Query 034233
Match_columns 100
No_of_seqs 109 out of 1041
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 19:15:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034233.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034233hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sjpa1 a.129.1.1 (A:62-134,A: 99.8 6.6E-21 4.8E-25 134.5 6.1 67 1-68 111-180 (180)
2 d1a6db1 a.129.1.2 (B:20-144,B: 99.7 1.2E-18 8.5E-23 127.8 6.6 71 2-72 167-243 (243)
3 d1ioka1 a.129.1.1 (A:2-136,A:4 99.7 1E-17 7.5E-22 122.6 7.0 75 1-75 175-252 (252)
4 d1we3a1 a.129.1.1 (A:3-138,A:4 99.7 5.9E-17 4.3E-21 118.0 7.8 75 1-75 177-255 (255)
5 d1a6da1 a.129.1.2 (A:17-145,A: 99.6 2.7E-16 1.9E-20 114.8 6.5 70 2-71 170-245 (245)
6 d1kp8a1 a.129.1.1 (A:2-136,A:4 99.6 1.1E-15 8E-20 111.7 7.2 75 1-76 175-252 (252)
7 d1q3qa1 a.129.1.2 (A:9-145,A:4 99.5 5.2E-14 3.8E-18 103.1 7.0 73 2-74 179-257 (258)
8 d2cfxa1 a.4.5.32 (A:1-63) Tran 21.4 51 0.0037 17.1 3.3 21 1-21 20-41 (63)
9 d1v54i_ f.23.3.1 (I:) Mitochon 17.4 11 0.0008 21.5 -0.3 20 29-49 53-72 (73)
10 d2o3fa1 a.4.1.20 (A:1-83) Puta 16.1 27 0.002 19.5 1.3 19 2-20 38-56 (83)
No 1
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=99.81 E-value=6.6e-21 Score=134.55 Aligned_cols=67 Identities=28% Similarity=0.421 Sum_probs=62.7
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcccc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLR 68 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d 68 (100)
+|++||++|||+|+.. +++++.. +.++|||+.+++|+||++.|||||++|+++||++| +|++|||+|
T Consensus 111 ~p~~~I~~NaG~~~~~v~~~~~~~-~~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL~~A~s~a~~~ltte 180 (180)
T d1sjpa1 111 APLKQIAFNSGLEPGVVAEKVRNL-PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE 180 (180)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHTS-CTTEECCTTTCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCCCchhhhhhhhcc-ccccCccccccccccHHHcCCcCcHHHHHHHHHhHHHHHHHHHhCC
Confidence 4999999999999999 9998765 67899999999999999999999999999999999 999999986
No 2
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Probab=99.74 E-value=1.2e-18 Score=127.78 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=66.6
Q ss_pred hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233 2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL 72 (100)
Q Consensus 2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~ 72 (100)
|.++||+|||+|+.+ +.+||.. ++.++|||+.+|++.||++.|||||+.|++++|+.| +|++|||+|++|+
T Consensus 167 ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis 243 (243)
T d1a6db1 167 IPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA 243 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred cCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 679999999999999 9999864 578899999999999999999999999999999999 9999999999974
No 3
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}
Probab=99.70 E-value=1e-17 Score=122.56 Aligned_cols=75 Identities=33% Similarity=0.542 Sum_probs=71.4
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP 75 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~ 75 (100)
+|++++++|+|.|+.. +++.+...+..+|||+.+++|+||++.||+||++|++++|++| +|++||++|++|++.|
T Consensus 175 ~p~~~i~~naG~dg~~vv~~~~~~~~~~~g~~~~~~~~g~~~~~GiidP~kVt~~al~~A~sva~~lltte~~i~~~p 252 (252)
T d1ioka1 175 APMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 252 (252)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred HHHHHHHhccCCCcceEEEeecccCcCCEEEEceeeeEeeeecccccCcHHHHHHHHHHHHhhhhHHHhhceeeecCC
Confidence 4899999999999999 9999887778999999999999999999999999999999999 9999999999999876
No 4
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}
Probab=99.67 E-value=5.9e-17 Score=117.97 Aligned_cols=75 Identities=37% Similarity=0.635 Sum_probs=68.9
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcC-CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQ-DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP 75 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~-~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~ 75 (100)
+|.++|++|+|+++.+ +.++... .+.++|||+.+|++.||++.||+||+.|+++++++| ++++||++|++|++.|
T Consensus 177 ~~~~~~~~nag~~~~~~~~~~~~~~~~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~~A~~~a~~iL~~d~~I~~~p 255 (255)
T d1we3a1 177 EPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP 255 (255)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECS
T ss_pred hhHHHHHhhcccccceeeeeeeecccCCceeEEeeccEEeehhhcCCcCchHhhHHHHHHHHHHhchHhhcchhhhcCC
Confidence 3889999999999998 7776554 467899999999999999999999999999999999 9999999999999876
No 5
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}
Probab=99.62 E-value=2.7e-16 Score=114.75 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=65.5
Q ss_pred hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcccccee
Q 034233 2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQ 71 (100)
Q Consensus 2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV 71 (100)
+.++|++|+|+|+.+ +.+++.. .+.++|+|..++.+.||++.|||||+.||+++|++| +|++|||+|++|
T Consensus 170 ip~~laeNaG~D~i~iv~~l~~~~~~~~~~~Gv~~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii 245 (245)
T d1a6da1 170 IPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred hhhhhhccCCCCchhhhhhhhcccccCCceeeEEccCCeEeehHhcCccccHHHHHHHHHHHHHHHHHHHhhceeC
Confidence 568999999999999 9999864 467899999999999999999999999999999999 999999999986
No 6
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}
Probab=99.59 E-value=1.1e-15 Score=111.71 Aligned_cols=75 Identities=31% Similarity=0.412 Sum_probs=70.1
Q ss_pred ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCc
Q 034233 1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPE 76 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~ 76 (100)
+|+++++.|+|.++.. +.+++.. ++++|||..++.|+||++.|++||++|+++++++| +++++|++|+.|++.|+
T Consensus 175 ~p~~~i~~nag~~g~~~~~~v~~~-~~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~~~~~~iL~te~~i~~~pe 252 (252)
T d1kp8a1 175 APLRQIVLNCGEEPSVVANTVKGG-DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK 252 (252)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHS-CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC
T ss_pred HHHHHHHHhhhhcccccceeeeec-CCCeeEEEEEEEEEEEEeeccCCcceeccHhhhhheeccceeEeecccccCCCC
Confidence 4899999999999999 8888665 67899999999999999999999999999999999 99999999999999874
No 7
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Probab=99.45 E-value=5.2e-14 Score=103.05 Aligned_cols=73 Identities=19% Similarity=0.393 Sum_probs=67.2
Q ss_pred hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233 2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED 74 (100)
Q Consensus 2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~ 74 (100)
+.++|++|+|+|+.+ +.+++.. ++.++|+|+.+|.+.||++.|||||+.|+.++++.| ++++||++|.+|+.+
T Consensus 179 Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A~e~a~~IL~iD~iI~ak 257 (258)
T d1q3qa1 179 IPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK 257 (258)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred hhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECCEEeEchHcCccccHHHHHHHHHHHHHHhCcceeEccEEeeC
Confidence 457899999999999 9999753 467899999999999999999999999999999999 999999999999864
No 8
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=21.39 E-value=51 Score=17.09 Aligned_cols=21 Identities=0% Similarity=0.120 Sum_probs=15.0
Q ss_pred ChHHHHHhhcCCChHH-HHHHH
Q 034233 1 MPVYTIAATAEVEGSV-VGKLL 21 (100)
Q Consensus 1 ~P~~~La~NAG~d~~~-v~kL~ 21 (100)
.|+..||+..|+.... -.+++
T Consensus 20 ~s~~~iA~~lgis~~tv~~Ri~ 41 (63)
T d2cfxa1 20 LSMRELGRKIKLSPPSVTERVR 41 (63)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 3678899999998775 44443
No 9
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.38 E-value=11 Score=21.48 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=16.0
Q ss_pred eEeccCCceechhhCCcccCh
Q 034233 29 GYDATKGEYVDLIKEGILDPL 49 (100)
Q Consensus 29 G~d~~~~~~~Dm~~~GIiDP~ 49 (100)
-||++ .+|+.|.++||+++.
T Consensus 53 nYDa~-KdFe~Mr~aGvFqS~ 72 (73)
T d1v54i_ 53 NYDSM-KDFEEMRKAGIFQSA 72 (73)
T ss_dssp TCCHH-HHHHHHHHTTCCSSC
T ss_pred ccchh-hhHHHHHHccccccC
Confidence 36764 489999999999875
No 10
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=16.13 E-value=27 Score=19.47 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=14.8
Q ss_pred hHHHHHhhcCCChHHHHHH
Q 034233 2 PVYTIAATAEVEGSVVGKL 20 (100)
Q Consensus 2 P~~~La~NAG~d~~~v~kL 20 (100)
.++.||+.+|..+..|.++
T Consensus 38 si~~lA~~~~vS~sTi~Rf 56 (83)
T d2o3fa1 38 TVNEISALANSSDAAVIRL 56 (83)
T ss_dssp CHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHH
Confidence 5788999999998874444
Done!