..|||| ||+|+|+. ++.+.+.. +++++++|+
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hip--gA~~ip~~-----------~~~~~~~~-~~~~~~vvl 56 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIK--GAINIPLD-----------ELRDRLNE-LPKDKEIIV 56 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCC--CCEeCCHH-----------HHHHHHHh-cCCCCcEEE
Confidence 4788999988777899999999999999999 99999985 44444443 667777764
No 10
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.22 E-value=2.3e-11 Score=75.30 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=34.6
Q ss_pred eCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 31 i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
|+++|+.++++. +.++||||+++||+.|||| ||+|+|+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghip--ga~~ip~~ 42 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLP--GFRHTPGG 42 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCC--CcEeCCHH
Confidence 688999998873 3679999999999999999 99999985
No 11
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.21 E-value=1.6e-11 Score=76.19 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=37.5
Q ss_pred ceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
..++++++.++++++..+||+|+++||..|||| ||+|+|+.
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~--ga~~ip~~ 42 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIP--GARLVPLS 42 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCC--CCEECChh
Confidence 578999999988866899999999999999999 99999985
No 12
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.17 E-value=9.9e-11 Score=75.37 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=49.2
Q ss_pred eCHHHHHHHhhC--CCeEEecCChhhHh-ccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 31 VDVRAAKNLLES--GYGYLDVRTAEEFK-EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 31 i~~~e~~~~~~~--~~~lIDvR~~~e~~-~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
|+++|+.+++++ +.++||||+++||+ .|||| ||+|+|+..+... .....+..++....++++++|+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIp--gA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv 69 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVP--DAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLL 69 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCC--Cceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEE
Confidence 588999999874 58899999999999 99999 9999998643210 1123566666554577888774
No 13
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.14 E-value=9.4e-11 Score=74.68 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=50.2
Q ss_pred eCHHHHHHHhhC-CCeEEecCChhhHhc-----------cCCCCCCeeeeccccC-CCCCCCCCHHHH-HHHHhh-cCCC
Q 034227 31 VDVRAAKNLLES-GYGYLDVRTAEEFKE-----------GHVDAAKIFNIPYMFN-TPEGRVKNPDFL-KKVRSL-CKEE 95 (100)
Q Consensus 31 i~~~e~~~~~~~-~~~lIDvR~~~e~~~-----------ghIp~~gA~~ip~~~~-~~~g~~~~~~~~-~~~~~~-~~~~ 95 (100)
++++++.+++++ +.++||+|++.||.. |||| ||+|+|+..+ ...+.++.++.. +.+... ++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIp--gA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIP--GAVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCC--CCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 578999998874 589999999999976 9999 9999998754 334555555433 334433 5678
Q ss_pred CceeC
Q 034227 96 DRLVV 100 (100)
Q Consensus 96 ~~viv 100 (100)
++||+
T Consensus 79 ~~iv~ 83 (118)
T cd01449 79 KPVIV 83 (118)
T ss_pred CCEEE
Confidence 88874
No 14
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.14 E-value=8.8e-11 Score=75.91 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=39.5
Q ss_pred CCcceeCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeecccc
Q 034227 26 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~ 72 (100)
.....|+++++.+++++ +.++||+|+++||+.|||| ||+|+|+..
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIp--gai~ip~~~ 51 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLP--EAINIPLSE 51 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCC--CCeEccHHH
Confidence 45678999999998874 5789999999999999999 999999863
No 15
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.12 E-value=1.1e-10 Score=74.10 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=45.9
Q ss_pred cceeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 28 VITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
-..++++++.+++.. +.++||+|+++||..|||| ||+|+|+.. +..+....++++++||+
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIp--gA~~ip~~~-----------l~~~~~~~i~~~~~vvv 69 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVP--GAINLPHRE-----------ICENATAKLDKEKLFVV 69 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCC--CCEeCCHHH-----------hhhHhhhcCCCCCeEEE
Confidence 367999999999873 3789999999999999999 999999852 22122222677788764
No 16
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.12 E-value=1.4e-10 Score=75.36 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=36.5
Q ss_pred ceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
..|+++++.+++++ +.++||||+++||+.|||| ||+|+|+.
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~--gA~~ip~~ 49 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIK--GAVNLSTK 49 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCC--CCEeCCcH
Confidence 56899999999863 4789999999999999999 99999984
No 17
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.12 E-value=1.9e-10 Score=73.89 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=52.1
Q ss_pred eCHHHHHHHhhC-CCeEEecCCh-------hhHhccCCCCCCeeeeccccCC-----CCCCCCCH-HHHHHHHhh-cCCC
Q 034227 31 VDVRAAKNLLES-GYGYLDVRTA-------EEFKEGHVDAAKIFNIPYMFNT-----PEGRVKNP-DFLKKVRSL-CKEE 95 (100)
Q Consensus 31 i~~~e~~~~~~~-~~~lIDvR~~-------~e~~~ghIp~~gA~~ip~~~~~-----~~g~~~~~-~~~~~~~~~-~~~~ 95 (100)
++++++.++++. +..|||+|++ +||+.|||| ||+|+|+..+. ..|.+.+. +|.+.+... ++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~--ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIP--GAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISND 79 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCC--CCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 789999999874 6889999999 999999999 99999986432 24566654 555555543 5788
Q ss_pred CceeC
Q 034227 96 DRLVV 100 (100)
Q Consensus 96 ~~viv 100 (100)
++||+
T Consensus 80 ~~vv~ 84 (122)
T cd01448 80 DTVVV 84 (122)
T ss_pred CEEEE
Confidence 88875
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.11 E-value=1.9e-10 Score=70.60 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=45.1
Q ss_pred eCHHHHHHHhhC--CCeEEecCChhhHhc--cCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 31 VDVRAAKNLLES--GYGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 31 i~~~e~~~~~~~--~~~lIDvR~~~e~~~--ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
++++++.+++++ +..+||+|++.||+. |||| ||+|+|+. ++.+.+.. +++++++|+
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~--ga~~ip~~-----------~~~~~~~~-~~~~~~ivv 61 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIP--GAIHLDED-----------SLDDWLGD-LDRDRPVVV 61 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCC--CCeeCCHH-----------HHHHHHhh-cCCCCCEEE
Confidence 688999988874 489999999999999 9999 99999985 44444443 678888874
No 19
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.11 E-value=2e-10 Score=71.68 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=45.6
Q ss_pred CHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCH-HHHHHHHh---hcCCCCceeC
Q 034227 32 DVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP-DFLKKVRS---LCKEEDRLVV 100 (100)
Q Consensus 32 ~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~-~~~~~~~~---~~~~~~~viv 100 (100)
||+|++++++ ++.+|||+|++.+|+.|||| ||+|+|+..+...+..... .+...... ..+++++||+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~--ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIP--GAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBET--TEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCC--CCcccccccccccccccccccccccccccccccccccccee
Confidence 6899999985 57999999999999999999 9999998644222222222 22222222 2467777764
No 20
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.09 E-value=2.1e-10 Score=71.56 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=35.6
Q ss_pred eeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 30 TVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 30 ~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
.|+++++.++++. +.++||+|+++||+.+||| ||+|+|+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~--ga~~ip~~ 43 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLP--GFLHLPMS 43 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCC--CCEecCHH
Confidence 3789999999873 3789999999999999999 99999985
No 21
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.07 E-value=2.1e-10 Score=71.70 Aligned_cols=40 Identities=28% Similarity=0.617 Sum_probs=35.6
Q ss_pred eCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeecccc
Q 034227 31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 31 i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~ 72 (100)
||++|++++++. +.+|||+|++.||+.|||| ||+|+|+..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIp--gA~~ip~~~ 43 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIE--GSINIPFSS 43 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccC--CCEeCCHHH
Confidence 689999999873 4689999999999999999 999999864
No 22
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.06 E-value=2.1e-10 Score=73.19 Aligned_cols=40 Identities=23% Similarity=0.456 Sum_probs=35.7
Q ss_pred ceeCHHHHHHHhhCC-------CeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~~~-------~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+.+++++++++++++ .++||||++ ||..|||| ||+|+|+.
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghip--gAi~ip~~ 48 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIK--GSINLPAQ 48 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCccc--Cceecchh
Confidence 578999999998743 689999999 99999999 99999985
No 23
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.00 E-value=6.5e-10 Score=68.92 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=34.7
Q ss_pred eCHHHHHHHhh-CCCeEEecCChhhH-hccCCCCCCeeeecccc
Q 034227 31 VDVRAAKNLLE-SGYGYLDVRTAEEF-KEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 31 i~~~e~~~~~~-~~~~lIDvR~~~e~-~~ghIp~~gA~~ip~~~ 72 (100)
|+++++.++++ ++.++||+|+++|| ..|||| ||+|+|+..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIp--ga~~ip~~~ 42 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIP--GAFHAPRGM 42 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCC--CcEEcccch
Confidence 57899999887 46899999999998 579999 999999753
No 24
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.00 E-value=7.7e-10 Score=81.53 Aligned_cols=70 Identities=24% Similarity=0.423 Sum_probs=56.5
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHhc----------cCCCCCCeeeeccccC-CCCCCCCCHHHHHHHHhh--cCC
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVRSL--CKE 94 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~----------ghIp~~gA~~ip~~~~-~~~g~~~~~~~~~~~~~~--~~~ 94 (100)
..++.+++...++ .+.+|||+|+++||+. |||| ||+|+|+..+ ++.+.+++++..+.+.+. +++
T Consensus 156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIP--GAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~ 233 (285)
T COG2897 156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIP--GAINIPWTDLVDDGGLFKSPEEIARLYADAGIDP 233 (285)
T ss_pred ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCC--CCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence 4566777888777 5688999999999987 9999 9999999865 555678888887777633 789
Q ss_pred CCceeC
Q 034227 95 EDRLVV 100 (100)
Q Consensus 95 ~~~viv 100 (100)
+++||+
T Consensus 234 ~~~vI~ 239 (285)
T COG2897 234 DKEVIV 239 (285)
T ss_pred CCCEEE
Confidence 999885
No 25
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=98.96 E-value=1.4e-09 Score=82.44 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=47.9
Q ss_pred cceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
++.++++++.++++++.++||+|+++||+.|||| ||+|+|+. ++.+.+... .+++++||+
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIp--gAi~ip~~-----------~l~~~~~~~~~~~~~~Ivv 62 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAE--GALRIPRG-----------FLELRIETHLPDRDREIVL 62 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCC--CCEECCHH-----------HHHHHHhhhcCCCCCeEEE
Confidence 5789999999998877899999999999999999 99999985 333333332 267777764
No 26
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=98.95 E-value=7.6e-10 Score=70.48 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=36.0
Q ss_pred cceeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 28 VITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
++.|+++++.+++.. +.++||||++ ||..|||| ||+|+|+.
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~--gA~~ip~~ 44 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIK--GSWHYPST 44 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCC--CCEecCHH
Confidence 467899999998874 3679999999 99999999 99999985
No 27
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=98.93 E-value=1.5e-09 Score=80.75 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=52.9
Q ss_pred eCHHHHHHHhh-CCCeEEecCChhhH-----------hccCCCCCCeeeeccccC-CCCCCCCCHHHHHH-HHhh-cCCC
Q 034227 31 VDVRAAKNLLE-SGYGYLDVRTAEEF-----------KEGHVDAAKIFNIPYMFN-TPEGRVKNPDFLKK-VRSL-CKEE 95 (100)
Q Consensus 31 i~~~e~~~~~~-~~~~lIDvR~~~e~-----------~~ghIp~~gA~~ip~~~~-~~~g~~~~~~~~~~-~~~~-~~~~ 95 (100)
++.+++.+.++ ++..|||+|+++|| +.|||| ||+|+|+..+ +.+|.+++.+.+++ +.+. ++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIP--gAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~ 269 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIP--GSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLD 269 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCC--CCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCC
Confidence 67889988886 46789999999998 569999 9999998654 66788887654444 4443 6788
Q ss_pred CceeC
Q 034227 96 DRLVV 100 (100)
Q Consensus 96 ~~viv 100 (100)
++||+
T Consensus 270 ~~iv~ 274 (320)
T PLN02723 270 SPIVA 274 (320)
T ss_pred CCEEE
Confidence 89875
No 28
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=98.92 E-value=2.4e-09 Score=78.11 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=53.0
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCC----------hhhHhccCCCCCCeeeeccccCC-CC----CCCCCH-HHHHHHHhh
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRT----------AEEFKEGHVDAAKIFNIPYMFNT-PE----GRVKNP-DFLKKVRSL 91 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~----------~~e~~~ghIp~~gA~~ip~~~~~-~~----g~~~~~-~~~~~~~~~ 91 (100)
..++++++.+.++ ++.+|||+|+ +++|+.|||| ||+|+|+..+. .+ +.++.+ +|.+.+.+.
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIp--GA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIP--GAVFFDIEALSDHTSPLPHMMPRPETFAVAMREL 82 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCC--CCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 5699999999998 4789999996 7899999999 99999986542 22 233333 565555655
Q ss_pred -cCCCCceeC
Q 034227 92 -CKEEDRLVV 100 (100)
Q Consensus 92 -~~~~~~viv 100 (100)
++++++||+
T Consensus 83 Gi~~d~~VVv 92 (281)
T PRK11493 83 GVNQDKHLVV 92 (281)
T ss_pred CCCCCCEEEE
Confidence 688888875
No 29
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=98.91 E-value=2.7e-09 Score=70.80 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=50.8
Q ss_pred eCHHHHHHHhh-----CCCeEEecCCh--------hhHhc------------cCCCCCCeeeeccccC-CCCC----CCC
Q 034227 31 VDVRAAKNLLE-----SGYGYLDVRTA--------EEFKE------------GHVDAAKIFNIPYMFN-TPEG----RVK 80 (100)
Q Consensus 31 i~~~e~~~~~~-----~~~~lIDvR~~--------~e~~~------------ghIp~~gA~~ip~~~~-~~~g----~~~ 80 (100)
||++++.+.++ ++.+|||+|.. ++|.. |||| ||+++|+..+ +.++ .++
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIP--gAv~~~~~~~~~~~~~~~~~~p 78 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIP--GASFFDFEECLDEAGFEESMEP 78 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCC--CCEeeCHHHhhCcCCCCCCCCC
Confidence 57899999887 35899999987 89988 9999 9999997643 3333 344
Q ss_pred CH-HHHHHHHhh-cCCCCceeC
Q 034227 81 NP-DFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 81 ~~-~~~~~~~~~-~~~~~~viv 100 (100)
+. +|.+.+.+. ++++++||+
T Consensus 79 ~~~~~~~~~~~~GI~~~~~vVv 100 (138)
T cd01445 79 SEAEFAAMFEAKGIDLDKHLIA 100 (138)
T ss_pred CHHHHHHHHHHcCCCCCCeEEE
Confidence 43 566666655 688888875
No 30
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=98.87 E-value=5.1e-09 Score=83.92 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=55.6
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccC-----CCCCCCCCH-HHHHHHHhh-cCCCCceeC
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFN-----TPEGRVKNP-DFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~-----~~~g~~~~~-~~~~~~~~~-~~~~~~viv 100 (100)
..|++++++++++ ++.+|||+|++++|..|||| ||+|++++.. +..|.++.. +|.+.+.++ ++++++|||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIP--GAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVv 86 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIR--GARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVV 86 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCC--CcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Confidence 5799999999998 46899999999999999999 9999997532 113566654 566666665 688999885
No 31
>PRK01415 hypothetical protein; Validated
Probab=98.84 E-value=4e-09 Score=76.37 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=39.1
Q ss_pred CcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 27 EVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
..+.|+++++.++++ +++++||||++.||+.|||| ||+|+|..
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~--gAinip~~ 153 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFK--SAINPNTK 153 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcC--CCCCCChH
Confidence 457799999999998 57899999999999999999 99999975
No 32
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=98.84 E-value=1.1e-08 Score=69.65 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=49.9
Q ss_pred cCCCcceeCHHHHHHHhhC-CCeEEecCChh----hHhcc---------CCCCCCeeeeccccCCCCCCCCC---HHHHH
Q 034227 24 SGAEVITVDVRAAKNLLES-GYGYLDVRTAE----EFKEG---------HVDAAKIFNIPYMFNTPEGRVKN---PDFLK 86 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~~-~~~lIDvR~~~----e~~~g---------hIp~~gA~~ip~~~~~~~g~~~~---~~~~~ 86 (100)
....+..|+++|+.+++++ +.+|||||+++ ||..| ||| ||+|+|+... +.+.. +.|.+
T Consensus 31 ~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIP--GAv~ip~~~~---~~l~~~~~~~~~~ 105 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIP--GSLWLPNTGY---GNLAPAWQAYFRR 105 (162)
T ss_pred ccCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCC--CcEEecccCC---CCCCCchhHHHHH
Confidence 4456789999999999984 68899999876 56544 999 9999996311 11121 23555
Q ss_pred HHHhh--cCCCCceeC
Q 034227 87 KVRSL--CKEEDRLVV 100 (100)
Q Consensus 87 ~~~~~--~~~~~~viv 100 (100)
.+.+. .+++++||+
T Consensus 106 ~l~~~~~~~~d~~IVv 121 (162)
T TIGR03865 106 GLERATGGDKDRPLVF 121 (162)
T ss_pred HHHHhcCCCCCCEEEE
Confidence 55443 268888875
No 33
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=98.83 E-value=4.8e-09 Score=64.80 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=34.9
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
++.++||+|+++||+.|||| ||+|+|+..+. ...+..+.+.. .+++++||+
T Consensus 11 ~~~~iiDvR~~~~~~~~hIp--gA~~ip~~~~~-----~~~~~~~~~~~-~~~~~~ivv 61 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLP--GKRSIPGAALV-----LRSQELQALEA-PGRATRYVL 61 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCC--CcEeCCHHHhc-----CCHHHHHHhhc-CCCCCCEEE
Confidence 46899999999999999999 99999975321 11222222222 467777764
No 34
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=98.81 E-value=7.8e-09 Score=82.87 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=53.7
Q ss_pred eeCHHHHHHHhh-CCCeEEecCChhhHh--------ccCCCCCCeeeecccc-CCCCCCCCCHHHHHHH-Hhh-cCCCCc
Q 034227 30 TVDVRAAKNLLE-SGYGYLDVRTAEEFK--------EGHVDAAKIFNIPYMF-NTPEGRVKNPDFLKKV-RSL-CKEEDR 97 (100)
Q Consensus 30 ~i~~~e~~~~~~-~~~~lIDvR~~~e~~--------~ghIp~~gA~~ip~~~-~~~~g~~~~~~~~~~~-~~~-~~~~~~ 97 (100)
.++.+++.+.++ ++..|||+|+++||. .|||| ||+|+|+.. ++++|.+++++.++++ .+. ++++++
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIP--GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~ 225 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIP--GAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKE 225 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCC--CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 577899988887 467899999999994 79999 999999864 4667878876544444 333 688889
Q ss_pred eeC
Q 034227 98 LVV 100 (100)
Q Consensus 98 viv 100 (100)
||+
T Consensus 226 VVv 228 (610)
T PRK09629 226 VIT 228 (610)
T ss_pred EEE
Confidence 875
No 35
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=98.80 E-value=6.5e-09 Score=66.19 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=34.9
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
.+..+||+|+++||+.|||| ||+|+|+. ++.+.+.+. .++++++|+
T Consensus 19 ~~~~lIDvR~~~ef~~ghIp--GAiniP~~-----------~l~~~l~~l~~~~~~~IVl 65 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQ--GAINIPLK-----------EVKERIATAVPDKNDTVKL 65 (104)
T ss_pred CCCEEEECCCHHHHhcCCCC--ccEECCHH-----------HHHHHHHhcCCCCCCeEEE
Confidence 44589999999999999999 99999985 455555543 255666664
No 36
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=98.80 E-value=9.6e-09 Score=65.02 Aligned_cols=46 Identities=20% Similarity=0.471 Sum_probs=35.0
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
....+||+|+++||..|||| ||+|+|+. ++.+.+.+. .+++++||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIp--gAinip~~-----------~l~~~l~~~~~~~~~~vvl 63 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQ--GAINIPLK-----------EIKEHIATAVPDKNDTVKL 63 (101)
T ss_pred cCCEEEECCCHHHHhcCCCC--CCEECCHH-----------HHHHHHHHhCCCCCCeEEE
Confidence 45789999999999999999 99999985 444444443 356667753
No 37
>PRK05320 rhodanese superfamily protein; Provisional
Probab=98.80 E-value=8.2e-09 Score=75.02 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCcceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 26 AEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
...+.++++++.++++. +.++||||++.||+.|||| ||+|+|+.
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~--GAiniPl~ 157 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFD--GALDYRID 157 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccC--CCEeCChh
Confidence 34578999999988863 2689999999999999999 99999985
No 38
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=98.80 E-value=6.4e-09 Score=64.09 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=25.8
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
++.++||+|+++||..|||| ||+|+|+.
T Consensus 9 ~~~~liDvR~~~e~~~~hi~--ga~~ip~~ 36 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPL--WAANLPLS 36 (92)
T ss_pred CCeEEEECCCHHHHhhCCcc--cCeeCCHH
Confidence 46899999999999999999 99999985
No 39
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=98.76 E-value=9.2e-09 Score=67.09 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=36.3
Q ss_pred eeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeecccc
Q 034227 30 TVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 30 ~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~ 72 (100)
.|+++++.++++. +.++||+|++.+|+.|||| ||+|+|+..
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~--~ai~i~~~~ 44 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIR--GAVNVCCPT 44 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCccc--CcEecChHH
Confidence 4789999999973 5799999999999999999 999999863
No 40
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=98.76 E-value=1.3e-08 Score=75.88 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=47.9
Q ss_pred CcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh--cCCCCceeC
Q 034227 27 EVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVV 100 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~--~~~~~~viv 100 (100)
....++++++.++++ ++.++||||++.||+.|||| ||+|+|+..+. ++...+.+. ..++++|++
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~--GAi~ip~~~~~--------~~~~~l~~~~~~~kdk~Ivv 176 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFE--NAIEPDIETFR--------EFPPWVEENLDPLKDKKVVM 176 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCC--CCEeCCHHHhh--------hhHHHHHHhcCCCCcCeEEE
Confidence 456799999999887 46899999999999999999 99999986321 232333221 357788774
No 41
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=98.76 E-value=1.3e-08 Score=74.37 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=49.0
Q ss_pred eCHHHHHHHhh-CCCeEEecCChhhHh-----------ccCCCCCCeeeeccccCCCCCCCCCHHHHHH-HHhh-cCCCC
Q 034227 31 VDVRAAKNLLE-SGYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK-VRSL-CKEED 96 (100)
Q Consensus 31 i~~~e~~~~~~-~~~~lIDvR~~~e~~-----------~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~-~~~~-~~~~~ 96 (100)
++.+++...++ ++..|||+|+++||. .|||| ||+|+|+..+..+|.+.+++.++. +.+. +++++
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIp--gA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 232 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIP--GALNVPWTELVREGELKTTDELDAIFFGRGVSFDR 232 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCC--CcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCC
Confidence 44566665555 367899999999994 69999 999999876655677776544444 3333 57888
Q ss_pred ceeC
Q 034227 97 RLVV 100 (100)
Q Consensus 97 ~viv 100 (100)
+||+
T Consensus 233 ~ii~ 236 (281)
T PRK11493 233 PIIA 236 (281)
T ss_pred CEEE
Confidence 8875
No 42
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=98.75 E-value=1.3e-08 Score=77.67 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=47.4
Q ss_pred CCcceeCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 26 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
...+.++++|+.+++++ +..+||+|+++||+.|||| ||+|+|+..+. . ...+.. +++++++|+
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIp--GAinip~~~l~------~---~~~~~~-l~~d~~iVv 348 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIP--GAQLIPKSEIL------S---GEALAK-LPQDRTIVL 348 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCC--CCEEcChHHhc------c---hhHHhh-CCCCCcEEE
Confidence 35678999999998874 4689999999999999999 99999985221 0 012222 677888764
No 43
>PRK07411 hypothetical protein; Validated
Probab=98.74 E-value=1.5e-08 Score=77.38 Aligned_cols=66 Identities=24% Similarity=0.327 Sum_probs=48.1
Q ss_pred CCcceeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 26 AEVITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
...+.++++|+.++++. +.++||||+++||+.|||| ||+|+|+..+... ...+++.+ ++++++||+
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIp--GAiniP~~~l~~~------~~~~~l~~-l~~d~~IVv 347 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIP--GSVLVPLPDIENG------PGVEKVKE-LLNGHRLIA 347 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCC--CCEEccHHHhhcc------cchHHHhh-cCCCCeEEE
Confidence 45678999999998873 3689999999999999999 9999998633110 11123333 567777764
No 44
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=98.74 E-value=1.4e-08 Score=61.39 Aligned_cols=57 Identities=28% Similarity=0.436 Sum_probs=37.6
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccccCCC-CCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTP-EGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~-~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
++.+|||+|+++||..|||| ||+|+|+..+.. ........+.+..... .+++++||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~--ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 61 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIP--GAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVV 61 (100)
T ss_pred CCEEEEECCCHHHhccCCCC--CceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEE
Confidence 46789999999999999999 999999864422 2222222333333322 467777764
No 45
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=98.72 E-value=1.5e-08 Score=60.60 Aligned_cols=34 Identities=41% Similarity=0.642 Sum_probs=28.8
Q ss_pred HHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 36 AKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 36 ~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+.+.++ ++..+||+|++.||+.|||| ||+|+|+.
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~--ga~~~~~~ 36 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIP--GAINIPLS 36 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccC--CCEecchH
Confidence 344454 57899999999999999999 99999985
No 46
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=98.72 E-value=1.9e-08 Score=67.28 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHhhC--CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 36 AKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 36 ~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
+.+++++ ..+|||||++++|+.|||| ||+++|.. .+.+.+.. ++++++|||
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIp--gAi~~~~~-----------~l~~~l~~-l~~~~~vVv 54 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIP--GAWWVLRA-----------QLAQALEK-LPAAERYVL 54 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCC--CceeCCHH-----------HHHHHHHh-cCCCCCEEE
Confidence 4455553 4799999999999999999 99999864 44445544 566777764
No 47
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=98.66 E-value=5.5e-08 Score=72.42 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=52.4
Q ss_pred ceeCHHHHHHHhh-CCCeEEecC--------C-hhhHhccCCCCCCeeeeccccCCC-C----CCCCC-HHHHHHHHhh-
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVR--------T-AEEFKEGHVDAAKIFNIPYMFNTP-E----GRVKN-PDFLKKVRSL- 91 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR--------~-~~e~~~ghIp~~gA~~ip~~~~~~-~----g~~~~-~~~~~~~~~~- 91 (100)
..|+++++.++++ ++.+|||+| + .++|+.|||| ||+|+++..+.. . +.++. .+|.+.+.++
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIP--gAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~G 99 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIP--GALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALG 99 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCC--CCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcC
Confidence 5899999999997 478899996 3 3789999999 999999764422 1 23444 3566666665
Q ss_pred cCCCCceeC
Q 034227 92 CKEEDRLVV 100 (100)
Q Consensus 92 ~~~~~~viv 100 (100)
++++++|||
T Consensus 100 i~~~~~VVv 108 (320)
T PLN02723 100 IENKDGVVV 108 (320)
T ss_pred CCCCCEEEE
Confidence 578888875
No 48
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=98.55 E-value=8.1e-08 Score=73.01 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=36.5
Q ss_pred eeCHHHHHHHhhC-CCeEEecCChhhHhccCCCC-CCeeeecccc
Q 034227 30 TVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDA-AKIFNIPYMF 72 (100)
Q Consensus 30 ~i~~~e~~~~~~~-~~~lIDvR~~~e~~~ghIp~-~gA~~ip~~~ 72 (100)
.++++|+.+++++ +.++||||+++||+.||||+ .||+|+|+..
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~ 316 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSA 316 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHH
Confidence 5789999998874 57899999999999999983 2599999863
No 49
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.51 E-value=1.9e-07 Score=58.13 Aligned_cols=28 Identities=39% Similarity=0.641 Sum_probs=26.1
Q ss_pred CCCeEEecCChhhHhccCCCCCC-eeeeccc
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAK-IFNIPYM 71 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~g-A~~ip~~ 71 (100)
++..+||||+++||+.+||| + +.|+|..
T Consensus 19 ~~~~liDvR~~~e~~~~~i~--~~~~~ip~~ 47 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIP--GAAINIPLS 47 (110)
T ss_pred CCCEEEeccChhHhhhcCCC--cceeeeecc
Confidence 47899999999999999999 8 9999986
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=98.49 E-value=1.4e-07 Score=71.33 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=35.1
Q ss_pred CcceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
....++++++.+. .++..+||+|+++||+.|||| ||+|+|+.
T Consensus 259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIp--gAinip~~ 300 (355)
T PRK05597 259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIP--GAHNVPLS 300 (355)
T ss_pred cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCC--CCEEeCHH
Confidence 3456888888743 356899999999999999999 99999985
No 51
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=98.46 E-value=1.9e-07 Score=70.48 Aligned_cols=38 Identities=32% Similarity=0.583 Sum_probs=33.5
Q ss_pred CHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 32 DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 32 ~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+.+++.+.+.++.++||||+|.||+.|||| ||+|+|+.
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIp--gAiniPl~ 41 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIP--GAINLPLL 41 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCC--CeeeCCCC
Confidence 467777776678899999999999999999 99999985
No 52
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=98.44 E-value=2e-07 Score=69.56 Aligned_cols=27 Identities=37% Similarity=0.635 Sum_probs=25.0
Q ss_pred CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 43 ~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+..+||||+|.||+.|||| ||+|+|+.
T Consensus 2 ~~~liDVRsp~Ef~~ghip--gAiniPl~ 28 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLP--GAINLPLL 28 (311)
T ss_pred CCEEEECCCHHHHhcCCCc--CCEecccc
Confidence 4689999999999999999 99999985
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.43 E-value=3.4e-07 Score=71.66 Aligned_cols=52 Identities=10% Similarity=0.254 Sum_probs=39.1
Q ss_pred HHHHHhhCCCeEEecCChhhHhccCCCCCC----eeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 35 AAKNLLESGYGYLDVRTAEEFKEGHVDAAK----IFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 35 e~~~~~~~~~~lIDvR~~~e~~~ghIp~~g----A~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
+..+.+.++.++||||+++||+.|||| | |+|+|+. ++...+.. +++++++|+
T Consensus 399 ~~~~~~~~~~~lIDVR~~~E~~~~hI~--g~~~~a~niP~~-----------~l~~~~~~-l~~~~~iiv 454 (482)
T PRK01269 399 ETVSELPPDDVIIDIRSPDEQEDKPLK--LEGVEVKSLPFY-----------KLSTQFGD-LDQSKTYLL 454 (482)
T ss_pred HHHHhcCCCCEEEECCCHHHHhcCCCC--CCCceEEECCHH-----------HHHHHHhh-cCCCCeEEE
Confidence 344444567899999999999999999 8 9999985 44444443 677788764
No 54
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.08 E-value=1.1e-05 Score=59.58 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=55.5
Q ss_pred CCcceeCHHHHHHHhh-C-----CCeEEecCCh--hhHhccCCCCCCeeeeccccC--CC---CCCCCCH-HHHHHHHhh
Q 034227 26 AEVITVDVRAAKNLLE-S-----GYGYLDVRTA--EEFKEGHVDAAKIFNIPYMFN--TP---EGRVKNP-DFLKKVRSL 91 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~-~-----~~~lIDvR~~--~e~~~ghIp~~gA~~ip~~~~--~~---~g~~~~~-~~~~~~~~~ 91 (100)
.....|+++++.+.++ + +..+++++.. ++|..|||| ||+++++... .+ .++++++ +|.+.+.++
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIP--GAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~ 85 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIP--GAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGEL 85 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCC--CCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence 4567899999999886 3 5666766655 899999999 9999998753 22 3677775 676777776
Q ss_pred -cCCCCceeC
Q 034227 92 -CKEEDRLVV 100 (100)
Q Consensus 92 -~~~~~~viv 100 (100)
+..+.+||+
T Consensus 86 GI~~d~tVVv 95 (285)
T COG2897 86 GIRNDDTVVV 95 (285)
T ss_pred CCCCCCEEEE
Confidence 788888875
No 55
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=2.7e-05 Score=58.38 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=39.1
Q ss_pred cCCCcceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 24 SGAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
....++.|+++.++.++++ ..+|||+|-|-||..|||+ ||+|++..
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIk--gavnl~~~ 203 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIK--GAVNLYSK 203 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccc--cceecccH
Confidence 4457899999999999962 2468999999999999999 99999853
No 56
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=97.35 E-value=0.00021 Score=52.83 Aligned_cols=56 Identities=27% Similarity=0.494 Sum_probs=41.2
Q ss_pred CCeEEecCChhhHh-----------ccCCCCCCeeeeccccC-CCCCCCCCH-HHHHHHHhh-cCCCCceeC
Q 034227 43 GYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 43 ~~~lIDvR~~~e~~-----------~ghIp~~gA~~ip~~~~-~~~g~~~~~-~~~~~~~~~-~~~~~~viv 100 (100)
++..+|.|..++|. .|||| ||+|+|++.+ +++|..+++ +....+.+. ++.++|+|+
T Consensus 172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIp--Ga~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~ 241 (286)
T KOG1529|consen 172 NFQYLDARSKGRFDGTEPEPRSGATGGHIP--GAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIV 241 (286)
T ss_pred cceeeeccccccccccCCCCcccCcCccCC--CcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEE
Confidence 57899999999993 59999 9999999865 778876654 333333333 567888764
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=97.12 E-value=0.00045 Score=51.45 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=46.8
Q ss_pred cceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh--cCCCCcee
Q 034227 28 VITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLV 99 (100)
Q Consensus 28 ~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~--~~~~~~vi 99 (100)
-.-++|+|+.+++. +++++||.|..-||+-||.. ||++.+...+ .+|..++.+. .-++++|+
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~--gAv~p~~~tF--------refP~~v~~~~~~~~~KkVv 176 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFE--GAVEPDIETF--------REFPAWVEENLDLLKDKKVV 176 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeec--CccCCChhhh--------hhhHHHHHHHHHhccCCcEE
Confidence 35689999999998 68999999999999999999 9999876422 2555555443 23455664
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=96.95 E-value=0.00045 Score=52.68 Aligned_cols=43 Identities=30% Similarity=0.329 Sum_probs=38.3
Q ss_pred cceeCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeecccc
Q 034227 28 VITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~ 72 (100)
-..|+..|+++.++. ..+++|||++-||+-.|+| +|+|||+..
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP--~avNIPL~~ 360 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLP--EAVNIPLKE 360 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecc--cccccchhh
Confidence 467999999999984 5799999999999999999 999999864
No 59
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.17 E-value=0.0015 Score=48.85 Aligned_cols=39 Identities=10% Similarity=-0.065 Sum_probs=33.8
Q ss_pred eCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 31 i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
-+++++++.+.+....+|+|+...|+.+||+ |++++|..
T Consensus 16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIn--gtis~~~~ 54 (314)
T PRK00142 16 EDPEAFRDEHLALCKSLGLKGRILVAEEGIN--GTVSGTIE 54 (314)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEEcCCCce--EEEEecHH
Confidence 4578888877766788999999999999999 99999974
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=95.65 E-value=0.0071 Score=45.90 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=36.9
Q ss_pred CCcceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeecc
Q 034227 26 AEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~ 70 (100)
..++.|+++.+++.++. ..+|||+|=+-||..|||. +|+||.-
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIi--naVNi~s 288 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHII--NAVNISS 288 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceee--eeeecch
Confidence 35789999999998862 3469999999999999999 9999863
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=95.63 E-value=0.009 Score=44.70 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=30.8
Q ss_pred HHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 33 VRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 33 ~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
.++...++.++..+||||.|-||..|+.| +++|+|..
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~--ia~nl~~~ 41 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMP--IAINLPLM 41 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccch--hhhccccc
Confidence 34555555578999999999999999999 99999973
No 62
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=93.12 E-value=0.32 Score=36.20 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=49.9
Q ss_pred ceeCHHHHHHHhh-CCCeEEecC---------ChhhHhccCCCCCCeeeeccccC-----CCCCCCCC-HHHHHHHHhh-
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVR---------TAEEFKEGHVDAAKIFNIPYMFN-----TPEGRVKN-PDFLKKVRSL- 91 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR---------~~~e~~~ghIp~~gA~~ip~~~~-----~~~g~~~~-~~~~~~~~~~- 91 (100)
..++++.+.+.+. .+.+|||.. ...||...||| ||.++.++.. ..+++++. +.|.+....+
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hip--ga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIP--GASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCC--CceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 4578888888887 478999974 12366779999 9999987653 22466666 4677777765
Q ss_pred cCCCCceeC
Q 034227 92 CKEEDRLVV 100 (100)
Q Consensus 92 ~~~~~~viv 100 (100)
++++..+||
T Consensus 83 i~n~d~vVi 91 (286)
T KOG1529|consen 83 VDNGDHVVI 91 (286)
T ss_pred CCCCCeEEE
Confidence 677777764
No 63
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=92.47 E-value=0.31 Score=36.56 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=29.3
Q ss_pred cceeCHHHHHHHhh-CCCeEEecCChhhHhc---cCCC
Q 034227 28 VITVDVRAAKNLLE-SGYGYLDVRTAEEFKE---GHVD 61 (100)
Q Consensus 28 ~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~---ghIp 61 (100)
...+..+++.+.+. .+..+||+|+.++|+. ||++
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 46678899988887 5689999999999987 9998
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=88.47 E-value=0.1 Score=42.40 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=37.1
Q ss_pred CCCcceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 25 GAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 25 ~~~~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
....+.+++++++.+ +...++|.|...||+.+|++ +++|+|+.
T Consensus 618 se~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s--~s~nip~~ 660 (725)
T KOG1093|consen 618 SEHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFS--DSINIPFN 660 (725)
T ss_pred hhcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhcc--ccccCCcc
Confidence 446788999988776 45789999999999999999 99999986
No 65
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=82.59 E-value=2 Score=26.90 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=12.2
Q ss_pred CcchhhHHHHHHHHHHHHHHh
Q 034227 1 MGVSRNWVTFLRGLFLLLLIC 21 (100)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (100)
|+ |+..|+...++.++++++
T Consensus 1 Ma-SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHH
Confidence 78 888776655554444433
No 66
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.13 E-value=3.2 Score=31.36 Aligned_cols=42 Identities=12% Similarity=-0.063 Sum_probs=32.7
Q ss_pred CcceeCHHHHHHHhh-------CCCeEEecCChhhHhccCCCCCCeeeecc
Q 034227 27 EVITVDVRAAKNLLE-------SGYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~-------~~~~lIDvR~~~e~~~ghIp~~gA~~ip~ 70 (100)
....++++++.++++ .+..+||+|++. |+-.++|+ |...|--
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~-gr~~i~g 323 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD-GRVLVHG 323 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC-CCEEEEC
Confidence 457799999988873 357899999988 99999997 4545543
No 67
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.01 E-value=2.8 Score=29.69 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=27.9
Q ss_pred cceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeecc
Q 034227 28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~ 70 (100)
+..|+.+|+.+.+..++-||||..|+| |++ || |+||
T Consensus 5 vSPin~eEA~eAieGGAdIiDVKNP~E---GSL---GA-NFPW 40 (235)
T COG1891 5 VSPINREEAIEAIEGGADIIDVKNPAE---GSL---GA-NFPW 40 (235)
T ss_pred eccCCHHHHHHHhhCCCceEeccCccc---Ccc---cC-CChH
Confidence 567888999998888899999999886 332 22 6777
No 68
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=78.85 E-value=1.2 Score=35.67 Aligned_cols=41 Identities=27% Similarity=0.530 Sum_probs=29.9
Q ss_pred CeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCC-CHHHHHHHHhh
Q 034227 44 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK-NPDFLKKVRSL 91 (100)
Q Consensus 44 ~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~-~~~~~~~~~~~ 91 (100)
..+||+|+.++|..||.- .|.|..-..+ +. +.+|...+.++
T Consensus 327 FFiVDcRpaeqynaGHls--taFhlDc~lm-----lqeP~~Fa~av~sL 368 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLS--TAFHLDCVLM-----LQEPEKFAIAVNSL 368 (669)
T ss_pred EEEEeccchhhcccccch--hhhcccHHHH-----hcCHHHHHHHHHHH
Confidence 468999999999999999 8888764322 22 23677666554
No 69
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=74.97 E-value=9.3 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=24.4
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHhc---cCCC
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFKE---GHVD 61 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~---ghIp 61 (100)
....-+++...+. .+..+||+|++++|+. |+++
T Consensus 150 TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~ 186 (345)
T PRK11784 150 TGSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLG 186 (345)
T ss_pred CcccHHHHHHHHHhcCCeEEECCchhhhccccccCCC
Confidence 3344667767676 5788999999999973 6666
No 70
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=70.51 E-value=7.9 Score=25.75 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=18.8
Q ss_pred CcceeCHHHHHHHhhCC-CeEEecCChhhHhc
Q 034227 27 EVITVDVRAAKNLLESG-YGYLDVRTAEEFKE 57 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~~~-~~lIDvR~~~e~~~ 57 (100)
....+|.++...+.+=+ ..|||.|++.|.+.
T Consensus 26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~ 57 (164)
T PF13350_consen 26 NLSNLTEADLERLRELGIRTIIDLRSPTERER 57 (164)
T ss_dssp --TT--HHHHHHHHHTT--EEEE-S-HHHHHH
T ss_pred CcCcCCHHHHHHHHhCCCCEEEECCCcccccc
Confidence 45668888887766534 68999999999865
No 71
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=56.25 E-value=13 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=20.8
Q ss_pred ceeCHHHHHHHhhCC-CeEEecCChhhH
Q 034227 29 ITVDVRAAKNLLESG-YGYLDVRTAEEF 55 (100)
Q Consensus 29 ~~i~~~e~~~~~~~~-~~lIDvR~~~e~ 55 (100)
..++++++..+.+.| ..|||.|++.|-
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~ 40 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREE 40 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence 668889887765555 589999988763
No 72
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=54.06 E-value=5.9 Score=29.77 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=25.6
Q ss_pred eeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeec
Q 034227 30 TVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIP 69 (100)
Q Consensus 30 ~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip 69 (100)
.++.+++...+. .+.+++|+|+ +..||. +|.++-
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~--~A~~va 39 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIE--SAINVA 39 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhh--hhhhhc
Confidence 467788888777 5789999999 567888 555553
No 73
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=53.46 E-value=15 Score=23.34 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=17.1
Q ss_pred ceeCHHHHHHHhhCC-CeEEecCChhh
Q 034227 29 ITVDVRAAKNLLESG-YGYLDVRTAEE 54 (100)
Q Consensus 29 ~~i~~~e~~~~~~~~-~~lIDvR~~~e 54 (100)
..++++++.++.+.| ..||+.|+..|
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E 39 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGE 39 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCC
Confidence 578999999887777 57999997754
No 74
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=36.25 E-value=27 Score=21.59 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=19.4
Q ss_pred cCCCcceeCHHHHHHHhhCCCeEEecCC
Q 034227 24 SGAEVITVDVRAAKNLLESGYGYLDVRT 51 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~~~~~lIDvR~ 51 (100)
....+..++.+++...+..+.+|+|.|.
T Consensus 75 ~h~~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 75 DHDEFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp --GGGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred cCHHHhccCHHHHHHhcCCCCEEEECcc
Confidence 3456777788888777755678888885
No 75
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=35.85 E-value=37 Score=19.96 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHhhcCCCCcee
Q 034227 79 VKNPDFLKKVRSLCKEEDRLV 99 (100)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~vi 99 (100)
++..+.-+++++.++.++.++
T Consensus 31 lP~~elg~~I~~~f~~gk~~~ 51 (69)
T cd04468 31 LPEGELGKEIREKFDEGKDVL 51 (69)
T ss_pred CCcHHHHHHHHHHHhCCCcEE
Confidence 334467777776666666654
No 76
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=34.69 E-value=27 Score=23.66 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=26.6
Q ss_pred CcceeCHHHHHHHhhCCCeEEecCChhhHh-ccCCC
Q 034227 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFK-EGHVD 61 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~~~~~lIDvR~~~e~~-~ghIp 61 (100)
..+.++.+|.++.+. .++|+|++.-|. .|..|
T Consensus 9 ~L~vLsL~e~r~aIh---~LLd~Rd~~~WMLFGTLP 41 (153)
T PF08756_consen 9 NLEVLSLDEMREAIH---RLLDIRDPNVWMLFGTLP 41 (153)
T ss_pred hCccCCHHHHHHHHH---HHHhccCCCeeEEecccc
Confidence 457788888888775 799999999997 58888
No 77
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=33.87 E-value=46 Score=21.01 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=14.3
Q ss_pred HHHHHHHhh-CC-CeEEecCChh
Q 034227 33 VRAAKNLLE-SG-YGYLDVRTAE 53 (100)
Q Consensus 33 ~~e~~~~~~-~~-~~lIDvR~~~ 53 (100)
.+++.+.+. .+ .++||||...
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCC
Confidence 466777665 45 4899999544
No 78
>PLN02727 NAD kinase
Probab=27.96 E-value=2.1e+02 Score=25.24 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=39.7
Q ss_pred cceeCHHHHHHHhhCC-CeEEecCChhhHh------------ccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhc-C
Q 034227 28 VITVDVRAAKNLLESG-YGYLDVRTAEEFK------------EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC-K 93 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~~-~~lIDvR~~~e~~------------~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~-~ 93 (100)
-.++++++++++.+.| -.||+.|+..|-. .+.+ .-+|+|... +..+.++..+++.+.+ +
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL---~yVhIPVs~----~~apt~EqVe~fa~~l~~ 338 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKI---EVVKIPVEV----RTAPSAEQVEKFASLVSD 338 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCC---eEEEeecCC----CCCCCHHHHHHHHHHHHh
Confidence 4678999998877777 4799999877720 1223 256677531 1223445555555545 3
Q ss_pred -CCCceeC
Q 034227 94 -EEDRLVV 100 (100)
Q Consensus 94 -~~~~viv 100 (100)
..+||++
T Consensus 339 slpkPVLv 346 (986)
T PLN02727 339 SSKKPIYL 346 (986)
T ss_pred hcCCCEEE
Confidence 4677653
No 79
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=26.51 E-value=1.1e+02 Score=26.26 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhcCCCcceeCHHHHHHHhhCCCe
Q 034227 10 FLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYG 45 (100)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~ 45 (100)
.|++=++|+-.+.+.|..++.|+..++..+++.++.
T Consensus 449 VWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyR 484 (1157)
T KOG4278|consen 449 VWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYR 484 (1157)
T ss_pred hHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhcccc
Confidence 377777777778889999999999999999986644
No 80
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=25.84 E-value=97 Score=19.22 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=16.7
Q ss_pred CeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 44 YGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 44 ~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
..+||+++..++...+.++-.-.++|+.
T Consensus 29 ~~VI~l~~~~~~~~~~~~~~~~~~~~~~ 56 (139)
T cd00127 29 THVLNVAKEVPNENLFLSDFNYLYVPIL 56 (139)
T ss_pred CEEEEcccCCCCcccCCCCceEEEEEce
Confidence 5899999988862222221134566664
No 81
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=25.32 E-value=70 Score=18.63 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=21.1
Q ss_pred cceeCHHHHHHHhhC--CCeEEecCChhh
Q 034227 28 VITVDVRAAKNLLES--GYGYLDVRTAEE 54 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~--~~~lIDvR~~~e 54 (100)
-.-|+.+++.+++.+ ++.++|..+-+.
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 355889999999974 588999998443
No 82
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=24.29 E-value=1.9e+02 Score=19.39 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=15.5
Q ss_pred HHHHHhhhcCC--CcceeCHHHHHHHh
Q 034227 16 LLLLICRSSGA--EVITVDVRAAKNLL 40 (100)
Q Consensus 16 ~~~~~~~~~~~--~~~~i~~~e~~~~~ 40 (100)
..++.+|.... ..++++++++.+..
T Consensus 13 ~~~Lvsc~~p~~~~p~tysp~~l~~i~ 39 (142)
T TIGR03042 13 LTFLVSCSGPAAAVPPTYSPAQLAQIQ 39 (142)
T ss_pred HHHHHHcCCCcccCCCCCCHHHHHHHH
Confidence 33355666433 35689999886644
No 83
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=23.69 E-value=2e+02 Score=23.70 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=24.8
Q ss_pred ceeCHHHHHHHhhCCCeEEecCChhhH------hccCCC
Q 034227 29 ITVDVRAAKNLLESGYGYLDVRTAEEF------KEGHVD 61 (100)
Q Consensus 29 ~~i~~~e~~~~~~~~~~lIDvR~~~e~------~~ghIp 61 (100)
-.++.+++.+.-..-..|.|+++...| +.|.+|
T Consensus 286 i~l~l~dfd~is~~vP~l~~l~P~G~~~~~d~~~aGGvp 324 (571)
T PRK06131 286 VELDLDDWDRIGRDVPVLVNLQPSGEYLMEDFYYAGGLP 324 (571)
T ss_pred CCCCHHHHHHHhccCCeeEEecCCCcccHHHHHHccCHH
Confidence 457889887755455689999988777 457777
No 84
>PRK02227 hypothetical protein; Provisional
Probab=20.03 E-value=2e+02 Score=20.97 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.5
Q ss_pred cceeCHHHHHHHhhCCCeEEecCChhhH
Q 034227 28 VITVDVRAAKNLLESGYGYLDVRTAEEF 55 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~~~~lIDvR~~~e~ 55 (100)
+...+.+|+...+..+.=|||+-+|+|=
T Consensus 5 vSvr~~eEA~~Al~~GaDiIDvK~P~~G 32 (238)
T PRK02227 5 VSVRNLEEALEALAGGADIIDVKNPKEG 32 (238)
T ss_pred eccCCHHHHHHHHhcCCCEEEccCCCCC
Confidence 4567889998888888899999998873
Done!