Query 034235
Match_columns 100
No_of_seqs 114 out of 735
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n91_A ORF, hypothetical prote 99.9 1E-23 3.6E-28 145.6 7.7 68 29-97 5-72 (108)
2 1jrm_A MTH0637, conserved hypo 99.8 3.5E-21 1.2E-25 131.9 5.1 65 29-97 4-70 (104)
3 3fwu_A Macrophage migration in 81.0 6.7 0.00023 26.3 6.8 57 41-98 58-119 (133)
4 3djh_A Macrophage migration in 81.0 4.4 0.00015 26.1 5.7 57 41-98 36-97 (114)
5 3kan_A D-dopachrome tautomeras 79.9 5.3 0.00018 26.0 5.9 57 41-98 36-98 (117)
6 3fwt_A Macrophage migration in 78.6 4.3 0.00015 27.3 5.2 57 41-98 58-119 (133)
7 3b64_A Macrophage migration in 77.7 6.8 0.00023 24.8 5.7 56 43-99 39-99 (112)
8 1t6a_A Rbstp2229 gene product; 75.2 2.8 9.6E-05 29.2 3.5 31 58-89 75-110 (126)
9 4dh4_A MIF; trimer, isomerase; 71.3 17 0.00058 23.1 6.5 57 41-98 37-98 (114)
10 3abf_A 4-oxalocrotonate tautom 71.1 3.8 0.00013 23.1 2.9 23 77-99 21-43 (64)
11 2xcz_A Possible ATLS1-like lig 68.5 13 0.00044 23.5 5.4 55 44-99 40-99 (115)
12 2wkb_A Macrophage migration in 68.1 17 0.00058 23.6 6.0 55 44-99 40-99 (125)
13 2opa_A Probable tautomerase YW 67.9 4.1 0.00014 22.7 2.6 22 78-99 21-42 (61)
14 3t5s_A Gilaa.00834.A, macropha 67.7 15 0.00053 24.6 5.9 44 55-98 71-119 (135)
15 2os5_A Acemif; macrophage migr 66.0 15 0.00052 23.5 5.4 55 44-99 40-99 (119)
16 1otf_A 4-oxalocrotonate tautom 65.8 4.7 0.00016 22.5 2.5 23 77-99 20-42 (62)
17 1uiz_A MIF, macrophage migrati 63.7 14 0.00047 23.4 4.8 43 57-99 52-99 (115)
18 2x4k_A 4-oxalocrotonate tautom 62.3 6.1 0.00021 21.8 2.6 22 77-98 23-44 (63)
19 3m20_A 4-oxalocrotonate tautom 59.8 7.8 0.00027 22.2 2.8 22 78-99 20-41 (62)
20 3m21_A Probable tautomerase HP 58.0 7.7 0.00026 22.5 2.6 23 77-99 23-45 (67)
21 1gyx_A YDCE, B1461, hypothetic 56.3 8.2 0.00028 23.0 2.5 23 77-99 21-43 (76)
22 4hti_A Receptor-type tyrosine- 56.1 16 0.00056 24.2 4.1 36 60-95 9-44 (99)
23 1hfo_A Migration inhibitory fa 56.1 9 0.00031 24.2 2.8 41 59-99 53-98 (113)
24 3mb2_A 4-oxalocrotonate tautom 54.3 11 0.00036 22.2 2.8 23 77-99 21-43 (72)
25 3ry0_A Putative tautomerase; o 51.1 12 0.0004 21.4 2.6 22 77-98 20-41 (65)
26 1mww_A Hypothetical protein HI 48.3 14 0.00047 23.9 2.8 42 58-99 55-101 (128)
27 3ej9_A Alpha-subunit of trans- 46.4 15 0.0005 22.1 2.6 23 77-99 21-43 (76)
28 2aal_A Malonate semialdehyde d 44.9 17 0.00057 23.7 2.8 60 39-99 38-107 (131)
29 1u2c_A Dystroglycan; IG-like d 43.4 1.1E+02 0.0036 23.3 7.8 24 74-97 145-168 (246)
30 3hrd_B Nicotinate dehydrogenas 39.8 42 0.0014 25.7 4.8 39 60-98 33-71 (330)
31 3m1y_A Phosphoserine phosphata 38.5 65 0.0022 20.8 5.0 37 61-97 127-163 (217)
32 2jvf_A De novo protein M7; tet 36.2 16 0.00056 23.6 1.6 50 39-88 18-73 (96)
33 3fwu_A Macrophage migration in 34.6 55 0.0019 21.7 4.2 39 61-99 22-63 (133)
34 3dah_A Ribose-phosphate pyroph 34.3 24 0.00082 27.2 2.6 28 73-100 12-39 (319)
35 3qor_A Nuclear migration prote 34.2 89 0.003 20.2 5.1 44 26-69 14-60 (121)
36 3s5j_B Ribose-phosphate pyroph 34.0 19 0.00063 28.0 1.9 27 74-100 9-35 (326)
37 1dku_A Protein (phosphoribosyl 32.6 27 0.00091 26.7 2.6 28 73-100 14-41 (317)
38 3n4h_A Putative tautomerase; C 32.1 34 0.0012 22.6 2.8 39 61-99 61-104 (148)
39 1szw_A TRNA pseudouridine synt 31.6 28 0.00094 27.7 2.6 37 59-98 62-98 (379)
40 2l9f_A CALE8, meacp; transfera 30.9 37 0.0013 22.4 2.8 28 69-96 8-35 (102)
41 1z2z_A Probable tRNA pseudouri 30.7 25 0.00085 28.1 2.2 37 59-98 46-82 (446)
42 1wh0_A Ubiquitin carboxyl-term 29.8 1E+02 0.0035 20.6 5.0 33 38-70 30-62 (134)
43 2l25_A Uncharacterized protein 29.1 1.3E+02 0.0045 20.2 5.9 59 38-96 40-107 (141)
44 1rm6_A 4-hydroxybenzoyl-COA re 24.3 97 0.0033 26.4 4.8 40 59-98 468-507 (769)
45 3mlc_A FG41 malonate semialdeh 24.2 53 0.0018 21.8 2.6 40 59-99 62-106 (136)
46 1kwa_A Hcask/LIN-2 protein; PD 24.1 58 0.002 19.4 2.6 49 38-87 25-73 (88)
47 2ayh_A 1,3-1,4-beta-D-glucan 4 24.1 97 0.0033 21.5 4.1 46 29-74 36-86 (214)
48 3gla_A Low molecular weight he 23.7 1.3E+02 0.0044 18.2 4.8 34 38-72 14-48 (100)
49 1n62_B Carbon monoxide dehydro 23.5 97 0.0033 26.6 4.7 40 59-98 515-554 (809)
50 4eld_A MJ16.5-P1, small heat s 23.3 1.2E+02 0.0041 20.3 4.4 39 31-71 60-99 (161)
51 1t3q_B Quinoline 2-oxidoreduct 23.0 1E+02 0.0035 26.3 4.7 40 59-98 493-532 (788)
52 2l3v_A ACP, acyl carrier prote 22.9 50 0.0017 18.8 2.1 20 77-96 6-25 (79)
53 2kvr_A Ubiquitin carboxyl-term 22.4 62 0.0021 21.7 2.7 24 76-99 67-90 (130)
54 1ffv_B CUTL, molybdoprotein of 22.4 1.1E+02 0.0036 26.3 4.7 40 59-98 509-548 (803)
55 1wfi_A Nuclear distribution ge 21.9 1.7E+02 0.0058 18.9 4.8 33 37-69 16-51 (131)
56 3i9v_2 NADH-quinone oxidoreduc 21.6 24 0.00083 25.0 0.5 19 77-95 42-60 (181)
57 2w3s_B Xanthine dehydrogenase; 21.4 1.1E+02 0.0037 26.2 4.5 40 59-98 475-514 (777)
58 2kxo_A Cell division topologic 21.4 86 0.0029 20.2 3.1 25 75-99 42-66 (95)
59 1rl1_A Suppressor of G2 allele 21.3 1.5E+02 0.005 18.4 4.3 31 39-70 20-51 (114)
60 2kl8_A OR15; structural genomi 20.6 1.1E+02 0.0038 19.2 3.4 33 58-92 37-72 (85)
61 3hrd_A Nicotinate dehydrogenas 20.4 97 0.0033 24.4 3.9 39 55-98 192-231 (425)
62 2qnw_A Acyl carrier protein; m 20.2 50 0.0017 19.2 1.7 22 75-96 7-28 (82)
63 1iv3_A 2-C-methyl-D-erythritol 20.0 1.1E+02 0.0039 21.5 3.8 32 67-98 99-130 (152)
64 3nvz_C Xanthine dehydrogenase/ 20.0 1.1E+02 0.0037 26.1 4.3 40 59-98 455-494 (755)
65 2pmp_A 2-C-methyl-D-erythritol 20.0 1.1E+02 0.0039 21.7 3.8 32 67-98 102-133 (160)
66 2cnr_A FAS, ACP, acyl carrier 20.0 60 0.0021 18.5 2.0 20 77-96 9-28 (82)
No 1
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=99.89 E-value=1e-23 Score=145.55 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=64.9
Q ss_pred CcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235 29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE 97 (100)
Q Consensus 29 P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~ 97 (100)
++||++.++ +++|+|+|+|+|++++|.++++++|+|+|+|||+||+||++|++|||+.||||+|+|+.
T Consensus 5 m~~~~~~~~-~v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V~ks~V~I 72 (108)
T 1n91_A 5 MSAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVI 72 (108)
T ss_dssp CCSEEECSS-EEEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEE
T ss_pred cceEEECCC-eEEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCccceEEE
Confidence 468999876 89999999999999999999999999999999999999999999999999999999986
No 2
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=99.83 E-value=3.5e-21 Score=131.90 Aligned_cols=65 Identities=22% Similarity=0.396 Sum_probs=61.0
Q ss_pred CcceEeeCCCeEEEEEEEecCCCcccccccc--CCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235 29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE 97 (100)
Q Consensus 29 P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~--~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~ 97 (100)
++||++.++ +++|+|+|+|+|++++|.+++ +++|+|+|+|||+||+||++|++|||+.|| |+|+.
T Consensus 4 m~~~~~~~~-~~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~l~---s~V~i 70 (104)
T 1jrm_A 4 MDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEI 70 (104)
T ss_dssp CCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEE
T ss_pred chhEEECCC-cEEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEE
Confidence 579999887 799999999999999999966 999999999999999999999999999999 88875
No 3
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=81.03 E-value=6.7 Score=26.32 Aligned_cols=57 Identities=7% Similarity=0.074 Sum_probs=38.0
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCCCcC-hhH----HHHHHHHHhhcCCCCCceEee
Q 034235 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDG-EAN----AALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dG-kAN----~aLi~~LAk~LgV~ks~I~~~ 98 (100)
++-|.+.|+..- -+.|-.+.+..+.|+.-..-+ ..| ++|.++|.+.|||++.+|-..
T Consensus 58 ~vmV~~~~~~~m-~fgGs~dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~ 119 (133)
T 3fwu_A 58 LVMMTFHDSTPM-HFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVL 119 (133)
T ss_dssp GCEEEEECSCCC-CBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEECCceE-EECCcCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 355666675433 244555678888888654333 334 567888888999999998654
No 4
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=80.99 E-value=4.4 Score=26.09 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=36.2
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCCCcC-hh----HHHHHHHHHhhcCCCCCceEee
Q 034235 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDG-EA----NAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dG-kA----N~aLi~~LAk~LgV~ks~I~~~ 98 (100)
+|.|.+.|+..- .+.|-.+.+..+.|+....-+ .. -++|.++|.+.|||++.+|-..
T Consensus 36 ~vmV~~~~~~~m-~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI~ 97 (114)
T 3djh_A 36 YIAVHVVPDQLM-AFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYIN 97 (114)
T ss_dssp GCEEEEECSCEE-EETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred HeEEEEeCCceE-EEcCcCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEE
Confidence 455566665532 244444566666666654433 23 3678888999999999998654
No 5
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=79.92 E-value=5.3 Score=26.04 Aligned_cols=57 Identities=9% Similarity=0.272 Sum_probs=35.8
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCCCc------ChhHHHHHHHHHhhcCCCCCceEee
Q 034235 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKD------GEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~d------GkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
+|-|.+.|+..- .+.|-.+.+..+.|+....- .+-.++|.++|.+.|||++++|-..
T Consensus 36 ~vmV~v~~~~~m-~fgGs~~P~a~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~ 98 (117)
T 3kan_A 36 RVNVTVRPGLAM-ALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIR 98 (117)
T ss_dssp GCEEEEECSCCC-CBTTBCSSCEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred HEEEEEeCCCeE-EECCCCCceEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEE
Confidence 455777776543 24444455555555554333 2334678889999999999998654
No 6
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=78.62 E-value=4.3 Score=27.26 Aligned_cols=57 Identities=5% Similarity=-0.036 Sum_probs=36.0
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCC-CcChhH----HHHHHHHHhhcCCCCCceEee
Q 034235 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~dGkAN----~aLi~~LAk~LgV~ks~I~~~ 98 (100)
++-|.+.|+..- -+.|-.+.+..+.|+... ...+.| ++|.++|.+.|||++.+|-..
T Consensus 58 ~v~V~~~~~~~m-~fgGs~dP~a~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~rvyI~ 119 (133)
T 3fwt_A 58 FVMTAFSDKTPI-SFQGSTAPAAYVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIYVF 119 (133)
T ss_dssp CCEEEEECSCCC-CBTTBCSSCEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEECCceE-EECCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 455666675443 244445667666666532 233333 567888888999999998654
No 7
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=77.67 E-value=6.8 Score=24.83 Aligned_cols=56 Identities=5% Similarity=0.019 Sum_probs=36.4
Q ss_pred EEEEecCCCccccccccCCeEEEEEeCCC-CcChhHH----HHHHHHHhhcCCCCCceEeee
Q 034235 43 TIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEANA----ALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 43 ~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~dGkAN~----aLi~~LAk~LgV~ks~I~~~~ 99 (100)
-|.+.|+..- -+.|..+....|.|+... ...+.|+ +|.++|.+.||+++.+|...+
T Consensus 39 ~v~~~~~~~~-~~~G~~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (112)
T 3b64_A 39 MMTFHDSTPM-HFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLY 99 (112)
T ss_dssp EEEEECSCCC-CBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEeCCceE-EECCCCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEE
Confidence 3444454332 244556788888888665 4445554 456677888999999987654
No 8
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=75.17 E-value=2.8 Score=29.18 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=23.7
Q ss_pred ccCCeEEEEEeCCCC-----cChhHHHHHHHHHhhcC
Q 034235 58 VSDEAVGVQIDAPAK-----DGEANAALLEYMSSLIH 89 (100)
Q Consensus 58 ~~~~~l~V~V~ApP~-----dGkAN~aLi~~LAk~Lg 89 (100)
.+.+.--|.|.=|+. .|||| |+++|||+.|.
T Consensus 75 ~e~~~~fIQi~LP~~AThGDKgKAN-EfckfLAK~l~ 110 (126)
T 1t6a_A 75 TAGEETFIDIALPPGATHGDKGKAN-EFSKWLAKTLG 110 (126)
T ss_dssp EETTEEEEEEECCTTCCHHHHHHHH-HHHHHHHHHHC
T ss_pred ccCCcceEEEECCCCCCcCcchhHH-HHHHHHHHHhh
Confidence 355666777777774 68999 58999999885
No 9
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=71.35 E-value=17 Score=23.10 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=34.1
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCC-CcChhH----HHHHHHHHhhcCCCCCceEee
Q 034235 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~dGkAN----~aLi~~LAk~LgV~ks~I~~~ 98 (100)
++.|.+.|+..- .+.|-.+.+..+.|..-. ...+.| ++|.++|.+.||+++.+|-..
T Consensus 37 ~v~V~~~~~~~m-~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI~ 98 (114)
T 4dh4_A 37 YVMVGYSQTGQM-RFGGSSDPCAFIRVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYTT 98 (114)
T ss_dssp GCEEEEEECSCC-CBTTBCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred HEEEEEeCCceE-EECCcCCCeEEEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 445666776422 234444555555555433 222334 567788888999999998654
No 10
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=71.05 E-value=3.8 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCCCCCceEeee
Q 034235 77 NAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
=++|.+.|++.||+|..+|...+
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i 43 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVIL 43 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEE
Confidence 35567788889999999987654
No 11
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=68.47 E-value=13 Score=23.53 Aligned_cols=55 Identities=7% Similarity=0.112 Sum_probs=34.0
Q ss_pred EEEecCCCccccccccCCeEEEEEeCCC-CcChhHH----HHHHHHHhhcCCCCCceEeee
Q 034235 44 IHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEANA----ALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 44 v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~dGkAN~----aLi~~LAk~LgV~ks~I~~~~ 99 (100)
|.+.|...- .+.+-.+....|.|+... ..-+.|+ +|.++|.+.||+++.+|...+
T Consensus 40 v~~~~~~~~-~~~g~~~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (115)
T 2xcz_A 40 TSLQCGVPM-TFSGNTEPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYIGF 99 (115)
T ss_dssp EEEECSCCC-CBTTBCSSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCce-EECCCCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEE
Confidence 344454332 244445677777776554 3444554 456678888999999987654
No 12
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=68.15 E-value=17 Score=23.55 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=31.9
Q ss_pred EEEecCCCccccccccCCeEEEEEeCCC-CcChhH----HHHHHHHHhhcCCCCCceEeee
Q 034235 44 IHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 44 v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~dGkAN----~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
|.+.|+..- -+.+-.+....|.|+... ..-+.| ++|.++|.+.||+++.+|...+
T Consensus 40 V~~~~~~~~-~~gg~~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (125)
T 2wkb_A 40 SNYDYQKNL-RFSGSNEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEF 99 (125)
T ss_dssp EEEEECTTC-EETTBCSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEcCCce-EeCCCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEE
Confidence 444454332 133334677777777554 223334 5566788889999999987654
No 13
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=67.87 E-value=4.1 Score=22.75 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=17.3
Q ss_pred HHHHHHHHhhcCCCCCceEeee
Q 034235 78 AALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 78 ~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
++|.+.|.+.||+|..++...+
T Consensus 21 ~~i~~~l~~~lg~~~~~v~V~i 42 (61)
T 2opa_A 21 EKVTEAVKETTGASEEKIVVFI 42 (61)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEE
Confidence 5567788888999999887654
No 14
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=67.75 E-value=15 Score=24.55 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=31.0
Q ss_pred cccccCCeEEEEEeCCC-----CcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 55 ITDVSDEAVGVQIDAPA-----KDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 55 I~~~~~~~l~V~V~ApP-----~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
+.|-.+.+..+.|+... .+-+=-++|.++|.+.|||++.+|-..
T Consensus 71 fgGs~dp~a~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~riyI~ 119 (135)
T 3t5s_A 71 FGTSTDLCCFVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYIS 119 (135)
T ss_dssp BTTBCCSCEEEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cCcccceEEEEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEEEEE
Confidence 44445677777777654 222344778899999999999998654
No 15
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=65.99 E-value=15 Score=23.45 Aligned_cols=55 Identities=5% Similarity=0.195 Sum_probs=33.7
Q ss_pred EEEecCCCccccccccCCeEEEEEeCCC-CcChhHH----HHHHHHHhhcCCCCCceEeee
Q 034235 44 IHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEANA----ALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 44 v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~dGkAN~----aLi~~LAk~LgV~ks~I~~~~ 99 (100)
|.+.|+..- -+.+-.+....|.|+... ..-+.|+ +|.++|.+.||+++.+|...+
T Consensus 40 v~~~~~~~~-~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (119)
T 2os5_A 40 IEVLAGQRI-THGASRNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITY 99 (119)
T ss_dssp EEEECSCCC-CBTTBCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCccE-EEcCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEE
Confidence 444554322 133444677777777555 4444554 456677888999999987653
No 16
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=65.80 E-value=4.7 Score=22.49 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCCCCceEeee
Q 034235 77 NAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
-++|.+.|.+.||+|..++...+
T Consensus 20 ~~~i~~~l~~~lg~p~~~v~v~i 42 (62)
T 1otf_A 20 IRQVSEAMANSLDAPLERVRVLI 42 (62)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEE
Confidence 45677788899999999887543
No 17
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=63.65 E-value=14 Score=23.41 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=29.3
Q ss_pred cccCCeEEEEEeCCC-CcChhHH----HHHHHHHhhcCCCCCceEeee
Q 034235 57 DVSDEAVGVQIDAPA-KDGEANA----ALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 57 ~~~~~~l~V~V~ApP-~dGkAN~----aLi~~LAk~LgV~ks~I~~~~ 99 (100)
+-.+....|.|+... ..-+.|+ +|.++|.+.||+++.+|...+
T Consensus 52 g~~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (115)
T 1uiz_A 52 DSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINY 99 (115)
T ss_dssp TBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEE
Confidence 335677777777655 3444554 456677888999999987653
No 18
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=62.25 E-value=6.1 Score=21.79 Aligned_cols=22 Identities=0% Similarity=-0.109 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCCCCceEee
Q 034235 77 NAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~~~ 98 (100)
-++|.+.|++.||+|..++...
T Consensus 23 ~~~l~~~l~~~lg~p~~~v~v~ 44 (63)
T 2x4k_A 23 VSEVTDAVEKTTGANRQAIHVV 44 (63)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEE
Confidence 4667788899999999988764
No 19
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=59.81 E-value=7.8 Score=22.20 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCCCCCceEeee
Q 034235 78 AALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 78 ~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
++|.+.|++.||+|..+|...+
T Consensus 20 ~~it~~~~~~lg~~~~~v~V~i 41 (62)
T 3m20_A 20 ERLTSVAAEIYGMDRSAITILI 41 (62)
T ss_dssp HHHHHHHHHHHTCCTTSCEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEE
Confidence 4567788889999999987654
No 20
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=58.00 E-value=7.7 Score=22.47 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcCCCCCceEeee
Q 034235 77 NAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
=++|.+.|++.||+|..+|...+
T Consensus 23 ~~~lt~~l~~~lg~p~~~v~V~i 45 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASIVVII 45 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHHHCcCcccEEEEE
Confidence 35677888899999999887654
No 21
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=56.30 E-value=8.2 Score=23.02 Aligned_cols=23 Identities=4% Similarity=0.068 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCCCCCceEeee
Q 034235 77 NAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
-++|.+.|.+.||++..++...+
T Consensus 21 ~~~l~~~l~~~lgip~~~v~V~i 43 (76)
T 1gyx_A 21 AADITDVIIRHLNSKDSSISIAL 43 (76)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHHHHhCcCCceEEEEE
Confidence 45677788899999999886543
No 22
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=56.08 E-value=16 Score=24.21 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCce
Q 034235 60 DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEF 95 (100)
Q Consensus 60 ~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I 95 (100)
++...|-+...|..=..-..|++.||+.|+++.+.+
T Consensus 9 eeygYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F 44 (99)
T 4hti_A 9 EARGYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAF 44 (99)
T ss_dssp -CCEEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHHHHHhCCchhhe
Confidence 345667777888888888999999999999997654
No 23
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=56.06 E-value=9 Score=24.18 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=28.5
Q ss_pred cCCeEEEEEeCCC-CcChhHH----HHHHHHHhhcCCCCCceEeee
Q 034235 59 SDEAVGVQIDAPA-KDGEANA----ALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 59 ~~~~l~V~V~ApP-~dGkAN~----aLi~~LAk~LgV~ks~I~~~~ 99 (100)
.+....|.|+... ..-+.|+ +|.++|.+.||+++.+|...+
T Consensus 53 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 98 (113)
T 1hfo_A 53 TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHF 98 (113)
T ss_dssp CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEE
Confidence 4677777777655 3444554 455677888999999987653
No 24
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=54.30 E-value=11 Score=22.20 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcCCCCCceEeee
Q 034235 77 NAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
-++|.+.|++.||+|..+|...+
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i 43 (72)
T 3mb2_A 21 ARALSAAAAAAFDVPLAEVRLII 43 (72)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEE
Confidence 45677888999999999887654
No 25
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=51.07 E-value=12 Score=21.44 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcCCCCCceEee
Q 034235 77 NAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~~~ 98 (100)
-++|.+.|.+.||+|..++...
T Consensus 20 ~~~it~~~~~~lg~p~~~v~V~ 41 (65)
T 3ry0_A 20 GEALTAAAHETLGTPVEAVRVI 41 (65)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEE
Confidence 4567788899999999887654
No 26
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=48.28 E-value=14 Score=23.91 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=27.6
Q ss_pred ccCCeEEEEEeC-CCCcChhHH----HHHHHHHhhcCCCCCceEeee
Q 034235 58 VSDEAVGVQIDA-PAKDGEANA----ALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 58 ~~~~~l~V~V~A-pP~dGkAN~----aLi~~LAk~LgV~ks~I~~~~ 99 (100)
-.+..+.|.|+. ....-+.++ +|.+.|++.||+++.+|...+
T Consensus 55 ~~~~~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~V~i 101 (128)
T 1mww_A 55 RSDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITI 101 (128)
T ss_dssp SCTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEE
Confidence 345677777773 334444444 455677788999999987654
No 27
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=46.41 E-value=15 Score=22.06 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCCCCCceEeee
Q 034235 77 NAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
-++|.+.|++.||+|..+|...+
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i 43 (76)
T 3ej9_A 21 SAGLLRVISEATGEPRENIFFVI 43 (76)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHHHCcCcccEEEEE
Confidence 45677888899999999886543
No 28
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=44.88 E-value=17 Score=23.66 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=36.9
Q ss_pred eEEEEEEEecCCCcccccc------ccCCeEEEEEeCCCCcChhHHHHH----HHHHhhcCCCCCceEeee
Q 034235 39 SVSITIHAKPGSKSCSITD------VSDEAVGVQIDAPAKDGEANAALL----EYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 39 ~v~l~v~VkP~Ak~~~I~~------~~~~~l~V~V~ApP~dGkAN~aLi----~~LAk~LgV~ks~I~~~~ 99 (100)
.+.+.|+..|.... .+.+ -++..+.|.|+.....-+.+++|+ +.|++.||+++.+|...+
T Consensus 38 ~~~v~i~~~~~~~~-~~~g~~l~~~~~~~~~~I~i~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~I~i 107 (131)
T 2aal_A 38 DRYQTVSQHRPGEM-VLEDTGLGYGRSSAVVLLTVISRPRSEEQKVCFYKLLTGALERDCGISPDDVIVAL 107 (131)
T ss_dssp CCEEEEEEECTTSE-EECCTTSCCCCCTTCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HEEEEEEEECHHHc-ccCCccCCcCCCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEE
Confidence 34555555554322 2222 344678888885555555665554 566778899999987654
No 29
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=43.38 E-value=1.1e+02 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=17.9
Q ss_pred ChhHHHHHHHHHhhcCCCCCceEe
Q 034235 74 GEANAALLEYMSSLIHVSVGEFVE 97 (100)
Q Consensus 74 GkAN~aLi~~LAk~LgV~ks~I~~ 97 (100)
.+.=-+|++-|++.+++..+.+..
T Consensus 145 p~~Rv~Ll~~~~~f~~v~~~~~~l 168 (246)
T 1u2c_A 145 PKQRIDLLNRMQSFSEVELHNMKL 168 (246)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGCEE
T ss_pred HHHHHHHHHHHHHHhccchhheEe
Confidence 344456889999999998887654
No 30
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=39.83 E-value=42 Score=25.69 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=33.0
Q ss_pred CCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 60 DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 60 ~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
++.+.|.+.....---.+..+....|+.|||+..+|.+.
T Consensus 33 DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi~~e~V~v~ 71 (330)
T 3hrd_B 33 DGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVT 71 (330)
T ss_dssp TSCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEE
Confidence 578888888777755688899999999999999999864
No 31
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=38.47 E-value=65 Score=20.82 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=28.0
Q ss_pred CeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE 97 (100)
Q Consensus 61 ~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~ 97 (100)
+.+..++......|+-..+.++.+.+.+|++..++.+
T Consensus 127 ~~~~~~~~~~~~~~k~k~~~~~~~~~~~g~~~~~~i~ 163 (217)
T 3m1y_A 127 DALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLV 163 (217)
T ss_dssp TEEEEEEEESCCSTTHHHHHHHHHHHHHTCCSTTEEE
T ss_pred CEEEeeeccCCCCCCChHHHHHHHHHHcCCCHhHEEE
Confidence 3344445555567888899999999999999988754
No 32
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=36.24 E-value=16 Score=23.61 Aligned_cols=50 Identities=26% Similarity=0.414 Sum_probs=32.2
Q ss_pred eEEEEEEEecCCCccc-cccc-----cCCeEEEEEeCCCCcChhHHHHHHHHHhhc
Q 034235 39 SVSITIHAKPGSKSCS-ITDV-----SDEAVGVQIDAPAKDGEANAALLEYMSSLI 88 (100)
Q Consensus 39 ~v~l~v~VkP~Ak~~~-I~~~-----~~~~l~V~V~ApP~dGkAN~aLi~~LAk~L 88 (100)
.+.|.|+|..+-.-.. +... ..++-.|.|+--+++.+--++|++++|+.|
T Consensus 18 eieidirvstgkeleralqelekalaragarnvqitisaendeqakelleliarll 73 (96)
T 2jvf_A 18 EIEIDIRVSTGKELERALQELEKALARAGARNVQITISAENDEQAKELLELIARLL 73 (96)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcccHHHHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHH
Confidence 5777888776643221 2111 124445555556678888899999999887
No 33
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=34.57 E-value=55 Score=21.67 Aligned_cols=39 Identities=3% Similarity=0.040 Sum_probs=28.5
Q ss_pred CeEEEEEeCCCCcChh---HHHHHHHHHhhcCCCCCceEeee
Q 034235 61 EAVGVQIDAPAKDGEA---NAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 61 ~~l~V~V~ApP~dGkA---N~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
-.+.|.+..+..+-.. =++|-+.||+.||.|.+.|...+
T Consensus 22 P~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~ 63 (133)
T 3fwu_A 22 PVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTF 63 (133)
T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEE
Confidence 4677777776554433 34788999999999999877653
No 34
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=34.30 E-value=24 Score=27.23 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=25.1
Q ss_pred cChhHHHHHHHHHhhcCCCCCceEeeeC
Q 034235 73 DGEANAALLEYMSSLIHVSVGEFVESVF 100 (100)
Q Consensus 73 dGkAN~aLi~~LAk~LgV~ks~I~~~~~ 100 (100)
-|.+|.+|-+-+|+.||++..+++..-|
T Consensus 12 ~g~~~~~La~~ia~~lg~~l~~~~~~~F 39 (319)
T 3dah_A 12 TGNANPALAQEVVKILGIPLGKAMVSRF 39 (319)
T ss_dssp ECSSCHHHHHHHHHHHTSCCCCEEEEEC
T ss_pred ECCCCHHHHHHHHHHhCCceeeeEEEEC
Confidence 3678999999999999999999988766
No 35
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=34.21 E-value=89 Score=20.22 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=28.8
Q ss_pred CCCCcceEeeCCCeEEEEEEEecC--C-CccccccccCCeEEEEEeC
Q 034235 26 ENLPSCIRLVPPSSVSITIHAKPG--S-KSCSITDVSDEAVGVQIDA 69 (100)
Q Consensus 26 ~~~P~~i~~~~~g~v~l~v~VkP~--A-k~~~I~~~~~~~l~V~V~A 69 (100)
.++|.+........+.|.|.+.++ . +++-.+.+..+.|.|.++.
T Consensus 14 ~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg 60 (121)
T 3qor_A 14 ADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKG 60 (121)
T ss_dssp CBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETT
T ss_pred CcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcC
Confidence 344544333333479999998876 3 3444456788999998874
No 36
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=34.01 E-value=19 Score=28.05 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHhhcCCCCCceEeeeC
Q 034235 74 GEANAALLEYMSSLIHVSVGEFVESVF 100 (100)
Q Consensus 74 GkAN~aLi~~LAk~LgV~ks~I~~~~~ 100 (100)
|-+|.+|-+-+|+.||++..+++..-|
T Consensus 9 g~~~~~La~~ia~~lg~~l~~~~~~~F 35 (326)
T 3s5j_B 9 GSSHQDLSQKIADRLGLELGKVVTKKF 35 (326)
T ss_dssp CSSCCHHHHHHHHHTTCCCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEeEC
Confidence 678999999999999999999998776
No 37
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=32.61 E-value=27 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.0
Q ss_pred cChhHHHHHHHHHhhcCCCCCceEeeeC
Q 034235 73 DGEANAALLEYMSSLIHVSVGEFVESVF 100 (100)
Q Consensus 73 dGkAN~aLi~~LAk~LgV~ks~I~~~~~ 100 (100)
-|.+|.+|-+-+|+.||++..+++..-|
T Consensus 14 ~~~~~~~la~~ia~~lg~~l~~~~~~~F 41 (317)
T 1dku_A 14 SLNSNPELAKEIADIVGVQLGKCSVTRF 41 (317)
T ss_dssp ECSSCHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred ECCCCHHHHHHHHHHhCCeeEeeEEEEC
Confidence 3678999999999999999999988766
No 38
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=32.11 E-value=34 Score=22.65 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=24.5
Q ss_pred CeEEEEEeCCC-CcChhHH----HHHHHHHhhcCCCCCceEeee
Q 034235 61 EAVGVQIDAPA-KDGEANA----ALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 61 ~~l~V~V~ApP-~dGkAN~----aLi~~LAk~LgV~ks~I~~~~ 99 (100)
+.+.|.|.... ..-+.++ +|.+.|++.||++..++...+
T Consensus 61 ~~~~I~i~~~~Grt~eqk~~l~~~l~~~l~~~lgi~~~~v~V~i 104 (148)
T 3n4h_A 61 NHIWVQATIRSGRTEKQKEELLLRLTQEIALILGIPNEEVWVYI 104 (148)
T ss_dssp TCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHhCcCcCcEEEEE
Confidence 44656555433 2223444 566677788899999987754
No 39
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=31.57 E-value=28 Score=27.66 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=30.3
Q ss_pred cCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 59 ~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
.++.+.+.|.- +|.-..++++.||+.|||+.++|.+.
T Consensus 62 ~G~~l~~~l~K---~n~~T~~a~~~Lak~lgi~~~~i~yA 98 (379)
T 1szw_A 62 EGEHILVRILK---NGCNTRFVADALAKFLKIHAREVSFA 98 (379)
T ss_dssp CSSEEEEEEEE---SSSCHHHHHHHHHHHTTCCGGGEEES
T ss_pred CcCEEEEEEEE---cCCCHHHHHHHHHHHhCcCHHhEeEC
Confidence 34677777763 67789999999999999999999763
No 40
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=30.87 E-value=37 Score=22.40 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=22.8
Q ss_pred CCCCcChhHHHHHHHHHhhcCCCCCceE
Q 034235 69 APAKDGEANAALLEYMSSLIHVSVGEFV 96 (100)
Q Consensus 69 ApP~dGkAN~aLi~~LAk~LgV~ks~I~ 96 (100)
+.|.--.--+.|.++|++.|+++..+|+
T Consensus 8 ~~~~~~~I~~~V~~ilaE~lev~~e~Vt 35 (102)
T 2l9f_A 8 ALPAATGALELVRHLVAERAELPVEVLR 35 (102)
T ss_dssp SCSSSCCHHHHHHHHHHHHTTSCSSSCC
T ss_pred ccchHHHHHHHHHHHHHHHHCCCHHHcC
Confidence 4455555678899999999999999886
No 41
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=30.72 E-value=25 Score=28.08 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=30.5
Q ss_pred cCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 59 ~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
.++.+.+.|.- +|.-..+++..||+.|||+.++|.+.
T Consensus 46 ~G~~l~f~l~K---~n~dT~~a~~~Lak~lgi~~~~i~yA 82 (446)
T 1z2z_A 46 EGKYLIVELTK---RDWDTHHLTRTLSRILQVSQKRISVA 82 (446)
T ss_dssp CSSEEEEEEEE---ESCCHHHHHHHHHHHHTCCGGGEEES
T ss_pred CCCEEEEEEEE---cCCCHHHHHHHHHHHhCcChHhEeEC
Confidence 35677777763 67889999999999999999999763
No 42
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=29.78 E-value=1e+02 Score=20.59 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=23.9
Q ss_pred CeEEEEEEEecCCCccccccccCCeEEEEEeCC
Q 034235 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAP 70 (100)
Q Consensus 38 g~v~l~v~VkP~Ak~~~I~~~~~~~l~V~V~Ap 70 (100)
..|.|.|.++--.+.+-.+.+.++.|.|.+..+
T Consensus 30 ~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~ 62 (134)
T 1wh0_A 30 DSVVVHVYVKEICRDTSRVLFREQDFTLIFQTR 62 (134)
T ss_dssp TEEEEEEECCSBCTTSCEEEECSSEEEEEECBC
T ss_pred CEEEEEEEeCCCCcccCEEEEECCEEEEEEEcC
Confidence 379999998643344555567889999988654
No 43
>2l25_A Uncharacterized protein; JCSG, structural genomics, PSI-biology, protein structure in joint center for structural genomics; NMR {Bordetella bronchiseptica}
Probab=29.12 E-value=1.3e+02 Score=20.15 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=44.3
Q ss_pred CeEEEEEEEecCCCccccccc----cCCeEEEEEeCCCCcCh-hHHHHHHHHHhhcC----CCCCceE
Q 034235 38 SSVSITIHAKPGSKSCSITDV----SDEAVGVQIDAPAKDGE-ANAALLEYMSSLIH----VSVGEFV 96 (100)
Q Consensus 38 g~v~l~v~VkP~Ak~~~I~~~----~~~~l~V~V~ApP~dGk-AN~aLi~~LAk~Lg----V~ks~I~ 96 (100)
++..|++.+.|+.....=.+. +-+.+.|.|-.|+-.|. +..++.+-|+++|. +..+.++
T Consensus 40 ~~~ylr~~~~p~~t~~~~lg~~~~~~~Gv~qi~v~~p~g~G~~~~~~iAd~l~~~F~~~~~l~~~~~~ 107 (141)
T 2l25_A 40 AGVYLRAYVMPAATISRDAAGDHRQYRGVFQVNVVMPIGDGSRSAEQVAAELDALFPVNLVMQSGGLA 107 (141)
T ss_dssp TTBEEEEEEECCCCCCCCSSSCCCCCCEEEEEEEEEECSSSCCTHHHHHHHHHHHCCTTCCEECSSSE
T ss_pred CCeEEEEEEcCCCceecccCCCccEEEEEEEEEEEeeCCCCchHHHHHHHHHHHHhhccceeeeCCEE
Confidence 478999999999887643332 23789999999999996 56778888888884 4455443
No 44
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=24.26 E-value=97 Score=26.39 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=35.8
Q ss_pred cCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 59 ~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
.++.+.|.+-....---.+..+....|+.||||..+|.+.
T Consensus 468 ~dG~v~v~~g~~e~GqG~~T~~aQiaAe~Lgip~e~V~v~ 507 (769)
T 1rm6_A 468 FDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVI 507 (769)
T ss_dssp TTCCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCeEEEEECCccCCCCHHHHHHHHHHHHhCCCHHHEEEe
Confidence 3688999999988887889999999999999999999875
No 45
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=24.24 E-value=53 Score=21.79 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=26.4
Q ss_pred cCCeEEEEEeC-CCCcChhH----HHHHHHHHhhcCCCCCceEeee
Q 034235 59 SDEAVGVQIDA-PAKDGEAN----AALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 59 ~~~~l~V~V~A-pP~dGkAN----~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
.++.+.|.|+. .++.-+.= ++|.+.| +.||+++.+|...+
T Consensus 62 s~~~v~I~I~~~~gRt~EqK~~L~~~it~~l-~~lg~~~~~v~V~i 106 (136)
T 3mlc_A 62 SPSVVIIHVFTQAGRTIETKQRVFAAITESL-APIGVAGSDVFIAI 106 (136)
T ss_dssp CSCCEEEEEEEETTCCHHHHHHHHHHHHHHH-TTTTCCGGGEEEEE
T ss_pred CCCeEEEEEEECCCCCHHHHHHHHHHHHHHH-HHcCCCcccEEEEE
Confidence 34677777775 33433333 4556667 78899999998764
No 46
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=24.15 E-value=58 Score=19.36 Aligned_cols=49 Identities=6% Similarity=0.011 Sum_probs=37.1
Q ss_pred CeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhh
Q 034235 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSL 87 (100)
Q Consensus 38 g~v~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dGkAN~aLi~~LAk~ 87 (100)
+++.| -.|.|++....-.++..+-..+.|...++.|.--+++.++|...
T Consensus 25 ~~~~I-~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 73 (88)
T 1kwa_A 25 NHCIV-ARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM 73 (88)
T ss_dssp GGEEE-EEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence 34544 48889987765455666667789999999988889999998764
No 47
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A
Probab=24.06 E-value=97 Score=21.51 Aligned_cols=46 Identities=7% Similarity=0.079 Sum_probs=26.9
Q ss_pred CcceEeeCCCeEEEEEEEecC-----CCccccccccCCeEEEEEeCCCCcC
Q 034235 29 PSCIRLVPPSSVSITIHAKPG-----SKSCSITDVSDEAVGVQIDAPAKDG 74 (100)
Q Consensus 29 P~~i~~~~~g~v~l~v~VkP~-----Ak~~~I~~~~~~~l~V~V~ApP~dG 74 (100)
|..+...++|.+.|.++-.+. ++-..-..+.-+.+++|++.|...|
T Consensus 36 ~~nv~v~~~G~L~i~~~~~~~~~~~s~~i~S~~~f~yG~~E~r~k~p~~~G 86 (214)
T 2ayh_A 36 ANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTG 86 (214)
T ss_dssp GGGEEECTTSCEEEEEEEEETTEEEEEEEEESSCBCSEEEEEEEECCCCTT
T ss_pred ccCEEEcCCCEEEEEEecCCCCceeeEEEEECCeEeeEEEEEEEEcCCCCe
Confidence 455666554688888776552 1111111234478999999886554
No 48
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=23.68 E-value=1.3e+02 Score=18.23 Aligned_cols=34 Identities=9% Similarity=0.243 Sum_probs=25.6
Q ss_pred CeEEEEEEEecCCCccccc-cccCCeEEEEEeCCCC
Q 034235 38 SSVSITIHAKPGSKSCSIT-DVSDEAVGVQIDAPAK 72 (100)
Q Consensus 38 g~v~l~v~VkP~Ak~~~I~-~~~~~~l~V~V~ApP~ 72 (100)
..+.|.+.+ ||.+++.|. .++++.|.|+-.....
T Consensus 14 ~~~~v~~~l-PG~~~edi~v~~~~~~L~I~g~~~~~ 48 (100)
T 3gla_A 14 NHFVLYADL-PGIDPSQIEVQMDKGILSIRGERKSE 48 (100)
T ss_dssp SEEEEEEEC-TTSCGGGCEEEEETTEEEEEEEECCG
T ss_pred CEEEEEEEC-CCCCHHHEEEEEECCEEEEEEEEcCc
Confidence 478888887 898887765 4578888888765544
No 49
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=23.55 E-value=97 Score=26.57 Aligned_cols=40 Identities=3% Similarity=0.135 Sum_probs=35.9
Q ss_pred cCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 59 ~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
.++.+.|.+-+...---.+..+....|+.||||..+|.+.
T Consensus 515 ~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~e~V~v~ 554 (809)
T 1n62_B 515 PTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIE 554 (809)
T ss_dssp TTSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEe
Confidence 3688999999988888889999999999999999999875
No 50
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=23.33 E-value=1.2e+02 Score=20.33 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=28.6
Q ss_pred ceEeeCCCeEEEEEEEecCCCccccc-cccCCeEEEEEeCCC
Q 034235 31 CIRLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQIDAPA 71 (100)
Q Consensus 31 ~i~~~~~g~v~l~v~VkP~Ak~~~I~-~~~~~~l~V~V~ApP 71 (100)
-+...++ .+.|.+.+ ||-+++.|. .++++.|.|+-....
T Consensus 60 di~e~~~-~~~v~~dl-PG~~~edi~V~~~~~~L~I~g~~~~ 99 (161)
T 4eld_A 60 SIIEGDQ-HIKVIAWL-PGVNKEDIILNAVGDTLEIRAKRSP 99 (161)
T ss_dssp EEEECSS-EEEEEEEC-TTCCGGGEEEEEETTEEEEEEECCC
T ss_pred eEEEeCC-EEEEEEEC-CCCChHhEEEEEECCEEEEEEEEcc
Confidence 3444444 89999988 998888765 467899999877655
No 51
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=23.04 E-value=1e+02 Score=26.35 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=35.7
Q ss_pred cCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 59 ~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
.++.+.|.+-+...---.+..+....|+.||||..+|.+.
T Consensus 493 ~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~~~V~v~ 532 (788)
T 1t3q_B 493 PTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQ 532 (788)
T ss_dssp TTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEEE
T ss_pred cCCeEEEEECCcCCCCCHHHHHHHHHHHHHCCCHHHEEEe
Confidence 3688999999988887889999999999999999999875
No 52
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=22.93 E-value=50 Score=18.80 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhcCCCCCceE
Q 034235 77 NAALLEYMSSLIHVSVGEFV 96 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~ 96 (100)
-+.|.+++++.|+++..+|.
T Consensus 6 ~~~l~~~~~~~l~~~~~~i~ 25 (79)
T 2l3v_A 6 AERVKKIVVEHLGVDADKVT 25 (79)
T ss_dssp HHHHHHHHHHHTCCCSTTCC
T ss_pred HHHHHHHHHHHhCCCHhhCC
Confidence 35789999999999877765
No 53
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=22.38 E-value=62 Score=21.70 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhhcCCCCCceEeee
Q 034235 76 ANAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 76 AN~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
.=.++...+|+.||+|..++.+-.
T Consensus 67 ~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 67 SLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp BHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred cHHHHHHHHHHHhCCCcccEEEEE
Confidence 345789999999999999887643
No 54
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=22.36 E-value=1.1e+02 Score=26.35 Aligned_cols=40 Identities=0% Similarity=0.012 Sum_probs=35.7
Q ss_pred cCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 59 ~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
.++.+.|.+-+...---.+..+....|+.||||..+|.+.
T Consensus 509 ~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi~~e~V~v~ 548 (803)
T 1ffv_B 509 PTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVE 548 (803)
T ss_dssp TTSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cCCeEEEEECCcCCCCCHHHHHHHHHHHHHCCCHHHEEEe
Confidence 3688999999888887889999999999999999999875
No 55
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=21.89 E-value=1.7e+02 Score=18.90 Aligned_cols=33 Identities=6% Similarity=0.162 Sum_probs=23.6
Q ss_pred CCeEEEEEEEecC--C-CccccccccCCeEEEEEeC
Q 034235 37 PSSVSITIHAKPG--S-KSCSITDVSDEAVGVQIDA 69 (100)
Q Consensus 37 ~g~v~l~v~VkP~--A-k~~~I~~~~~~~l~V~V~A 69 (100)
...+.|.|.+.++ . +++-.+.+..+.|.|.+..
T Consensus 16 ~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg 51 (131)
T 1wfi_A 16 LAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKG 51 (131)
T ss_dssp SSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETT
T ss_pred CCEEEEEEECCCCCcccccceEEEEeCCEEEEEECC
Confidence 3478888888776 3 3444556788999999864
No 56
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=21.64 E-value=24 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhcCCCCCce
Q 034235 77 NAALLEYMSSLIHVSVGEF 95 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I 95 (100)
-++.++++|+.|++|.++|
T Consensus 42 ~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 42 RPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp CHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHHHhCcCHHHH
Confidence 4678999999999999886
No 57
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=21.44 E-value=1.1e+02 Score=26.20 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=34.9
Q ss_pred cCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 59 ~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
.++.+.|.+-+...---.+..+....|+.||||..+|.+.
T Consensus 475 ~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~e~V~v~ 514 (777)
T 2w3s_B 475 TDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRIT 514 (777)
T ss_dssp TTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEEC
T ss_pred cCCeEEEEECCccCCCChhHHHHHHHHHHHCCCHHHEEEE
Confidence 3688889888888776789999999999999999999874
No 58
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=21.43 E-value=86 Score=20.20 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhhcCCCCCceEeee
Q 034235 75 EANAALLEYMSSLIHVSVGEFVESV 99 (100)
Q Consensus 75 kAN~aLi~~LAk~LgV~ks~I~~~~ 99 (100)
+==++|++.+++.+.|...+|.+++
T Consensus 42 ~lk~eIl~VIsKYv~Id~~~v~V~l 66 (95)
T 2kxo_A 42 TLRKALMEVLSKYVNVSLDNIRISQ 66 (95)
T ss_dssp HHHHHHHHHHHHHSCCCTTSEEEEE
T ss_pred HHHHHHHHHHHHheecchhheEEEE
Confidence 3457899999999999999988764
No 59
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=21.31 E-value=1.5e+02 Score=18.42 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=22.6
Q ss_pred eEEEEEEEecCCCc-cccccccCCeEEEEEeCC
Q 034235 39 SVSITIHAKPGSKS-CSITDVSDEAVGVQIDAP 70 (100)
Q Consensus 39 ~v~l~v~VkP~Ak~-~~I~~~~~~~l~V~V~Ap 70 (100)
.+.|.|.+. +.+. +--+.+.++.|.|.+...
T Consensus 20 ~V~v~i~l~-~v~~~~v~v~~~~~~l~v~~~~~ 51 (114)
T 1rl1_A 20 QVVITLMIK-NVQKNDVNVEFSEKELSALVKLP 51 (114)
T ss_dssp EEEEEECCC-SCCGGGEEEECSSSCEEEEEECT
T ss_pred EEEEEEEeC-CCCHHHCEEEEEcCEEEEEEEeC
Confidence 799999986 6553 434467788999988753
No 60
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=20.56 E-value=1.1e+02 Score=19.23 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=24.3
Q ss_pred ccCCeEEEEEeCCCCcChhHHHHH---HHHHhhcCCCC
Q 034235 58 VSDEAVGVQIDAPAKDGEANAALL---EYMSSLIHVSV 92 (100)
Q Consensus 58 ~~~~~l~V~V~ApP~dGkAN~aLi---~~LAk~LgV~k 92 (100)
.+++.|+|+|+..|+. .-++|. +-||+.|++..
T Consensus 37 ldgndleiritgvpeq--vrkelakeaerlakefnitv 72 (85)
T 2kl8_A 37 LDGNDLEIRITGVPEQ--VRKELAKEAERLAKEFNITV 72 (85)
T ss_dssp ECSSCEEEEEESCCHH--HHHHHHHHHHHHHHHTCCEE
T ss_pred ecCCeeEEEEecChHH--HHHHHHHHHHHHHHhcCeEE
Confidence 4678899999999985 444443 56888888753
No 61
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=20.43 E-value=97 Score=24.38 Aligned_cols=39 Identities=3% Similarity=0.000 Sum_probs=29.6
Q ss_pred ccccc-CCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 55 ITDVS-DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 55 I~~~~-~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
+.-++ ++.|.|....+-.. .+...||+.||+|.++|..-
T Consensus 192 ~A~~~~~g~l~v~~stQ~p~-----~~r~~vA~~Lglp~~~VrV~ 231 (425)
T 3hrd_A 192 VSYYDNEGMLTVVVSTQNPH-----YDRGEVAGMLALPNSKVRII 231 (425)
T ss_dssp EEEECTTCCEEEEECCSCHH-----HHHHHHHHHTTCCGGGEEEE
T ss_pred EEEECCCCeEEEEECCCCHH-----HHHHHHHHHhCCChhhEEEE
Confidence 33344 46898888876553 67788999999999999864
No 62
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=20.16 E-value=50 Score=19.16 Aligned_cols=22 Identities=5% Similarity=0.012 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHhhcCCCCCceE
Q 034235 75 EANAALLEYMSSLIHVSVGEFV 96 (100)
Q Consensus 75 kAN~aLi~~LAk~LgV~ks~I~ 96 (100)
..-+.|.+++++.|+++...|.
T Consensus 7 ~i~~~l~~ii~~~l~~~~~~i~ 28 (82)
T 2qnw_A 7 PLLERVKDVVADQLGVDRARIN 28 (82)
T ss_dssp HHHHHHHHHHHHHHCCCGGGCC
T ss_pred HHHHHHHHHHHHHHCCCHhhCC
Confidence 3456789999999999877764
No 63
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=20.05 E-value=1.1e+02 Score=21.48 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.8
Q ss_pred EeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 67 IDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 67 V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
|...|.=+-=-+++.+.||+.|+++.++|...
T Consensus 99 i~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vK 130 (152)
T 1iv3_A 99 TLDRPKLGPHRKALVDSLSRLMRLPQDRIGLT 130 (152)
T ss_dssp ECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EecCCcCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 44557777778999999999999999999764
No 64
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=20.04 E-value=1.1e+02 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=33.2
Q ss_pred cCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 59 ~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
.++.+.|.+-+...---.+..+....|+.||||..+|.+.
T Consensus 455 ~DG~v~v~~g~~e~GQG~~T~~aQiaAe~Lgi~~e~V~v~ 494 (755)
T 3nvz_C 455 TDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYIS 494 (755)
T ss_dssp TTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEECC
T ss_pred cCCeEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEE
Confidence 3578888888877755688889999999999999999763
No 65
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=20.04 E-value=1.1e+02 Score=21.68 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=26.7
Q ss_pred EeCCCCcChhHHHHHHHHHhhcCCCCCceEee
Q 034235 67 IDAPAKDGEANAALLEYMSSLIHVSVGEFVES 98 (100)
Q Consensus 67 V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~ 98 (100)
|...|.=+-=-+++.+.||+.|+++.++|...
T Consensus 102 i~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vK 133 (160)
T 2pmp_A 102 ILQRPKISPHKETIRSNLSKLLGADPSVVNLK 133 (160)
T ss_dssp ECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EecCCcCHHHHHHHHHHHHHHHCCCcceEEEE
Confidence 34567777778999999999999999998764
No 66
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=20.03 E-value=60 Score=18.50 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcCCCCCceE
Q 034235 77 NAALLEYMSSLIHVSVGEFV 96 (100)
Q Consensus 77 N~aLi~~LAk~LgV~ks~I~ 96 (100)
-+.|.+++++.|+++..+|.
T Consensus 9 ~~~l~~~i~~~l~~~~~~i~ 28 (82)
T 2cnr_A 9 VAGLAEIVNEIAGIPVEDVK 28 (82)
T ss_dssp HHHHHHHHHHHSCCCTTTCC
T ss_pred HHHHHHHHHHHhCCCHHHCC
Confidence 46788999999999877664
Done!