BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034231
MLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISA
VTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS

High Scoring Gene Products

Symbol, full name Information P value
AT5G40500 protein from Arabidopsis thaliana 4.2e-31

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034231
        (100 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168723 - symbol:AT5G40500 "AT5G40500" species...   342  4.2e-31   1


>TAIR|locus:2168723 [details] [associations]
            symbol:AT5G40500 "AT5G40500" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006661 "phosphatidylinositol biosynthetic
            process" evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AY065309 EMBL:AY117310 IPI:IPI00529647 RefSeq:NP_198866.2
            UniGene:At.28461 STRING:Q8VZ30 EnsemblPlants:AT5G40500.1
            GeneID:834048 KEGG:ath:AT5G40500 TAIR:At5g40500
            HOGENOM:HOG000012836 InParanoid:Q8VZ30 OMA:AVTHRYQ PhylomeDB:Q8VZ30
            ProtClustDB:CLSN2690216 ArrayExpress:Q8VZ30 Genevestigator:Q8VZ30
            Uniprot:Q8VZ30
        Length = 123

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 64/85 (75%), Positives = 74/85 (87%)

Query:     2 LKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAV 61
             L++ CRKKE+ RD  +  +PYKV+EITPPPK LGIRC P NLQCGE+V IEGQ YTISAV
Sbjct:    27 LQINCRKKEKGRDQSH--YPYKVIEITPPPKSLGIRCLPHNLQCGENVMIEGQTYTISAV 84

Query:    62 THRYQLRKGKYEPSEKRLDVLSSSR 86
             THRYQLRKGKYEPSE+RLDVLS++R
Sbjct:    85 THRYQLRKGKYEPSERRLDVLSAAR 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100        88   0.00091  102 3  11 22  0.48    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  110 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.20u 0.15s 11.35t   Elapsed:  00:00:00
  Total cpu time:  11.20u 0.15s 11.35t   Elapsed:  00:00:00
  Start:  Fri May 10 18:14:27 2013   End:  Fri May 10 18:14:27 2013

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