BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034231
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W3Z|A Chain A, Structure Of A Streptococcus Mutans Ce4 Esterase
          Length = 311

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 4   VVCRKKERDRDHKNNIHPYKVV--EITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAV 61
           V+ + K   + HKN+I   ++   + TP P        P  L+ G +   + + Y  SA 
Sbjct: 37  VLVQAKSMQKQHKNHIRSSRISKKKTTPKPN-----INPNALKIGSNHNNQAEGYAYSAE 91

Query: 62  THRYQLRKGKYEPSEKRLDVLS 83
           T R Q+   K   ++++L  L+
Sbjct: 92  TVR-QMMNNKQASAKQKLVFLT 112


>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
           Arthrobacter Nicotinovorans
 pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
           Oxidase From Arthrobacter Nicotinovorans
 pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
           With Substrate Bound At Active Site And Inhibitor At
           Exit Cavity
 pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
           Methylmyosmine Product Formed During Catalytic Turnover
 pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
           Product Formed During Catalytic Turnover
 pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
           At Active Site
 pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
           Bound At Active Site And Turnover Product At Exit Cavity
 pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
 pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
 pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
           6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
           Nicotinovorans
 pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
          Length = 431

 Score = 25.4 bits (54), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 47  ESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDV 81
           E+V +E   YT+    HR  L KG      + LD+
Sbjct: 107 EAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDI 141


>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
           Oxidase, Crystal Form P3121
 pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
           Oxidase, Crystal Form P3121
          Length = 425

 Score = 25.4 bits (54), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 47  ESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDV 81
           E+V +E   YT+    HR  L KG      + LD+
Sbjct: 107 EAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDI 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,681,315
Number of Sequences: 62578
Number of extensions: 93624
Number of successful extensions: 155
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)