BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034230
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UHR|A Chain A, Solution Structure Of The Swib Domain Of Mouse Brg1-
          Associated Factor 60a
          Length = 93

 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 48 VWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA-LIKLHFPKDP 99
          +W YIKT+ LQDP+ +  V CD+ L+ I   + R++ +E+P  L  L  P +P
Sbjct: 36 LWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ-RMKFSEIPQRLHALLMPPEP 87


>pdb|1V31|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
          Hypothetical Protein At5g14170 From Arabidopsis
          Thaliana
          Length = 93

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
          L + L + +G    +R      +W Y+K   LQ+PN+ +  NCD  L+ +  G+ +++  
Sbjct: 14 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 72

Query: 86 ELPALIKLH 94
           +   I  H
Sbjct: 73 MVSQKISHH 81


>pdb|1V32|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
          Hypothetical Protein At5g08430 From Arabidopsis
          Thaliana
          Length = 101

 Score = 30.0 bits (66), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 39 ISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPALIKLHFPKD 98
          ISR      +  YI    L DP+NK  V CD++L  +L G   +   ++  L++ H+ ++
Sbjct: 35 ISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRL-VLLFGTRTIFRMKVYDLLEKHYKEN 93


>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
           Phosphatase Like Phytase From Mitsuokella Multacida
 pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
           Phosphatase Like Phytase From Mitsuokella Multacida
          Length = 629

 Score = 25.4 bits (54), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 15  KKLANLIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTN-NLQDPNN----KNVVN 67
           +KL  ++DL  +P   + +  ++ I R       + Y+K N +L+ P +    KN VN
Sbjct: 271 QKLIGIVDLSEIPDKKKNYGRKAYIERYQFVQHFYDYVKENPDLKTPYSVWAKKNKVN 328


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,890,967
Number of Sequences: 62578
Number of extensions: 96271
Number of successful extensions: 203
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 8
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)