Query 034233
Match_columns 100
No_of_seqs 109 out of 1041
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 11:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 99.8 1.7E-20 3.7E-25 153.7 7.0 90 1-92 449-541 (545)
2 PRK12849 groEL chaperonin GroE 99.8 1.4E-20 3.1E-25 154.3 6.3 91 1-93 448-541 (542)
3 PRK12850 groEL chaperonin GroE 99.8 2.4E-20 5.2E-25 153.0 6.8 91 1-92 449-543 (544)
4 PRK00013 groEL chaperonin GroE 99.8 3.2E-20 6.9E-25 152.3 6.7 85 1-86 448-535 (542)
5 PLN03167 Chaperonin-60 beta su 99.8 1.3E-19 2.9E-24 150.3 6.9 79 1-79 505-586 (600)
6 PRK14104 chaperonin GroEL; Pro 99.8 3.7E-19 8.1E-24 146.1 7.1 92 1-93 449-543 (546)
7 PRK12851 groEL chaperonin GroE 99.8 8.3E-19 1.8E-23 143.8 6.7 78 1-79 449-529 (541)
8 COG0459 GroL Chaperonin GroEL 99.8 1.1E-18 2.5E-23 143.0 6.2 78 1-78 436-518 (524)
9 PTZ00114 Heat shock protein 60 99.7 3.1E-18 6.8E-23 140.7 6.1 78 1-78 464-544 (555)
10 CHL00093 groEL chaperonin GroE 99.7 3E-18 6.4E-23 140.1 5.7 75 1-76 450-527 (529)
11 PTZ00212 T-complex protein 1 s 99.7 8.3E-18 1.8E-22 137.3 6.3 76 1-76 447-528 (533)
12 cd03336 TCP1_beta TCP-1 (CTT o 99.7 9.3E-18 2E-22 136.5 6.0 75 1-75 435-515 (517)
13 TIGR02346 chap_CCT_theta T-com 99.7 1.2E-17 2.6E-22 136.5 5.7 80 1-80 439-526 (531)
14 TIGR02347 chap_CCT_zeta T-comp 99.7 1.3E-17 2.8E-22 136.4 5.2 76 1-76 447-528 (531)
15 TIGR02341 chap_CCT_beta T-comp 99.7 1.6E-17 3.4E-22 135.5 5.2 75 1-75 436-516 (519)
16 cd03341 TCP1_theta TCP-1 (CTT 99.7 3.6E-17 7.7E-22 131.9 7.0 73 1-73 391-471 (472)
17 cd03342 TCP1_zeta TCP-1 (CTT o 99.7 2.2E-17 4.7E-22 133.6 5.7 73 1-73 404-482 (484)
18 cd03335 TCP1_alpha TCP-1 (CTT 99.7 2.6E-17 5.7E-22 134.1 6.0 75 1-75 439-527 (527)
19 TIGR02344 chap_CCT_gamma T-com 99.7 2.1E-17 4.6E-22 134.4 5.4 75 1-75 442-523 (525)
20 TIGR02342 chap_CCT_delta T-com 99.7 4.2E-17 9.1E-22 132.7 6.8 73 1-73 438-516 (517)
21 TIGR02348 GroEL chaperonin Gro 99.7 3.1E-17 6.7E-22 134.1 6.0 74 1-75 447-523 (524)
22 TIGR02345 chap_CCT_eta T-compl 99.7 3.9E-17 8.4E-22 133.1 5.5 73 1-73 441-519 (522)
23 cd03344 GroEL GroEL_like type 99.7 7.8E-17 1.7E-21 131.7 7.3 71 1-72 446-519 (520)
24 TIGR02340 chap_CCT_alpha T-com 99.7 3.6E-17 7.7E-22 133.6 5.3 78 1-78 443-534 (536)
25 cd03338 TCP1_delta TCP-1 (CTT 99.7 4.7E-17 1E-21 132.0 5.7 72 1-72 437-514 (515)
26 cd03343 cpn60 cpn60 chaperonin 99.7 5.3E-17 1.2E-21 131.7 6.0 73 1-73 438-516 (517)
27 cd03340 TCP1_eta TCP-1 (CTT or 99.7 8.5E-17 1.8E-21 130.9 6.7 74 1-74 440-520 (522)
28 cd03339 TCP1_epsilon TCP-1 (CT 99.7 1.1E-16 2.4E-21 130.4 6.9 72 1-72 448-526 (526)
29 TIGR02339 thermosome_arch ther 99.7 1.2E-16 2.6E-21 129.9 5.8 72 1-72 441-518 (519)
30 cd03337 TCP1_gamma TCP-1 (CTT 99.7 1.2E-16 2.6E-21 129.0 5.6 72 1-72 401-479 (480)
31 cd00309 chaperonin_type_I_II c 99.6 4.8E-16 1E-20 124.4 5.9 72 1-72 387-464 (464)
32 KOG0356 Mitochondrial chaperon 99.6 4.5E-16 9.7E-21 127.3 5.1 75 1-78 464-541 (550)
33 TIGR02343 chap_CCT_epsi T-comp 99.6 6.2E-16 1.3E-20 126.4 6.0 72 1-72 452-530 (532)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 99.6 2E-15 4.4E-20 119.7 7.6 74 2-75 407-485 (485)
35 KOG0361 Chaperonin complex com 99.5 9.8E-15 2.1E-19 116.9 5.7 77 3-79 446-528 (543)
36 KOG0363 Chaperonin complex com 99.5 1.6E-14 3.4E-19 115.2 3.4 76 4-79 443-524 (527)
37 KOG0358 Chaperonin complex com 99.2 8.3E-12 1.8E-16 100.1 3.7 70 4-73 458-533 (534)
38 KOG0362 Chaperonin complex com 99.1 8.9E-11 1.9E-15 95.8 5.9 85 4-89 445-535 (537)
39 KOG0364 Chaperonin complex com 99.0 1.9E-10 4.1E-15 93.2 4.4 75 2-77 444-524 (527)
40 KOG0357 Chaperonin complex com 99.0 3E-10 6.4E-15 89.7 4.0 71 4-74 319-396 (400)
41 KOG0360 Chaperonin complex com 98.3 2.6E-07 5.6E-12 75.7 1.1 78 3-80 451-542 (545)
42 KOG0359 Chaperonin complex com 98.0 3.2E-06 6.9E-11 69.0 2.9 71 3-73 440-514 (520)
43 PF11608 Limkain-b1: Limkain b 31.9 27 0.00058 23.0 1.1 10 3-12 23-32 (90)
44 PF10632 He_PIG_assoc: He_PIG 28.8 19 0.0004 18.9 -0.0 12 89-100 7-18 (29)
45 PF13404 HTH_AsnC-type: AsnC-t 27.1 72 0.0016 17.5 2.2 21 1-21 18-39 (42)
46 PF10547 P22_AR_N: P22_AR N-te 25.5 87 0.0019 21.3 2.8 23 1-23 24-47 (120)
47 PF07818 HCNGP: HCNGP-like pro 25.1 81 0.0017 20.6 2.5 48 4-59 32-80 (96)
48 PF06972 DUF1296: Protein of u 21.7 86 0.0019 19.1 2.0 20 4-23 25-45 (60)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.82 E-value=1.7e-20 Score=153.70 Aligned_cols=90 Identities=34% Similarity=0.557 Sum_probs=78.3
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|.++||+|||+|+.+ +.+|++.+++++|||+.+|+++||++.|||||+.|++++|++| +|++|||+|++|+..|+.
T Consensus 449 ~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 449 APIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK 528 (545)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Confidence 4899999999999999 9999886678899999999999999999999999999999999 999999999999987765
Q ss_pred chhhhhccCCCCCCC
Q 034233 78 KHKKYKKKKKLDDVG 92 (100)
Q Consensus 78 ~~~~~~~~~~~~~~~ 92 (100)
..+ ..|+.+..||
T Consensus 529 ~~~--~~~~~~~~~~ 541 (545)
T PRK12852 529 DAA--PAMPAGGGMG 541 (545)
T ss_pred CCC--CCCCCCCCCC
Confidence 332 2255554444
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.82 E-value=1.4e-20 Score=154.34 Aligned_cols=91 Identities=33% Similarity=0.517 Sum_probs=82.8
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|.++||+|||+|+.+ +.+|++.+ .++|||+.+|+++||++.|||||+.||+++|++| +|++||++|++|+..|.+
T Consensus 448 ~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 526 (542)
T PRK12849 448 APLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEE 526 (542)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence 4899999999999999 99998774 5799999999999999999999999999999999 999999999999998854
Q ss_pred chhhhhccCCCCCCCc
Q 034233 78 KHKKYKKKKKLDDVGI 93 (100)
Q Consensus 78 ~~~~~~~~~~~~~~~~ 93 (100)
.. .|.+|++|++||-
T Consensus 527 ~~-~~~~~~~~~~~~~ 541 (542)
T PRK12849 527 ED-PPGGMGGMGGMGH 541 (542)
T ss_pred CC-CCCCCCCCCCCCC
Confidence 43 4889999998873
No 3
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.81 E-value=2.4e-20 Score=152.99 Aligned_cols=91 Identities=33% Similarity=0.513 Sum_probs=80.8
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|.++||+|||+|+.+ +.+|++.+ .++|||+.+|+++||++.|||||+.|++++|+.| +|++|||+|++|+..|..
T Consensus 449 ~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (544)
T PRK12850 449 EPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKK 527 (544)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Confidence 4899999999999999 99998764 4789999999999999999999999999999999 999999999999998765
Q ss_pred chh-hhhccCCCCCCC
Q 034233 78 KHK-KYKKKKKLDDVG 92 (100)
Q Consensus 78 ~~~-~~~~~~~~~~~~ 92 (100)
.++ +....|+|+|||
T Consensus 528 ~~~~~~~~~~~~~~~~ 543 (544)
T PRK12850 528 AAAAAAGPGPGMGGMG 543 (544)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 433 556667777776
No 4
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.81 E-value=3.2e-20 Score=152.26 Aligned_cols=85 Identities=36% Similarity=0.540 Sum_probs=75.8
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|.++||+|||+|+.+ +.+|++.++.++|||+.+|+++||++.|||||+.||+++|+.| +|++||++|++|+..|..
T Consensus 448 ~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (542)
T PRK00013 448 APLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEK 527 (542)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4899999999999999 9999886667899999999999999999999999999999999 999999999999998855
Q ss_pred chhhhhccC
Q 034233 78 KHKKYKKKK 86 (100)
Q Consensus 78 ~~~~~~~~~ 86 (100)
.. +.++|+
T Consensus 528 ~~-~~~~~~ 535 (542)
T PRK00013 528 KA-AAPPMG 535 (542)
T ss_pred cC-CCCCCC
Confidence 43 334443
No 5
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.79 E-value=1.3e-19 Score=150.30 Aligned_cols=79 Identities=38% Similarity=0.542 Sum_probs=72.7
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|+++||+|||+|+.+ +.+|++.++.++|||+.+++|+||++.|||||+.||+++|+.| +|++||++|++|+..+..
T Consensus 505 ~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~ 584 (600)
T PLN03167 505 YPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEP 584 (600)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4899999999999999 9999865677899999999999999999999999999999999 999999999999987644
Q ss_pred ch
Q 034233 78 KH 79 (100)
Q Consensus 78 ~~ 79 (100)
++
T Consensus 585 ~~ 586 (600)
T PLN03167 585 EP 586 (600)
T ss_pred CC
Confidence 33
No 6
>PRK14104 chaperonin GroEL; Provisional
Probab=99.78 E-value=3.7e-19 Score=146.09 Aligned_cols=92 Identities=32% Similarity=0.466 Sum_probs=79.6
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|.++||+|||+|+.+ +.+|++.++.++|||+.+++++||++.|||||+.|++++|++| +|++|||+|++|...|+.
T Consensus 449 ~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~ 528 (546)
T PRK14104 449 APARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKK 528 (546)
T ss_pred hhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 4899999999999999 9999876667899999999999999999999999999999999 999999999999988755
Q ss_pred chhhhhccCCCCCCCc
Q 034233 78 KHKKYKKKKKLDDVGI 93 (100)
Q Consensus 78 ~~~~~~~~~~~~~~~~ 93 (100)
... +..|+-|++||.
T Consensus 529 ~~~-~~~~~~~~~~~~ 543 (546)
T PRK14104 529 GGA-GPAMPPGGGMGG 543 (546)
T ss_pred CCC-CCCCCCCCCCCC
Confidence 443 335555555553
No 7
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.76 E-value=8.3e-19 Score=143.85 Aligned_cols=78 Identities=37% Similarity=0.577 Sum_probs=72.2
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|.++||+|||+|+.+ +.+|++.+ .++|||+.+|+++||++.|||||+.||+++|+.| +|++||++|++|+..|..
T Consensus 449 ~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 527 (541)
T PRK12851 449 APVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKK 527 (541)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCC
Confidence 4899999999999999 99998764 4799999999999999999999999999999999 999999999999998755
Q ss_pred ch
Q 034233 78 KH 79 (100)
Q Consensus 78 ~~ 79 (100)
.+
T Consensus 528 ~~ 529 (541)
T PRK12851 528 EP 529 (541)
T ss_pred CC
Confidence 44
No 8
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-18 Score=142.99 Aligned_cols=78 Identities=35% Similarity=0.496 Sum_probs=72.9
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCC-CCeeEeccCCce-echhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDN-PNLGYDATKGEY-VDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP 75 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~-~~~G~d~~~~~~-~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~ 75 (100)
.|.++||+|||+|+.+ +.+||+.++ +++|||+.+++| .||++.|||||++|++++|++| +|+++||+|++|.+.|
T Consensus 436 ~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~ 515 (524)
T COG0459 436 APPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKP 515 (524)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4899999999999999 999999865 569999999999 7899999999999999999999 9999999999999988
Q ss_pred ccc
Q 034233 76 ERK 78 (100)
Q Consensus 76 ~~~ 78 (100)
+.+
T Consensus 516 ~~~ 518 (524)
T COG0459 516 EEK 518 (524)
T ss_pred ccc
Confidence 765
No 9
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.73 E-value=3.1e-18 Score=140.74 Aligned_cols=78 Identities=38% Similarity=0.728 Sum_probs=72.4
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|.++||+|||+|+.+ +++|++.+++++|||+.+|+++||++.|||||+.|++++|++| +|++||++|++|+..|..
T Consensus 464 ~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 464 LPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 4899999999999999 9999874567899999999999999999999999999999999 999999999999987755
Q ss_pred c
Q 034233 78 K 78 (100)
Q Consensus 78 ~ 78 (100)
.
T Consensus 544 ~ 544 (555)
T PTZ00114 544 K 544 (555)
T ss_pred c
Confidence 3
No 10
>CHL00093 groEL chaperonin GroEL
Probab=99.73 E-value=3e-18 Score=140.13 Aligned_cols=75 Identities=29% Similarity=0.484 Sum_probs=70.2
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPE 76 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~ 76 (100)
.|.++||+|||+|+.+ +++|+.. +.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|++.|+
T Consensus 450 ~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 450 APLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999 9999876 45899999999999999999999999999999999 99999999999998763
No 11
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.72 E-value=8.3e-18 Score=137.34 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=69.7
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED 74 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~ 74 (100)
.|.++||+|||+|+.+ +.+|+.. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|+..
T Consensus 447 ~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 526 (533)
T PTZ00212 447 QIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCA 526 (533)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcC
Confidence 3789999999999999 9999853 356799999999999999999999999999999999 999999999999886
Q ss_pred Cc
Q 034233 75 PE 76 (100)
Q Consensus 75 ~~ 76 (100)
|+
T Consensus 527 ~~ 528 (533)
T PTZ00212 527 PR 528 (533)
T ss_pred Cc
Confidence 53
No 12
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.71 E-value=9.3e-18 Score=136.54 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=69.8
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED 74 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~ 74 (100)
.|.++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|+..
T Consensus 435 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 514 (517)
T cd03336 435 QLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCA 514 (517)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcC
Confidence 4889999999999999 9999864 356799999999999999999999999999999999 999999999999886
Q ss_pred C
Q 034233 75 P 75 (100)
Q Consensus 75 ~ 75 (100)
|
T Consensus 515 ~ 515 (517)
T cd03336 515 P 515 (517)
T ss_pred C
Confidence 6
No 13
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.70 E-value=1.2e-17 Score=136.45 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=71.3
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCc--eechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGE--YVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~--~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
+|.++||+|||+|+.+ +.+|+.. ++.++|||+.+++ ++||++.|||||+.||+++|+.| +|++|||+|++|+
T Consensus 439 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (531)
T TIGR02346 439 IIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIM 518 (531)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 4889999999999999 9999764 3557899999999 59999999999999999999999 9999999999999
Q ss_pred cCCccchh
Q 034233 73 EDPERKHK 80 (100)
Q Consensus 73 ~~~~~~~~ 80 (100)
..|....+
T Consensus 519 ~~~~~~~~ 526 (531)
T TIGR02346 519 AKPAGGPK 526 (531)
T ss_pred cCCCCCCC
Confidence 87654443
No 14
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.70 E-value=1.3e-17 Score=136.43 Aligned_cols=76 Identities=21% Similarity=0.210 Sum_probs=69.6
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCC---CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQD---NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED 74 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~---~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~ 74 (100)
+|.++||+|||+|+.+ +.+|++.+ +.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|+..
T Consensus 447 ~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~ 526 (531)
T TIGR02347 447 VIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAG 526 (531)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCc
Confidence 4889999999999999 99998642 35689999999999999999999999999999999 999999999999876
Q ss_pred Cc
Q 034233 75 PE 76 (100)
Q Consensus 75 ~~ 76 (100)
|.
T Consensus 527 ~~ 528 (531)
T TIGR02347 527 RS 528 (531)
T ss_pred cc
Confidence 54
No 15
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.70 E-value=1.6e-17 Score=135.47 Aligned_cols=75 Identities=27% Similarity=0.342 Sum_probs=69.8
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED 74 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~ 74 (100)
.|.++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|+..
T Consensus 436 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 515 (519)
T TIGR02341 436 QLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAA 515 (519)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence 3889999999999999 9999864 345689999999999999999999999999999999 999999999999987
Q ss_pred C
Q 034233 75 P 75 (100)
Q Consensus 75 ~ 75 (100)
|
T Consensus 516 ~ 516 (519)
T TIGR02341 516 P 516 (519)
T ss_pred C
Confidence 7
No 16
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.69 E-value=3.6e-17 Score=131.89 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=67.3
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCC--ceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKG--EYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~--~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
+|.++||+|||+|+.+ +.+|+.. ++.++|||+.+| +++||++.|||||+.||+++|+.| +|++|||+|++|.
T Consensus 391 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 470 (472)
T cd03341 391 VVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIM 470 (472)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceee
Confidence 4889999999999999 9999763 355799999999 999999999999999999999999 9999999999986
Q ss_pred c
Q 034233 73 E 73 (100)
Q Consensus 73 ~ 73 (100)
.
T Consensus 471 ~ 471 (472)
T cd03341 471 A 471 (472)
T ss_pred c
Confidence 4
No 17
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.69 E-value=2.2e-17 Score=133.60 Aligned_cols=73 Identities=25% Similarity=0.197 Sum_probs=67.7
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE 73 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~ 73 (100)
+|.++||+|||+|+.+ +.+|+.. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|+.
T Consensus 404 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~ 482 (484)
T cd03342 404 VIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRA 482 (484)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhc
Confidence 4889999999999999 9999854 356799999999999999999999999999999999 99999999999875
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.69 E-value=2.6e-17 Score=134.05 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=68.3
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCC-----------CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQD-----------NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNK 66 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~-----------~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~ 66 (100)
.|.++||+|||+|+.+ +.+|++.+ +.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||
T Consensus 439 ~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLr 518 (527)
T cd03335 439 VIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILR 518 (527)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999 99998631 34689999999999999999999999999999999 9999999
Q ss_pred ccceeecCC
Q 034233 67 LREGQLEDP 75 (100)
Q Consensus 67 ~d~vV~~~~ 75 (100)
+|.+|+..|
T Consensus 519 ID~ii~~~~ 527 (527)
T cd03335 519 IDDLIKLNP 527 (527)
T ss_pred hcceeecCC
Confidence 999997754
No 19
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.69 E-value=2.1e-17 Score=134.45 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=69.0
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCC----CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQD----NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE 73 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~----~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~ 73 (100)
.|.++||+|||+|+.+ +.+|+..+ +.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|..
T Consensus 442 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 521 (525)
T TIGR02344 442 IIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSG 521 (525)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 3789999999999999 99998642 45699999999999999999999999999999999 99999999999987
Q ss_pred CC
Q 034233 74 DP 75 (100)
Q Consensus 74 ~~ 75 (100)
.|
T Consensus 522 ~~ 523 (525)
T TIGR02344 522 VK 523 (525)
T ss_pred CC
Confidence 65
No 20
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.69 E-value=4.2e-17 Score=132.71 Aligned_cols=73 Identities=25% Similarity=0.314 Sum_probs=67.8
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE 73 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~ 73 (100)
+|.++||+|||+|+.+ +.+|+.. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|.+|+.
T Consensus 438 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 438 VIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 4889999999999999 9999864 356799999999999999999999999999999999 99999999999874
No 21
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.69 E-value=3.1e-17 Score=134.06 Aligned_cols=74 Identities=34% Similarity=0.552 Sum_probs=68.6
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP 75 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~ 75 (100)
.|.++||+|||+|+.+ +++|++. +.++|||+.+|+++||++.|||||+.||+++|++| +|++||++|++|++.|
T Consensus 447 ~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 447 APLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 4899999999999999 9999876 34599999999999999999999999999999999 9999999999997654
No 22
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.68 E-value=3.9e-17 Score=133.05 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=67.8
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE 73 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~ 73 (100)
+|.++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|+.
T Consensus 441 ~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (522)
T TIGR02345 441 IIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMN 519 (522)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence 4889999999999999 9999864 345799999999999999999999999999999999 99999999999976
No 23
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.68 E-value=7.8e-17 Score=131.66 Aligned_cols=71 Identities=42% Similarity=0.679 Sum_probs=67.4
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
.|.++||+|||+|+.+ +++|++.+. ++|||+.+|+++||++.|||||+.|++++|+.| +|++||++|.+|+
T Consensus 446 ~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 446 APLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 3899999999999999 999988755 899999999999999999999999999999999 9999999999986
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.68 E-value=3.6e-17 Score=133.61 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=70.0
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCC-----------CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQD-----------NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNK 66 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~-----------~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~ 66 (100)
+|.++||+|||+|+.+ +.+|++.+ +.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||
T Consensus 443 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ 522 (536)
T TIGR02340 443 IIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILR 522 (536)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999 99997631 23689999999999999999999999999999999 9999999
Q ss_pred ccceeecCCccc
Q 034233 67 LREGQLEDPERK 78 (100)
Q Consensus 67 ~d~vV~~~~~~~ 78 (100)
+|.+|+..|+++
T Consensus 523 ID~ii~~~~~~~ 534 (536)
T TIGR02340 523 IDDLIKLNPEQS 534 (536)
T ss_pred hhhhhhcCCCCC
Confidence 999998876443
No 25
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.68 E-value=4.7e-17 Score=132.02 Aligned_cols=72 Identities=25% Similarity=0.355 Sum_probs=67.0
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
+|.++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|.+|+
T Consensus 437 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~ 514 (515)
T cd03338 437 VIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVL 514 (515)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 4889999999999999 9999864 356799999999999999999999999999999999 9999999999986
No 26
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.68 E-value=5.3e-17 Score=131.66 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=67.2
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE 73 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~ 73 (100)
.|.++||+|||+|+.+ +.+|+.. ++.++|||+.+|++.||++.|||||+.||+++|+.| +|++|||+|++|+.
T Consensus 438 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 438 EIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 4889999999999999 9999843 346799999999999999999999999999999999 99999999999864
No 27
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.67 E-value=8.5e-17 Score=130.85 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=68.0
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CC-CCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DN-PNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE 73 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~-~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~ 73 (100)
.|.++||+|||+|+.+ +.+|++. ++ .++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|.+|+.
T Consensus 440 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~ 519 (522)
T cd03340 440 IIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKN 519 (522)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeC
Confidence 3789999999999999 9999874 23 5699999999999999999999999999999999 99999999999976
Q ss_pred C
Q 034233 74 D 74 (100)
Q Consensus 74 ~ 74 (100)
.
T Consensus 520 ~ 520 (522)
T cd03340 520 P 520 (522)
T ss_pred C
Confidence 3
No 28
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.67 E-value=1.1e-16 Score=130.41 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=65.8
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC----CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ----DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~----~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
.|.++||+|||+|+.+ +.+|+.. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|.+|.
T Consensus 448 ~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 448 SIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 3889999999999999 9999843 245699999999999999999999999999999999 9999999999874
No 29
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.65 E-value=1.2e-16 Score=129.91 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=66.4
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
.|.++||+|||+|+.+ +.+|+.. ++.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|+
T Consensus 441 ~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 441 EIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 3789999999999999 9999853 346799999999999999999999999999999999 9999999999875
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.65 E-value=1.2e-16 Score=129.05 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=66.5
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC---C-CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ---D-NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~---~-~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
.|.++||+|||+|+.+ +.+|++. + +.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|+
T Consensus 401 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 401 VIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 3789999999999999 9999864 2 45699999999999999999999999999999999 9999999999885
No 31
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.62 E-value=4.8e-16 Score=124.42 Aligned_cols=72 Identities=31% Similarity=0.410 Sum_probs=66.2
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCC---CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQD---NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~---~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
.|.++|++|||+|+.+ +.+|+..+ ..++|+|..++++.||++.|||||+.||+++|+.| +|++|||+|.+|+
T Consensus 387 ~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 387 VIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 4789999999999999 99998653 34689999999999999999999999999999999 9999999999874
No 32
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.5e-16 Score=127.32 Aligned_cols=75 Identities=45% Similarity=0.727 Sum_probs=71.4
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.|+++|++|||+|+.. ++|++ . ..+|||+.+++|+||++.||+||++|.+++|..| +|+++++++++|.+.|++
T Consensus 464 ~P~~~IakNAGvdg~~vv~Kv~-~--~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~ 540 (550)
T KOG0356|consen 464 LPAQTIAKNAGVDGSVVVEKVL-N--DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKE 540 (550)
T ss_pred hhHHHHHHhcCCchHHHHHHHH-h--hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEecccc
Confidence 4999999999999999 99998 3 3899999999999999999999999999999999 999999999999999987
Q ss_pred c
Q 034233 78 K 78 (100)
Q Consensus 78 ~ 78 (100)
+
T Consensus 541 ~ 541 (550)
T KOG0356|consen 541 E 541 (550)
T ss_pred c
Confidence 7
No 33
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.61 E-value=6.2e-16 Score=126.45 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=66.2
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC----CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ----DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~----~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
.|.++||+|||+|+.+ +.+|++. .+.++|||+.+|+++||++.|||||+.||+++|+.| +|++|||+|++|.
T Consensus 452 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 452 EIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVIS 530 (532)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 4889999999999999 9999853 245689999999999999999999999999999999 9999999999985
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.60 E-value=2e-15 Score=119.71 Aligned_cols=74 Identities=31% Similarity=0.439 Sum_probs=69.3
Q ss_pred hHHHHHhhcCCChHH-HHHHHc--CCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233 2 PVYTIAATAEVEGSV-VGKLLG--QDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP 75 (100)
Q Consensus 2 P~~~La~NAG~d~~~-v~kL~~--~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~ 75 (100)
|.++|++|||+|+.+ +++|+. ..+.++|||..+++++||.+.|||||+.|++++++.| +|++|||+|.+|+.+|
T Consensus 407 ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 407 IPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred hhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999 999987 3456899999999999999999999999999999999 9999999999998865
No 35
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.8e-15 Score=116.88 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=71.2
Q ss_pred HHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCc
Q 034233 3 VYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPE 76 (100)
Q Consensus 3 ~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~ 76 (100)
-||||+|||+|... +++||.+ +..++|+|..+..+.|+++.+||+|..||++++..| +|++||++|..|++.+.
T Consensus 446 PrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S 525 (543)
T KOG0361|consen 446 PRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKS 525 (543)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcc
Confidence 38999999999999 9999865 578899999999999999999999999999999999 99999999999998776
Q ss_pred cch
Q 034233 77 RKH 79 (100)
Q Consensus 77 ~~~ 79 (100)
+.+
T Consensus 526 ~~~ 528 (543)
T KOG0361|consen 526 QSA 528 (543)
T ss_pred cCC
Confidence 655
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.6e-14 Score=115.20 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=71.3
Q ss_pred HHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 4 YTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 4 ~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
.+||.|||||+.+ +.+||+. ++.++|+|+++|++.||.++||+|+++||++.+.+| +|-+|||+|.||.+.|..
T Consensus 443 tiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~ 522 (527)
T KOG0363|consen 443 TIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRE 522 (527)
T ss_pred hhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcc
Confidence 5789999999999 9999976 578999999999999999999999999999999999 999999999999999876
Q ss_pred ch
Q 034233 78 KH 79 (100)
Q Consensus 78 ~~ 79 (100)
..
T Consensus 523 r~ 524 (527)
T KOG0363|consen 523 RE 524 (527)
T ss_pred cc
Confidence 54
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.3e-12 Score=100.11 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=65.7
Q ss_pred HHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233 4 YTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE 73 (100)
Q Consensus 4 ~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~ 73 (100)
++||+|||++|.. +.+||.+ ++.+.|+|+++|.+.||++..|+.|++|..+++..| .+.+||++|+++..
T Consensus 458 ~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 458 YTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred HhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 6899999999999 9999975 568899999999999999999999999999999999 99999999999753
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.9e-11 Score=95.85 Aligned_cols=85 Identities=25% Similarity=0.244 Sum_probs=72.9
Q ss_pred HHHHhhcCCChHH-HHHHHcCC--CCCeeEeccCC-ceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233 4 YTIAATAEVEGSV-VGKLLGQD--NPNLGYDATKG-EYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER 77 (100)
Q Consensus 4 ~~La~NAG~d~~~-v~kL~~~~--~~~~G~d~~~~-~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~ 77 (100)
++||+|||++..+ +.+|..-+ +.++|+|.... ...|+.+.||||-+.+|+++|+.| +|+++|++|.||+.++..
T Consensus 445 ktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~ag 524 (537)
T KOG0362|consen 445 KTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAG 524 (537)
T ss_pred HhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccC
Confidence 7899999999999 99997652 45678888766 589999999999999999999999 999999999999999988
Q ss_pred chhhhhccCCCC
Q 034233 78 KHKKYKKKKKLD 89 (100)
Q Consensus 78 ~~~~~~~~~~~~ 89 (100)
.++.+ +...+|
T Consensus 525 gp~~~-~~~~~d 535 (537)
T KOG0362|consen 525 GPKPP-GKKPDD 535 (537)
T ss_pred CCCCC-CCCCCC
Confidence 88654 444444
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.9e-10 Score=93.19 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=68.0
Q ss_pred hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233 2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP 75 (100)
Q Consensus 2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~ 75 (100)
| ++|++|+|.++.. +..|++. +...+|+|..++.++||.+.++|+|..||.+..++| .++++||+|+++....
T Consensus 444 P-rtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~k 522 (527)
T KOG0364|consen 444 P-RTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKK 522 (527)
T ss_pred c-HHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeee
Confidence 5 8999999999999 9988875 347789999999999999999999999999999999 9999999999998765
Q ss_pred cc
Q 034233 76 ER 77 (100)
Q Consensus 76 ~~ 77 (100)
+.
T Consensus 523 k~ 524 (527)
T KOG0364|consen 523 KR 524 (527)
T ss_pred ec
Confidence 43
No 40
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3e-10 Score=89.70 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=65.7
Q ss_pred HHHHhhcCCChHH-HHHHHcC----CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233 4 YTIAATAEVEGSV-VGKLLGQ----DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED 74 (100)
Q Consensus 4 ~~La~NAG~d~~~-v~kL~~~----~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~ 74 (100)
..||+|+|++|.+ ++.|+++ .++++|+|+....--||.+.+|+|++.-|++++..| ++.|+|++|+|+...
T Consensus 319 malaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~ 396 (400)
T KOG0357|consen 319 MALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPG 396 (400)
T ss_pred hhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCC
Confidence 4699999999999 9999875 589999999999999999999999999999999999 999999999998653
No 41
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.6e-07 Score=75.71 Aligned_cols=78 Identities=22% Similarity=0.156 Sum_probs=69.5
Q ss_pred HHHHHhhcCCChHH-HHHHHcC-----------CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcccc
Q 034233 3 VYTIAATAEVEGSV-VGKLLGQ-----------DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLR 68 (100)
Q Consensus 3 ~~~La~NAG~d~~~-v~kL~~~-----------~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d 68 (100)
.++|+-||+.|+.+ +.++|.- .-.++|+|..+|++.|.++.|+++|..++...|+.| +|.++||+|
T Consensus 451 pktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD 530 (545)
T KOG0360|consen 451 PKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRID 530 (545)
T ss_pred hHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchh
Confidence 47899999999999 9999863 124689999999999999999999999999999999 999999999
Q ss_pred ceeecCCccchh
Q 034233 69 EGQLEDPERKHK 80 (100)
Q Consensus 69 ~vV~~~~~~~~~ 80 (100)
+++.-.|+.+.+
T Consensus 531 ~li~l~~~~~~~ 542 (545)
T KOG0360|consen 531 DLIKLLPELQVA 542 (545)
T ss_pred hhhhcCcccccc
Confidence 999887776653
No 42
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.2e-06 Score=68.96 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=62.4
Q ss_pred HHHHHhhcCCChHH-HHHHHcCC-CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233 3 VYTIAATAEVEGSV-VGKLLGQD-NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE 73 (100)
Q Consensus 3 ~~~La~NAG~d~~~-v~kL~~~~-~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~ 73 (100)
.++|++|+|+|.-+ +.+|...+ ....|+|..+|+-.+-...||||-+.|+++.|.++ +|+.+|-+|.|+..
T Consensus 440 pk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 440 PKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred hHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 47899999999999 88886552 23469999999999999999999999999999999 99999999998754
No 43
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=31.94 E-value=27 Score=22.97 Aligned_cols=10 Identities=0% Similarity=0.019 Sum_probs=7.9
Q ss_pred HHHHHhhcCC
Q 034233 3 VYTIAATAEV 12 (100)
Q Consensus 3 ~~~La~NAG~ 12 (100)
|+||++|||-
T Consensus 23 L~qLsdNCGG 32 (90)
T PF11608_consen 23 LRQLSDNCGG 32 (90)
T ss_dssp HHHHHHTTT-
T ss_pred HHHHhhccCC
Confidence 6889999985
No 44
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=28.76 E-value=19 Score=18.93 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.4
Q ss_pred CCCCccCCCcCC
Q 034233 89 DDVGIIQGKPII 100 (100)
Q Consensus 89 ~~~~~~~~~~~~ 100 (100)
..||..||+|++
T Consensus 7 ~v~G~rPg~pfl 18 (29)
T PF10632_consen 7 RVFGARPGSPFL 18 (29)
T ss_pred cEEcccCCCcEE
Confidence 468999999863
No 45
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=27.06 E-value=72 Score=17.46 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=14.7
Q ss_pred ChHHHHHhhcCCChHH-HHHHH
Q 034233 1 MPVYTIAATAEVEGSV-VGKLL 21 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~ 21 (100)
.|+..||+..|++... ..+++
T Consensus 18 ~s~~~la~~lglS~~~v~~Ri~ 39 (42)
T PF13404_consen 18 RSYAELAEELGLSESTVRRRIR 39 (42)
T ss_dssp S-HHHHHHHHTS-HHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH
Confidence 4788999999999887 66554
No 46
>PF10547 P22_AR_N: P22_AR N-terminal domain; InterPro: IPR018875 The antirepressor protein, ANT, prevents the prophage p22 c2 repressor protein from binding to its operators; it also inhibits the action of other prophage repressor proteins, including those of phages lambda and 434. The synthesis of antirepressor is negatively regulated by the protein products of the two other immi genes, mnt and arc.
Probab=25.52 E-value=87 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=19.6
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ 23 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~ 23 (100)
.|++-|+++-|+|-.- ..||++.
T Consensus 24 v~mkpI~e~lGLdw~~Q~~KL~~~ 47 (120)
T PF10547_consen 24 VAMKPICEGLGLDWKSQRRKLKRD 47 (120)
T ss_pred EEhHHHHHHcCCCHHHHHHHHhcc
Confidence 3789999999999887 9999654
No 47
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=25.12 E-value=81 Score=20.58 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=33.6
Q ss_pred HHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH
Q 034233 4 YTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA 59 (100)
Q Consensus 4 ~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A 59 (100)
..|..|.++.--. +++|.. .+|+|- ++-.+...||||...-.+++..+
T Consensus 32 ~~L~~s~~frNP~i~ekLi~----~~~Ide----~gTn~p~~i~dP~~~~~~~y~e~ 80 (96)
T PF07818_consen 32 DRLQNSKSFRNPSILEKLIE----FFGIDE----YGTNFPKDIFDPHGFPEEDYYEE 80 (96)
T ss_pred HHHHHccccCChHHHHHHHH----HcCCCc----ccCCCChhhcCCCCCCHHHHHHH
Confidence 4566666665333 666643 367763 77788888999999888888766
No 48
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=21.74 E-value=86 Score=19.11 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.7
Q ss_pred HHHHhhcCCChHH-HHHHHcC
Q 034233 4 YTIAATAEVEGSV-VGKLLGQ 23 (100)
Q Consensus 4 ~~La~NAG~d~~~-v~kL~~~ 23 (100)
+....-|++||.+ +++|+.+
T Consensus 25 ya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 25 YAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHhCCCHHHHHHHHHhc
Confidence 3445678999999 9999876
Done!