BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034236
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1
Length = 117
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 1 MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVT 60
MSG +STAAY ARRAAQKERV+ILYRRALKDTLNWAVHRH+FY+DA DLR +F N+ V
Sbjct: 1 MSG-VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVE 59
Query: 61 DLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSK 95
D+D ID++I EA YNKWRHPDPYI GSK
Sbjct: 60 DVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSK 94
>sp|Q54NR3|NDUB9_DICDI NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Dictyostelium discoideum GN=ndufb9 PE=3 SV=1
Length = 106
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
+ ++V LYR+A+K +++ +F +A DLR +A K+ T+ AI +M+ + E
Sbjct: 3 SHSQKVVRLYRKAIKSIRDYSEDYDMFLLNAGDLRASLKAGKNETNPFAIQQMVKQLEDF 62
Query: 76 YNKWRHPDPYIGKCFCTGSK 95
+ W HPDPYI G+K
Sbjct: 63 NSYWEHPDPYIPCDGINGTK 82
>sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Bos taurus GN=NDUFB9 PE=1 SV=2
Length = 179
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 5 ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
+S+ AY+ +++V LY+RAL+ +W +HR + A LR RF+ +K+ D+
Sbjct: 4 LSSGAYLT----HQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVK 59
Query: 65 IDRMIDEAEATYNKWRHPDPYI 86
+++ EAE + +HP PYI
Sbjct: 60 ATQLLREAEEEFWHGQHPQPYI 81
>sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Mus musculus GN=Ndufb9 PE=1 SV=3
Length = 179
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
+++V LY+RAL+ +W +HR + A +R RFE +K+ D+ +++ EAE +
Sbjct: 13 QQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEEFW 72
Query: 78 KWRHPDPYI 86
+ +HP PYI
Sbjct: 73 QNQHPQPYI 81
>sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Pongo abelii GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 5 ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
+++ AY+ R ++V LY+RAL+ +W V R + A +R RFE +K+ D+
Sbjct: 4 LASGAYLTHR----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMVR 59
Query: 65 IDRMIDEAEATYNKWRHPDPYI 86
+++ EAE + +HP PYI
Sbjct: 60 ATQLLKEAEEEFWYRQHPQPYI 81
>sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 12 ARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDE 71
R +++V LY+RAL+ +W V R + A +R RFE +K+ D+ +++ E
Sbjct: 7 GRYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKE 66
Query: 72 AEATYNKWRHPDPYI 86
AE + +HP PYI
Sbjct: 67 AEEEFWYRQHPQPYI 81
>sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Homo sapiens GN=NDUFB9 PE=1 SV=3
Length = 179
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
+++V LY+RAL+ +W V R + A +R RFE +K+ D+ +++ EAE +
Sbjct: 13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72
Query: 78 KWRHPDPYI 86
+HP PYI
Sbjct: 73 YRQHPQPYI 81
>sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
+++V LY+RAL+ +W V R + A +R RFE +K+ D+ +++ EAE +
Sbjct: 13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72
Query: 78 KWRHPDPYI 86
+HP PYI
Sbjct: 73 YRQHPQPYI 81
>sp|B4U759|RL6_HYDS0 50S ribosomal protein L6 OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=rplF PE=3 SV=1
Length = 181
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 19 ERVQILYRRALKDT---LNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDR-MIDEAEA 74
E V + Y+ A+K LN ++YK ++L + NK + ID+ ++ + A
Sbjct: 88 EVVGLGYKAAMKGQELELNLGYSHPIYYKPPAGIKLEVKENK--ITVSGIDKQLVGQVAA 145
Query: 75 TYNKWRHPDPYIGKCF 90
K+R PDPY GK
Sbjct: 146 EIIKFRKPDPYKGKGI 161
>sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana
GN=RPL6 PE=1 SV=1
Length = 223
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 33 LNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGK 88
LN + + D L+++ E N +T I + AT KWR P+PY GK
Sbjct: 148 LNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGK 203
>sp|O52347|RL6_MYCGA 50S ribosomal protein L6 OS=Mycoplasma gallisepticum (strain R(low
/ passage 15 / clone 2)) GN=rplF PE=3 SV=2
Length = 183
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 21 VQILYRRALKD-TLNWAV-HRHLFYKD-ADDLRLRFEANKHVTDLDAIDRM-IDEAEATY 76
V + YR +LKD LN + + H D DL++ + N +T + ID+ + E
Sbjct: 92 VGVGYRASLKDNVLNLQLGYSHPINLDIPKDLKVTVDKNTEIT-VSGIDKQKVGEFAIQI 150
Query: 77 NKWRHPDPYIGKCFC 91
KWR P+PY GK
Sbjct: 151 RKWRMPEPYKGKGVL 165
>sp|P47412|RL6_MYCGE 50S ribosomal protein L6 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=rplF PE=3 SV=1
Length = 184
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 8 AAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDR 67
Y A Q +Q+ Y +K+ + + L ++ E N +T
Sbjct: 95 VGYRANVEGQFLNLQLGYSHPIKELI------------PNQLTVKVEKNTEITISGIKKE 142
Query: 68 MIDEAEATYNKWRHPDPYIGKCFC 91
++ + KWR P+PY GK
Sbjct: 143 LVGQFATEIRKWRKPEPYKGKGVL 166
>sp|Q50303|RL6_MYCPN 50S ribosomal protein L6 OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=rplF PE=1 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 21 VQILYRRALK-DTLNWAV-HRH-LFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
V + YR ++ +TLN + + H + K L ++ E N +T ++ +
Sbjct: 93 VGVGYRANVEGETLNLQLGYSHPIKEKIPKGLTVKVEKNTEITISGISKELVGQFATEVR 152
Query: 78 KWRHPDPYIGKCFC 91
KWR P+PY GK
Sbjct: 153 KWRKPEPYKGKGVL 166
>sp|B5FYC7|LYRM1_TAEGU LYR motif-containing protein 1 OS=Taeniopygia guttata GN=LYRM1
PE=2 SV=1
Length = 122
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 15 AAQKERVQILYRRALKDTLNWA-----VHRHLFYKD--ADDLRLRFEANKHVTDLDAIDR 67
A ++ V LYR+ + NW + + K+ ++ R F NK+VTD + I +
Sbjct: 3 PATRQEVLGLYRKVFRIAKNWQSASGQIEETMREKEYIRNEARTLFRKNKNVTDPNLIKQ 62
Query: 68 MIDEAEA 74
I+E EA
Sbjct: 63 CIEECEA 69
>sp|C6DJ88|GHRB_PECCP Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=ghrB
PE=3 SV=1
Length = 320
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 41 LFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
L+ K ADDLR R + + VT+LDA + A AT
Sbjct: 7 LYKKIADDLRARLDQHFTVTELDAFPSLDHPALAT 41
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,998,234
Number of Sequences: 539616
Number of extensions: 1218884
Number of successful extensions: 4985
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4972
Number of HSP's gapped (non-prelim): 18
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)