Your job contains 1 sequence.
>034230
MLPQGVKKTVIDNPKKLANLIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDP
NNKNVVNCDQKLRSILMGKSRVELAELPALIKLHFPKDPK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034230
(100 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116302 - symbol:AT4G26810 "AT4G26810" species... 432 1.2e-40 1
TAIR|locus:505006294 - symbol:AT2G35605 "AT2G35605" speci... 174 2.7e-13 1
TAIR|locus:2028671 - symbol:AT1G31760 "AT1G31760" species... 163 3.9e-12 1
TAIR|locus:2116189 - symbol:AT4G34290 "AT4G34290" species... 151 7.4e-11 1
TAIR|locus:2060469 - symbol:AT2G14880 "AT2G14880" species... 144 4.1e-10 1
SGD|S000005821 - symbol:UAF30 "Subunit of UAF (upstream a... 140 1.2e-09 1
TAIR|locus:2096404 - symbol:AT3G03590 "AT3G03590" species... 135 3.6e-09 1
UNIPROTKB|G4MMD0 - symbol:MGG_01988 "Uncharacterized prot... 127 8.6e-08 1
POMBASE|SPCC285.17 - symbol:spp27 "RNA polymerase I upstr... 124 1.0e-07 1
TAIR|locus:2010197 - symbol:AT1G49520 "AT1G49520" species... 124 3.3e-07 1
TAIR|locus:2132055 - symbol:AT4G22360 "AT4G22360" species... 123 4.5e-07 1
TAIR|locus:2085894 - symbol:AT3G19080 species:3702 "Arabi... 120 1.3e-06 1
SGD|S000004846 - symbol:TRI1 "Non-essential sumoylated pr... 112 2.2e-06 1
UNIPROTKB|F1NJN5 - symbol:SMARCD3 "Uncharacterized protei... 113 7.2e-06 1
ZFIN|ZDB-GENE-080509-2 - symbol:smarcd3b "SWI/SNF related... 112 9.7e-06 1
WB|WBGene00015971 - symbol:swsn-2.2 species:6239 "Caenorh... 110 1.5e-05 1
ASPGD|ASPL0000017588 - symbol:AN10524 species:162425 "Eme... 107 3.3e-05 1
FB|FBgn0025463 - symbol:Bap60 "Brahma associated protein ... 105 6.1e-05 1
UNIPROTKB|Q17QK5 - symbol:SMARCD3 "SWI/SNF related, matri... 102 0.00011 1
UNIPROTKB|Q6STE5 - symbol:SMARCD3 "SWI/SNF-related matrix... 102 0.00012 1
MGI|MGI:1914243 - symbol:Smarcd3 "SWI/SNF related, matrix... 102 0.00012 1
UNIPROTKB|F1SSN0 - symbol:SMARCD3 "Uncharacterized protei... 102 0.00012 1
RGD|1311869 - symbol:Smarcd3 "SWI/SNF related, matrix ass... 101 0.00015 1
UNIPROTKB|F1MTG9 - symbol:SMARCD1 "SWI/SNF-related matrix... 101 0.00017 1
UNIPROTKB|Q2TBN1 - symbol:SMARCD1 "SWI/SNF-related matrix... 101 0.00017 1
UNIPROTKB|Q96GM5 - symbol:SMARCD1 "SWI/SNF-related matrix... 101 0.00017 1
MGI|MGI:1933623 - symbol:Smarcd1 "SWI/SNF related, matrix... 101 0.00017 1
RGD|1305406 - symbol:Smarcd1 "SWI/SNF related, matrix ass... 101 0.00017 1
UNIPROTKB|H9KZE0 - symbol:SMARCD1 "Uncharacterized protei... 101 0.00017 1
FB|FBgn0035370 - symbol:CG1240 species:7227 "Drosophila m... 92 0.00047 1
ASPGD|ASPL0000053508 - symbol:AN0360 species:162425 "Emer... 91 0.00078 1
WB|WBGene00020779 - symbol:T24G10.2 species:6239 "Caenorh... 92 0.00087 1
>TAIR|locus:2116302 [details] [associations]
symbol:AT4G26810 "AT4G26810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL035440 EMBL:AL161565
SUPFAM:SSF47592 HOGENOM:HOG000225318 EMBL:BT010795 EMBL:BT011270
IPI:IPI00527090 PIR:T04804 RefSeq:NP_001119064.1 RefSeq:NP_194411.1
UniGene:At.32149 ProteinModelPortal:Q9SZ21 SMR:Q9SZ21 IntAct:Q9SZ21
PRIDE:Q9SZ21 DNASU:828788 EnsemblPlants:AT4G26810.1
EnsemblPlants:AT4G26810.2 GeneID:828788 KEGG:ath:AT4G26810
TAIR:At4g26810 eggNOG:NOG291903 InParanoid:Q9SZ21 OMA:MSHISFF
PhylomeDB:Q9SZ21 ProtClustDB:CLSN2686051 ArrayExpress:Q9SZ21
Genevestigator:Q9SZ21 Uniprot:Q9SZ21
Length = 106
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 81/100 (81%), Positives = 90/100 (90%)
Query: 1 MLPQGVKKTVIDNPKKLANLIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDP 60
MLPQ +KK + DNPKKL NLIDLVNLPSTLR FVGQS+ISRLGCFMRVWSYIKTNNLQDP
Sbjct: 1 MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60
Query: 61 NNKNVVNCDQKLRSILMGKSRVELAELPALIKLHFPKDPK 100
NKNVV CD+KL+SIL+GK RVEL +LP+LIKLHFPK+ K
Sbjct: 61 KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100
>TAIR|locus:505006294 [details] [associations]
symbol:AT2G35605 "AT2G35605" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC006068 EMBL:AC005314
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 EMBL:AF370234 EMBL:AY059124 EMBL:AY088833
EMBL:AK118403 IPI:IPI00544861 RefSeq:NP_565810.1 UniGene:At.19064
ProteinModelPortal:Q93W30 SMR:Q93W30 STRING:Q93W30 PaxDb:Q93W30
PRIDE:Q93W30 EnsemblPlants:AT2G35605.1 GeneID:818127
KEGG:ath:AT2G35605 TAIR:At2g35605 InParanoid:Q93W30 OMA:AVKKIWE
PhylomeDB:Q93W30 ProtClustDB:CLSN2688164 ArrayExpress:Q93W30
Genevestigator:Q93W30 Uniprot:Q93W30
Length = 109
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 31/97 (31%), Positives = 54/97 (55%)
Query: 1 MLPQGVKKTVIDNPKKLANLIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDP 60
++ + T ++ ++ +V + L F+G++ +SR ++W YIK NNLQ+P
Sbjct: 11 LMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNP 70
Query: 61 NNKNVVNCDQKLRSILMGKSRVELAELPALIKLHFPK 97
NK + CD++L++I GK V E+ L+ HFPK
Sbjct: 71 VNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPK 107
>TAIR|locus:2028671 [details] [associations]
symbol:AT1G31760 "AT1G31760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AC074360 EMBL:AC079041
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 ProtClustDB:CLSN2688164 EMBL:AY085089
EMBL:BT024754 IPI:IPI00536805 PIR:B86441 RefSeq:NP_564382.1
UniGene:At.40279 ProteinModelPortal:Q9C504 SMR:Q9C504 IntAct:Q9C504
STRING:Q9C504 PaxDb:Q9C504 PRIDE:Q9C504 EnsemblPlants:AT1G31760.1
GeneID:840063 KEGG:ath:AT1G31760 TAIR:At1g31760 InParanoid:Q9C504
OMA:GITEIMK PhylomeDB:Q9C504 Genevestigator:Q9C504 Uniprot:Q9C504
Length = 112
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 30 LREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA 89
L F G+ ++R +VW Y+K +NLQ+P NK ++CD KL++I GK +V + E+
Sbjct: 43 LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102
Query: 90 LIKLHFPK 97
L+ HFPK
Sbjct: 103 LLSPHFPK 110
>TAIR|locus:2116189 [details] [associations]
symbol:AT4G34290 "AT4G34290" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
EMBL:AL035521 EMBL:AL161585 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 ProtClustDB:CLSN2685737 EMBL:BT001198 IPI:IPI00535550
PIR:T04775 RefSeq:NP_195155.1 UniGene:At.2612
ProteinModelPortal:Q9SYZ4 SMR:Q9SYZ4 STRING:Q9SYZ4 PRIDE:Q9SYZ4
EnsemblPlants:AT4G34290.1 GeneID:829579 KEGG:ath:AT4G34290
TAIR:At4g34290 InParanoid:Q9SYZ4 OMA:REPRGIM PhylomeDB:Q9SYZ4
Genevestigator:Q9SYZ4 Uniprot:Q9SYZ4
Length = 144
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 30 LREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA 89
+++ VG I R R+W+YIK ++LQDP NK + CD+KL+ I GK RV E+
Sbjct: 78 MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137
Query: 90 LIKLHF 95
LI HF
Sbjct: 138 LIGPHF 143
>TAIR|locus:2060469 [details] [associations]
symbol:AT2G14880 "AT2G14880" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:AC005396
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF47592
eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151 EMBL:AF370580
IPI:IPI00517159 PIR:E84522 RefSeq:NP_565366.1 UniGene:At.13059
ProteinModelPortal:O82326 SMR:O82326 STRING:O82326 PaxDb:O82326
PRIDE:O82326 EnsemblPlants:AT2G14880.1 GeneID:815977
KEGG:ath:AT2G14880 TAIR:At2g14880 HOGENOM:HOG000225318
InParanoid:O82326 OMA:QDIVELP PhylomeDB:O82326
ProtClustDB:CLSN2685737 Genevestigator:O82326 Uniprot:O82326
Length = 141
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 30 LREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA 89
+++ V I+R R+W+YIK ++LQDP NK + CD+KL+ I G+ RV E+
Sbjct: 75 MQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAK 134
Query: 90 LIKLHF 95
LI HF
Sbjct: 135 LIGPHF 140
>SGD|S000005821 [details] [associations]
symbol:UAF30 "Subunit of UAF (upstream activation factor)"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0001168
"RNA polymerase I upstream control element sequence-specific DNA
binding transcription factor activity" evidence=IMP] [GO:0001165
"RNA polymerase I upstream control element sequence-specific DNA
binding" evidence=IDA] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000500 "RNA
polymerase I upstream activating factor complex" evidence=IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000005821
EMBL:BK006948 GO:GO:0006355 Gene3D:1.10.10.60 GO:GO:0006325
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 GO:GO:0042790
GO:GO:0000500 GO:GO:0001165 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 RefSeq:NP_014940.4 GeneID:854472 KEGG:sce:YOR297C
GeneTree:ENSGT00390000006048 HOGENOM:HOG000000765 KO:K15223
OrthoDB:EOG486CP2 EMBL:Z75203 PIR:S67199 RefSeq:NP_014938.3
ProteinModelPortal:Q08747 SMR:Q08747 IntAct:Q08747 STRING:Q08747
EnsemblFungi:YOR295W GeneID:854470 KEGG:sce:YOR295W CYGD:YOR295w
OMA:EDNENDT NextBio:976765 Genevestigator:Q08747 GermOnline:YOR295W
Uniprot:Q08747
Length = 228
Score = 140 (54.3 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 24 VNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVE 83
V L +L +G+ ++R R+W+YIK +NLQ+PNNK + CD+KL IL GKS
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL-GKS-TN 181
Query: 84 LAELPALIKLHFPKDPK 100
+ E+ ++ H +PK
Sbjct: 182 MFEMHKILASHMT-EPK 197
>TAIR|locus:2096404 [details] [associations]
symbol:AT3G03590 "AT3G03590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0006661 "phosphatidylinositol biosynthetic
process" evidence=RCA] InterPro:IPR003121 Pfam:PF02201
EMBL:CP002686 EMBL:AC009327 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 EMBL:BT003701 EMBL:AK117771 IPI:IPI00546282
RefSeq:NP_566210.1 UniGene:At.40956 ProteinModelPortal:Q9SS61
SMR:Q9SS61 PRIDE:Q9SS61 EnsemblPlants:AT3G03590.1 GeneID:821215
KEGG:ath:AT3G03590 TAIR:At3g03590 InParanoid:Q9SS61 OMA:REIFCDE
PhylomeDB:Q9SS61 ProtClustDB:CLSN2917083 Genevestigator:Q9SS61
Uniprot:Q9SS61
Length = 143
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 8 KTVIDNPKKLA----NLIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNK 63
K D+P K + + + L +F+G SR +W+YIK+++LQ+P +K
Sbjct: 48 KAKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADK 107
Query: 64 NVVNCDQKLRSILMGKSRVELAELPALIKLHFPK 97
+ CD+ L+ I GK +V E+ L+ HF K
Sbjct: 108 REIFCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141
>UNIPROTKB|G4MMD0 [details] [associations]
symbol:MGG_01988 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:CM001231 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 InterPro:IPR019835 SMART:SM00151 KO:K15223
RefSeq:XP_003708728.1 ProteinModelPortal:G4MMD0
EnsemblFungi:MGG_01988T0 GeneID:2681107 KEGG:mgr:MGG_01988
Uniprot:G4MMD0
Length = 285
Score = 127 (49.8 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 25 NLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVEL 84
+L ++L E G+ +SR ++W +IK NNLQDPN+K + CD+K++++ +S + +
Sbjct: 210 HLSASLAEVCGEPTLSRPQVVKKLWEHIKGNNLQDPNDKRQILCDEKMQAVFK-QSSLNM 268
Query: 85 AELPALIKLH-FPKD 98
+ LI H +P D
Sbjct: 269 FAMNKLIGSHLYPVD 283
>POMBASE|SPCC285.17 [details] [associations]
symbol:spp27 "RNA polymerase I upstream activation factor
complex subunit Spp27" species:4896 "Schizosaccharomyces pombe"
[GO:0000500 "RNA polymerase I upstream activating factor complex"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0001168 "RNA polymerase I upstream control
element sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR003121 InterPro:IPR009057
Pfam:PF02201 PomBase:SPCC285.17 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF47592 GO:GO:0045943 InterPro:IPR014876
Pfam:PF08766 GO:GO:0000500 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 HSSP:Q61466 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
PIR:T41263 RefSeq:NP_588345.1 ProteinModelPortal:O74503
STRING:O74503 PRIDE:O74503 EnsemblFungi:SPCC285.17.1 GeneID:2539310
KEGG:spo:SPCC285.17 NextBio:20800476 Uniprot:O74503
Length = 233
Score = 124 (48.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 24 VNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSI 75
+ L L EF+G ++SR ++W YIK ++LQDPN+K + CD KL+S+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172
>TAIR|locus:2010197 [details] [associations]
symbol:AT1G49520 "AT1G49520" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
EMBL:CP002684 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 EMBL:BT022048 IPI:IPI00546116
RefSeq:NP_175375.2 UniGene:At.49961 ProteinModelPortal:Q501B9
SMR:Q501B9 PRIDE:Q501B9 EnsemblPlants:AT1G49520.1 GeneID:841376
KEGG:ath:AT1G49520 TAIR:At1g49520 InParanoid:Q501B9 OMA:RTIICDE
PhylomeDB:Q501B9 ProtClustDB:CLSN2684550 Genevestigator:Q501B9
Uniprot:Q501B9
Length = 372
Score = 124 (48.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 12 DNPKKLAN-LIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQ 70
+ PKK + +L L+ F G +++R +W YIK NNLQDP++K + CD+
Sbjct: 242 EKPKKKGGGFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDE 301
Query: 71 KLRSI 75
LRS+
Sbjct: 302 SLRSL 306
Score = 112 (44.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 20/72 (27%), Positives = 42/72 (58%)
Query: 23 LVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRV 82
+ L L +F+G S+++R ++W+YI+ ++LQDP N+ + CD+ L S+ K+ +
Sbjct: 105 ICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRVKT-I 163
Query: 83 ELAELPALIKLH 94
+ ++ + H
Sbjct: 164 NMFQMNKALAKH 175
>TAIR|locus:2132055 [details] [associations]
symbol:AT4G22360 "AT4G22360" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
EMBL:CP002687 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 InterPro:IPR019835 SMART:SM00151
KO:K15223 UniGene:At.21353 UniGene:At.70102 EMBL:AY059797
EMBL:AY091266 IPI:IPI00522192 RefSeq:NP_567661.1
ProteinModelPortal:Q93YR5 SMR:Q93YR5 PRIDE:Q93YR5
EnsemblPlants:AT4G22360.1 GeneID:828331 KEGG:ath:AT4G22360
InParanoid:Q93YR5 OMA:IRDQINI ProtClustDB:CLSN2723299
Genevestigator:Q93YR5 Uniprot:Q93YR5
Length = 385
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 8 KTVIDNPKKLANLIDLVNLPSTLREF--VGQSRISRLGCFMRVWSYIKTNNLQDPNNKNV 65
KT P + V L L +F G++ ++ RVW YIK NNL+DP N
Sbjct: 293 KTETTEPISSTAISSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLEDPVNPMA 352
Query: 66 VNCDQKLRSILMGKSRVELAELPALIKLHFPK 97
+ CD+KLR +L G + + +++ H K
Sbjct: 353 IQCDEKLRDLL-GCESISAVGINEMLRRHMYK 383
Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 30 LREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA 89
L VG+ + R ++W+YI+ NNLQDP+NK + CD LR ++ ++ ++
Sbjct: 207 LEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDALR-VVFETDCTDMFKMNK 265
Query: 90 LIKLHF-PKDP 99
L+ H P DP
Sbjct: 266 LLAKHILPLDP 276
>TAIR|locus:2085894 [details] [associations]
symbol:AT3G19080 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
GO:GO:0009506 EMBL:CP002686 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 InterPro:IPR019835
SMART:SM00151 KO:K15223 IPI:IPI00544253 RefSeq:NP_188538.1
UniGene:At.53383 ProteinModelPortal:F4J9Z9 SMR:F4J9Z9 PRIDE:F4J9Z9
EnsemblPlants:AT3G19080.1 GeneID:821442 KEGG:ath:AT3G19080
OMA:PLEDNAG Uniprot:F4J9Z9
Length = 462
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 11 IDNPKKLAN--LIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNC 68
++ PK+ + +L L+ F G + ++R +W YIK NNLQDPN+K + C
Sbjct: 253 VEKPKRKGGGGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIIC 312
Query: 69 DQKLRSI 75
D+ RS+
Sbjct: 313 DESFRSL 319
Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 26 LPSTLREFVG--QSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVE 83
L L +F+G ++ +SR R+W YI N+LQDP++K V CD+KL+ + S E
Sbjct: 387 LSDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFEVDS-FE 445
Query: 84 LAELPALIKLHFPK 97
+ L+ HF K
Sbjct: 446 DTSVSKLLTNHFIK 459
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 15 KKLANLIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRS 74
K+ + + L L + VG S++ R ++W+YI+ +LQDP ++ + CD+ L S
Sbjct: 111 KRGGGITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDELLHS 170
Query: 75 ILMGKSRVELAEL-PALIKLHFP 96
+ K+ + + ++ AL K +P
Sbjct: 171 LFRVKT-INMFQMNKALTKHIWP 192
>SGD|S000004846 [details] [associations]
symbol:TRI1 "Non-essential sumoylated protein of unknown
function" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005730 "nucleolus" evidence=IEA;IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000004846
GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 EMBL:BK006946 EMBL:Z49939
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531
InterPro:IPR019835 SMART:SM00151 EMBL:AY557975 PIR:S57600
RefSeq:NP_013960.1 ProteinModelPortal:Q05024 SMR:Q05024
DIP:DIP-1551N IntAct:Q05024 MINT:MINT-386791 STRING:Q05024
PaxDb:Q05024 PeptideAtlas:Q05024 EnsemblFungi:YMR233W GeneID:855273
KEGG:sce:YMR233W CYGD:YMR233w GeneTree:ENSGT00390000006048
HOGENOM:HOG000000765 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
NextBio:978891 Genevestigator:Q05024 GermOnline:YMR233W
Uniprot:Q05024
Length = 226
Score = 112 (44.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 7 KKTVIDNPKKLANLIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVV 66
KK D+P + + V L + L++F+G + R +W YIK ++LQ+P ++ +
Sbjct: 107 KKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREI 166
Query: 67 NCDQKLRSILMGKSRVELAELPALIKLH 94
CD+K+ I GK ++ + + L+ H
Sbjct: 167 LCDEKMEPIF-GK-KMTMFSMNKLLTKH 192
>UNIPROTKB|F1NJN5 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0043393 "regulation of protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003139
"secondary heart field specification" evidence=IEA] [GO:0003219
"cardiac right ventricle formation" evidence=IEA] [GO:0003407
"neural retina development" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0000790 GO:GO:0071564 GO:GO:0071565 GO:GO:0006337
GO:GO:0030374 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
InterPro:IPR019835 SMART:SM00151 OMA:PLKSQMS EMBL:AADN02078761
EMBL:AADN02078762 EMBL:AADN02078763 EMBL:AADN02078764
EMBL:AADN02078765 EMBL:AADN02078766 IPI:IPI00583326
Ensembl:ENSGALT00000021298 Uniprot:F1NJN5
Length = 462
Score = 113 (44.8 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIKTN LQD ++K +NCD+ + I R++ +
Sbjct: 244 LDPRLARLLGIHTQTRSAIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIF-DCPRLKFS 302
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P DP
Sbjct: 303 EIPQRLTNLLLPPDP 317
>ZFIN|ZDB-GENE-080509-2 [details] [associations]
symbol:smarcd3b "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily d, member 3b"
species:7955 "Danio rerio" [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IGI] [GO:0055007 "cardiac muscle cell differentiation"
evidence=IGI] InterPro:IPR003121 Pfam:PF02201
ZFIN:ZDB-GENE-080509-2 GO:GO:0003007 GO:GO:0055007 GO:GO:0007368
SUPFAM:SSF47592 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 OrthoDB:EOG4QFWD6 OMA:PAISACY EMBL:BX005319
EMBL:BX322787 EMBL:EF552706 IPI:IPI00501254 RefSeq:NP_001120778.1
UniGene:Dr.28422 STRING:B2KL77 Ensembl:ENSDART00000006724
GeneID:562140 KEGG:dre:562140 CTD:562140 NextBio:20884266
Uniprot:B2KL77
Length = 476
Score = 112 (44.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W Y+KTN LQD ++K +NCD+ + I R++ +
Sbjct: 258 LDPRLARLLGIHTQTRSSIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIF-DCPRLKFS 316
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P DP
Sbjct: 317 EIPQRLTNLLLPPDP 331
>WB|WBGene00015971 [details] [associations]
symbol:swsn-2.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type
complex" evidence=ISS] [GO:0001085 "RNA polymerase II transcription
factor binding" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0040035 GO:GO:0001085
SUPFAM:SSF47592 EMBL:FO080611 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:TDKNIPD PIR:T15185
RefSeq:NP_491329.2 ProteinModelPortal:O02101 SMR:O02101
MINT:MINT-6668665 STRING:O02101 PaxDb:O02101
EnsemblMetazoa:C18E3.2.1 EnsemblMetazoa:C18E3.2.2
EnsemblMetazoa:C18E3.2.3 GeneID:172018 KEGG:cel:CELE_C18E3.2
UCSC:C18E3.2.2 CTD:172018 WormBase:C18E3.2 InParanoid:O02101
NextBio:873681 GO:GO:0070603 Uniprot:O02101
Length = 449
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 12 DNPKKLANLIDLVNLPST------LREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNV 65
D P K L+ L N P+ L + +G + +R +W YIKT+ LQDP +++
Sbjct: 210 DRPVKCRILLLLDNHPAKFKLHPRLAKVLGIATETRPKIIEALWQYIKTHGLQDPQERDI 269
Query: 66 VNCDQKLRSILMGKSRVELAELPALIKLH 94
+NCD L S G +R+ E+P KLH
Sbjct: 270 INCDTFL-SQCFGVNRMRFMEVPN--KLH 295
>ASPGD|ASPL0000017588 [details] [associations]
symbol:AN10524 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016586 "RSC
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 Pfam:PF02201
EMBL:BN001302 SUPFAM:SSF47592 EnsemblFungi:CADANIAT00004436
OMA:TDKNIPD Uniprot:C8V4A6
Length = 472
Score = 107 (42.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L E + +R G + +W YI+ LQ+ K +V CD +LR+I G+ ++
Sbjct: 250 LSKELAEVLDVEEETRSGIVLGIWDYIRAMGLQEDEEKRLVRCDDRLRAIF-GRDQMFFP 308
Query: 86 ELPALIKLHF-PKDP 99
++P I H P DP
Sbjct: 309 QIPESIGPHTSPLDP 323
>FB|FBgn0025463 [details] [associations]
symbol:Bap60 "Brahma associated protein 60kD" species:7227
"Drosophila melanogaster" [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0035060 "brahma complex" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] [GO:0001085 "RNA
polymerase II transcription factor binding" evidence=IPI]
[GO:0031453 "positive regulation of heterochromatin assembly"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0048666 "neuron
development" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] InterPro:IPR003121 Pfam:PF02201 GO:GO:0045893
GO:GO:0003677 GO:GO:0048813 GO:GO:0007517 GO:GO:0035060
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
EMBL:AF071503 ProteinModelPortal:O76490 SMR:O76490 IntAct:O76490
STRING:O76490 PaxDb:O76490 PRIDE:O76490 FlyBase:FBgn0025463
InParanoid:O76490 OrthoDB:EOG4HDR8S ArrayExpress:O76490 Bgee:O76490
GO:GO:0031453 Uniprot:O76490
Length = 515
Score = 105 (42.0 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIKT+ LQD + + +NCD+ L I + R++ A
Sbjct: 298 LDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQ-RMKFA 356
Query: 86 ELPALIK--LHFPKDP 99
E+P + LH P DP
Sbjct: 357 EIPQRLNPLLH-PPDP 371
>UNIPROTKB|Q17QK5 [details] [associations]
symbol:SMARCD3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043393 "regulation of protein binding" evidence=IEA]
[GO:0042692 "muscle cell differentiation" evidence=IEA] [GO:0035257
"nuclear hormone receptor binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 OMA:PLKSQMS
EMBL:DAAA02012020 EMBL:DAAA02012021 EMBL:DAAA02012022
EMBL:DAAA02012023 EMBL:DAAA02012024 EMBL:BC118305 IPI:IPI00788564
UniGene:Bt.53201 SMR:Q17QK5 STRING:Q17QK5
Ensembl:ENSBTAT00000028051 Uniprot:Q17QK5
Length = 470
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G SR +W Y+KTN LQD ++K +N D+ + I R++ +
Sbjct: 252 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFS 310
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P DP
Sbjct: 311 EIPQRLTALLLPPDP 325
>UNIPROTKB|Q6STE5 [details] [associations]
symbol:SMARCD3 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 3"
species:9606 "Homo sapiens" [GO:0003139 "secondary heart field
specification" evidence=IEA] [GO:0003219 "cardiac right ventricle
formation" evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0043393 "regulation of protein binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0016514
"SWI/SNF complex" evidence=IDA;NAS] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0005102 "receptor binding"
evidence=IPI] [GO:0035257 "nuclear hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0071565 "nBAF complex"
evidence=ISS] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP;NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IC;IDA] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=IMP] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003407 "neural retina development"
evidence=IEP] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IDA] Reactome:REACT_111217
InterPro:IPR003121 Pfam:PF02201 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0005654 GO:GO:0044281 GO:GO:0043393
GO:GO:0044255 GO:GO:0006357 GO:GO:0006351 EMBL:CH471173
EMBL:AC021097 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219 EMBL:AC005486
eggNOG:COG5531 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 EMBL:U66619 EMBL:AY450430 EMBL:AY450431
EMBL:BC002628 EMBL:BC110350 IPI:IPI00106988 IPI:IPI00456146
RefSeq:NP_001003801.1 RefSeq:NP_001003802.1 RefSeq:NP_003069.2
UniGene:Hs.647067 ProteinModelPortal:Q6STE5 SMR:Q6STE5
DIP:DIP-33012N IntAct:Q6STE5 STRING:Q6STE5 PhosphoSite:Q6STE5
DMDM:57013057 PaxDb:Q6STE5 PRIDE:Q6STE5 DNASU:6604
Ensembl:ENST00000262188 Ensembl:ENST00000356800
Ensembl:ENST00000392811 GeneID:6604 KEGG:hsa:6604 UCSC:uc003wjs.3
UCSC:uc003wjt.3 CTD:6604 GeneCards:GC07M150935 HGNC:HGNC:11108
MIM:601737 neXtProt:NX_Q6STE5 PharmGKB:PA35958 InParanoid:Q6STE5
OMA:PLKSQMS OrthoDB:EOG4QFWD6 ChiTaRS:SMARCD3 GenomeRNAi:6604
NextBio:25695 ArrayExpress:Q6STE5 Bgee:Q6STE5 CleanEx:HS_SMARCD3
Genevestigator:Q6STE5 GermOnline:ENSG00000082014 Uniprot:Q6STE5
Length = 483
Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G SR +W Y+KTN LQD ++K +N D+ + I R++ +
Sbjct: 265 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFS 323
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P DP
Sbjct: 324 EIPQRLTALLLPPDP 338
>MGI|MGI:1914243 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=ISO] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0003139 "secondary heart field specification"
evidence=IMP] [GO:0003219 "cardiac right ventricle formation"
evidence=IMP] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=ISO] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
[GO:0035257 "nuclear hormone receptor binding" evidence=ISO]
[GO:0042692 "muscle cell differentiation" evidence=IMP] [GO:0043393
"regulation of protein binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0071564 "npBAF complex" evidence=ISO;IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1914243 GO:GO:0005737 GO:GO:0045893 GO:GO:0043393
GO:GO:0006351 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0071564 GO:GO:0003407 GO:GO:0071565 GO:GO:0006337
GO:GO:0002052 GO:GO:0030374 GO:GO:0003139 SUPFAM:SSF47592
GO:GO:0003219 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 CTD:6604 OMA:PLKSQMS OrthoDB:EOG4QFWD6
EMBL:AK005094 EMBL:AK019374 EMBL:BC013122 EMBL:BC060525
IPI:IPI00467181 RefSeq:NP_080167.3 UniGene:Mm.436539
ProteinModelPortal:Q6P9Z1 SMR:Q6P9Z1 DIP:DIP-48886N STRING:Q6P9Z1
PhosphoSite:Q6P9Z1 PaxDb:Q6P9Z1 PRIDE:Q6P9Z1
Ensembl:ENSMUST00000030791 GeneID:66993 KEGG:mmu:66993
UCSC:uc008wsd.1 InParanoid:Q6P9Z1 NextBio:323242 Bgee:Q6P9Z1
Genevestigator:Q6P9Z1 GermOnline:ENSMUSG00000028949 Uniprot:Q6P9Z1
Length = 483
Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G SR +W Y+KTN LQD ++K +N D+ + I R++ +
Sbjct: 265 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFS 323
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P DP
Sbjct: 324 EIPQRLTALLLPPDP 338
>UNIPROTKB|F1SSN0 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043393 "regulation
of protein binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:PLKSQMS EMBL:FP102583 Ensembl:ENSSSCT00000017896 Uniprot:F1SSN0
Length = 486
Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G SR +W Y+KTN LQD ++K +N D+ + I R++ +
Sbjct: 268 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFS 326
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P DP
Sbjct: 327 EIPQRLTALLLPPDP 341
>RGD|1311869 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=ISO] [GO:0003139 "secondary heart field specification"
evidence=IEA;ISO] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA;ISO] [GO:0003407 "neural retina development"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005102 "receptor binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=IEA;ISO] [GO:0006338 "chromatin
remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IEA;ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA;ISO] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity"
evidence=IEA;ISO] [GO:0035257 "nuclear hormone receptor binding"
evidence=IEA;ISO] [GO:0042692 "muscle cell differentiation"
evidence=IEA;ISO] [GO:0043393 "regulation of protein binding"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0071564 "npBAF
complex" evidence=IEA;ISO] [GO:0071565 "nBAF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:1311869
EMBL:CH474020 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 CTD:6604
OrthoDB:EOG4QFWD6 EMBL:BC085349 IPI:IPI00951770
RefSeq:NP_001011966.1 UniGene:Rn.20043 SMR:Q5U3Y2 STRING:Q5U3Y2
Ensembl:ENSRNOT00000066598 GeneID:296732 KEGG:rno:296732
InParanoid:Q5U3Y2 NextBio:641725 Genevestigator:Q5U3Y2
Uniprot:Q5U3Y2
Length = 470
Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G SR +W Y+KTN LQD ++K +N D+ + I R++ +
Sbjct: 252 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFS 310
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P DP
Sbjct: 311 EIPQRLTGLLLPPDP 325
>UNIPROTKB|F1MTG9 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=IEA]
[GO:0032947 "protein complex scaffold" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
IPI:IPI00723099 UniGene:Bt.87407 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:DAAA02012932 Ensembl:ENSBTAT00000001284
Uniprot:F1MTG9
Length = 515
Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIKT+ LQDP+ + V CD+ L+ I + R++ +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFS 355
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P +P
Sbjct: 356 EIPQRLHALLMPPEP 370
>UNIPROTKB|Q2TBN1 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0007399 GO:GO:0016568 GO:GO:0071564 GO:GO:0071565
SUPFAM:SSF47592 eggNOG:COG5531 EMBL:BC109890 IPI:IPI00723099
RefSeq:NP_001033648.1 UniGene:Bt.87407 ProteinModelPortal:Q2TBN1
SMR:Q2TBN1 STRING:Q2TBN1 PRIDE:Q2TBN1 GeneID:533232 KEGG:bta:533232
CTD:6602 HOGENOM:HOG000240746 InParanoid:Q2TBN1 KO:K11650
OrthoDB:EOG4DNF48 NextBio:20875968 InterPro:IPR019835 SMART:SM00151
Uniprot:Q2TBN1
Length = 515
Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIKT+ LQDP+ + V CD+ L+ I + R++ +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFS 355
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P +P
Sbjct: 356 EIPQRLHALLMPPEP 370
>UNIPROTKB|Q96GM5 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0007399 "nervous system
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032947 "protein complex scaffold" evidence=IDA]
[GO:0048096 "chromatin-mediated maintenance of transcription"
evidence=IMP] [GO:0006338 "chromatin remodeling" evidence=IDA;IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF
complex" evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0006337 "nucleosome disassembly"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0007399
GO:GO:0006357 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0032947 EMBL:AC025154 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 EMBL:AF109733 EMBL:U66617 EMBL:BC009368
IPI:IPI00852816 IPI:IPI00853408 RefSeq:NP_003067.3
RefSeq:NP_620710.2 UniGene:Hs.79335 ProteinModelPortal:Q96GM5
SMR:Q96GM5 DIP:DIP-33390N IntAct:Q96GM5 MINT:MINT-1144212
STRING:Q96GM5 PhosphoSite:Q96GM5 DMDM:238054318 PaxDb:Q96GM5
PRIDE:Q96GM5 DNASU:6602 Ensembl:ENST00000381513
Ensembl:ENST00000394963 GeneID:6602 KEGG:hsa:6602 UCSC:uc001rvx.4
UCSC:uc001rvy.4 GeneCards:GC12P050478 HGNC:HGNC:11106 HPA:HPA004101
MIM:601735 neXtProt:NX_Q96GM5 PharmGKB:PA35956 HOVERGEN:HBG054046
InParanoid:Q96GM5 OMA:NTFYPSK ChiTaRS:SMARCD1 GenomeRNAi:6602
NextBio:25683 ArrayExpress:Q96GM5 Bgee:Q96GM5 CleanEx:HS_SMARCD1
Genevestigator:Q96GM5 Uniprot:Q96GM5
Length = 515
Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIKT+ LQDP+ + V CD+ L+ I + R++ +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFS 355
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P +P
Sbjct: 356 EIPQRLHALLMPPEP 370
>MGI|MGI:1933623 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0032947
"protein complex scaffold" evidence=ISO] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1933623 GO:GO:0007399 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0048096 GO:GO:0006337 SUPFAM:SSF47592
eggNOG:COG5531 GeneTree:ENSGT00390000017809 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 HOVERGEN:HBG054046 OMA:NTFYPSK ChiTaRS:SMARCD1
EMBL:M25773 EMBL:U66620 EMBL:BC026783 EMBL:BC059921 EMBL:AK075611
IPI:IPI00121270 IPI:IPI00223126 PIR:A30222 RefSeq:NP_114030.2
UniGene:Mm.273756 PDB:1UHR PDBsum:1UHR ProteinModelPortal:Q61466
SMR:Q61466 IntAct:Q61466 STRING:Q61466 PhosphoSite:Q61466
PaxDb:Q61466 PRIDE:Q61466 Ensembl:ENSMUST00000023759 GeneID:83797
KEGG:mmu:83797 UCSC:uc007xqb.1 InParanoid:Q61466
EvolutionaryTrace:Q61466 NextBio:350782 Bgee:Q61466
Genevestigator:Q61466 GermOnline:ENSMUSG00000023018 Uniprot:Q61466
Length = 515
Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIKT+ LQDP+ + V CD+ L+ I + R++ +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ-RMKFS 355
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P +P
Sbjct: 356 EIPQRLHALLMPPEP 370
>RGD|1305406 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] [GO:0032947 "protein complex scaffold"
evidence=IEA;ISO] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=IEA;ISO] [GO:0071564 "npBAF complex"
evidence=IEA;ISO] [GO:0071565 "nBAF complex" evidence=IEA;ISO]
InterPro:IPR003121 Pfam:PF02201 RGD:1305406 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
EMBL:CH474035 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809 CTD:6602
KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835 SMART:SM00151
IPI:IPI00366479 RefSeq:NP_001102222.1 UniGene:Rn.21196
Ensembl:ENSRNOT00000043163 GeneID:363002 KEGG:rno:363002
UCSC:RGD:1305406 NextBio:682087 Uniprot:D3ZBS9
Length = 515
Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIKT+ LQDP+ + V CD+ L+ I + R++ +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFS 355
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P +P
Sbjct: 356 EIPQRLHALLMPPEP 370
>UNIPROTKB|H9KZE0 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0032947 "protein
complex scaffold" evidence=IEA] [GO:0048096 "chromatin-mediated
maintenance of transcription" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:AADN02072424 Ensembl:ENSGALT00000010024
Uniprot:H9KZE0
Length = 516
Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIKT+ LQDP+ + V CD+ L+ I + R++ +
Sbjct: 298 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQ-RMKFS 356
Query: 86 ELPA-LIKLHFPKDP 99
E+P L L P +P
Sbjct: 357 EIPQRLHALLMPPEP 371
>FB|FBgn0035370 [details] [associations]
symbol:CG1240 species:7227 "Drosophila melanogaster"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 EMBL:AE014296
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 KO:K15223 OMA:FRTFGML GeneTree:ENSGT00520000059577
EMBL:AY061488 RefSeq:NP_647745.1 UniGene:Dm.3583 SMR:Q9VZY0
MINT:MINT-927607 STRING:Q9VZY0 EnsemblMetazoa:FBtr0072969
GeneID:38341 KEGG:dme:Dmel_CG1240 UCSC:CG1240-RA
FlyBase:FBgn0035370 eggNOG:NOG264204 InParanoid:Q9VZY0
OrthoDB:EOG4M907W ChiTaRS:CG1240 GenomeRNAi:38341 NextBio:808111
Uniprot:Q9VZY0
Length = 244
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 25 NLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSIL 76
NL L +G+S + R +VW+ IK +L DP NK CD +L ++
Sbjct: 173 NLSPELSALMGESSLPRHEVVKKVWAIIKERDLYDPKNKQFAICDDELMKVM 224
>ASPGD|ASPL0000053508 [details] [associations]
symbol:AN0360 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003121
InterPro:IPR009057 Pfam:PF02201 EMBL:BN001308 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:AACD01000006 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 OrthoDB:EOG486CP2 RefSeq:XP_657964.1
ProteinModelPortal:Q5BGH0 EnsemblFungi:CADANIAT00002344
GeneID:2876138 KEGG:ani:AN0360.2 HOGENOM:HOG000213060 OMA:FRTFGML
Uniprot:Q5BGH0
Length = 279
Score = 91 (37.1 bits), Expect = 0.00078, P = 0.00078
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 24 VNLPSTLREFVG-QSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRV 82
+NL L +G + +SR ++W YI ++LQDP+++ + CD +R++ + R+
Sbjct: 203 LNLSPALSALLGGAATLSRPQTVKKLWEYIHEHDLQDPSDRRQIRCDDPMRAVFK-QDRI 261
Query: 83 ELAELPALIK--LHFPKD 98
+ + ++ L+ P +
Sbjct: 262 HMFTMTKILSQNLYSPDE 279
>WB|WBGene00020779 [details] [associations]
symbol:T24G10.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0005634 GO:GO:0009792
GO:GO:0006351 GO:GO:0008134 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
KO:K15223 EMBL:FO081422 PIR:T16937 RefSeq:NP_498159.2
ProteinModelPortal:Q22749 SMR:Q22749 STRING:Q22749 PaxDb:Q22749
EnsemblMetazoa:T24G10.2 GeneID:175747 KEGG:cel:CELE_T24G10.2
UCSC:T24G10.2 CTD:175747 WormBase:T24G10.2
GeneTree:ENSGT00520000059577 HOGENOM:HOG000017704 InParanoid:Q22749
OMA:TKLCYIS NextBio:889470 Uniprot:Q22749
Length = 347
Score = 92 (37.4 bits), Expect = 0.00088, P = 0.00087
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 23 LVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRV 82
L + + L++ + R +W YIK NNL+DP N + CD L SI K+R+
Sbjct: 199 LCYISTELQQVTKDQWMKRCDVVKALWDYIKENNLKDPKNGQYIICDSTLESIFK-KNRL 257
Query: 83 E 83
+
Sbjct: 258 K 258
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 100 100 0.00091 102 3 11 22 0.39 30
29 0.47 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 546 (58 KB)
Total size of DFA: 111 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.13u 0.13s 11.26t Elapsed: 00:00:00
Total cpu time: 11.13u 0.13s 11.26t Elapsed: 00:00:00
Start: Fri May 10 18:11:31 2013 End: Fri May 10 18:11:31 2013