BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034230
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 24 VNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVE 83
V L +L +G+ ++R R+W+YIK +NLQ+PNNK + CD+KL +++GKS
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGKS-TN 181
Query: 84 LAELPALIKLHFPKDPK 100
+ E+ ++ H +PK
Sbjct: 182 MFEMHKILASHMT-EPK 197
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 24 VNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSIL 76
+ L L EF+G ++SR ++W YIK ++LQDPN+K + CD KL+S+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 12 DNPKKLANLIDLVNLPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQK 71
D+P + + V L + L++F+G + R +W YIK ++LQ+P ++ + CD+K
Sbjct: 112 DSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEK 171
Query: 72 LRSILMGK 79
+ I K
Sbjct: 172 MEPIFGKK 179
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
PE=2 SV=1
Length = 515
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 48 VWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA-LIKLHFPKDP 99
+W YIKT+ LQDP+ + V CD+ L+ I + R++ +E+P L L P +P
Sbjct: 319 LWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIPQRLHALLMPPEP 370
>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Mus musculus
GN=Smarcd3 PE=1 SV=2
Length = 483
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 30 LREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA 89
L +G SR +W Y+KTN LQD ++K +N D+ + I R++ +E+P
Sbjct: 269 LARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFSEIPQ 327
Query: 90 -LIKLHFPKDP 99
L L P DP
Sbjct: 328 RLTALLLPPDP 338
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Homo sapiens
GN=SMARCD3 PE=1 SV=1
Length = 483
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 30 LREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA 89
L +G SR +W Y+KTN LQD ++K +N D+ + I R++ +E+P
Sbjct: 269 LARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFSEIPQ 327
Query: 90 -LIKLHFPKDP 99
L L P DP
Sbjct: 328 RLTALLLPPDP 338
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Homo sapiens
GN=SMARCD1 PE=1 SV=2
Length = 515
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 48 VWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA-LIKLHFPKDP 99
+W YIKT+ LQDP+ + V CD+ L+ I + R++ +E+P L L P +P
Sbjct: 319 LWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIPQRLHALLMPPEP 370
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Mus musculus
GN=Smarcd1 PE=1 SV=3
Length = 515
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 48 VWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPA-LIKLHFPKDP 99
+W YIKT+ LQDP+ + V CD+ L+ I + R++ +E+P L L P +P
Sbjct: 319 LWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ-RMKFSEIPQRLHALLMPPEP 370
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis
thaliana GN=NERD PE=1 SV=3
Length = 1773
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 50 SYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPALIKLHFPK 97
+YIK NL+DP K+ V CD +L++ L GKS V E+ L+ HF K
Sbjct: 838 AYIKRYNLRDPRRKSQVICDSRLQN-LFGKSHVGHFEMLNLLDSHFLK 884
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
GN=At5g14170 PE=1 SV=1
Length = 534
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L + L + +G +R +W Y+K LQ+PN+ + NCD L+ + G+ +++
Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 379
Query: 86 ELPALIKLHFPKDP 99
+ I H P
Sbjct: 380 MVSQKISHHLSPPP 393
>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
Length = 425
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 48 VWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPALI-KLHFPKDP 99
+W YIK + LQD K ++NCD+ LR L R+ +P L+ + P DP
Sbjct: 230 LWQYIKFHRLQDMEEKRLINCDKALRD-LFEADRLYFPRIPELMNRFLEPIDP 281
>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Homo sapiens
GN=SMARCD2 PE=1 SV=3
Length = 531
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIK N LQD + + +NC++ R I R+ +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF-SCGRLRFS 371
Query: 86 ELP 88
E+P
Sbjct: 372 EIP 374
>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Rattus norvegicus
GN=Smarcd2 PE=2 SV=3
Length = 531
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIK N LQD + + +NC++ R I R+ +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF-SCGRLRFS 371
Query: 86 ELP 88
E+P
Sbjct: 372 EIP 374
>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Mus musculus
GN=Smarcd2 PE=2 SV=2
Length = 531
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIK N LQD + + +NC++ R I R+ +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF-SCGRLRFS 371
Query: 86 ELP 88
E+P
Sbjct: 372 EIP 374
>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2
PE=3 SV=1
Length = 531
Score = 36.2 bits (82), Expect = 0.070, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 26 LPSTLREFVGQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELA 85
L L +G +R +W YIK N LQD + + +NC++ R I R+ +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF-SCGRLRFS 371
Query: 86 ELP 88
E+P
Sbjct: 372 EIP 374
>sp|Q556Z0|SNF12_DICDI SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum
GN=snf12-1 PE=3 SV=1
Length = 456
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 46 MRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPALIKLHF-PKDP 99
+ +W YIK+N L D K + CD+ L++I ++ ++P L++ H P DP
Sbjct: 261 LALWHYIKSNTLLDAETKKIT-CDENLKNIF-SLEELQFNQIPQLLREHLSPPDP 313
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 51 YIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPALIKLH 94
YIK NL+DP K+ V CDQ L L GK RV E+ L++ H
Sbjct: 351 YIKKKNLRDPLQKSQVLCDQMLVK-LFGKQRVGHFEMLKLLESH 393
>sp|Q196Z0|VF306_IIV3 Putative SWIB domain-containing protein 070L OS=Invertebrate
iridescent virus 3 GN=IIV3-070L PE=3 SV=1
Length = 282
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 35 GQSRISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILM 77
G++ SR + +YIK N+L+D +NK ++ D KL+ +L
Sbjct: 117 GKTEKSRYDVTKYLCAYIKDNDLRDASNKTIILPDAKLKKLLQ 159
>sp|Q9R1S3|PIGN_MOUSE GPI ethanolamine phosphate transferase 1 OS=Mus musculus GN=Pign
PE=2 SV=2
Length = 931
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 42 LGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSI 75
L C M VW ++ LQ P V+C QKL SI
Sbjct: 736 LSCLMFVWIQVEQETLQQPG----VSCKQKLTSI 765
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
GN=At5g08430 PE=1 SV=2
Length = 553
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 39 ISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLRSILMGKSRVELAELPALIKLHF 95
ISR + YI L DP+NK V CD++L +L G + ++ L++ H+
Sbjct: 52 ISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRL-VLLFGTRTIFRMKVYDLLEKHY 107
>sp|B9L8V5|PUR7_NAUPA Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM
18972 / AmH) GN=purC PE=3 SV=1
Length = 235
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 11 IDNPKKLANLIDLVNLPSTLREFVGQSRISRLGC-------FMRVWSYIKTNNLQDPNNK 63
ID K+L +D++ + +R V S RLG F V Y K ++L DP
Sbjct: 71 IDETKQLVKKVDIILIEVVVRNIVAGSLAKRLGLKEGTKLPFTIVEFYYKNDDLNDP--- 127
Query: 64 NVVNCDQKLRSILMGKSRVEL 84
++N D + L+ K+R EL
Sbjct: 128 -LINDDHAMVLELV-KTRKEL 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,111,413
Number of Sequences: 539616
Number of extensions: 1299678
Number of successful extensions: 3178
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3160
Number of HSP's gapped (non-prelim): 24
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)