Query 034231
Match_columns 100
No_of_seqs 52 out of 54
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 19:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pp6_A Gifsy-2 prophage ATP-bi 88.6 1.1 3.8E-05 31.1 5.7 51 20-74 41-91 (102)
2 2f9h_A PTS system, IIA compone 80.6 1.7 5.9E-05 30.6 3.8 21 41-61 53-73 (129)
3 1k0h_A Gpfii; twisted beta-san 67.8 1.8 6.1E-05 29.7 1.1 20 42-61 74-93 (117)
4 3lae_A UPF0053 protein HI0107; 66.5 6.1 0.00021 24.4 3.3 25 39-63 46-70 (81)
5 2pls_A CBS domain protein; APC 65.3 5.7 0.0002 24.7 3.0 26 38-63 49-74 (86)
6 2p4p_A Hypothetical protein HD 63.0 6.8 0.00023 24.4 3.1 26 38-63 47-72 (86)
7 3llb_A Uncharacterized protein 61.6 10 0.00035 23.5 3.7 26 39-64 46-71 (83)
8 2o3g_A Putative protein; APC85 60.3 7.9 0.00027 24.4 3.0 25 39-63 56-80 (92)
9 2pli_A Uncharacterized protein 60.2 7.4 0.00025 24.6 2.9 25 39-63 55-79 (91)
10 2oai_A Hemolysin; PFAM03471, x 59.5 8.1 0.00028 24.6 3.0 26 38-63 57-82 (94)
11 2nqw_A CBS domain protein; PFA 59.4 12 0.0004 23.6 3.8 25 38-62 56-80 (93)
12 3a5z_B EF-P, elongation factor 54.7 19 0.00064 26.5 4.7 26 41-66 10-35 (191)
13 3ded_A Probable hemolysin; str 52.7 16 0.00054 24.3 3.7 24 40-63 78-101 (113)
14 1uuz_A IVY, inhibitor of verte 50.3 14 0.00048 26.4 3.3 22 42-63 39-60 (137)
15 2p13_A CBS domain; alpha-beta 50.2 7.6 0.00026 24.4 1.7 25 39-63 54-78 (90)
16 3cdd_A Prophage MUSO2, 43 kDa 49.1 42 0.0014 25.3 6.0 43 42-89 298-346 (361)
17 2eif_A IF-5A, protein (eukaryo 48.0 23 0.0008 24.4 4.1 23 42-64 15-37 (136)
18 1bkb_A Translation initiation 47.9 26 0.00088 24.1 4.3 24 42-65 13-36 (136)
19 2r2z_A Hemolysin; APC85144, en 47.3 11 0.00038 23.6 2.2 26 38-63 52-79 (93)
20 2p5z_X Type VI secretion syste 47.2 19 0.00064 28.5 3.9 32 41-73 320-359 (491)
21 1iz6_A Initiation factor 5A; S 45.3 27 0.00093 24.1 4.1 24 42-65 11-34 (138)
22 3cpf_A Eukaryotic translation 42.7 31 0.001 23.8 4.0 23 42-64 11-33 (138)
23 1xs0_A Inhibitor of vertebrate 41.7 13 0.00046 26.5 2.0 21 43-63 38-58 (136)
24 2rk5_A Putative hemolysin; str 40.6 18 0.00062 22.4 2.3 25 38-62 44-74 (87)
25 3lvl_A NIFU-like protein; prot 39.8 15 0.00053 25.0 2.1 11 41-51 34-44 (129)
26 3oyy_A EF-P, elongation factor 38.3 36 0.0012 25.0 4.0 25 42-66 9-33 (191)
27 3tre_A EF-P, elongation factor 38.3 36 0.0012 24.9 4.0 23 42-64 11-33 (191)
28 1ueb_A EF-P, TT0860, elongatio 35.5 43 0.0015 24.3 4.0 24 43-66 7-30 (184)
29 3er0_A Eukaryotic translation 34.3 51 0.0017 23.8 4.2 29 40-71 33-61 (167)
30 3d37_A Tail protein, 43 kDa; s 33.3 91 0.0031 24.0 5.7 44 42-89 294-343 (381)
31 1yby_A Translation elongation 30.1 64 0.0022 24.1 4.3 26 40-65 34-59 (215)
32 1x6o_A Eukaryotic initiation f 28.8 67 0.0023 23.3 4.1 24 41-64 34-57 (174)
33 3hks_A EIF-5A-2, eukaryotic tr 28.5 76 0.0026 22.9 4.3 28 41-71 32-59 (167)
34 1te7_A Hypothetical UPF0267 pr 27.0 67 0.0023 20.7 3.5 23 40-62 30-56 (103)
35 3tiw_A Transitional endoplasmi 26.1 48 0.0016 24.0 2.9 38 18-55 20-63 (187)
36 3udc_A Small-conductance mecha 25.9 53 0.0018 24.4 3.1 28 39-66 125-152 (285)
37 3q3y_A HEVB EV93 3C protease; 25.6 97 0.0033 23.0 4.5 31 37-70 37-67 (191)
38 1wru_A 43 kDa tail protein; ba 24.0 1.7E+02 0.0057 22.3 5.7 42 42-87 291-339 (379)
39 2vv5_A MSCS, small-conductance 22.1 57 0.002 24.3 2.7 29 38-66 125-153 (286)
40 2wkd_A ORF34P2; SSB, single-st 21.9 62 0.0021 22.8 2.6 22 33-54 44-65 (119)
41 3qwz_A Transitional endoplasmi 21.3 67 0.0023 23.7 2.9 39 17-55 22-66 (211)
42 1ed7_A Chitinase A1, (CHBD-CHI 20.6 33 0.0011 19.4 0.8 21 44-64 9-29 (45)
43 3i38_A Putative chaperone DNAJ 20.3 76 0.0026 20.7 2.7 21 36-56 41-61 (109)
No 1
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=88.57 E-value=1.1 Score=31.06 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=35.0
Q ss_pred cceEEEEeCCCCceeeeEEcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecceEEe
Q 034231 20 HPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEP 74 (100)
Q Consensus 20 lp~EV~~~t~p~r~LG~~~Lp~~pqpG~~le~eg~sY~Vl~rrHrYqLr~GrY~l 74 (100)
.|-|.--++++.++|=.+.=.--|+-|+-|..+|+.|+|. ||++..|+.++
T Consensus 41 ~~~emg~lsG~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vt----r~~~~ngk~~i 91 (102)
T 2pp6_A 41 FLAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVT----RIRRFNGKPQL 91 (102)
T ss_dssp GTC--------CEEEEECCSSCCCCTTCEEEETTEEEEEE----EEEEETTEEEE
T ss_pred hHHHhCCccCCceEEEEecCCcccCCCCEEEEcCcEEEEE----EEEEECCcEEE
Confidence 4445555688888887774445599999999999999995 68888999875
No 2
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=80.62 E-value=1.7 Score=30.58 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.5
Q ss_pred CCCCCCCeEEEcCeEEEEEEE
Q 034231 41 PNLQCGESVTIEGQAYTISAV 61 (100)
Q Consensus 41 ~~pqpG~~le~eg~sY~Vl~r 61 (100)
..+++|+++.++++.|.|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 689999999999999999876
No 3
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=67.82 E-value=1.8 Score=29.69 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=17.4
Q ss_pred CCCCCCeEEEcCeEEEEEEE
Q 034231 42 NLQCGESVTIEGQAYTISAV 61 (100)
Q Consensus 42 ~pqpG~~le~eg~sY~Vl~r 61 (100)
.|++|+.|+++|++|.|..+
T Consensus 74 ~~~~gD~v~i~g~~y~V~~v 93 (117)
T 1k0h_A 74 QLRRGDTLTIGEENFWVDRV 93 (117)
T ss_dssp TCCSSCEEEETTTCEEBCCC
T ss_pred CCCCCCEEEECCeEEEEeee
Confidence 36899999999999999764
No 4
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=66.47 E-value=6.1 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.6
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEE
Q 034231 39 FPPNLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 39 Lp~~pqpG~~le~eg~sY~Vl~rrH 63 (100)
|..-|..|+.++++|-.|.|.+...
T Consensus 46 lg~iP~~Gd~v~~~~~~f~V~~~~~ 70 (81)
T 3lae_A 46 LEEIPDEGTICEIDGLLITILEVGD 70 (81)
T ss_dssp CSSCCCTTCEEEETTEEEEEEEEET
T ss_pred hCCCCCCCCEEEECCEEEEEEEeeC
Confidence 4567999999999999999998754
No 5
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=65.28 E-value=5.7 Score=24.69 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=22.2
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 034231 38 CFPPNLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 38 ~Lp~~pqpG~~le~eg~sY~Vl~rrH 63 (100)
.|...|..|+.|+++|-.|.|.+...
T Consensus 49 ~lg~iP~~Gd~v~~~~~~f~V~~~~~ 74 (86)
T 2pls_A 49 LLGRLPQTGDITFWENWRLEVIDMDS 74 (86)
T ss_dssp HHTSCCCTTCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCCEEEECCEEEEEEEeeC
Confidence 35667999999999999999998763
No 6
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=62.96 E-value=6.8 Score=24.41 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=22.2
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 034231 38 CFPPNLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 38 ~Lp~~pqpG~~le~eg~sY~Vl~rrH 63 (100)
.|...|+.|+.|+++|-.|.|.+...
T Consensus 47 ~lg~iP~~Gd~v~~~~~~f~V~~~~~ 72 (86)
T 2p4p_A 47 MLRXIPXXTDFVLYDXYXFEIIDTEN 72 (86)
T ss_dssp HHCSCCCTTCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCcEEEEeeEEEEEEEccC
Confidence 35567999999999999999998763
No 7
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=61.65 E-value=10 Score=23.50 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.0
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEEE
Q 034231 39 FPPNLQCGESVTIEGQAYTISAVTHR 64 (100)
Q Consensus 39 Lp~~pqpG~~le~eg~sY~Vl~rrHr 64 (100)
|..-|+.|+.|+++|-.|.|.+...+
T Consensus 46 lg~iP~~Gd~v~~~~~~f~V~~~~~~ 71 (83)
T 3llb_A 46 FGHLPKRNEVVELGEFRFRVLNADSR 71 (83)
T ss_dssp HSSCCCTTCEEEETTEEEEEEEECSS
T ss_pred hCcCCCCCCEEEECCEEEEEEEeeCC
Confidence 45679999999999999999987543
No 8
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=60.26 E-value=7.9 Score=24.39 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=21.6
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEE
Q 034231 39 FPPNLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 39 Lp~~pqpG~~le~eg~sY~Vl~rrH 63 (100)
|...|..|+.|+++|-.|.|.+...
T Consensus 56 lg~iP~~Gd~v~~~~~~f~V~~~~~ 80 (92)
T 2o3g_A 56 LQTIPDVGDFADFHGWRFEVVEKEG 80 (92)
T ss_dssp HTSCCCTTCEEEETTEEEEEEEEET
T ss_pred hCCCCCCCCEEEECCEEEEEEEeeC
Confidence 5567999999999999999998763
No 9
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=60.24 E-value=7.4 Score=24.55 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.6
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEE
Q 034231 39 FPPNLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 39 Lp~~pqpG~~le~eg~sY~Vl~rrH 63 (100)
|...|..|+.|+++|-.|.|.+...
T Consensus 55 lg~iP~~Ge~v~~~~~~f~V~~~d~ 79 (91)
T 2pli_A 55 LGHLPVRGEKVLIGGLQFTVARADN 79 (91)
T ss_dssp HSSCCCTTCEEEETTEEEEEEEECS
T ss_pred hCCCCCCCCEEEECCEEEEEEEEeC
Confidence 5567999999999999999998753
No 10
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=59.47 E-value=8.1 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.2
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 034231 38 CFPPNLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 38 ~Lp~~pqpG~~le~eg~sY~Vl~rrH 63 (100)
.|...|+.|+.|+++|-.|.|.+...
T Consensus 57 ~lg~iP~~Gd~v~~~~~~f~V~~~d~ 82 (94)
T 2oai_A 57 YFGRIPHVGEYFDWAGWRIEIVDLDG 82 (94)
T ss_dssp HHSSCCCTTCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCCEEEECCEEEEEEEEcC
Confidence 35567999999999999999998764
No 11
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=59.45 E-value=12 Score=23.63 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=21.6
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEE
Q 034231 38 CFPPNLQCGESVTIEGQAYTISAVT 62 (100)
Q Consensus 38 ~Lp~~pqpG~~le~eg~sY~Vl~rr 62 (100)
.|...|+.|+.|+++|-.|.|.+..
T Consensus 56 ~lg~iP~~Gd~v~~~~~~f~V~~~d 80 (93)
T 2nqw_A 56 IKQELPHVGDTAVYEPFRFQVTQMD 80 (93)
T ss_dssp HHCSCCCTTCEEEETTEEEEEEEEC
T ss_pred HhCcCCCCCCEEEECCEEEEEEEee
Confidence 3566799999999999999999875
No 12
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=54.72 E-value=19 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCCCCCCeEEEcCeEEEEEEEEEEEE
Q 034231 41 PNLQCGESVTIEGQAYTISAVTHRYQ 66 (100)
Q Consensus 41 ~~pqpG~~le~eg~sY~Vl~rrHrYq 66 (100)
....+|..|+++|+-|.|.+..|.=.
T Consensus 10 ~dlk~G~~I~~dg~p~~Vve~~~~Kp 35 (191)
T 3a5z_B 10 NDFRAGLKIMLDGEPYAVEASEFVKP 35 (191)
T ss_dssp TTCCTTCEEEETTEEEEEEEEEEECC
T ss_pred HHCCCCCEEEECCEEEEEEEEEEEcC
Confidence 35789999999999999999999643
No 13
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=52.72 E-value=16 Score=24.27 Aligned_cols=24 Identities=4% Similarity=0.111 Sum_probs=20.8
Q ss_pred CCCCCCCCeEEEcCeEEEEEEEEE
Q 034231 40 PPNLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 40 p~~pqpG~~le~eg~sY~Vl~rrH 63 (100)
...|..|+.|+++|-.|.|++..-
T Consensus 78 g~iP~~Gd~v~~~g~~f~V~~~d~ 101 (113)
T 3ded_A 78 GRVPSVTDRFEWNGFSFEVVDMDR 101 (113)
T ss_dssp CSSCCTTCEEEETTEEEEEEEEET
T ss_pred CCCCCCCCEEEECCEEEEEEEEeC
Confidence 456999999999999999998754
No 14
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=50.31 E-value=14 Score=26.37 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.5
Q ss_pred CCCCCCeEEEcCeEEEEEEEEE
Q 034231 42 NLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 42 ~pqpG~~le~eg~sY~Vl~rrH 63 (100)
+--|+++|+++|+.|+|.....
T Consensus 39 tssP~~~V~~~G~~Ylvg~~Ck 60 (137)
T 1uuz_A 39 PSSPSTSLSLEGQPYVLANSCK 60 (137)
T ss_dssp CBCCCEEEEETTEEEEEEEEEC
T ss_pred CCCCCeeEEECCEEEEEEcccC
Confidence 3457999999999999998764
No 15
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=50.20 E-value=7.6 Score=24.36 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=21.4
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEE
Q 034231 39 FPPNLQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 39 Lp~~pqpG~~le~eg~sY~Vl~rrH 63 (100)
|...|..|+.|+++|-.|.|.+...
T Consensus 54 lg~iP~~Gd~v~~~~~~f~V~~~d~ 78 (90)
T 2p13_A 54 FGYIPAAGEQITVDGLIFEIVSVNK 78 (90)
T ss_dssp HSSCCCTTCEEEETTEEEEECCBCS
T ss_pred hCCCCCCCCEEEECCEEEEEEEEeC
Confidence 5567999999999999999998653
No 16
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=49.12 E-value=42 Score=25.35 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=31.4
Q ss_pred CCCCCCeEEEcC------eEEEEEEEEEEEEEecceEEecceeEEEeecchhhH
Q 034231 42 NLQCGESVTIEG------QAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYIL 89 (100)
Q Consensus 42 ~pqpG~~le~eg------~sY~Vl~rrHrYqLr~GrY~l~~i~L~Vq~~~Ry~~ 89 (100)
..+||..|.+.| ..|+|.+++|.+. .|.|. ..|.+....-|+.
T Consensus 298 l~~pg~~V~v~g~~~~~dg~~~I~~v~h~~~--~~G~~---T~l~l~~~~~~~~ 346 (361)
T 3cdd_A 298 LWNINTLVPVIDEIMGLDEEMLIASILFSED--DAGRL---AVISVVRPDAMDI 346 (361)
T ss_dssp BCCSSCEEEEEETTTTEEEEEEEEEEEEEEE--TTEEE---EEEEEECTTTTCC
T ss_pred ccCCCCEEEEecCCCCcCceEEEEEEEEEec--CCccE---EEEEEeCccccCC
Confidence 358999988654 4799999999996 55676 5577766655543
No 17
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=47.96 E-value=23 Score=24.37 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEE
Q 034231 42 NLQCGESVTIEGQAYTISAVTHR 64 (100)
Q Consensus 42 ~pqpG~~le~eg~sY~Vl~rrHr 64 (100)
...+|..|+++|+-|.|.+..|.
T Consensus 15 ~lr~G~~I~~~g~p~~V~e~~~~ 37 (136)
T 2eif_A 15 SLKVGQYVMIDGVPCEIVDISVS 37 (136)
T ss_dssp GCCTTSEEEETTEEEEEEEEEEC
T ss_pred HCcCCCEEEECCEEEEEEEEEee
Confidence 46899999999999999999874
No 18
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=47.94 E-value=26 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEEE
Q 034231 42 NLQCGESVTIEGQAYTISAVTHRY 65 (100)
Q Consensus 42 ~pqpG~~le~eg~sY~Vl~rrHrY 65 (100)
...+|..|+++|+-|.|.+..|.=
T Consensus 13 ~lrkG~~i~~~g~p~~Vve~~~~K 36 (136)
T 1bkb_A 13 ELKEGSYVVIDGEPCRVVEIEKSK 36 (136)
T ss_dssp GCCTTCEEEETTEEEEEEEEEEEC
T ss_pred HccCCCEEEECCEEEEEEEEEEec
Confidence 467899999999999999998764
No 19
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=47.27 E-value=11 Score=23.57 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=21.8
Q ss_pred EcCCCCCCCCeEEE--cCeEEEEEEEEE
Q 034231 38 CFPPNLQCGESVTI--EGQAYTISAVTH 63 (100)
Q Consensus 38 ~Lp~~pqpG~~le~--eg~sY~Vl~rrH 63 (100)
.|...|..|+.|++ +|-.|.|.+...
T Consensus 52 ~lg~iP~~Gd~v~~~~~~~~f~V~~~~~ 79 (93)
T 2r2z_A 52 ALGTIPDEGEKPSFEVGNIKLTAEEMEG 79 (93)
T ss_dssp HHSSCCCTTCCCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCCEEEEecCCEEEEEEEeeC
Confidence 35567999999988 999999998763
No 20
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=47.17 E-value=19 Score=28.53 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=25.2
Q ss_pred CCCCCCCeEEEcC-e-------EEEEEEEEEEEEEecceEE
Q 034231 41 PNLQCGESVTIEG-Q-------AYTISAVTHRYQLRKGKYE 73 (100)
Q Consensus 41 ~~pqpG~~le~eg-~-------sY~Vl~rrHrYqLr~GrY~ 73 (100)
....||.+|++.| . .|+|.+++|... ..|.|.
T Consensus 320 ~~L~~G~~f~L~g~~~~~~~~~~~lIt~v~H~~~-~~~~y~ 359 (491)
T 2p5z_X 320 SLLMPGLEIKVQGDDAPAVFRKGVLITGVTTSAA-RDRSYE 359 (491)
T ss_dssp SSCCTTEEEEECCSSSCHHHHHCEEEEEEEEEEE-TTTCCE
T ss_pred ccccCCcEEeecCCCCChhhCCcEEEEEEEEEEe-cCceEE
Confidence 5578999999999 3 799999999874 235554
No 21
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=45.25 E-value=27 Score=24.15 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.3
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEEE
Q 034231 42 NLQCGESVTIEGQAYTISAVTHRY 65 (100)
Q Consensus 42 ~pqpG~~le~eg~sY~Vl~rrHrY 65 (100)
...+|.+|+++|+-|.|.+..|.=
T Consensus 11 ~lkkG~~i~~~g~p~~Vve~~~~K 34 (138)
T 1iz6_A 11 KLKPGRYIIIDDEPCRIVNITVSS 34 (138)
T ss_dssp GCCTTSEEEETTEEEEEEEEEECC
T ss_pred HccCCCEEEECCEEEEEEEEEeec
Confidence 467999999999999999998863
No 22
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=42.65 E-value=31 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.1
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEE
Q 034231 42 NLQCGESVTIEGQAYTISAVTHR 64 (100)
Q Consensus 42 ~pqpG~~le~eg~sY~Vl~rrHr 64 (100)
...+|.+|+++|+-|.|.+..|.
T Consensus 11 ~lrkG~~i~~~g~p~~Vve~~~~ 33 (138)
T 3cpf_A 11 ALRKNGFVVLKGRPCKIVEMSTS 33 (138)
T ss_dssp GCCTTSEEEETTEEEEEEEEEEE
T ss_pred HCcCCCEEEECCEEEEEEEEEec
Confidence 36789999999999999999987
No 23
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=41.72 E-value=13 Score=26.49 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=17.6
Q ss_pred CCCCCeEEEcCeEEEEEEEEE
Q 034231 43 LQCGESVTIEGQAYTISAVTH 63 (100)
Q Consensus 43 pqpG~~le~eg~sY~Vl~rrH 63 (100)
.-|+++|+++|+.|+|.....
T Consensus 38 ssP~~~V~~~G~~Ylvg~~Ck 58 (136)
T 1xs0_A 38 YTPAQTVTLGDETYQVMSACK 58 (136)
T ss_dssp EEEEEEEEEETEEEEEEEEEC
T ss_pred CCCCeeEEECCEEEEEEcccC
Confidence 346899999999999998753
No 24
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=40.58 E-value=18 Score=22.43 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=20.7
Q ss_pred EcCCCCCCCC--eEEEcC----eEEEEEEEE
Q 034231 38 CFPPNLQCGE--SVTIEG----QAYTISAVT 62 (100)
Q Consensus 38 ~Lp~~pqpG~--~le~eg----~sY~Vl~rr 62 (100)
.|...|..|+ .|+++| -.|.|.+..
T Consensus 44 ~lg~iP~~Gd~~~v~~~~~~~~~~f~V~~~~ 74 (87)
T 2rk5_A 44 GVGTIPSQEEKEHFEVESNGKHLELINDKVK 74 (87)
T ss_dssp HHCSCCCSSSCCEEEEEETTEEEEEEEEEEE
T ss_pred HhCcCCCCCCcEEEEECCceEEEEEEEEEEe
Confidence 3556799999 999998 789998876
No 25
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=39.84 E-value=15 Score=24.99 Aligned_cols=11 Identities=18% Similarity=0.604 Sum_probs=9.1
Q ss_pred CCCCCCCeEEE
Q 034231 41 PNLQCGESVTI 51 (100)
Q Consensus 41 ~~pqpG~~le~ 51 (100)
.||.||+.|++
T Consensus 34 ~np~CGD~i~l 44 (129)
T 3lvl_A 34 GAPACGDVMKL 44 (129)
T ss_dssp ECTTTCCEEEE
T ss_pred cCCCCCCEEEE
Confidence 38999998775
No 26
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=38.32 E-value=36 Score=24.96 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEEEE
Q 034231 42 NLQCGESVTIEGQAYTISAVTHRYQ 66 (100)
Q Consensus 42 ~pqpG~~le~eg~sY~Vl~rrHrYq 66 (100)
...+|..|+++|+-|.|.+..|.=.
T Consensus 9 dlk~G~~I~~dg~p~~Vve~~~~Kp 33 (191)
T 3oyy_A 9 EFRAGQVANINGAPWVIQKAEFNKS 33 (191)
T ss_dssp GCCTTCEEEETTEEEEEEEEEEECC
T ss_pred hCCCCCEEEECCEEEEEEEEEeeeC
Confidence 4678999999999999999998643
No 27
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=38.28 E-value=36 Score=24.91 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.9
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEE
Q 034231 42 NLQCGESVTIEGQAYTISAVTHR 64 (100)
Q Consensus 42 ~pqpG~~le~eg~sY~Vl~rrHr 64 (100)
...+|..|+++|+-|.|.+..|.
T Consensus 11 dlkkG~~I~~dG~p~~Vve~~~~ 33 (191)
T 3tre_A 11 EFRGGLKVMVDGDPCSIIDNEFV 33 (191)
T ss_dssp GCCTTCEEEETTEEEEEEEEEEE
T ss_pred HCCCCCEEEECCEEEEEEEEEEe
Confidence 46789999999999999999995
No 28
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=35.51 E-value=43 Score=24.31 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCCCeEEEcCeEEEEEEEEEEEE
Q 034231 43 LQCGESVTIEGQAYTISAVTHRYQ 66 (100)
Q Consensus 43 pqpG~~le~eg~sY~Vl~rrHrYq 66 (100)
..+|.+|+++|+-|.|.+..|.=.
T Consensus 7 lkkG~~i~~dg~p~~Vve~~~~Kp 30 (184)
T 1ueb_A 7 LRPGTKVKMDGGLWECVEYQHQKL 30 (184)
T ss_dssp CCTTCEEEETTEEEEEEEEEEEEE
T ss_pred cCCCCEEEECCEEEEEEEEEEeeC
Confidence 578999999999999999999744
No 29
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=34.30 E-value=51 Score=23.83 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCCCCCCCeEEEcCeEEEEEEEEEEEEEecce
Q 034231 40 PPNLQCGESVTIEGQAYTISAVTHRYQLRKGK 71 (100)
Q Consensus 40 p~~pqpG~~le~eg~sY~Vl~rrHrYqLr~Gr 71 (100)
-....+|.+|+++|+-|.|.+..|. +-||
T Consensus 33 a~dlrkG~~I~idG~p~~Vve~~~~---KpGK 61 (167)
T 3er0_A 33 CSALRKNGFVVIKSRPCKIVDMSTS---KTGK 61 (167)
T ss_dssp TTTCCTTCEEEETTEEEEEEEEEEE---CCSS
T ss_pred HHHccCCCEEEECCEEEEEEEEEEe---CCCC
Confidence 3458899999999999999999886 4555
No 30
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=33.28 E-value=91 Score=23.97 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=31.5
Q ss_pred CCCCCCeEEEcC------eEEEEEEEEEEEEEecceEEecceeEEEeecchhhH
Q 034231 42 NLQCGESVTIEG------QAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYIL 89 (100)
Q Consensus 42 ~pqpG~~le~eg------~sY~Vl~rrHrYqLr~GrY~l~~i~L~Vq~~~Ry~~ 89 (100)
..+||..|.+.| ..|+|.+++|.+.- .|.|. ..|.+....-|+.
T Consensus 294 ~~~pg~~V~v~g~~~~~dg~~lI~~vtH~~~~-~~G~~---T~l~l~~~~~~~~ 343 (381)
T 3d37_A 294 LWQPGLRVHVIDDEHGIDAVFFLMGRRFMLSR-MDGTQ---TELRLKEDGIWTP 343 (381)
T ss_dssp BCCTTCEEEEEETTTTEEEEEEEEEEEEEEET-TTEEE---EEEEEEETTCSST
T ss_pred ccCCCCEEEEecCCCCcccEEEEEEEEEEEcC-CCCeE---EEEEEeCCccccC
Confidence 458999987754 47999999999842 46676 4577766665553
No 31
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=30.12 E-value=64 Score=24.12 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=22.8
Q ss_pred CCCCCCCCeEEEcCeEEEEEEEEEEE
Q 034231 40 PPNLQCGESVTIEGQAYTISAVTHRY 65 (100)
Q Consensus 40 p~~pqpG~~le~eg~sY~Vl~rrHrY 65 (100)
-....+|..|+++|+-|.|.+..|.=
T Consensus 34 a~dlKkG~~I~idG~p~~Vve~~hvK 59 (215)
T 1yby_A 34 AGDFKNGVTFELDGQIFQVIEFQHVK 59 (215)
T ss_dssp GGGCCTTCEEEETTEEEEEEEEEEEC
T ss_pred hhhccCCCEEEECCEEEEEEEEEEEc
Confidence 44688999999999999999999863
No 32
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=28.83 E-value=67 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCCCCCCeEEEcCeEEEEEEEEEE
Q 034231 41 PNLQCGESVTIEGQAYTISAVTHR 64 (100)
Q Consensus 41 ~~pqpG~~le~eg~sY~Vl~rrHr 64 (100)
....+|.+|+++|+-|.|.+..|.
T Consensus 34 ~dlrkG~~I~idG~p~~Vve~~~~ 57 (174)
T 1x6o_A 34 GALKKGGYVCINGRPCKVIDLSVS 57 (174)
T ss_dssp GGCCTTCEEEETTEEEEEEEEEEC
T ss_pred HHccCCCEEEECCEEEEEEEEEec
Confidence 347899999999999999999886
No 33
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=28.45 E-value=76 Score=22.91 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCCCCCCeEEEcCeEEEEEEEEEEEEEecce
Q 034231 41 PNLQCGESVTIEGQAYTISAVTHRYQLRKGK 71 (100)
Q Consensus 41 ~~pqpG~~le~eg~sY~Vl~rrHrYqLr~Gr 71 (100)
....+|.+|+++|+-|.|.+..|. +-||
T Consensus 32 ~dlrkG~~I~idG~P~~Vve~~~~---KpGK 59 (167)
T 3hks_A 32 GNIRKGGHIVIKNRPCKVVEVSTS---KTGK 59 (167)
T ss_dssp GGCCTTSEEEETTEEEEEEEEEEE---CSST
T ss_pred HHccCCCEEEECCEEEEEEEEEEe---CCCC
Confidence 347899999999999999999887 4454
No 34
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=26.98 E-value=67 Score=20.73 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=15.4
Q ss_pred CCCCCCCCeEEE----cCeEEEEEEEE
Q 034231 40 PPNLQCGESVTI----EGQAYTISAVT 62 (100)
Q Consensus 40 p~~pqpG~~le~----eg~sY~Vl~rr 62 (100)
.+.|+||+.+.+ +|+.+.+.+..
T Consensus 30 e~~~~~Gd~~~v~~~~~~~~~~~i~vt 56 (103)
T 1te7_A 30 ESHFKTGDVLRVGRFEDDGYFCTIEVT 56 (103)
T ss_dssp GCCCCTTSEEEEEETTTEEEEEEEEEE
T ss_pred CCCCCCCCEEEEEECCCCcEEEEEEEE
Confidence 457999999999 34445554443
No 35
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=26.09 E-value=48 Score=24.01 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=27.7
Q ss_pred CccceEEEEeCCCCceeeeEEcCCC------CCCCCeEEEcCeE
Q 034231 18 NIHPYKVVEITPPPKCLGIRCFPPN------LQCGESVTIEGQA 55 (100)
Q Consensus 18 ~slp~EV~~~t~p~r~LG~~~Lp~~------pqpG~~le~eg~s 55 (100)
+..|.++++....++.-|++.|++. ..+|+.|+++|+.
T Consensus 20 ~~~p~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr 63 (187)
T 3tiw_A 20 KSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63 (187)
T ss_dssp --CCCEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECST
T ss_pred ccCCCeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCC
Confidence 4467676664445555889999986 7899999999954
No 36
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=25.88 E-value=53 Score=24.44 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.0
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEEEEE
Q 034231 39 FPPNLQCGESVTIEGQAYTISAVTHRYQ 66 (100)
Q Consensus 39 Lp~~pqpG~~le~eg~sY~Vl~rrHrYq 66 (100)
++.+-..||||+++|..=.|.+..-|+.
T Consensus 125 ~~~pf~vGD~I~i~~~~G~V~~I~l~~T 152 (285)
T 3udc_A 125 FEDQFSVGDYVTINGISGTVEEIGLRVT 152 (285)
T ss_dssp HTTSCCTTCEEEETTEEEEEEEECSSEE
T ss_pred hhCCccCCCEEEECCEEEEEEEeeeeEE
Confidence 5678899999999999999988877765
No 37
>3q3y_A HEVB EV93 3C protease; cysteine trypsin-like protease, 3C cysteine protease (picorn antiviral compound 1 (AG7404); HET: XNV; 1.32A {Human enterovirus B} SCOP: b.47.1.4 PDB: 3q3x_A* 3ruo_A* 3zyd_A 3zz5_A* 3zz6_A* 3zz7_A* 3zz8_A* 3zz9_A* 3zza_A* 3zzb_A* 2ztx_A 2vb0_A 2zty_A 2ztz_A 2zu3_A* 3zye_A 3zz3_A 2zu1_A 3zz4_A 3zzc_A* ...
Probab=25.56 E-value=97 Score=23.04 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=25.3
Q ss_pred EEcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecc
Q 034231 37 RCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKG 70 (100)
Q Consensus 37 ~~Lp~~pqpG~~le~eg~sY~Vl~rrHrYqLr~G 70 (100)
+=+|.--.||+.|.++|+.|.|+. .|.|..+
T Consensus 37 ~vvPtHa~~~~~i~i~G~~~~v~d---~~~L~~~ 67 (191)
T 3q3y_A 37 AVLPRHAKPGPTILMNDQEVGVLD---AKELVDK 67 (191)
T ss_dssp EEEEGGGCCCSEEEETTEEEEEEE---EEEEECT
T ss_pred EEEECCCCCCCEEEECCEEEEeee---EEEEEcC
Confidence 445666789999999999999988 7777754
No 38
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural Pro; 2.10A {Enterobacteria phage MU} SCOP: b.106.1.1 b.106.1.1
Probab=23.96 E-value=1.7e+02 Score=22.34 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=30.3
Q ss_pred CCCCCCeEEEc-------CeEEEEEEEEEEEEEecceEEecceeEEEeecchh
Q 034231 42 NLQCGESVTIE-------GQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRY 87 (100)
Q Consensus 42 ~pqpG~~le~e-------g~sY~Vl~rrHrYqLr~GrY~l~~i~L~Vq~~~Ry 87 (100)
..+||..|.+. |+.|+|.+++|.+. ..|.|. ..|.+....-|
T Consensus 291 ~~~pg~~V~v~g~~~~~dg~~~~I~~v~H~~~-~~~G~~---T~l~l~~~~~~ 339 (379)
T 1wru_A 291 LWMPNLLVTIDASKYAIKTTELLVSKVTLILN-DQDGLK---TRVSLAPREGF 339 (379)
T ss_dssp BCCSSCEEEEEEGGGTEECCCEEEEEEEEEEE-TTTEEE---EEEEEEEGGGG
T ss_pred ccCCCCEEEEecCCCCccCcEEEEEEEEEEEe-CCCCeE---EEEEEeCCccc
Confidence 45899999764 45899999999974 245676 45666666555
No 39
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=22.14 E-value=57 Score=24.31 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=24.6
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEEEEE
Q 034231 38 CFPPNLQCGESVTIEGQAYTISAVTHRYQ 66 (100)
Q Consensus 38 ~Lp~~pqpG~~le~eg~sY~Vl~rrHrYq 66 (100)
-++.+-..||||+++|..-.|.+..-||.
T Consensus 125 ~~~~pf~vGD~I~i~g~~G~V~~I~l~~T 153 (286)
T 2vv5_A 125 VMFRPFRAGEYVDLGGVAGTVLSVQIFST 153 (286)
T ss_dssp HTTCSSCTTCEEESSSCEEEEEEECSSEE
T ss_pred HhcCCccCCCEEEECCEEEEEEEEEeEEE
Confidence 35778899999999999999988877774
No 40
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=21.92 E-value=62 Score=22.78 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.5
Q ss_pred eeeeEEcCCCCCCCCeEEEcCe
Q 034231 33 CLGIRCFPPNLQCGESVTIEGQ 54 (100)
Q Consensus 33 ~LG~~~Lp~~pqpG~~le~eg~ 54 (100)
..|.+-||+..++|+.|++-|+
T Consensus 44 ~ygsaf~pd~v~~GDivTvsgr 65 (119)
T 2wkd_A 44 AYGSAFMPDFIQMGDTVTVSGR 65 (119)
T ss_dssp CEEEEECCTTCCTTCEEEEEEE
T ss_pred EEEEEeccccccCCcEEEEece
Confidence 3789999999999999999664
No 41
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=21.26 E-value=67 Score=23.68 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=27.5
Q ss_pred CCccceEEEEeCCCCceeeeEEcCCC------CCCCCeEEEcCeE
Q 034231 17 NNIHPYKVVEITPPPKCLGIRCFPPN------LQCGESVTIEGQA 55 (100)
Q Consensus 17 ~~slp~EV~~~t~p~r~LG~~~Lp~~------pqpG~~le~eg~s 55 (100)
.+..|.++++....++.=|++.|++. ..+|+.|+++|+.
T Consensus 22 ~~~~p~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr 66 (211)
T 3qwz_A 22 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXK 66 (211)
T ss_dssp ----CEEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECST
T ss_pred cccCCCeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCC
Confidence 34578777764445555788999886 7899999999975
No 42
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=20.62 E-value=33 Score=19.44 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.3
Q ss_pred CCCCeEEEcCeEEEEEEEEEE
Q 034231 44 QCGESVTIEGQAYTISAVTHR 64 (100)
Q Consensus 44 qpG~~le~eg~sY~Vl~rrHr 64 (100)
.-|+.|..+|..|..++-++-
T Consensus 9 ~~Gd~Vty~G~~Y~c~q~hts 29 (45)
T 1ed7_A 9 TAGQLVTYNGKTYKCLQPHTS 29 (45)
T ss_dssp CTTCCEEETTEEECBCSCEEE
T ss_pred cCCCEEEECCeEEEEEecCcC
Confidence 469999999999988876654
No 43
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=20.32 E-value=76 Score=20.67 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=18.3
Q ss_pred eEEcCCCCCCCCeEEEcCeEE
Q 034231 36 IRCFPPNLQCGESVTIEGQAY 56 (100)
Q Consensus 36 ~~~Lp~~pqpG~~le~eg~sY 56 (100)
.+..|+.++||+.+.+.|+=.
T Consensus 41 ~v~ip~g~~~G~~~rl~G~G~ 61 (109)
T 3i38_A 41 LLTVPPGSQAGQRLRIKGKGL 61 (109)
T ss_dssp EEEECTTCCTTCEEEETTCSC
T ss_pred EEeeCCCcCcCeEEEECCccC
Confidence 578899999999999999764
Done!